Citrus Sinensis ID: 011997

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGMMPKKTLIISLMLAKL
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcc
cccccHHccccHHHHHcccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccHHHHHHHHHcccccHHHHcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcc
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVltiplltsypyIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIlqnravdqdqrgaanGIAMTGMSLfkaagpagggaLFSWAQKRldasflpgmmpkKTLIISLMLAKL
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAsflpgmmpkKTLIISLMLAKL
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGMMPKKTLIISLMLAKL
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGMMPKKTLIISLML***
*****************************************ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV**DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGMMPKKTLIISLMLAKL
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGMMPKKTLIISLMLAKL
*********EPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH*****SC*VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGMMPKKTLIISLMLAKL
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiii
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGMMPKKTLIISLMLAKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query473 2.2.26 [Sep-21-2011]
Q94BZ1478 Protein ZINC INDUCED FACI yes no 0.928 0.918 0.696 0.0
Q8RWN2486 Protein ZINC INDUCED FACI no no 0.953 0.927 0.655 1e-171
Q3EAQ5484 Probable peptide/nitrate no no 0.915 0.894 0.614 1e-158
P25351 611 Uncharacterized membrane yes no 0.460 0.356 0.324 1e-28
B4EYY4402 Multidrug resistance prot yes no 0.372 0.437 0.281 7e-10
D8MQN9411 Multidrug resistance prot no no 0.412 0.474 0.269 3e-09
A8GCZ5411 Multidrug resistance prot no no 0.372 0.428 0.275 3e-09
P39843400 Multidrug resistance prot yes no 0.655 0.775 0.267 8e-09
P0A4K5399 Multi-drug resistance eff yes no 0.306 0.363 0.298 3e-08
P0A4K4399 Multi-drug resistance eff yes no 0.306 0.363 0.298 3e-08
>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/442 (69%), Positives = 360/442 (81%), Gaps = 3/442 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
            LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query: 436 PAGGGALFSWAQKRLDASFLPG 457
           PA  G +FSW++KR  A+FLPG
Sbjct: 428 PAAAGIIFSWSEKRQGAAFLPG 449
Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 Back     alignment and function description
>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 Back     alignment and function description
>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 Back     alignment and function description
>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 Back     alignment and function description
>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 Back     alignment and function description
>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 Back     alignment and function description
>sp|P39843|BMR2_BACSU Multidrug resistance protein 2 OS=Bacillus subtilis (strain 168) GN=blt PE=3 SV=1 Back     alignment and function description
>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 Back     alignment and function description
>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query473
224097490495 predicted protein [Populus trichocarpa] 0.955 0.913 0.760 0.0
359487104 1624 PREDICTED: uncharacterized protein LOC10 0.953 0.277 0.713 0.0
296085436518 unnamed protein product [Vitis vinifera] 0.953 0.870 0.713 0.0
225465403487 PREDICTED: protein ZINC INDUCED FACILITA 0.951 0.924 0.735 0.0
225465405487 PREDICTED: protein ZINC INDUCED FACILITA 0.953 0.926 0.750 0.0
297807399479 hypothetical protein ARALYDRAFT_488196 [ 0.942 0.931 0.696 0.0
30684565478 zinc induced facilitator-like 1 protein 0.928 0.918 0.696 1e-179
359481459490 PREDICTED: protein ZINC INDUCED FACILITA 0.953 0.920 0.684 1e-177
224137524465 predicted protein [Populus trichocarpa] 0.923 0.939 0.679 1e-175
356548793488 PREDICTED: protein ZINC INDUCED FACILITA 0.949 0.920 0.662 1e-174
>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/459 (76%), Positives = 402/459 (87%), Gaps = 7/459 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 246 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
              S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
           A  L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ SVSI+TG+FILQN AVDQ+QRGA
Sbjct: 362 AAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVSIVTGMFILQNNAVDQNQRGA 421

Query: 420 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGM 458
           ANGI+MTGMSLFKA GPAGGGA+ SWAQ+R +A+FLPG+
Sbjct: 422 ANGISMTGMSLFKAVGPAGGGAILSWAQRRQNAAFLPGV 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224137524|ref|XP_002322579.1| predicted protein [Populus trichocarpa] gi|222867209|gb|EEF04340.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548793|ref|XP_003542784.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query473
TAIR|locus:2177105478 ZIFL1 "zinc induced facilitato 0.955 0.945 0.635 1.4e-151
TAIR|locus:2173254486 ZIF1 "zinc induced facilitator 0.953 0.927 0.605 4.5e-146
TAIR|locus:2101109484 ZIFL2 "AT3G43790" [Arabidopsis 0.926 0.904 0.589 1.5e-136
ASPGD|ASPL0000053890 591 AN0890 [Emericella nidulans (t 0.431 0.345 0.344 4.6e-44
DICTYBASE|DDB_G0269964 665 DDB_G0269964 "Uncharacterized 0.441 0.314 0.309 3.7e-34
CGD|CAL0004954546 orf19.3432 [Candida albicans ( 0.304 0.263 0.386 1.1e-30
CGD|CAL0002781 633 orf19.4550 [Candida albicans ( 0.304 0.227 0.379 2.7e-30
ASPGD|ASPL0000051539480 AN1423 [Emericella nidulans (t 0.327 0.322 0.354 1.5e-29
DICTYBASE|DDB_G0282945 669 DDB_G0282945 [Dictyostelium di 0.446 0.315 0.297 6.6e-29
ASPGD|ASPL0000011265530 AN4019 [Emericella nidulans (t 0.427 0.381 0.276 2e-28
TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
 Identities = 290/456 (63%), Positives = 344/456 (75%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
             GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct:   308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query:   376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
              LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct:   368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query:   436 PAGGGALFSWAQKRLDASFLPGMMPKKTLIISLMLA 471
             PA  G +FSW++KR  A+FLPG       I++++LA
Sbjct:   428 PAAAGIIFSWSEKRQGAAFLPGTQ-MVFFILNVVLA 462
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000011265 AN4019 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94BZ1ZIFL1_ARATHNo assigned EC number0.69680.92810.9184yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query473
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 2e-22
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 2e-18
TIGR00880141 TIGR00880, 2_A_01_02, Multidrug resistance protein 5e-12
TIGR00895398 TIGR00895, 2A0115, benzoate transport 2e-11
COG2814394 COG2814, AraJ, Arabinose efflux permease [Carbohyd 7e-11
PRK09874408 PRK09874, PRK09874, drug efflux system protein Mdt 8e-11
TIGR00898505 TIGR00898, 2A0119, cation transport protein 4e-08
PRK12307426 PRK12307, PRK12307, putative sialic acid transport 1e-07
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 4e-07
PRK11102377 PRK11102, PRK11102, bicyclomycin/multidrug efflux 2e-06
PRK08633 1146 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola 8e-06
TIGR00900365 TIGR00900, 2A0121, H+ Antiporter protein 5e-05
PRK10473392 PRK10473, PRK10473, multidrug efflux system protei 1e-04
TIGR00895398 TIGR00895, 2A0115, benzoate transport 3e-04
PRK11043401 PRK11043, PRK11043, putative transporter; Provisio 8e-04
PRK11551406 PRK11551, PRK11551, putative 3-hydroxyphenylpropio 0.001
TIGR01299 742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 0.002
COG0738422 COG0738, FucP, Fucose permease [Carbohydrate trans 0.003
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information 
 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 83/393 (21%), Positives = 146/393 (37%), Gaps = 49/393 (12%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+       +  G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISP------TEIGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA             SLFG    FL    ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
           L A  +       P    +                      +E         K LL++  
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204

Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343
           L   + +              F+L    P     L  S  + G +L + G    + +L L
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257

Query: 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG 403
               +R+ G      +A +L I        +++        +   A ++    +  +   
Sbjct: 258 GRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESSLWLLV---ALLLLGFGAGLVFPA 313

Query: 404 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436
           L  L +    +++RG A+G+  T  SL  A GP
Sbjct: 314 LNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein Back     alignment and domain information
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport Back     alignment and domain information
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional Back     alignment and domain information
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein Back     alignment and domain information
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein Back     alignment and domain information
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport Back     alignment and domain information
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 473
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 100.0
PRK14995495 methyl viologen resistance protein SmvA; Provision 100.0
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 100.0
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 100.0
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 100.0
TIGR00891405 2A0112 putative sialic acid transporter. 100.0
TIGR00893399 2A0114 d-galactonate transporter. 100.0
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 100.0
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 100.0
KOG2615451 consensus Permease of the major facilitator superf 100.0
TIGR00900365 2A0121 H+ Antiporter protein. 100.0
PRK11663434 regulatory protein UhpC; Provisional 100.0
PRK03545390 putative arabinose transporter; Provisional 100.0
PRK10406432 alpha-ketoglutarate transporter; Provisional 100.0
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 100.0
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 100.0
PRK12307426 putative sialic acid transporter; Provisional 100.0
PRK10642490 proline/glycine betaine transporter; Provisional 100.0
PRK10213394 nepI ribonucleoside transporter; Reviewed 100.0
PRK09705393 cynX putative cyanate transporter; Provisional 100.0
TIGR00881379 2A0104 phosphoglycerate transporter family protein 100.0
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 100.0
PRK10504471 putative transporter; Provisional 100.0
PRK09952438 shikimate transporter; Provisional 100.0
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 100.0
PRK10091382 MFS transport protein AraJ; Provisional 100.0
PRK15075434 citrate-proton symporter; Provisional 100.0
PRK05122399 major facilitator superfamily transporter; Provisi 100.0
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 100.0
PRK10489417 enterobactin exporter EntS; Provisional 100.0
PRK10133438 L-fucose transporter; Provisional 100.0
PRK03633381 putative MFS family transporter protein; Provision 100.0
PRK03699394 putative transporter; Provisional 100.0
PRK12382392 putative transporter; Provisional 100.0
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 100.0
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 100.0
PRK10077479 xylE D-xylose transporter XylE; Provisional 100.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 100.0
TIGR00892455 2A0113 monocarboxylate transporter 1. 100.0
PRK15402406 multidrug efflux system translocase MdfA; Provisio 100.0
PRK11195393 lysophospholipid transporter LplT; Provisional 100.0
PRK11646400 multidrug resistance protein MdtH; Provisional 100.0
KOG0569485 consensus Permease of the major facilitator superf 100.0
PRK03893496 putative sialic acid transporter; Provisional 100.0
TIGR00898505 2A0119 cation transport protein. 100.0
TIGR00895398 2A0115 benzoate transport. 100.0
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 100.0
PRK15403413 multidrug efflux system protein MdtM; Provisional 100.0
TIGR00897402 2A0118 polyol permease family. This family of prot 100.0
PRK10054395 putative transporter; Provisional 99.98
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.98
PLN00028476 nitrate transmembrane transporter; Provisional 99.98
PRK11043401 putative transporter; Provisional 99.98
PRK09874408 drug efflux system protein MdtG; Provisional 99.98
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.97
KOG1330493 consensus Sugar transporter/spinster transmembrane 99.97
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.97
PRK11652394 emrD multidrug resistance protein D; Provisional 99.97
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.97
TIGR00896355 CynX cyanate transporter. This family of proteins 99.97
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.97
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.97
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.97
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.97
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.97
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.97
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.97
PRK11010491 ampG muropeptide transporter; Validated 99.97
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.96
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.96
PRK15011393 sugar efflux transporter B; Provisional 99.96
KOG0254513 consensus Predicted transporter (major facilitator 99.96
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.96
KOG2532466 consensus Permease of the major facilitator superf 99.96
PRK11902402 ampG muropeptide transporter; Reviewed 99.96
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.96
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.95
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.95
PRK09528420 lacY galactoside permease; Reviewed 99.95
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.95
TIGR00901356 2A0125 AmpG-related permease. 99.95
TIGR00805633 oat sodium-independent organic anion transporter. 99.95
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.95
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 99.95
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.95
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.95
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.94
KOG2533495 consensus Permease of the major facilitator superf 99.94
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.94
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.94
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.93
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.93
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.93
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 99.93
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.92
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.92
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.91
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 99.91
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.9
PRK09669444 putative symporter YagG; Provisional 99.89
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.89
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.88
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.88
PRK10429473 melibiose:sodium symporter; Provisional 99.87
PTZ00207591 hypothetical protein; Provisional 99.86
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.86
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.85
PF13347428 MFS_2: MFS/sugar transport protein 99.85
PRK09848448 glucuronide transporter; Provisional 99.85
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.83
KOG2325488 consensus Predicted transporter/transmembrane prot 99.82
PRK11462460 putative transporter; Provisional 99.82
COG2211467 MelB Na+/melibiose symporter and related transport 99.82
KOG2816463 consensus Predicted transporter ADD1 (major facili 99.81
KOG2563480 consensus Permease of the major facilitator superf 99.79
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.77
COG2270438 Permeases of the major facilitator superfamily [Ge 99.74
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.74
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.72
KOG3626735 consensus Organic anion transporter [Secondary met 99.69
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 99.66
PRK10642490 proline/glycine betaine transporter; Provisional 99.65
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.61
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.59
PRK15011393 sugar efflux transporter B; Provisional 99.57
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.55
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.55
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.54
PRK05122399 major facilitator superfamily transporter; Provisi 99.54
PRK09528420 lacY galactoside permease; Reviewed 99.53
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.53
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.5
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.5
PRK10489417 enterobactin exporter EntS; Provisional 99.49
PRK09705393 cynX putative cyanate transporter; Provisional 99.49
PRK09874408 drug efflux system protein MdtG; Provisional 99.48
PRK12382392 putative transporter; Provisional 99.47
TIGR00897402 2A0118 polyol permease family. This family of prot 99.47
PRK03633381 putative MFS family transporter protein; Provision 99.46
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 99.45
PRK03699394 putative transporter; Provisional 99.44
TIGR00893399 2A0114 d-galactonate transporter. 99.44
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.43
PRK03545390 putative arabinose transporter; Provisional 99.42
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 99.42
PRK03893496 putative sialic acid transporter; Provisional 99.4
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.4
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.39
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.37
TIGR00895398 2A0115 benzoate transport. 99.37
PRK09952438 shikimate transporter; Provisional 99.36
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.36
TIGR00900365 2A0121 H+ Antiporter protein. 99.35
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 99.35
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.34
PRK12307426 putative sialic acid transporter; Provisional 99.33
PRK11663434 regulatory protein UhpC; Provisional 99.33
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.32
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.32
TIGR00891405 2A0112 putative sialic acid transporter. 99.32
PRK10504471 putative transporter; Provisional 99.32
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.31
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.3
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.28
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.26
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.25
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.24
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.23
PRK15075434 citrate-proton symporter; Provisional 99.23
TIGR00898505 2A0119 cation transport protein. 99.22
KOG0569485 consensus Permease of the major facilitator superf 99.22
PLN00028476 nitrate transmembrane transporter; Provisional 99.22
PRK10054395 putative transporter; Provisional 99.21
PRK11010491 ampG muropeptide transporter; Validated 99.21
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.21
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 99.21
TIGR00896355 CynX cyanate transporter. This family of proteins 99.2
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.2
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.19
COG2270438 Permeases of the major facilitator superfamily [Ge 99.19
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.17
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 99.16
KOG0637498 consensus Sucrose transporter and related proteins 99.15
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.15
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.14
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.12
PRK10091382 MFS transport protein AraJ; Provisional 99.12
PRK11646400 multidrug resistance protein MdtH; Provisional 99.12
TIGR00901356 2A0125 AmpG-related permease. 99.12
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 99.12
PRK11902402 ampG muropeptide transporter; Reviewed 99.11
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.11
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 99.1
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.08
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.07
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.05
KOG3098461 consensus Uncharacterized conserved protein [Funct 99.05
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 99.05
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 99.05
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.04
PF13347428 MFS_2: MFS/sugar transport protein 99.04
PRK09848448 glucuronide transporter; Provisional 99.03
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.03
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.02
KOG3574510 consensus Acetyl-CoA transporter [Inorganic ion tr 99.0
PRK10429473 melibiose:sodium symporter; Provisional 99.0
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.0
PRK11043401 putative transporter; Provisional 98.99
PRK14995495 methyl viologen resistance protein SmvA; Provision 98.99
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.97
PRK10133438 L-fucose transporter; Provisional 98.96
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 98.96
PRK09669444 putative symporter YagG; Provisional 98.95
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.94
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 98.94
PRK11195393 lysophospholipid transporter LplT; Provisional 98.94
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 98.93
KOG3762618 consensus Predicted transporter [General function 98.89
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 98.89
PRK15462 493 dipeptide/tripeptide permease D; Provisional 98.89
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 98.88
PRK09584 500 tppB putative tripeptide transporter permease; Rev 98.87
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 98.86
COG0477338 ProP Permeases of the major facilitator superfamil 98.83
TIGR00788468 fbt folate/biopterin transporter. The only functio 98.83
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 98.81
COG2211467 MelB Na+/melibiose symporter and related transport 98.76
PRK10207 489 dipeptide/tripeptide permease B; Provisional 98.75
PRK11652 394 emrD multidrug resistance protein D; Provisional 98.74
PRK11462460 putative transporter; Provisional 98.72
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 98.71
PRK15403 413 multidrug efflux system protein MdtM; Provisional 98.7
KOG3762618 consensus Predicted transporter [General function 98.66
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.65
KOG2532466 consensus Permease of the major facilitator superf 98.64
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 98.63
KOG3764464 consensus Vesicular amine transporter [Intracellul 98.62
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 98.61
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 98.6
TIGR00880141 2_A_01_02 Multidrug resistance protein. 98.58
PTZ00207 591 hypothetical protein; Provisional 98.52
PF13000544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 98.51
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.51
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 98.5
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 98.48
COG0738422 FucP Fucose permease [Carbohydrate transport and m 98.47
PF1283277 MFS_1_like: MFS_1 like family 98.46
KOG1330 493 consensus Sugar transporter/spinster transmembrane 98.46
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 98.43
TIGR00805 633 oat sodium-independent organic anion transporter. 98.39
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 98.34
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 98.33
COG3202509 ATP/ADP translocase [Energy production and convers 98.31
KOG0254513 consensus Predicted transporter (major facilitator 98.2
KOG3810433 consensus Micronutrient transporters (folate trans 98.1
KOG2816463 consensus Predicted transporter ADD1 (major facili 98.05
KOG2615451 consensus Permease of the major facilitator superf 98.05
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 98.03
KOG2533495 consensus Permease of the major facilitator superf 98.03
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 97.98
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 97.94
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 97.91
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 97.83
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 97.79
KOG3880409 consensus Predicted small molecule transporter inv 97.75
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 97.69
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 97.67
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 97.56
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 97.4
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 97.14
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 97.11
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 97.1
PF1283277 MFS_1_like: MFS_1 like family 97.03
KOG2563 480 consensus Permease of the major facilitator superf 96.98
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 96.98
KOG3097390 consensus Predicted membrane protein [Function unk 96.75
KOG2325 488 consensus Predicted transporter/transmembrane prot 96.68
KOG3098461 consensus Uncharacterized conserved protein [Funct 96.58
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 96.51
PRK03612521 spermidine synthase; Provisional 96.07
KOG2601503 consensus Iron transporter [Inorganic ion transpor 96.01
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 95.83
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 95.73
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 95.62
PRK03612 521 spermidine synthase; Provisional 95.48
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 95.29
COG0477 338 ProP Permeases of the major facilitator superfamil 94.99
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 94.08
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 93.97
KOG4830412 consensus Predicted sugar transporter [Carbohydrat 93.41
KOG3626 735 consensus Organic anion transporter [Secondary met 92.52
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 91.46
KOG0637498 consensus Sucrose transporter and related proteins 89.57
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 86.76
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 84.32
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-35  Score=264.82  Aligned_cols=357  Identities=20%  Similarity=0.209  Sum_probs=281.8

Q ss_pred             CCChHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhcccccchhhhhhhhHHHHHHHHHHHHHhhhhhhhhcccCCchhhH
Q 011997           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (473)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (473)
                      +..+..++.+.++.|............+|++.+|+|.+..+      .|+..++|.++..+++|+...+.||+.||++++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl   82 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLL   82 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            34567788888899999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHhhhcchhHhH-HHHhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 011997          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (473)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  195 (473)
                      ..+.++.++.+++++++||+.++++|++.|+..|.+.+. .++.+++.|+++|++++++...+..++.++|.+++.++.+
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999999999999999886 9999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccccccCCcchhHHHHHHHHHHHHH-HHHhhcccCcCCCCCCCcchhhhHHHhhHhHHHhhhhhcccCCc
Q 011997          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (473)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (473)
                             .+|||..|         ...+..+++.+ ..+..+|  |++.+++.+.                     +...
T Consensus       163 -------~~GWR~~F---------~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~---------------------~~~~  203 (394)
T COG2814         163 -------LFGWRATF---------LAIAVLALLALLLLWKLLP--PSEISGSLPG---------------------PLRT  203 (394)
T ss_pred             -------HhhHHHHH---------HHHHHHHHHHHHHHHHhCC--CccCCCCCCc---------------------chhH
Confidence                   55655555         66666666654 4556677  2211111100                     1112


Q ss_pred             cccccccchhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCCCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Q 011997          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (473)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~  354 (473)
                      ..+++|+|.++...+..++....++...+++..++.     +..|++....++.+..++++.++++. .++++.|| +.+
T Consensus       204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~-----~v~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~dr-~~~  276 (394)
T COG2814         204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLE-----SVAGFSVSAVSLVLLAFGIAGFIGNL-LGGRLADR-GPR  276 (394)
T ss_pred             HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHH-----HccCCCHhHHHHHHHHHHHHHHHHHH-HHhhhccc-cch
Confidence            456889999999999888888777777666665544     44699999999999999999999999 56666666 777


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHh
Q 011997          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (473)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (473)
                      +.+.....+..+....+.+...    +.+. .....++.++..............+ .-++.+..+.+++....++|.++
T Consensus       277 ~~l~~~~~l~a~~~l~l~~~~~----~~~~-~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~  350 (394)
T COG2814         277 RALIAALLLLALALLALTFTGA----SPAL-ALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL  350 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcc----hHHH-HHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH
Confidence            7777776666666655544321    2222 2222222333333333334444444 33589999999999999999999


Q ss_pred             hhhhhhHHHHHhhhccc
Q 011997          435 GPAGGGALFSWAQKRLD  451 (473)
Q Consensus       435 ~~~~~g~l~~~~g~~~~  451 (473)
                      |..++|.++|+.|....
T Consensus       351 GA~lGG~v~~~~g~~~~  367 (394)
T COG2814         351 GAALGGLVLDALGYAAT  367 (394)
T ss_pred             HHHHHHHHHHhhchHHH
Confidence            99999999999765543

>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>KOG3097 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query473
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2cfq_A417 Lactose permease; transport, transport mechanism, 5e-07
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 7e-06
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 3e-05
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 Back     alignment and structure
 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query473
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 100.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 100.0
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 100.0
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 100.0
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.98
2cfq_A417 Lactose permease; transport, transport mechanism, 99.96
2xut_A524 Proton/peptide symporter family protein; transport 99.94
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.58
2cfq_A417 Lactose permease; transport, transport mechanism, 99.46
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.46
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.32
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.3
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 98.99
2xut_A 524 Proton/peptide symporter family protein; transport 98.88
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-37  Score=301.67  Aligned_cols=375  Identities=12%  Similarity=0.028  Sum_probs=284.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhcccccchhhhhhhhHHHHHHHHHHHHHhhhhhhhhcccCCchhhHHHH
Q 011997           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (473)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (473)
                      ++.+..+++..+...++.....+.+|.+.+++ .+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            44556677788888889999999999999999 99998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc----cccHHHHHHHHHHHhhhcchhHhH-HHHhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 011997          120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (473)
Q Consensus       120 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  194 (473)
                      ++.+++.+++++    +++++.++++|+++|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    999999999999999998888775 999999999999999999999999999999999999988


Q ss_pred             cccccCCCccc-ccccccCCcchhHHHHHHHHHHHH-HHHHhhcccCcCCCCCCCcchhhhHHHhhHhHHHhhhhhcccC
Q 011997          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (473)
Q Consensus       195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (473)
                      +       .+| ||+.|         .+.++..++. ++..+.+||++++.+.+++++....++.+ ..++.+++....+
T Consensus       180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (451)
T 1pw4_A          180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-YNEKAEQELTAKQ  242 (451)
T ss_dssp             H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH
T ss_pred             H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-chhhhhccccccc
Confidence            7       566 77665         4555444443 44556788877654322211111100000 0000000111111


Q ss_pred             CccccccccchhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCCCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhh-
Q 011997          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-  351 (473)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~-  351 (473)
                      ...++.+|+|.++...+..++..........+.|.|+..     .+|+++.+.+...+..+++.+++.+ ..+++.||+ 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~  316 (451)
T 1pw4_A          243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-----VKHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVF  316 (451)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-----BSCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred             chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            114677889999988888888877777777788877653     3589999999999999999999988 555666777 


Q ss_pred             -hhhHHHHHHHHHHH-HHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHH
Q 011997          352 -GPIMVARIAGVLTI-PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  429 (473)
Q Consensus       352 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  429 (473)
                       ++|+.+..+..+.. +++..+.+..   .... .......++.+.+.....+....+..|.+|++.|+++.|+.+...+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  392 (451)
T 1pw4_A          317 RGNRGATGVFFMTLVTIATIVYWMNP---AGNP-TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  392 (451)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTTSCC---TTCH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhc---ccCH-HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence             78877776665554 4444333211   1122 2233344444555566677778899999999999999999999999


Q ss_pred             H-HHHhhhhhhhHHHHHhhh
Q 011997          430 L-FKAAGPAGGGALFSWAQK  448 (473)
Q Consensus       430 ~-g~~~~~~~~g~l~~~~g~  448 (473)
                      + |..++|.+.|.+.++.+.
T Consensus       393 ~~g~~~~~~~~g~l~~~~g~  412 (451)
T 1pw4_A          393 LGGSVAASAIVGYTVDFFGW  412 (451)
T ss_dssp             HHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHHHHHHHHhcCc
Confidence            9 999999999999998764
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 473
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 2e-12
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 2e-07
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 45/368 (12%), Positives = 91/368 (24%), Gaps = 28/368 (7%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174

Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 258
                     +     +       +  A  V + AF +     +        +   D  +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 318
             + + ++E   +    + +L N  L    I      L      +    +    K     
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285

Query: 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS 378
             S        A    +LL   +S   F        +       +   +    P      
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345

Query: 379 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA-AGPA 437
                 ++              +  + +       +   G A G       L  + A  A
Sbjct: 346 DMICMIVIGFL-------IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 438 GGGALFSW 445
             G    +
Sbjct: 399 IVGYTVDF 406
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query473
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 100.0
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.96
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.51
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 99.39
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-36  Score=287.55  Aligned_cols=381  Identities=12%  Similarity=0.015  Sum_probs=266.1

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhcccccchhhhhhhhHHHHHHHHHHHHHhhhhhhhhcccCCchhhHHHH
Q 011997           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (473)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (473)
                      |..+..++++.+..+++...+....|.+. |+|.+.+|      .|++.+++.+++.++++++|+++||+|||+++..+.
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   96 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   96 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            44444566667777777777887778664 68999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc----ccHHHHHHHHHHHhhhcchhHhH-HHHhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 011997          120 ASVVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (473)
Q Consensus       120 ~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  194 (473)
                      ++.+++.++++++    ++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+..+|..++|.+++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_          97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            9999999988876    47889999999999998887775 999999999999999999999999999999999998877


Q ss_pred             cccccCCCcccccccccCCcchhHHHHHHHHHHHH-HHHHhhcccCcCCCCCCCcchhhhHHHhhHhHHHhhhhhcccCC
Q 011997          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (473)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (473)
                      +.      ..+||+.+         ....+..++. ++..++.+|+|++......++... +..++..++.+++....+.
T Consensus       177 ~~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (447)
T d1pw4a_         177 AW------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQI  240 (447)
T ss_dssp             HH------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHH
T ss_pred             hh------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhH
Confidence            62      23455554         4444444333 445555666655433322211111 1111111111112222233


Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCCCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 011997          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (473)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  353 (473)
                      ..+..++++.++......++..........+.+.|+..     ..+++..+.+.......+..+++.+ ..+++.||.+|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  314 (447)
T d1pw4a_         241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-----VKHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFR  314 (447)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-----BSCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTST
T ss_pred             HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccc-----ccccccchhhhhhhcchhhhhhhhh-hhhhhhhhccc
Confidence            45567888888888887777777777777777777543     3588999999999999999999988 45555555555


Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHH-H
Q 011997          354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF-K  432 (473)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g-~  432 (473)
                      ++..........+............. .......+..+..++......+....+..|.+|++.||++.|+.+...+++ .
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~  393 (447)
T d1pw4a_         315 GNRGATGVFFMTLVTIATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  393 (447)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            44333222222222211111111111 222233344444455556667778888999999999999999999988875 5


Q ss_pred             HhhhhhhhHHHHHhhhcc
Q 011997          433 AAGPAGGGALFSWAQKRL  450 (473)
Q Consensus       433 ~~~~~~~g~l~~~~g~~~  450 (473)
                      .++|.+.|.+.|..|...
T Consensus       394 ~~~~~~~g~~~~~~g~~~  411 (447)
T d1pw4a_         394 VAASAIVGYTVDFFGWDG  411 (447)
T ss_dssp             HHHHHHHHHHHHSSCSHH
T ss_pred             HHHHHHHHHHHHHhChHH
Confidence            678999999999887544
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure