Citrus Sinensis ID: 012001
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RWU5 | 665 | F-box/LRR-repeat protein | yes | no | 0.983 | 0.699 | 0.573 | 1e-124 | |
| Q9C5D2 | 610 | F-box/LRR-repeat protein | no | no | 0.940 | 0.729 | 0.278 | 5e-33 | |
| Q9SKK0 | 628 | EIN3-binding F-box protei | no | no | 0.966 | 0.727 | 0.263 | 4e-23 | |
| P34284 | 466 | Uncharacterized F-box/LRR | yes | no | 0.691 | 0.701 | 0.252 | 1e-20 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | yes | no | 0.672 | 0.751 | 0.262 | 3e-20 | |
| Q5R3Z8 | 423 | F-box/LRR-repeat protein | yes | no | 0.636 | 0.711 | 0.257 | 5e-19 | |
| Q9UKC9 | 423 | F-box/LRR-repeat protein | yes | no | 0.636 | 0.711 | 0.257 | 6e-19 | |
| Q96IG2 | 436 | F-box/LRR-repeat protein | no | no | 0.636 | 0.690 | 0.262 | 1e-18 | |
| Q58DG6 | 436 | F-box/LRR-repeat protein | yes | no | 0.636 | 0.690 | 0.262 | 1e-18 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | no | no | 0.636 | 0.690 | 0.262 | 2e-18 |
| >sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 268/467 (57%), Positives = 339/467 (72%), Gaps = 2/467 (0%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+ + PFD LSEE++F ILD ++ +P KSFSLTC++FY +ES+HR LKPL ++
Sbjct: 3 KVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSD 62
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RY T LDL+ CPR D ALS+V S TLRS++LSRS F+ GL L
Sbjct: 63 YLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGP-TLRSLDLSRSGSFSAAGLLRLA 121
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
+ C L EIDLSN TEM DA AA +AEA++LERL L RCK++TD+GIG IA C+KL +
Sbjct: 122 LKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTV 181
Query: 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
LKWC+ V DLGV L+A+KC++IRTLDLSYLPIT KCL ++KLQ+LE+L+LEGC G+DD
Sbjct: 182 SLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDD 241
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLH 300
D L S+ + CKSLK L+ S CQN++H GL+SL+ GA YLQ+L L++ S +S D + L
Sbjct: 242 DSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLK 301
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
LQSI+ + C V G+KAIG SLKE+SLSKC VTDE LS +V K+LRKLD
Sbjct: 302 KVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLD 361
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
ITCCRK++ SI I +C L SL+ME C LVS EAF LIGQ+C+ LEELD+T+NE++D
Sbjct: 362 ITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDD 421
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467
EGLKSIS C LSSLKLGIC NITD+GL ++G CS L+ELDLYR V
Sbjct: 422 EGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSV 468
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 147/528 (27%), Positives = 237/528 (44%), Gaps = 83/528 (15%)
Query: 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA----ETLSRTSARY 70
L EE+I I L + P R + SL C+ + S+E R L+ + + +S S R+
Sbjct: 11 LPEELILEIFRRLESKP-NRDACSLVCKRWLSLERFSRTTLRIGASFSPDDFISLLSRRF 69
Query: 71 PFITQLDLS--------------------------------LCPRANDDALSIVSSSSWK 98
+IT + + L + + A ++ SSS
Sbjct: 70 LYITSIHVDERISVSLPSLSPSPKRKRGRDSSSPSSSKRKKLTDKTHSGAENVESSSLTD 129
Query: 99 LTLRSINLSRSRL----------FTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE 148
L ++ R+ + VGL SL C L +DL G +GD AA+ +
Sbjct: 130 TGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDL-QGCYVGDQGLAAVGK 188
Query: 149 -AKNLERLWLARCKLITDLG-IGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
K LE L L C+ +TD+G I + C + LK + + ++TDL +E V C+ +
Sbjct: 189 FCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEV 248
Query: 207 LDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI 265
L L I +K L V + L++L L+ C + D A+V C SL+ L L Q+
Sbjct: 249 LYLDSEYIHDKGLIAVAQGCHRLKNLKLQ-CVSVTDVAFAAVGELCTSLERLALYSFQHF 307
Query: 266 SHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCP-VARSGIKAI 323
+ G+ ++ KG+ L+ L L+ ++VS L H L+ ++ C + GI+AI
Sbjct: 308 TDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAI 367
Query: 324 GNWHGSLKELSL--------------------------SKCSGVTDEELSFVVQSHKELR 357
G LKEL+L CSG+ D + + + + L+
Sbjct: 368 GKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLK 427
Query: 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE-N 416
KL I C +I I SI K C SLT L + C V +A + IG+ C L++L+++ N
Sbjct: 428 KLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCS-LQQLNVSGCN 486
Query: 417 EVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
+++D G+ +I+R C +L+ L + + NI D L +G C MLK+L L
Sbjct: 487 QISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVL 534
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 231/551 (41%), Gaps = 94/551 (17%)
Query: 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIES--RHRKILKPL----- 58
+K D L +E +F I L+ P R + + + + ++ S R ++I P
Sbjct: 58 EKKPVSIDVLPDECLFEIFRRLSG-PQERSACAFVSKQWLTLVSSIRQKEIDVPSKITED 116
Query: 59 ---CAETLSRT----SARYPFITQLDLSLCPRANDDALSIVSSSSWK---LTLRSINLSR 108
C LSR+ A + + + R LSI S+S K L LRSI S
Sbjct: 117 GDDCEGCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAKVSDLGLRSIGRSC 176
Query: 109 SRL----------FTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA-KNLERLWL 157
L T GL + C L +++L+ + + D AIA++ NL L L
Sbjct: 177 PSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTL 236
Query: 158 ARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV---------ELVALKCQEIRTLD 208
C I D G+ IA C KLK + +K C V D G+ L LK Q + D
Sbjct: 237 EACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQMLNVTD 296
Query: 209 LSY-------LPITEKCLPPV--------------VKLQYLEDLVLEGCHGIDDDGLASV 247
+S L IT+ L + V LQ L L + C G+ D GL SV
Sbjct: 297 VSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQGVTDMGLESV 356
Query: 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL-------ILAYSFWVSA------- 293
C ++K +SK +S GL S K + L+ L + + F+ S
Sbjct: 357 GKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGFFGSLLNCGEKL 416
Query: 294 ---DLSKCLH------NFPM------LQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSK 337
L CL P L+S+ +CP + + AIG L+++ L
Sbjct: 417 KAFSLVNCLSIRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQLEDIDLCG 476
Query: 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT-KTCTSLTSLRMECCKLVSWE 396
G+T+ ++QS L K++ + C +T I++IT + +L L ++ C ++
Sbjct: 477 LKGITESGFLHLIQS--SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDA 534
Query: 397 AFVLIGQQCQYLEELDITENEVNDEGLKSISRCS--KLSSLKLGICSNITDEGLKHVGST 454
+ V I CQ L +LDI++ ++D G+++++ KL L + CS +TD+ L +
Sbjct: 535 SLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGL 594
Query: 455 CSMLKELDLYR 465
S L L+L +
Sbjct: 595 GSTLLGLNLQQ 605
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Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene. Arabidopsis thaliana (taxid: 3702) |
| >sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 167/368 (45%), Gaps = 41/368 (11%)
Query: 96 SWK-LTLRSINLSRSRLFT------KVGLSSLTVNCR-FLTEIDLSNGTEMGDAAAAAI- 146
SW L L N R LFT + +L C FL E+ L + D+A
Sbjct: 86 SWSILALDGSNWQRVDLFTFQRDVKTAVVENLARRCGGFLKELSLKGCENVHDSALRTFT 145
Query: 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
+ NLE L L RCK +TD + C KL L L+ C +TD ++ + C +
Sbjct: 146 SRCPNLEHLSLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSY 205
Query: 207 LDLSYL-PITEKCLPPVV-KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN 264
L++S+ I ++ + ++ + L+ L+L GC G+ ++ SVE ++K LNL +C
Sbjct: 206 LNISWCDAIQDRGVQIILSNCKSLDTLILRGCEGLTENVFGSVEAHMGAIKKLNLLQCFQ 265
Query: 265 ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG 324
++ + + ++ GA L+ L C+ N ++ + ++G
Sbjct: 266 LTDITVQNIANGATALEYL--------------CMSNCNQ----------ISDRSLVSLG 301
Query: 325 NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384
+LK L LS C+ + D + + ++L +LD+ C I+ +INS+ CT+L
Sbjct: 302 QHSHNLKVLELSGCTLLGDNGFIPLARGCRQLERLDMEDCSLISDHTINSLANNCTALRE 361
Query: 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITE----NEVNDEGLKSISRCSKLSSLKLGIC 440
L + C+L++ E+ + ++ E L++ E ++ D L + C L + L C
Sbjct: 362 LSLSHCELITDESIQNLAS--KHRETLNVLELDNCPQLTDSTLSHLRHCKALKRIDLYDC 419
Query: 441 SNITDEGL 448
N++ E +
Sbjct: 420 QNVSKEAI 427
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Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 164/351 (46%), Gaps = 33/351 (9%)
Query: 126 FLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK 184
FL ++ L +GD++ A+ +N+E L L C ITD ++ C KLK L L
Sbjct: 79 FLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT 138
Query: 185 WCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVK-LQYLEDLVLEGCHGIDDD 242
C+ VT+ ++ ++ C+ + L+LS+ IT++ + +V+ + L+ L+L GC ++D+
Sbjct: 139 SCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDE 198
Query: 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHN 301
L ++ C L +LNL C I+ G+ + +G LQ L L+ S A L+ N
Sbjct: 199 ALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLN 258
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
P LQ L ++CS +TD + + ++ EL K+D+
Sbjct: 259 CPRLQV-------------------------LEAARCSHLTDAGFTLLARNCHELEKMDL 293
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE---- 417
C IT +++ ++ C L +L + C+L++ E + + E L + E +
Sbjct: 294 EECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRVLELDNCLL 353
Query: 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468
V D L+ + C L L+L C +T G+K + + +K + VT
Sbjct: 354 VTDASLEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVT 404
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Mus musculus (taxid: 10090) |
| >sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 33/334 (9%)
Query: 126 FLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK 184
FL ++ L +GD++ A+ +N+E L L C ITD ++ C KLK L L
Sbjct: 79 FLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT 138
Query: 185 WCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVK-LQYLEDLVLEGCHGIDDD 242
C+ +T+ ++ ++ C+ + L+LS+ IT+ + +V+ + L+ L+L GC ++D+
Sbjct: 139 SCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDE 198
Query: 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHN 301
L ++ C L +LNL C I+ G+ + +G LQ L L+ S A L+ N
Sbjct: 199 ALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLN 258
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
P LQ L ++CS +TD + + ++ EL K+D+
Sbjct: 259 CPRLQI-------------------------LEAARCSHLTDAGFTLLARNCHELEKMDL 293
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE---- 417
C IT +++ ++ C L +L + C+L++ + + + E L + E +
Sbjct: 294 EECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLL 353
Query: 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHV 451
+ D L+ + C L L+L C +T G+K +
Sbjct: 354 ITDVALEHLENCRGLERLELYDCQQVTRAGIKRM 387
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Pongo abelii (taxid: 9601) |
| >sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 33/334 (9%)
Query: 126 FLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK 184
FL ++ L +GD++ A+ +N+E L L C ITD ++ C KLK L L
Sbjct: 79 FLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT 138
Query: 185 WCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVK-LQYLEDLVLEGCHGIDDD 242
C+ +T+ ++ ++ C+ + L+LS+ IT+ + +V+ + L+ L+L GC ++D+
Sbjct: 139 SCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDE 198
Query: 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHN 301
L ++ C L +LNL C I+ G+ + +G LQ L L+ S A L+ N
Sbjct: 199 ALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLN 258
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
P LQ L ++CS +TD + + ++ EL K+D+
Sbjct: 259 CPRLQI-------------------------LEAARCSHLTDAGFTLLARNCHELEKMDL 293
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE---- 417
C IT +++ ++ C L +L + C+L++ + + + E L + E +
Sbjct: 294 EECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLL 353
Query: 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHV 451
+ D L+ + C L L+L C +T G+K +
Sbjct: 354 ITDVALEHLENCRGLERLELYDCQQVTRAGIKRM 387
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication. Homo sapiens (taxid: 9606) |
| >sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 154/312 (49%), Gaps = 11/312 (3%)
Query: 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
F+ +L L C D+AL + + + + +NL+ T +SL+ C L +D
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEV--LNLNGCTKTTDATCTSLSKFCSKLRHLD 149
Query: 132 LSNGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT 190
L++ T + + + A++E LE+L ++ C +T GI + C LK L LK C ++
Sbjct: 150 LASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLE 209
Query: 191 DLGVELVALKCQEIRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVE 248
D ++ + C E+ TL+L + L IT++ L + + L+ L GC I D L ++
Sbjct: 210 DEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALG 269
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQS 307
+C L+ L +++C ++ VG ++L + L+++ L ++ + L + + P LQ
Sbjct: 270 QNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQV 329
Query: 308 IKFEDCP-VARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
+ C + GI+ +GN H L+ + L C +TD L + H L ++++
Sbjct: 330 LSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHS-LERIELYD 388
Query: 364 CRKITYASINSI 375
C++IT A I +
Sbjct: 389 CQQITRAGIKRL 400
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Homo sapiens (taxid: 9606) |
| >sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 154/312 (49%), Gaps = 11/312 (3%)
Query: 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
F+ +L L C D+AL + + + + +NL+ T +SL+ C L +D
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEV--LNLNGCTKTTDATCTSLSKFCSKLRHLD 149
Query: 132 LSNGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT 190
L++ T + + + A++E LE+L ++ C +T GI + C LK L LK C ++
Sbjct: 150 LASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLE 209
Query: 191 DLGVELVALKCQEIRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVE 248
D ++ + C E+ TL+L + L IT++ L + + L+ L GC I D L ++
Sbjct: 210 DEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALG 269
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQS 307
+C L+ L +++C ++ VG ++L + L+++ L ++ + L + + P LQ
Sbjct: 270 QNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQV 329
Query: 308 IKFEDCP-VARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
+ C + GI+ +GN H L+ + L C +TD L + H L ++++
Sbjct: 330 LSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHS-LERIELYD 388
Query: 364 CRKITYASINSI 375
C++IT A I +
Sbjct: 389 CQQITRAGIKRL 400
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Bos taurus (taxid: 9913) |
| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 11/312 (3%)
Query: 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
F+ +L L C D+AL + + + + S+N T +SL+ C L +D
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKT--TDATCTSLSKFCSKLRHLD 149
Query: 132 LSNGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT 190
L++ T + + + A++E LE+L ++ C +T GI + C LK L LK C ++
Sbjct: 150 LASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLE 209
Query: 191 DLGVELVALKCQEIRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVE 248
D ++ + C E+ TL+L + L IT++ L + + L+ L GC I D L ++
Sbjct: 210 DEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALG 269
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQS 307
+C L+ L +++C ++ VG ++L + L+++ L ++ + L + + P LQ
Sbjct: 270 QNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQV 329
Query: 308 IKFEDCP-VARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
+ C + GI+ +GN H L+ + L C +TD L + H L ++++
Sbjct: 330 LSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHS-LERIELYD 388
Query: 364 CRKITYASINSI 375
C++IT A I +
Sbjct: 389 CQQITRAGIKRL 400
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | ||||||
| 224146675 | 649 | predicted protein [Populus trichocarpa] | 0.966 | 0.704 | 0.700 | 1e-177 | |
| 224140535 | 668 | predicted protein [Populus trichocarpa] | 0.966 | 0.684 | 0.659 | 1e-164 | |
| 297745808 | 702 | unnamed protein product [Vitis vinifera] | 0.978 | 0.659 | 0.637 | 1e-164 | |
| 225434419 | 668 | PREDICTED: F-box/LRR-repeat protein 3-li | 0.983 | 0.696 | 0.635 | 1e-164 | |
| 449463292 | 663 | PREDICTED: F-box/LRR-repeat protein 3-li | 0.964 | 0.687 | 0.624 | 1e-163 | |
| 449530965 | 661 | PREDICTED: LOW QUALITY PROTEIN: F-box/LR | 0.964 | 0.689 | 0.620 | 1e-163 | |
| 255571507 | 669 | F-box protein, atfbl3, putative [Ricinus | 0.980 | 0.693 | 0.645 | 1e-162 | |
| 224091068 | 666 | predicted protein [Populus trichocarpa] | 0.964 | 0.684 | 0.649 | 1e-159 | |
| 225439576 | 663 | PREDICTED: F-box/LRR-repeat protein 3 [V | 0.978 | 0.698 | 0.629 | 1e-153 | |
| 356551924 | 652 | PREDICTED: F-box/LRR-repeat protein 3-li | 0.966 | 0.700 | 0.601 | 1e-152 |
| >gi|224146675|ref|XP_002326094.1| predicted protein [Populus trichocarpa] gi|222862969|gb|EEF00476.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 321/458 (70%), Positives = 377/458 (82%), Gaps = 1/458 (0%)
Query: 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTS 67
N NPFDFL+EEIIF ILD+LN+DPFA+KSFSLTC+ FYSIES HRK LKPL AE L RT
Sbjct: 10 NCNPFDFLTEEIIFTILDYLNDDPFAKKSFSLTCKAFYSIESHHRKTLKPLRAELLLRTL 69
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFL 127
RYP I LDL++CPR D L++VS + K L SINLSRSR FT +GLSSL +C L
Sbjct: 70 HRYPHIEHLDLTVCPRIEDRMLNVVSLAC-KDALCSINLSRSRFFTNIGLSSLVSSCFNL 128
Query: 128 TEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCI 187
EIDLSNG E+ D AAAAIAEAKNLE+LWLARCKLITDLGIG +A CRKL+L+CLKWC+
Sbjct: 129 VEIDLSNGVELNDLAAAAIAEAKNLEKLWLARCKLITDLGIGCVAVGCRKLRLICLKWCL 188
Query: 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247
+++DLGV+L+ALKC+EIR+LDLSYL ITEKCLP +++LQ+LEDLVLEGC GI+DDGL+++
Sbjct: 189 KISDLGVQLLALKCKEIRSLDLSYLQITEKCLPSILQLQHLEDLVLEGCLGINDDGLSTL 248
Query: 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307
+ SCKSLK N+S C N SHVGL SLI GA+ L++L LAY V+ADL+KCLHNF L S
Sbjct: 249 QQSCKSLKTFNMSNCHNHSHVGLLSLINGAENLRELTLAYGPSVTADLAKCLHNFSGLHS 308
Query: 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKI 367
+KF+ C V SGI+AIGNW SLKELS SKCSGV D+ LSF+VQ HKELRKLDITCCR I
Sbjct: 309 VKFDGCLVKCSGIRAIGNWPNSLKELSFSKCSGVADDSLSFLVQGHKELRKLDITCCRMI 368
Query: 368 TYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427
Y S++SIT +C SLTSLRME C LV EAFVL GQ+CQ +EELD+T+ +++DEGLKSIS
Sbjct: 369 MYDSVDSITSSCCSLTSLRMESCSLVPKEAFVLFGQRCQLMEELDVTDTKIDDEGLKSIS 428
Query: 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
RCSKLSSLKLGIC NITD GLKH+GS CS LKELDLYR
Sbjct: 429 RCSKLSSLKLGICMNITDNGLKHIGSRCSKLKELDLYR 466
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140535|ref|XP_002323638.1| predicted protein [Populus trichocarpa] gi|222868268|gb|EEF05399.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 302/458 (65%), Positives = 364/458 (79%), Gaps = 1/458 (0%)
Query: 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTS 67
NSN FD LSEEI+F ILD ++ +P RKSFSL C++FY ES+HRK LKPL E L R
Sbjct: 13 NSNLFDLLSEEIVFTILDFIDTNPLDRKSFSLVCKSFYITESKHRKNLKPLRQELLPRVL 72
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFL 127
RYP + LDLSLCPR ND++L+++S++ K +L SI+LSRSR F+ GL SL NC+ L
Sbjct: 73 NRYPHVNHLDLSLCPRINDNSLNVISNTC-KDSLNSIDLSRSRFFSYNGLMSLASNCKNL 131
Query: 128 TEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCI 187
IDLSN TE+ DAAAAA+AE KNLERLWL RCKLITD+GIG IA C+KL+L+ LKWCI
Sbjct: 132 VSIDLSNATELRDAAAAAVAEVKNLERLWLGRCKLITDMGIGCIAVGCKKLRLISLKWCI 191
Query: 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247
V+DLGV L+A+KC+EIR+LDLSYLPIT KCLP ++KLQ+LED+VLEGC GIDDD LA++
Sbjct: 192 GVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGIDDDSLAAL 251
Query: 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307
++ CKS+KAL++S CQ+ISHVGLSSLI GA LQQL L+YS V+ L+ L MLQS
Sbjct: 252 KHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALANSLKRLSMLQS 311
Query: 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKI 367
+K + C V +G+ AIGNW +L ELSLSKC GVTDE LS +V HK+L+KLDITCCRKI
Sbjct: 312 VKLDGCAVTSAGLTAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKI 371
Query: 368 TYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427
T SI IT +CT+LTSLRME C LV EAFVLIGQ+CQ+LEELD+T+NE++DEGLKSIS
Sbjct: 372 TDVSIAYITNSCTNLTSLRMESCTLVPSEAFVLIGQRCQFLEELDLTDNEIDDEGLKSIS 431
Query: 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
RCSKLSSLKLGIC NI+DEGL HVG CS L ELDLYR
Sbjct: 432 RCSKLSSLKLGICLNISDEGLSHVGMKCSKLTELDLYR 469
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745808|emb|CBI15864.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/464 (63%), Positives = 358/464 (77%), Gaps = 1/464 (0%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+++ +NPF +++EIIF ILD L +DPF+RKSFSL C++FYS+ESRHRK LKPL ++
Sbjct: 44 QQKQQRFTNPFTLVTDEIIFAILDFLGHDPFSRKSFSLVCKSFYSVESRHRKTLKPLRSD 103
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RYP I LDLSLCP D+ ++ S K TLRSI LS S F VG S L
Sbjct: 104 LLRRILLRYPVIDHLDLSLCPLNEGDSWDVILSLC-KSTLRSIKLSPSMFFANVGFSKLV 162
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
+NC L EIDLSN TE D+ AAAIA+AKNLERLWL RCKL++D+GIG IA CRKL+L+
Sbjct: 163 MNCSDLVEIDLSNATEFTDSGAAAIAKAKNLERLWLVRCKLVSDIGIGCIAVGCRKLRLI 222
Query: 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
LKWC+RV DLGV L+A+KC+EIR LDLSYLPIT+KCLP V++LQ+LEDLVL GC ID
Sbjct: 223 NLKWCLRVGDLGVGLIAMKCKEIRCLDLSYLPITKKCLPSVLQLQHLEDLVLVGCFHIDL 282
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301
DGL +++ CKSL+ LN+S C ISH GLS + GA+ L+Q ++Y V+ DL+KCL
Sbjct: 283 DGLTNLKQGCKSLEVLNMSNCPCISHYGLSFITNGAECLRQFNISYGPPVTLDLAKCLQY 342
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
F LQSI+ + C V SG+KAIGNW SLKELSLSKCSGVTDE LS +VQ H+ELRKLDI
Sbjct: 343 FSNLQSIRLDGCIVTCSGMKAIGNWCASLKELSLSKCSGVTDEGLSLIVQGHQELRKLDI 402
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421
TCCRKIT SINSIT +CT LTSLRME C LV EAFVLIGQ CQ+LEELD+T+NE++DE
Sbjct: 403 TCCRKITQVSINSITNSCTCLTSLRMESCSLVQSEAFVLIGQCCQFLEELDVTDNEIDDE 462
Query: 422 GLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
GLKSI+RCSKLSSLKLGIC ITD+G+ HVG+ C L E+DLYR
Sbjct: 463 GLKSIARCSKLSSLKLGICLKITDDGIAHVGTGCPKLTEIDLYR 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434419|ref|XP_002277506.1| PREDICTED: F-box/LRR-repeat protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/466 (63%), Positives = 359/466 (77%), Gaps = 1/466 (0%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+++ +NPF +++EIIF ILD L +DPF+RKSFSL C++FYS+ESRHRK LKPL ++
Sbjct: 10 QQKQQRFTNPFTLVTDEIIFAILDFLGHDPFSRKSFSLVCKSFYSVESRHRKTLKPLRSD 69
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RYP I LDLSLCP D+ ++ S K TLRSI LS S F VG S L
Sbjct: 70 LLRRILLRYPVIDHLDLSLCPLNEGDSWDVILSLC-KSTLRSIKLSPSMFFANVGFSKLV 128
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
+NC L EIDLSN TE D+ AAAIA+AKNLERLWL RCKL++D+GIG IA CRKL+L+
Sbjct: 129 MNCSDLVEIDLSNATEFTDSGAAAIAKAKNLERLWLVRCKLVSDIGIGCIAVGCRKLRLI 188
Query: 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
LKWC+RV DLGV L+A+KC+EIR LDLSYLPIT+KCLP V++LQ+LEDLVL GC ID
Sbjct: 189 NLKWCLRVGDLGVGLIAMKCKEIRCLDLSYLPITKKCLPSVLQLQHLEDLVLVGCFHIDL 248
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301
DGL +++ CKSL+ LN+S C ISH GLS + GA+ L+Q ++Y V+ DL+KCL
Sbjct: 249 DGLTNLKQGCKSLEVLNMSNCPCISHYGLSFITNGAECLRQFNISYGPPVTLDLAKCLQY 308
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
F LQSI+ + C V SG+KAIGNW SLKELSLSKCSGVTDE LS +VQ H+ELRKLDI
Sbjct: 309 FSNLQSIRLDGCIVTCSGMKAIGNWCASLKELSLSKCSGVTDEGLSLIVQGHQELRKLDI 368
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421
TCCRKIT SINSIT +CT LTSLRME C LV EAFVLIGQ CQ+LEELD+T+NE++DE
Sbjct: 369 TCCRKITQVSINSITNSCTCLTSLRMESCSLVQSEAFVLIGQCCQFLEELDVTDNEIDDE 428
Query: 422 GLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467
GLKSI+RCSKLSSLKLGIC ITD+G+ HVG+ C L E+DLYR +
Sbjct: 429 GLKSIARCSKLSSLKLGICLKITDDGIAHVGTGCPKLTEIDLYRCI 474
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463292|ref|XP_004149368.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/461 (62%), Positives = 367/461 (79%), Gaps = 5/461 (1%)
Query: 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSA 68
S+PFD L+EEIIF ILDHL++DPF+RKSFSL ++FY+ ES HR+ L+PL + + S
Sbjct: 19 SSPFDHLTEEIIFAILDHLHDDPFSRKSFSLLSKSFYAAESLHRRSLRPLHSHPIRTVSP 78
Query: 69 RYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLT 128
RYP I++LDL+LCP D L I S++WK TLRSI+LSRSR F+ VGLS+L +C L
Sbjct: 79 RYPSISKLDLTLCPHVEDSFL-ISVSTAWKTTLRSIDLSRSRSFSNVGLSNLVTSCTGLV 137
Query: 129 EIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR 188
EI+LSNG + D+ +AEAKNLE+LWL+RCK ITD+GIG +A C+KLKLLCL WC+
Sbjct: 138 EINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAVGCKKLKLLCLNWCLH 197
Query: 189 VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248
+TDLGV L+A KC+E+R+LDLS+LPITEKCLP +++LQ+LE+L+LE CHGIDD+GL +++
Sbjct: 198 ITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDEGLEALK 257
Query: 249 YSCK--SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY--SFWVSADLSKCLHNFPM 304
+CK SLK LNLS+C +ISH GLSSLI G++ LQ+L L+Y S ++ D++KCLHNF
Sbjct: 258 RNCKRNSLKFLNLSRCPSISHSGLSSLIIGSENLQKLNLSYGSSVSITTDMAKCLHNFSG 317
Query: 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364
LQSIK + C + SG+K I NW SLKELSLSKC+GVTDE LS +VQ HK+LRKLDITCC
Sbjct: 318 LQSIKLDCCSLTTSGVKTIANWRASLKELSLSKCAGVTDECLSILVQKHKQLRKLDITCC 377
Query: 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLK 424
RKITY SINSIT +C+ L SL+ME C LV EA+VLIGQ+C YLEELD+T+NE+++EGLK
Sbjct: 378 RKITYGSINSITSSCSFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLK 437
Query: 425 SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
SIS+CS+LS LKLGIC NI D+GL H+ S C +KELDLYR
Sbjct: 438 SISKCSRLSVLKLGICLNINDDGLCHIASGCPKIKELDLYR 478
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530965|ref|XP_004172462.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/459 (62%), Positives = 365/459 (79%), Gaps = 3/459 (0%)
Query: 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSA 68
S+PFD L+EEIIF ILDHL++DPF+RKS SL ++FY+ ES HR+ L+PL + + S
Sbjct: 19 SSPFDHLTEEIIFAILDHLHDDPFSRKSVSLLSKSFYAAESLHRRSLRPLHSHPIQTVSP 78
Query: 69 RYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLT 128
RYP I++LDL+LCP D L I S++WK TLRSI+LSRSR F+ VGLS+L +C L
Sbjct: 79 RYPSISKLDLTLCPHVEDSFL-ISVSTAWKTTLRSIDLSRSRSFSNVGLSNLVTSCTGLV 137
Query: 129 EIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR 188
EI+LSNG + D+ +AEAKNLE+LWL+RCK ITD+GIG +A C+KLKLLCL WC+
Sbjct: 138 EINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAVGCKKLKLLCLNWCLH 197
Query: 189 VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248
+TDLGV L+A KC+E+R+LDLS+LPITEKCLP +++LQ+LE+L+LE CHGIDD+GL +++
Sbjct: 198 ITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDEGLEALQ 257
Query: 249 YSCK--SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306
+CK SLK LNLS+C +ISH GLSSLI G++ LQ+L L+Y ++ D++KCLHNF LQ
Sbjct: 258 RNCKRNSLKFLNLSRCPSISHSGLSSLIIGSEDLQKLNLSYGSSITTDMAKCLHNFSGLQ 317
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
SIK + C + SG+K + NW SLKELSLSKC+GVTDE LS +VQ HK+LRKLDITCCRK
Sbjct: 318 SIKLDCCSLTTSGVKPLXNWRASLKELSLSKCAGVTDECLSILVQKHKQLRKLDITCCRK 377
Query: 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426
ITY SINSIT +C+ L SL+ME C LV EA+VLIGQ+C YLEELD+T+NE+++EGLKSI
Sbjct: 378 ITYGSINSITSSCSFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLKSI 437
Query: 427 SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
S+CS+LS LKLGIC NI D+GL H+ S C +KELDLYR
Sbjct: 438 SKCSRLSVLKLGICLNINDDGLCHIASACPKIKELDLYR 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571507|ref|XP_002526701.1| F-box protein, atfbl3, putative [Ricinus communis] gi|223534001|gb|EEF35723.1| F-box protein, atfbl3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 300/465 (64%), Positives = 370/465 (79%), Gaps = 1/465 (0%)
Query: 1 MEAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA 60
+E N+N FD LSEEIIF+IL+ L+ +P RKSFSL C++FY+IES+HRKILKPL
Sbjct: 7 IEFNTINNNNLFDLLSEEIIFSILEFLDTNPLDRKSFSLVCKSFYTIESKHRKILKPLRQ 66
Query: 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL 120
E L R RYP +T LDLSLCPR ND +L+I+S+S K +L+SI+LSRSR F+ GL+SL
Sbjct: 67 EHLPRILNRYPHVTHLDLSLCPRINDSSLTIISNSC-KNSLKSIDLSRSRFFSYNGLTSL 125
Query: 121 TVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKL 180
+NC+ L IDLSN TE+ DAAA+A+AEAKNLERLWL RCKLITD+G+G IA C+KL+L
Sbjct: 126 ALNCKNLVNIDLSNATELRDAAASAVAEAKNLERLWLGRCKLITDIGVGCIAVGCKKLRL 185
Query: 181 LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGID 240
+ LKWC+ VTDLGV L+A+KC+EIR+LDLSYLPIT KCLP ++KL+ LEDLVLEGC GID
Sbjct: 186 ISLKWCLGVTDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLKSLEDLVLEGCFGID 245
Query: 241 DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300
D+ L + ++ CKSLK L++S CQNISHVGLSSLI GA L+QL LAY V+ L+ L
Sbjct: 246 DESLTAFKHGCKSLKTLDMSSCQNISHVGLSSLIGGAGGLEQLTLAYGSPVTLALANSLK 305
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
+LQS+K + C + +G+KA+GNW SLKELSLSKC GVTDE LS +V H++LRKLD
Sbjct: 306 QLSVLQSVKLDGCMITSAGLKALGNWCISLKELSLSKCVGVTDEGLSCLVTKHRDLRKLD 365
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
ITCCRKIT SI+ IT +CT+LTSLRME C LVS EAFVLIGQ+CQ LEELD+T+NE++D
Sbjct: 366 ITCCRKITDVSISHITSSCTNLTSLRMESCTLVSREAFVLIGQRCQLLEELDLTDNEIDD 425
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
EGLKS+S C KL+SLKLGIC NI+DEGL +VG C+ L ELDLYR
Sbjct: 426 EGLKSVSSCLKLASLKLGICLNISDEGLAYVGKHCTRLTELDLYR 470
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091068|ref|XP_002309168.1| predicted protein [Populus trichocarpa] gi|222855144|gb|EEE92691.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 297/457 (64%), Positives = 359/457 (78%), Gaps = 1/457 (0%)
Query: 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSA 68
+N FD LSEEIIF ILD N +PF RKSFSL C++FY ES+HRK LKPL E L R
Sbjct: 12 NNFFDLLSEEIIFTILDFTNTNPFDRKSFSLVCKSFYITESKHRKNLKPLRQEHLPRILN 71
Query: 69 RYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLT 128
RYP + LDLSLC R N+ +L+++S+ K +L SI+LSRSR F+ GL SL +NC+ L
Sbjct: 72 RYPNVNHLDLSLCLRLNNSSLTVISNIC-KDSLNSIDLSRSRSFSYNGLMSLALNCKNLV 130
Query: 129 EIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR 188
IDLSN TE+ DAAAAA+AEAKNLERLWL RCKLITD GIG IA C+KL+L+ LKWCI
Sbjct: 131 SIDLSNATELRDAAAAAVAEAKNLERLWLVRCKLITDTGIGCIAVGCKKLRLISLKWCIG 190
Query: 189 VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248
V+DLGV L+A+KC+EIR+LDLSYLPIT KCLP ++KLQYLE + LEGC GIDDD LA+++
Sbjct: 191 VSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQYLEHIALEGCFGIDDDSLAALK 250
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308
+ CKSLKAL++S CQNISHVGLSSL GA+ LQQL L Y V+ L+ L + +LQS+
Sbjct: 251 HGCKSLKALDMSSCQNISHVGLSSLTSGAEGLQQLTLGYGSPVTLALANSLRSLSILQSV 310
Query: 309 KFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
K + CPV +G+KAIGNW SL ELSLSKC GVTDE LS +V HK+L+KLDITCCRKIT
Sbjct: 311 KLDGCPVTSAGLKAIGNWCISLSELSLSKCLGVTDEGLSSLVTKHKDLKKLDITCCRKIT 370
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428
SI IT +CT+LTSLRME C LV EAFV IGQQCQ+LEELD+T+NE++D+GLKSIS+
Sbjct: 371 DVSIAYITSSCTNLTSLRMESCTLVPSEAFVFIGQQCQFLEELDLTDNEIDDKGLKSISK 430
Query: 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
CSKLSSLK+GIC NI+D+GL H+G CS L +LDLYR
Sbjct: 431 CSKLSSLKIGICLNISDKGLSHIGMKCSKLADLDLYR 467
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439576|ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera] gi|297735597|emb|CBI18091.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/467 (62%), Positives = 354/467 (75%), Gaps = 4/467 (0%)
Query: 4 KRKK---NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA 60
KR+K + N FD L+EEI+F ILD L+ +P +KSFSL C+ FY IESRHRK LKPL +
Sbjct: 2 KRQKGVVDENIFDVLTEEIVFTILDFLDPNPLDKKSFSLACKAFYGIESRHRKALKPLRS 61
Query: 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL 120
E L RYP + LDLSLCPR D++L+I+S K TLRSI+LS+SR F+ VGL +L
Sbjct: 62 EHLITVLKRYPHLEHLDLSLCPRITDNSLTIISVLC-KSTLRSIDLSQSRFFSHVGLWNL 120
Query: 121 TVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKL 180
NC L EIDLSN TE+ DA AAAIAEAKNLERLWLARCKLITD+GIG IA C+KL+
Sbjct: 121 ATNCSGLVEIDLSNATELRDAGAAAIAEAKNLERLWLARCKLITDMGIGCIAVGCKKLRS 180
Query: 181 LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGID 240
+ LKWC+ V DLGV L+A+KC++IR LDLSYLPIT KCLP +++LQYLEDL+L GC ID
Sbjct: 181 ISLKWCLGVGDLGVGLIAVKCKQIRHLDLSYLPITNKCLPCILQLQYLEDLILVGCFSID 240
Query: 241 DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300
DD L ++++ CKSLK L++S CQN+SHVGLSSL A LQQL LAY V+ L+ L
Sbjct: 241 DDSLVALKHGCKSLKKLDMSSCQNVSHVGLSSLTSDARSLQQLALAYGSPVTHALADSLQ 300
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
+ MLQSIK + C V +G+K IGN L+E+SLSKC GVTDE LS +V H++LRKLD
Sbjct: 301 DLSMLQSIKLDGCAVTYAGLKGIGNSCALLREVSLSKCLGVTDEGLSSLVMKHRDLRKLD 360
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
+TCCRKIT SI IT +C +LTSL+ME C LV EAFVLIGQ+C LEELD+T+NE++D
Sbjct: 361 VTCCRKITQVSIAYITNSCPALTSLKMESCTLVPSEAFVLIGQRCLCLEELDLTDNEIDD 420
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467
EGLKSISRC KL+SLKLGIC NITDEGL HVG CS L ELDLYR V
Sbjct: 421 EGLKSISRCFKLTSLKLGICLNITDEGLGHVGMCCSKLIELDLYRCV 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/459 (60%), Positives = 355/459 (77%), Gaps = 2/459 (0%)
Query: 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRT 66
K +N + L +E+++ ILDHL+ DPFARKS S +C++F+++E+ HR LKP E L RT
Sbjct: 9 KTTNLLNHLVKELLYAILDHLDEDPFARKSLSQSCKSFHALEATHRTNLKPRRLEFLPRT 68
Query: 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF 126
RY I+ LDL+LCP +D+ L +S + W +LRSI+LS+SRLF+ VGLS+L +NC
Sbjct: 69 LHRYRSISHLDLTLCPCVDDNTLKSLSLA-WNSSLRSIDLSKSRLFSHVGLSALAMNCTC 127
Query: 127 LTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWC 186
L E DLSN ++ D AA AIAEA NLERL L RCK ITDLGIG IA C KL+ + L+WC
Sbjct: 128 LVEADLSNRPDLTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWC 187
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLAS 246
IRVTD G L+A+KC+EIR+LDLSYLPITEKCL +++L++LEDL+LE C GI+D GLA+
Sbjct: 188 IRVTDFGAGLIAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDLILEHCLGIEDHGLAT 247
Query: 247 VEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306
++ SCKS+K LNLSKCQNI H+G++SL G+ L++LIL+ S V+ DL+KCL +F LQ
Sbjct: 248 LQASCKSMKMLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIVTTDLAKCLQSFSRLQ 307
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
S+K + C +SG+KAIGN SLKEL+LSKC GVTDE L F+VQ HK+L KLDITCC
Sbjct: 308 SVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQPHKDLEKLDITCCHT 367
Query: 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426
IT+ASI+S+T +C LTSLRME C LVS E F+ IG +CQ LEELD+T+ E++D+GL+SI
Sbjct: 368 ITHASISSLTNSCLRLTSLRMESCSLVSREGFLFIG-RCQLLEELDVTDTEIDDQGLQSI 426
Query: 427 SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
SRC+KLSSLKLGICS ITD GLKH+ S+CS LK+LDLYR
Sbjct: 427 SRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYR 465
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | ||||||
| TAIR|locus:2149805 | 665 | AT5G01720 "AT5G01720" [Arabido | 0.983 | 0.699 | 0.546 | 1.3e-125 | |
| TAIR|locus:2143320 | 642 | AT5G27920 "AT5G27920" [Arabido | 0.955 | 0.704 | 0.321 | 2e-63 | |
| TAIR|locus:505006471 | 610 | AT4G15475 "AT4G15475" [Arabido | 0.820 | 0.636 | 0.276 | 8.7e-31 | |
| TAIR|locus:2166978 | 405 | AT5G23340 [Arabidopsis thalian | 0.704 | 0.822 | 0.266 | 1.8e-21 | |
| UNIPROTKB|F1PWK1 | 422 | FBXL2 "Uncharacterized protein | 0.570 | 0.639 | 0.278 | 1.4e-20 | |
| UNIPROTKB|Q9UKC9 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.570 | 0.638 | 0.278 | 1.9e-20 | |
| UNIPROTKB|Q5R3Z8 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.570 | 0.638 | 0.278 | 1.9e-20 | |
| TAIR|locus:2145512 | 623 | EBF2 "EIN3-binding F box prote | 0.632 | 0.479 | 0.261 | 2e-20 | |
| UNIPROTKB|Q58DG6 | 436 | FBXL20 "F-box/LRR-repeat prote | 0.501 | 0.543 | 0.290 | 2.9e-20 | |
| UNIPROTKB|Q96IG2 | 436 | FBXL20 "F-box/LRR-repeat prote | 0.501 | 0.543 | 0.290 | 2.9e-20 |
| TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 255/467 (54%), Positives = 323/467 (69%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+ + PFD LSEE++F ILD ++ +P KSFSLTC++FY +ES+HR LKPL ++
Sbjct: 3 KVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSD 62
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RY T LDL+ CPR D ALS+V S TLRS++LSRS F+ GL L
Sbjct: 63 YLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGP-TLRSLDLSRSGSFSAAGLLRLA 121
Query: 122 VNCRFLTEIDLSNGTEMGDXXXXXXXXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXX 181
+ C L EIDLSN TEM D ++LERL L RCK++TD+GIG IA
Sbjct: 122 LKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTV 181
Query: 182 XXXXXIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
+ V DLGV L+A+KC++IRTLDLSYLPIT KCL ++KLQ+LE+L+LEGC G+DD
Sbjct: 182 SLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDD 241
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLH 300
D L S+ + CKSLK L+ S CQN++H GL+SL+ GA YLQ+L L++ S +S D + L
Sbjct: 242 DSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLK 301
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
LQSI+ + C V G+KAIG SLKE+SLSKC VTDE LS +V K+LRKLD
Sbjct: 302 KVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLD 361
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
ITCCRK++ SI I +C L SL+ME C LVS EAF LIGQ+C+ LEELD+T+NE++D
Sbjct: 362 ITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDD 421
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467
EGLKSIS C LSSLKLGIC NITD+GL ++G CS L+ELDLYR V
Sbjct: 422 EGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSV 468
|
|
| TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 148/460 (32%), Positives = 256/460 (55%)
Query: 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFIT 74
LSE+++ + + L DP RK++ L ++F ++S R ++ L E L +YP ++
Sbjct: 11 LSEDLLVRVYECL--DPPCRKTWRLISKDFLRVDSLTRTTIRILRVEFLPTLLFKYPNLS 68
Query: 75 QLDLSLCPRANDDA---LSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
LDLS+CP+ +DD L++ + S L ++S+NLSRS GL +L C L +D
Sbjct: 69 SLDLSVCPKLDDDVVLRLALDGAIS-TLGIKSLNLSRSTAVRARGLETLARMCHALERVD 127
Query: 132 LSNGTEMGDXXXXXXXXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXXXXXXXIRVTD 191
+S+ GD L L + +C ++D+G+ RI + ++D
Sbjct: 128 VSHCWGFGDREAAALSSATGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCMEISD 187
Query: 192 LGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSC 251
LG++L+ C+ +++LD+SYL IT + + L LE L + C IDD GL +E
Sbjct: 188 LGIDLLCKICKGLKSLDVSYLKITNDSIRSIALLVKLEVLDMVSCPLIDDGGLQFLENGS 247
Query: 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFW-VSADLSKCLHNFPMLQSIKF 310
SL+ +++++C +S GL S+++G +Q L ++ VS K + L++I
Sbjct: 248 PSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLKYIKGLKHLKTIWI 307
Query: 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYA 370
+ V+ S + ++ + SL E+ LS+C VTD + + ++ L+ L++ CC +T
Sbjct: 308 DGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDV 367
Query: 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE-NEVNDEGLKSISRC 429
+I+++ ++C +L +L++E C L++ + +G ++ELD+T+ VND GL+ IS+C
Sbjct: 368 AISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCYGVNDRGLEYISKC 427
Query: 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTF 469
S L LKLG+C+NI+D+G+ H+GS CS L ELDLYR F
Sbjct: 428 SNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGF 467
|
|
| TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 8.7e-31, P = 8.7e-31
Identities = 111/402 (27%), Positives = 193/402 (48%)
Query: 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTE 129
+P I L L CP N ++ + S + +L+S++L + + GL+++ C+ L E
Sbjct: 139 FPRIENLSLIWCP--NVSSVGLCSLAQKCTSLKSLDLQGCYVGDQ-GLAAVGKFCKQLEE 195
Query: 130 IDLS--NG-TEMGDXXXXXXXXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXXXXXXX 186
++L G T++G K+L+ + +A ITDL + + +
Sbjct: 196 LNLRFCEGLTDVG-VIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDSE 254
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL-QYLEDLVLEGCHGIDDDGLA 245
+ D G+ VA C ++ L L + +T+ V +L LE L L D G+
Sbjct: 255 Y-IHDKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMR 313
Query: 246 SVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL-HNFPM 304
++ K LK L LS C +S GL ++ G L+++ + + + + + P
Sbjct: 314 AIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPR 373
Query: 305 LQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
L+ + C + S ++ IG SL+ L L CSG+ D + + + + L+KL I
Sbjct: 374 LKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRR 433
Query: 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE-NEVNDEG 422
C +I I SI K C SLT L + C V +A + IG+ C L++L+++ N+++D G
Sbjct: 434 CYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCS-LQQLNVSGCNQISDAG 492
Query: 423 LKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
+ +I+R C +L+ L + + NI D L +G C MLK+L L
Sbjct: 493 ITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVL 534
|
|
| TAIR|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 96/360 (26%), Positives = 162/360 (45%)
Query: 97 WKLTLRSINLSRSRLFTKVGLSSLT-VNCRF--LTEIDLSNGTEMG-------DXXXXXX 146
W L L+S + R +L + G L + RF + E+DLS
Sbjct: 38 W-LNLQSTD--RKKLAARAGPHMLRRLASRFTQIVELDLSQSISRSFYPGVTDSDLAVIS 94
Query: 147 XXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXXXXXXXIRVTDLGVELVALKCQEIRT 206
K L L L CK ITD G+ I +++D G+ VA C ++R
Sbjct: 95 EGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRA 154
Query: 207 LDLSYLP-ITEKCLPPVV-KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN 264
L L+ IT++ L + + + LE L L+GC I D GLA + C+ +K+L+++KC N
Sbjct: 155 LHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSN 214
Query: 265 ISHVGLSSLIKG-ADYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDC-PVARSGIK 321
+ G+SS+ K A L+ L L + V + L F L+++ C ++ I
Sbjct: 215 VGDAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIM 274
Query: 322 AIGN-WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI-TKTC 379
+ + SLK L + C ++D LS +++ K L LDI CC ++T + + +
Sbjct: 275 LLADSCKDSLKNLRMDWCLNISDSSLSCILKQCKNLEALDIGCCEEVTDTAFRDLGSDDV 334
Query: 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI------TENEVNDEGLKSISRCSKLS 433
L L++ C ++ + +C LE +D+ TE ++ GL+ +C K++
Sbjct: 335 LGLKVLKVSNCTKITVTGIGKLLDKCSSLEYIDVRSLPHVTEVRCSEAGLE-FPKCCKVN 393
|
|
| UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 78/280 (27%), Positives = 136/280 (48%)
Query: 194 VELVALKCQE-IRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYS 250
VE ++ +C +R L L + + + L + + +E L L GC I D S+
Sbjct: 68 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 127
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIK 309
C LK L+L+ C +I++ L + +G L+ L L++ ++ D + + L+++
Sbjct: 128 CSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALL 187
Query: 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
C + +K I N+ L L+L CS +TDE + + + L+ L ++ C +T
Sbjct: 188 LRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLT 247
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSIS 427
AS+ ++ C L L C ++ F L+ + C LE++D+ E + D L +S
Sbjct: 248 DASLTALALNCPRLQILEAARCSHLTDAGFTLLARNCHDLEKMDLEECILITDSTLIQLS 307
Query: 428 -RCSKLSSLKLGICSNITDEGLKHVG-STCS--MLKELDL 463
C KL +L L C ITD+G+ H+ STC L+ L+L
Sbjct: 308 VHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLEL 347
|
|
| UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 78/280 (27%), Positives = 136/280 (48%)
Query: 194 VELVALKCQE-IRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYS 250
VE ++ +C +R L L + + + L + + +E L L GC I D S+
Sbjct: 69 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 128
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIK 309
C LK L+L+ C +I++ L + +G L+ L L++ ++ D + + L+++
Sbjct: 129 CSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALL 188
Query: 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
C + +K I N+ L L+L CS +TDE + + + L+ L ++ C +T
Sbjct: 189 LRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLT 248
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSIS 427
AS+ ++ C L L C ++ F L+ + C LE++D+ E + D L +S
Sbjct: 249 DASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLS 308
Query: 428 -RCSKLSSLKLGICSNITDEGLKHVG-STCS--MLKELDL 463
C KL +L L C ITD+G+ H+ STC L+ L+L
Sbjct: 309 IHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLEL 348
|
|
| UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 78/280 (27%), Positives = 136/280 (48%)
Query: 194 VELVALKCQE-IRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYS 250
VE ++ +C +R L L + + + L + + +E L L GC I D S+
Sbjct: 69 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 128
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIK 309
C LK L+L+ C +I++ L + +G L+ L L++ ++ D + + L+++
Sbjct: 129 CSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALL 188
Query: 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
C + +K I N+ L L+L CS +TDE + + + L+ L ++ C +T
Sbjct: 189 LRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLT 248
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSIS 427
AS+ ++ C L L C ++ F L+ + C LE++D+ E + D L +S
Sbjct: 249 DASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLS 308
Query: 428 -RCSKLSSLKLGICSNITDEGLKHVG-STCS--MLKELDL 463
C KL +L L C ITD+G+ H+ STC L+ L+L
Sbjct: 309 IHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLEL 348
|
|
| TAIR|locus:2145512 EBF2 "EIN3-binding F box protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 82/314 (26%), Positives = 141/314 (44%)
Query: 163 ITDLGIGRIAAXXXXXXXXXXXXXIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPP 221
+TD+G+G +A V+DLG+ +A C I LDLS P IT+ L
Sbjct: 154 VTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVA 213
Query: 222 VVK-LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA-DY 279
+ + L DL ++ C G+ ++GL ++ C +L+++++ C I G++ L+ A Y
Sbjct: 214 IAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAGSY 273
Query: 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHG--SLKELSLS 336
L ++ L L+ H + + V G +GN G LK LS+
Sbjct: 274 LTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVM 333
Query: 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE 396
C G+TD L V +L+ + + C ++ + ++ K+ SL SL++E C ++
Sbjct: 334 SCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEECHRIN-- 391
Query: 397 AFVLIG--QQC-QYLEELDITE----NEVNDEGLKSISRCSKLSSLKLGICSNITDEGLK 449
F L+G C L+ + ++ N E CS L SL + C D L
Sbjct: 392 QFGLMGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLA 451
Query: 450 HVGSTCSMLKELDL 463
+G C L++++L
Sbjct: 452 FLGKFCHQLQDVEL 465
|
|
| UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 70/241 (29%), Positives = 116/241 (48%)
Query: 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILA 286
+L L L GC G+ D+ L + +C++++ LNL+ C + +SL K L+ L LA
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLA 151
Query: 287 YSFWVSADLSKCL-HNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344
++ K L P+L+ + C V + GI+A+ G LK L L C+ + DE
Sbjct: 152 SCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDE 211
Query: 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ 404
L ++ EL L++ C +IT + +I + C L SL C ++ +GQ
Sbjct: 212 ALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQN 271
Query: 405 CQYLEELDITE-NEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462
C L L++ +++ D G +++R C +L + L C ITD L + C L+ L
Sbjct: 272 CPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331
Query: 463 L 463
L
Sbjct: 332 L 332
|
|
| UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 70/241 (29%), Positives = 116/241 (48%)
Query: 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILA 286
+L L L GC G+ D+ L + +C++++ LNL+ C + +SL K L+ L LA
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLA 151
Query: 287 YSFWVSADLSKCL-HNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344
++ K L P+L+ + C V + GI+A+ G LK L L C+ + DE
Sbjct: 152 SCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDE 211
Query: 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ 404
L ++ EL L++ C +IT + +I + C L SL C ++ +GQ
Sbjct: 212 ALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQN 271
Query: 405 CQYLEELDITE-NEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462
C L L++ +++ D G +++R C +L + L C ITD L + C L+ L
Sbjct: 272 CPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331
Query: 463 L 463
L
Sbjct: 332 L 332
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RWU5 | FBL3_ARATH | No assigned EC number | 0.5738 | 0.9830 | 0.6992 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 473 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-13 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 9e-13 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 3e-10 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 9e-10 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 4e-09 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 7/181 (3%)
Query: 195 ELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254
+L+ + + L+L PI++ L + L+ L+L G IDD+GL ++ SC +L
Sbjct: 21 QLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNL 80
Query: 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAY----SFWVSADLSKCLHNFPMLQSIKF 310
+ L+L C+NI+ G+ +L LQ + L LS N LQ++ F
Sbjct: 81 QVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140
Query: 311 EDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQSH--KELRKLDITCCRKI 367
C V G+ + + SL+ LSL+ C +TD+ + ++ S+ L L+ C I
Sbjct: 141 AGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200
Query: 368 T 368
T
Sbjct: 201 T 201
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 9e-13
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
L+ ++ CP++ + + N + LK+L L + DE L + QS L+ LD
Sbjct: 26 LHSGLEWLELYMCPISDPPLDQLSNCN-KLKKLILPGSKLIDDEGLIALAQSCPNLQVLD 84
Query: 361 ITCCRKITYASINSITKTCTSLTSL---RMECCKLVSWEAFVLIGQQCQYLEELDITENE 417
+ C IT + I ++ C L ++ R L++ + +G+ C +L+ + +
Sbjct: 85 LRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCD 144
Query: 418 VNDEGLKSI-SRCSK-LSSLKLGICSNITDEGLKHV 451
V D+G+ + S CSK L L L C N+TD+ + +
Sbjct: 145 VTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAI 180
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLD 208
L++L L KLI D G+ +A C L++L L+ C +TD G+ +A C +++T++
Sbjct: 51 CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTIN 110
Query: 209 LSYLP----ITEKCLPPVVKLQ-YLEDLVLEGCHGIDDDGLASVEYSC-KSLKALNLSKC 262
L IT+ L + K +L+ + GC + D G+ + C KSL+ L+L+ C
Sbjct: 111 LGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCD-VTDKGVWELASGCSKSLERLSLNNC 169
Query: 263 QNISHVGLSSL 273
+N++ + ++
Sbjct: 170 RNLTDQSIPAI 180
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 331 KELSLSKCSGVTDEELSFVVQS-HKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389
L K +T +S +++ H L L++ C ++ ++ C L L +
Sbjct: 4 LLFILHKLGQITQSNISQLLRILHSGLEWLELYMCPISD-PPLDQLSN-CNKLKKLILPG 61
Query: 390 CKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSISR-CSKLSSLKLGI---CSNIT 444
KL+ E + + Q C L+ LD+ E + D G+ +++ C KL ++ LG IT
Sbjct: 62 SKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLIT 121
Query: 445 DEGLKHVGSTCSMLKELDL 463
D L +G C+ L+ +
Sbjct: 122 DVSLSALGKNCTFLQTVGF 140
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 38/207 (18%)
Query: 76 LDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG 135
L+L +CP + D L +S+ L+ + L S+L GL +L +C L +DL
Sbjct: 33 LELYMCPIS-DPPLDQLSNC---NKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLR-- 86
Query: 136 TEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKW---CIRVTDL 192
C+ ITD GI +A C KL+ + L +TD+
Sbjct: 87 -----------------------ACENITDSGIVALATNCPKLQTINLGRHRNGHLITDV 123
Query: 193 GVELVALKCQEIRTLDLSYLPITEKCLPPVV--KLQYLEDLVLEGCHGIDDDGLASVEYS 250
+ + C ++T+ + +T+K + + + LE L L C + D + ++ S
Sbjct: 124 SLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILAS 183
Query: 251 --CKSLKALNLSKCQNISHVGLSSLIK 275
+L L C I S +I
Sbjct: 184 NYFPNLSVLEFRGCPLI--TDFSRIIL 208
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 100.0 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.95 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.94 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.93 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.88 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.87 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.79 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.74 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.73 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.72 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.64 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.63 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.56 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.5 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.42 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.39 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.38 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.31 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.28 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.24 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.04 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 99.03 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.02 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.0 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.97 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.96 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.9 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.87 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.81 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.64 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.64 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.59 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.58 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.55 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.53 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.45 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.44 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.35 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.29 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.26 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.18 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.06 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.06 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.95 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.9 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.82 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.55 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.46 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.15 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.09 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.07 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 97.05 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.94 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.92 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.9 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.76 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.71 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.65 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.62 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.6 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 96.45 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.39 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.39 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.38 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.32 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.1 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.99 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.25 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.16 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 94.15 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 93.81 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 92.94 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 92.44 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 91.8 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 91.59 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 90.76 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 90.14 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 89.77 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 87.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 87.23 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 85.27 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 85.12 | |
| PF09372 | 97 | PRANC: PRANC domain; InterPro: IPR018272 This pres | 83.12 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=252.48 Aligned_cols=382 Identities=23% Similarity=0.400 Sum_probs=261.7
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccchhhHHHHhccCCCccEEecCCCC-CCChhhHH
Q 012001 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCP-RANDDALS 90 (473)
Q Consensus 12 ~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~-~~~~~~~~ 90 (473)
--.||+|++..||+ ++. .+.+++++++|+.|+-.+... .+.++.++.... .+....+.
T Consensus 72 ~~~LPpEl~lkvFS-~LD-tksl~r~a~~c~~~n~~AlD~-------------------~~~q~idL~t~~rDv~g~VV~ 130 (483)
T KOG4341|consen 72 SRSLPPELLLKVFS-MLD-TKSLCRAAQCCTMWNKLALDG-------------------SCWQHIDLFTFQRDVDGGVVE 130 (483)
T ss_pred cccCCHHHHHHHHH-HHh-HHHHHHHHHHHHHhhhhhhcc-------------------ccceeeehhcchhcCCCccee
Confidence 34699999999999 995 999999999999999765432 122333433221 11222333
Q ss_pred hhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHc-CCCCCEEecccCcccCHHHHH
Q 012001 91 IVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIG 169 (473)
Q Consensus 91 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~ 169 (473)
.+ .......|+.|.+.+++......+..+...||++++|.+.+|..+++.....+++ |++|++|++..|..+++..++
T Consensus 131 ~~-~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 131 NM-ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred hH-hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 33 3455567778888777777777777777777777777777777777666555553 666777777766666666666
Q ss_pred HHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHh
Q 012001 170 RIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEY 249 (473)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 249 (473)
.+.+.|++|+++++++|+.+.+.++..+.+++. .++.+...||.......+.....
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~------------------------~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK------------------------ELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccch------------------------hhhhhhhcccccccHHHHHHHhc
Confidence 666666666666666666555555554444444 34444445566666666666665
Q ss_pred cCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCC
Q 012001 250 SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (473)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (473)
.++-+..+++..|..+++.++..+..++..|+.|..+++.. +++..+..++..+++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~------------------------~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD------------------------ITDEVLWALGQHCHN 321 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC------------------------CchHHHHHHhcCCCc
Confidence 56667777777776677766666666666666666655533 344555566666777
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHh---cCc
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQ 406 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~ 406 (473)
|+.|.++.|..+++.++..+-.+++.|+.+++..|..+++..+..++.+|+.|+.+.+++|..++++++..+.. .+.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 77777777777777777777777777777777777767776677777777888888888777777777766643 455
Q ss_pred cCCeeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 407 YLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 407 ~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
.|+.+.+.++ .+++..+..+..|++|+.+++.+|..++..++..+..++|++++...
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 6777788876 67777777777888888888888888888888888888888776543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=210.49 Aligned_cols=298 Identities=26% Similarity=0.445 Sum_probs=232.1
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
.|++|.+.++..+.+..+..+...||++++|.+.+|..+++.....+.+.|++|+ +
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~------------------------~ 194 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR------------------------H 194 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh------------------------h
Confidence 4555555555555555555555555555555555555555555555555555444 4
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhh-CCCCCCeeE
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH-NFPMLQSIK 309 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~ 309 (473)
+.+..|..+++..+..++.+|++|+++++++|+.+...++..+.+++..++.+...+|.....+...... .++-+..++
T Consensus 195 l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 195 LNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred hhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 4455566667777777777777777777777777777777777777777777766677655544443333 445566666
Q ss_pred ecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012001 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (473)
Q Consensus 310 l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (473)
+..|. +++..+..+...+..|+.|..++|..+++..+..+.+++++|+.+.+..|..+++..+..+..+++.|+.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 66664 78888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhc----CCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 389 CCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISR----CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
.|..+++..+..+..+|+.|+.+.++.| .++|.++..+.. ...|+.+.+++|+.+++..+..+. .|++|+.+++
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l 433 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIEL 433 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeee
Confidence 9999999989999999999999999998 899998777763 578999999999888887776666 8999999999
Q ss_pred CCCCCcccCC
Q 012001 464 YRFVTFHLSA 473 (473)
Q Consensus 464 ~~c~~l~~~~ 473 (473)
.+|.+++++|
T Consensus 434 ~~~q~vtk~~ 443 (483)
T KOG4341|consen 434 IDCQDVTKEA 443 (483)
T ss_pred echhhhhhhh
Confidence 9999998765
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=189.43 Aligned_cols=271 Identities=23% Similarity=0.342 Sum_probs=167.7
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh--hhccc----ccchhhHHHHhccCCCccEEecCCCCCC
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH--RKILK----PLCAETLSRTSARYPFITQLDLSLCPRA 84 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~l~~L~l~~~~~~ 84 (473)
.|++|||||+..||+ .|+ .+++.+++.|||||+++.... |.... .++++.+.++.++- +..+.+.... .
T Consensus 97 ~~~slpDEill~IFs-~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg--V~v~Rlar~~-~ 171 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFS-CLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG--VIVFRLARSF-M 171 (419)
T ss_pred CcccCCHHHHHHHHH-hcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC--eEEEEcchhh-h
Confidence 489999999999999 999 999999999999999986543 22211 12233444444332 2223322211 1
Q ss_pred ChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccC
Q 012001 85 NDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLIT 164 (473)
Q Consensus 85 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 164 (473)
.+..+... ....-..|++++++.. .++...+..+..+|.+|+.|.+.|. .++|.....+++..+|+.|++++|.+++
T Consensus 172 ~~prlae~-~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 172 DQPRLAEH-FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred cCchhhhh-hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccc
Confidence 12212222 2344456888888764 3677777777778888888888877 5777666777777888888888877777
Q ss_pred HHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHH
Q 012001 165 DLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGL 244 (473)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 244 (473)
..++.-+..+|..|..|++++|...++..-..+..-.++|+.|+++++. .++....+
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r-----------------------rnl~~sh~ 305 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR-----------------------RNLQKSHL 305 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH-----------------------hhhhhhHH
Confidence 7777777777777777777776554444222222222444444444431 12333345
Q ss_pred HHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCC
Q 012001 245 ASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC 313 (473)
Q Consensus 245 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 313 (473)
..+.+.||+|.+|+++++..+++ +....+.+++.|++|.++.|..+.....-.+...|.|.+|++.||
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 55666677777777777766665 333444556777777777776555544444445555555555543
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-25 Score=226.54 Aligned_cols=378 Identities=17% Similarity=0.134 Sum_probs=202.1
Q ss_pred HHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH
Q 012001 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (473)
Q Consensus 63 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 142 (473)
++..+..+++|+.|+++++.. .......+ ...+.+|++|+++++....... ...+++|++|+++++. +....
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~-~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~-~~~~~ 156 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQL-SGPIPDDI--FTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNM-LSGEI 156 (968)
T ss_pred CChHHhCCCCCCEEECCCCcc-CCcCChHH--hccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCc-ccccC
Confidence 344566777888888876532 11111111 2345777788777654211111 0246777777777763 33333
Q ss_pred HHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCccccc
Q 012001 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (473)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (473)
...+..+++|++|+++++.... .....+. .+++|++|+++++......+ .....+++|+.|++++|.+.+.....+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~-~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVG-KIPNSLT-NLTSLEFLTLASNQLVGQIP--RELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred ChHHhcCCCCCEEECccCcccc-cCChhhh-hCcCCCeeeccCCCCcCcCC--hHHcCcCCccEEECcCCccCCcCChhH
Confidence 3556777888888887764221 1112222 27778888877764322111 122366777777777777766666667
Q ss_pred ccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCC
Q 012001 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNF 302 (473)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 302 (473)
.++++|++|++++|. +.......+.. +++|+.|+++++..... +...+..+++|++|+++++. +....+..+.++
T Consensus 233 ~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l 307 (968)
T PLN00113 233 GGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNS-LSGEIPELVIQL 307 (968)
T ss_pred hcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCe-eccCCChhHcCC
Confidence 777777777777743 33222333444 67777777776653221 12223456777777777663 334455566677
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
++|+.|++.+|.+....+..+. .+++|+.|++.+| .+... ++..+..+++|+.|+++++. ++...... ...+++|
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~l~~~~~L~~L~Ls~n~-l~~~~p~~-~~~~~~L 382 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSN-KFSGE-IPKNLGKHNNLTVLDLSTNN-LTGEIPEG-LCSSGNL 382 (968)
T ss_pred CCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCC-CCcCc-CChHHhCCCCCcEEECCCCe-eEeeCChh-HhCcCCC
Confidence 7777777777766655544444 5677777777764 33221 33344556677777776654 22111111 1234555
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeee
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 462 (473)
+.|+++++. +.......+. .+++|+.|++++|.++...+..+..+++|+.|++++| .++.. ++.....+++|+.|+
T Consensus 383 ~~L~l~~n~-l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 383 FKLILFSNS-LEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGR-INSRKWDMPSLQMLS 458 (968)
T ss_pred CEEECcCCE-ecccCCHHHh-CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-cccCc-cChhhccCCCCcEEE
Confidence 555555533 2222112222 4555555555555555444444445555555555555 44321 112222444555555
Q ss_pred cCCC
Q 012001 463 LYRF 466 (473)
Q Consensus 463 l~~c 466 (473)
+++|
T Consensus 459 L~~n 462 (968)
T PLN00113 459 LARN 462 (968)
T ss_pred CcCc
Confidence 5444
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=226.10 Aligned_cols=382 Identities=17% Similarity=0.122 Sum_probs=178.9
Q ss_pred HHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH
Q 012001 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (473)
Q Consensus 63 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 142 (473)
++..+..+++|+.|+++++.... .... ....+++|++|+++++.. .......+ ..+++|+.|+++++. +....
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~-~~p~---~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~ 228 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVG-KIPN---SLTNLTSLEFLTLASNQL-VGQIPREL-GQMKSLKWIYLGYNN-LSGEI 228 (968)
T ss_pred CChHHhcCCCCCEEECccCcccc-cCCh---hhhhCcCCCeeeccCCCC-cCcCChHH-cCcCCccEEECcCCc-cCCcC
Confidence 45566778888888888764211 1111 123456777777766542 21111222 256667777766653 33222
Q ss_pred HHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCccccc
Q 012001 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (473)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (473)
...+.++++|++|++.++.. .......+ ..+++|+.|++.++......+ .....+++|+.|++++|.+.......+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNL-TGPIPSSL-GNLKNLQYLFLYQNKLSGPIP--PSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred ChhHhcCCCCCEEECcCcee-ccccChhH-hCCCCCCEEECcCCeeeccCc--hhHhhccCcCEEECcCCeeccCCChhH
Confidence 34556666666666666532 11111112 225566666665543211111 111244555555555555444444444
Q ss_pred ccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccc-------------
Q 012001 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF------------- 289 (473)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 289 (473)
.++++|+.|++.++. +.......+.. +++|+.|+++++..... +...+..+++|+.|+++++.
T Consensus 305 ~~l~~L~~L~l~~n~-~~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 305 IQLQNLEILHLFSNN-FTGKIPVALTS-LPRLQVLQLWSNKFSGE--IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred cCCCCCcEEECCCCc-cCCcCChhHhc-CCCCCEEECcCCCCcCc--CChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 445555555555432 22111222222 44555555544432111 11112233344444443331
Q ss_pred ----------cCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC-----
Q 012001 290 ----------WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK----- 354 (473)
Q Consensus 290 ----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----- 354 (473)
.+....+..+..+++|+.|++.+|.+....+..+. .+++|+.|+++++ .++.. +...+..++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L 457 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNN-NLQGR-INSRKWDMPSLQML 457 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCC-cccCc-cChhhccCCCCcEE
Confidence 11122333344455555555555544433333332 3444444444442 22211 111112233
Q ss_pred ------------------CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 355 ------------------ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 355 ------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
+|+.|++++|. ++.... .....+++|+.|++++|. +.......+. .+++|+.|++++|
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N 533 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAVP-RKLGSLSELMQLKLSENK-LSGEIPDELS-SCKKLVSLDLSHN 533 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCc-cCCccC-hhhhhhhccCEEECcCCc-ceeeCChHHc-CccCCCEEECCCC
Confidence 44444444443 221111 112345666666666643 3222222222 5677777777777
Q ss_pred ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
.++...+..+..+++|+.|++++| +++. .++.....+++|+++++++|+-
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQN-QLSG-EIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cccccCChhHhCcccCCEEECCCC-cccc-cCChhHhcCcccCEEeccCCcc
Confidence 777666666667777777777777 5553 2344444677777777777763
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=187.57 Aligned_cols=349 Identities=19% Similarity=0.167 Sum_probs=176.9
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHc-CCCCCEEecccCcccCHHHHHHHHhc
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAAC 174 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (473)
...+..+.|+++++. +....+..+. .+|+|+++++..+ .++.++ .++. ..+|+.|+|..+. ++...-+.+..
T Consensus 75 ~lp~~t~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N-~Lt~IP--~f~~~sghl~~L~L~~N~-I~sv~se~L~~- 147 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKN-ELTRIP--RFGHESGHLEKLDLRHNL-ISSVTSEELSA- 147 (873)
T ss_pred cCccceeeeeccccc-cccCcHHHHh-cCCcceeeeeccc-hhhhcc--cccccccceeEEeeeccc-cccccHHHHHh-
Confidence 344556677777654 3333333333 6777777777766 344432 2332 4457777777653 33332233322
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.|.|++|+++.+ .+.......+. .-+++++|++++|.+++-....+..+.+|-.|.++. +.++..+...+.+ +|+|
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~-L~~L 223 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKR-LPKL 223 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhh-cchh
Confidence 667777777664 23332222111 235677777777777766666677777777777776 4555555544544 7777
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEe
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (473)
+.|++..+..-...+ ..+.++++|+.|.+..+. +..---..+..+.++++|++..|.+..-.-..+. .+..|+.|+
T Consensus 224 ~~LdLnrN~irive~--ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~ 299 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLD 299 (873)
T ss_pred hhhhccccceeeehh--hhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhc
Confidence 777776554211111 124556677777665442 2211123344556666666666654433322232 455666666
Q ss_pred cCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeec
Q 012001 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (473)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (473)
++. +.+..... ..+..+++|+.|+++++. ++...-..+ ..+..|+.|.++. +.++...-..+. .+.+|++|++.
T Consensus 300 lS~-NaI~rih~-d~WsftqkL~~LdLs~N~-i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~af~-~lssL~~LdLr 373 (873)
T KOG4194|consen 300 LSY-NAIQRIHI-DSWSFTQKLKELDLSSNR-ITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEGAFV-GLSSLHKLDLR 373 (873)
T ss_pred cch-hhhheeec-chhhhcccceeEeccccc-cccCChhHH-HHHHHhhhhcccc-cchHHHHhhHHH-HhhhhhhhcCc
Confidence 655 33322111 112345666666666543 333322222 1245555555555 223322211222 45556666665
Q ss_pred ccccCh---hhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 415 ENEVND---EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 415 ~~~~~~---~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+|.++- ++...+..+++|+.|.+.+| ++....-.++. ++++|++|++.+++
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfs-gl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS-GLEALEHLDLGDNA 427 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhc-cCcccceecCCCCc
Confidence 553321 12223334556666666666 55543333333 55666666655554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-24 Score=188.93 Aligned_cols=363 Identities=21% Similarity=0.219 Sum_probs=228.7
Q ss_pred CccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCC
Q 012001 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKN 151 (473)
Q Consensus 72 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 151 (473)
..+.|++++.. +.+..+..+ ...++|+.+++.++. -..++.+.....+|+.|+|.++ .+.......++.++.
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f---~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFF---YNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccccc-cccCcHHHH---hcCCcceeeeeccch---hhhcccccccccceeEEeeecc-ccccccHHHHHhHhh
Confidence 35677877653 344344333 667888888887653 2334555545667888888877 466655577777888
Q ss_pred CCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCee
Q 012001 152 LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDL 231 (473)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 231 (473)
|++|+|+.+. +.......+.. -.++++|++.++ .+++.....+. .+.+|..|.++.|+++.-....+.++++|+.|
T Consensus 151 lrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 151 LRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhch-hhcccCCCCCC-CCCceEEeeccc-ccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 8888888753 44333333222 467888888875 45555544443 45688888888888876666667778888888
Q ss_pred eccCCCCCChHHHHHHHhcCCCCcEEecCCCCc--cchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 232 VLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
++.. +.+.......+.. +++|+.|.+..+.. +++.. +-.+.++++|++..+ .+...-..++.++..|+.|+
T Consensus 227 dLnr-N~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 227 DLNR-NRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hccc-cceeeehhhhhcC-chhhhhhhhhhcCcccccCcc----eeeecccceeecccc-hhhhhhcccccccchhhhhc
Confidence 8876 4454443333443 77788887776542 22222 344677888888765 23333345566778888888
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (473)
++.|.+.......+. .+++|+.|+++. +.++... +..+..+..|+.|.++.+. ++...-.++ ..+.+|++|+++.
T Consensus 300 lS~NaI~rih~d~Ws-ftqkL~~LdLs~-N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af-~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWS-FTQKLKELDLSS-NRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAF-VGLSSLHKLDLRS 374 (873)
T ss_pred cchhhhheeecchhh-hcccceeEeccc-cccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHH-HHhhhhhhhcCcC
Confidence 888877666555555 678888888877 4444321 2224455678888887764 443322222 3467888888876
Q ss_pred CCCCCH---HHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 390 CKLVSW---EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 390 ~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
+. ++. ++...+. +++.|+.|++.+|++....-.++..+++|++|++.+| .+......+|. .+ .|++|.+
T Consensus 375 N~-ls~~IEDaa~~f~-gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe-~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 375 NE-LSWCIEDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFE-PM-ELKELVM 446 (873)
T ss_pred Ce-EEEEEecchhhhc-cchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccc-cc-hhhhhhh
Confidence 32 321 2223333 6888888888888887777777778888888888888 66554444444 33 5555543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=148.71 Aligned_cols=284 Identities=19% Similarity=0.179 Sum_probs=162.4
Q ss_pred EecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHH---HHHHhhCCCCcEEeeccccCCC--CcccccccCcccC
Q 012001 155 LWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQEIRTLDLSYLPITE--KCLPPVVKLQYLE 229 (473)
Q Consensus 155 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~ 229 (473)
|+|.++ .+.......+...+++|+.|++.++. +++.+. .......+.+++++++++.+.. ..+.
T Consensus 3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~--------- 71 (319)
T cd00116 3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQ--------- 71 (319)
T ss_pred cccccC-cccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHH---------
Confidence 444432 23333334444446667777777753 433332 2233345566677666654431 1100
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccc--hHHHHHHHhcCcccceeeccccccCch---hHHHhhhCC-C
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSA---DLSKCLHNF-P 303 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~-~ 303 (473)
.....+.. +++|+.|+++++.... ...+..+... ++|++|+++++..... .+...+..+ +
T Consensus 72 ------------~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 72 ------------SLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred ------------HHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 01112222 4566666665554321 1122222222 4466666665532211 122334455 7
Q ss_pred CCCeeEecCCcCChhHHHHHH---hhCCCCCeEecCCCCCCChHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHH--
Q 012001 304 MLQSIKFEDCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVV---QSHKELRKLDITCCRKITYASINSI-- 375 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~-- 375 (473)
+|+.|++++|.++......+. ..+++|++|++++| .+++.++..+. ..+++|++|++++|. +++.....+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 215 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE 215 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH
Confidence 778888888877754433332 24567888888874 56655544433 344588888888775 655544333
Q ss_pred -HhcCCCCCEEEccCCCCCCHHHHHHHHhcC----ccCCeeeecccccChhhhhhh----hcCCCCCeeecCCCCCcchH
Q 012001 376 -TKTCTSLTSLRMECCKLVSWEAFVLIGQQC----QYLEELDITENEVNDEGLKSI----SRCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 376 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~ 446 (473)
...+++|+.|++++|. +++.++..+...+ +.|++|++++|.+++.+...+ ..+++|+.+++++| .+++.
T Consensus 216 ~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 216 TLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred HhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 3457788888888864 6776666665443 689999999888886655443 34678999999998 88877
Q ss_pred HHHHHHh---cC-ccCCeeecCCCC
Q 012001 447 GLKHVGS---TC-SMLKELDLYRFV 467 (473)
Q Consensus 447 ~~~~~~~---~~-~~L~~L~l~~c~ 467 (473)
+...+.+ .. +.|++++|.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCC
Confidence 6554443 33 588888887764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-20 Score=169.35 Aligned_cols=372 Identities=18% Similarity=0.181 Sum_probs=246.4
Q ss_pred CCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC
Q 012001 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (473)
Q Consensus 70 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (473)
.|.++-+++++...-.+.....+ ..+..++-|.+.... -..++.-...+.+|++|.+.++. +.... ..+..+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v---~qMt~~~WLkLnrt~---L~~vPeEL~~lqkLEHLs~~HN~-L~~vh-GELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV---EQMTQMTWLKLNRTK---LEQVPEELSRLQKLEHLSMAHNQ-LISVH-GELSDL 77 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH---HHhhheeEEEechhh---hhhChHHHHHHhhhhhhhhhhhh-hHhhh-hhhccc
Confidence 45677777777643333333333 455777777775532 23333434478889999888773 43332 567778
Q ss_pred CCCCEEecccCcccCHHHHHH-HHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCccc
Q 012001 150 KNLERLWLARCKLITDLGIGR-IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL 228 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 228 (473)
|.|+.+.+..+. +...++.. +.. +..|+.|+++.+. +...+ .-.+..+++-.|++++|++....-+-+.++.-|
T Consensus 78 p~LRsv~~R~N~-LKnsGiP~diF~-l~dLt~lDLShNq-L~EvP--~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 78 PRLRSVIVRDNN-LKNSGIPTDIFR-LKDLTILDLSHNQ-LREVP--TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hhhHHHhhhccc-cccCCCCchhcc-cccceeeecchhh-hhhcc--hhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 888888877643 33333322 222 7788888888753 32222 223356788899999988764444445577788
Q ss_pred CeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCee
Q 012001 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308 (473)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 308 (473)
-.|+++. +.+...+ ..+.. +..|++|.+++++. .-..+.. +..+.+|+.|++++.......++..+..+.+|+.+
T Consensus 153 LfLDLS~-NrLe~LP-PQ~RR-L~~LqtL~Ls~NPL-~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 153 LFLDLSN-NRLEMLP-PQIRR-LSMLQTLKLSNNPL-NHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhhcccc-chhhhcC-HHHHH-HhhhhhhhcCCChh-hHHHHhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 8888887 3343322 23444 77899999998773 2222222 22345667777777655555677778888999999
Q ss_pred EecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012001 309 KFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (473)
Q Consensus 309 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (473)
+++.|++.. .+..+. .+++|+.|++++ +.++... .....-.+|++|+++.+. ++ .++...-.+++|++|.+.
T Consensus 228 DlS~N~Lp~-vPecly-~l~~LrrLNLS~-N~iteL~--~~~~~W~~lEtLNlSrNQ-Lt--~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 228 DLSENNLPI-VPECLY-KLRNLRRLNLSG-NKITELN--MTEGEWENLETLNLSRNQ-LT--VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred cccccCCCc-chHHHh-hhhhhheeccCc-Cceeeee--ccHHHHhhhhhhccccch-hc--cchHHHhhhHHHHHHHhc
Confidence 999987642 333333 678999999998 6666422 222233588999998765 44 233333468899999887
Q ss_pred CCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+ +.++-++++.-...+.+|+.++..+|.+.- .+..+++|++|+.|.++.|.-+| ++.-+.-++-|+.|++.++|+
T Consensus 300 ~-NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 300 N-NKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred c-CcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcC
Confidence 7 557777766555577889999998876643 34778899999999999995555 666666789999999999999
Q ss_pred cccC
Q 012001 469 FHLS 472 (473)
Q Consensus 469 l~~~ 472 (473)
+.+.
T Consensus 375 LVMP 378 (1255)
T KOG0444|consen 375 LVMP 378 (1255)
T ss_pred ccCC
Confidence 8754
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=142.90 Aligned_cols=283 Identities=22% Similarity=0.236 Sum_probs=166.6
Q ss_pred EEEcCCCCccc-HHHHHHHHcCCCCCEEecccCcccCHHHHHH---HHhcCCcCceeecccCCCCC-HHHH---HHHHhh
Q 012001 129 EIDLSNGTEMG-DAAAAAIAEAKNLERLWLARCKLITDLGIGR---IAACCRKLKLLCLKWCIRVT-DLGV---ELVALK 200 (473)
Q Consensus 129 ~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~ 200 (473)
.|+|..+ .+. ......+..+.+|++|++.++. +++.+... .....++++++++.++.... ...+ ......
T Consensus 2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccC-cccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 4556554 333 3333455667889999999975 55544333 34457789999998754321 2222 223335
Q ss_pred CCCCcEEeeccccCCCCcccccccC---cccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcC
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKL---QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA 277 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (473)
+++|+.|+++++.+.......+..+ ++|++|++++|. +.+.+...+.. .+..+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-----------------------~l~~~ 135 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-----------------------GLKDL 135 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-----------------------HHHhC
Confidence 6788888888876654333333222 235555555532 33222221111 11222
Q ss_pred -cccceeeccccccCc---hhHHHhhhCCCCCCeeEecCCcCChhHHHHHHh---hCCCCCeEecCCCCCCChHHHH---
Q 012001 278 -DYLQQLILAYSFWVS---ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELS--- 347 (473)
Q Consensus 278 -~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~--- 347 (473)
++|+.|+++++.... ..+...+..+++|+.|++.+|.+.+.....+.. ..++|++|++++| .+++.+..
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 444555554443221 122334455667777777777777655554443 3357888888874 45544433
Q ss_pred HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC----CCCCEEEccCCCCCCHHHHHHH---HhcCccCCeeeecccccCh
Q 012001 348 FVVQSHKELRKLDITCCRKITYASINSITKTC----TSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVND 420 (473)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 420 (473)
..+..+++|++|++++|. +++..+..++..+ +.|++|++++|. +++.+...+ ...+++|+.+++++|.+++
T Consensus 215 ~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 215 ETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 334456788888888875 7776666665543 788999998865 654444333 2355789999999999998
Q ss_pred hhhhhhh----cC-CCCCeeecCCC
Q 012001 421 EGLKSIS----RC-SKLSSLKLGIC 440 (473)
Q Consensus 421 ~~~~~l~----~~-~~L~~L~l~~~ 440 (473)
.+...++ .. +.|+++++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCC
Confidence 8766555 23 68888888876
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-18 Score=139.79 Aligned_cols=234 Identities=21% Similarity=0.333 Sum_probs=174.6
Q ss_pred CeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHh-cCcccceeeccccccCchhHHHhhhCCCCCCe
Q 012001 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK-GADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307 (473)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 307 (473)
+.+++.+ ..+....+..+.. .....+.+.... ..+..+.+.+. .-..|++|+++....-...+...+..|.+|+.
T Consensus 139 ~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 3455555 4455555555553 445555554322 22222322222 23468888888775444566677888999999
Q ss_pred eEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEc
Q 012001 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM 387 (473)
Q Consensus 308 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 387 (473)
|.+.|..+.|.....++ .-.+|+.|+++.|++++..++..++.+|..|..|+++.|...++.-...+.+--++|+.|++
T Consensus 215 lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl 293 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL 293 (419)
T ss_pred ccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence 99999999998888888 55889999999999999999999999999999999999986666644444445689999999
Q ss_pred cCCCC-CCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 388 ECCKL-VSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 388 ~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
+||.. +.+..+..+...||+|.+||+++| .+++.....+.+++.|++|.++.|..+....+..+. ..|+|.+|++.|
T Consensus 294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g 372 (419)
T KOG2120|consen 294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFG 372 (419)
T ss_pred hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeec-cCcceEEEEecc
Confidence 98754 355667778889999999999996 788877777888999999999999888776665555 789999999998
Q ss_pred CCC
Q 012001 466 FVT 468 (473)
Q Consensus 466 c~~ 468 (473)
|-.
T Consensus 373 ~vs 375 (419)
T KOG2120|consen 373 CVS 375 (419)
T ss_pred ccC
Confidence 854
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=173.55 Aligned_cols=269 Identities=19% Similarity=0.218 Sum_probs=149.6
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
+++|+.|+++++..+...+- ...+++|+.|++.+|......+..+.++++|+.|++++|..+...+.. + .+++|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i--~l~sL 706 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I--NLKSL 706 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C--CCCCC
Confidence 55666666655433322221 124566666666665333334444555666666666665544432211 1 25566
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCCh------hHHHHHHhhCC
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR------SGIKAIGNWHG 328 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~l~~~~~ 328 (473)
+.|++++|..... +....++|+.|+++++. +. .++.. ..+++|+.|.+.++.... .........++
T Consensus 707 ~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~-~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 707 YRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IE-EFPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CEEeCCCCCCccc-----cccccCCcCeeecCCCc-cc-ccccc-ccccccccccccccchhhccccccccchhhhhccc
Confidence 6666666543221 11123456666665543 11 12211 134566666665432100 00001111346
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
+|+.|++++|..+.. ++..+..+++|+.|++++|..++... ... .+++|+.|++++|..+... ....++|
T Consensus 779 sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~~-----p~~~~nL 848 (1153)
T PLN03210 779 SLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLP--TGI-NLESLESLDLSGCSRLRTF-----PDISTNI 848 (1153)
T ss_pred cchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeC--CCC-CccccCEEECCCCCccccc-----ccccccc
Confidence 788888887654432 44456677888888888877665322 111 4678888888888765321 1123678
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
+.|++++|.++... ..+..+++|+.|++++|.+++. ++.....+++|+.+++++|.+++
T Consensus 849 ~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 849 SDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 88888888776543 4566788888888888877774 33334467888888888888775
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=170.17 Aligned_cols=371 Identities=16% Similarity=0.174 Sum_probs=224.3
Q ss_pred HHhccCCCccEEecCCCCC--CCh---hhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCccc
Q 012001 65 RTSARYPFITQLDLSLCPR--AND---DALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMG 139 (473)
Q Consensus 65 ~~~~~~~~l~~L~l~~~~~--~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 139 (473)
..+..+++|+.|.+..... ... .....+ .....+|+.|.+.++.. ..++..+ ...+|++|++.++ .+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~lp~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s-~l~ 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYLPPKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGS-KLE 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcch--hhcCcccEEEEecCCCC---CCCCCcC-CccCCcEEECcCc-ccc
Confidence 3466677788887754310 000 000111 12235688888766431 1122222 4678999999887 344
Q ss_pred HHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcc
Q 012001 140 DAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCL 219 (473)
Q Consensus 140 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 219 (473)
.. +..+..+++|+.|++.++..+...+ .+. .+++|+.|++.+|..+...+. ....+++|+.|++++|..-.. +
T Consensus 625 ~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls-~l~~Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~-L 697 (1153)
T PLN03210 625 KL-WDGVHSLTGLRNIDLRGSKNLKEIP--DLS-MATNLETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEI-L 697 (1153)
T ss_pred cc-ccccccCCCCCEEECCCCCCcCcCC--ccc-cCCcccEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCc-c
Confidence 43 2445678999999998865444322 222 378999999998876654432 234788999999998733222 2
Q ss_pred cccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccC------ch
Q 012001 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV------SA 293 (473)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~ 293 (473)
+...++++|+.|++++|..+.. +....++|+.|++.++. +.. ++.. ..+++|++|.+.++... ..
T Consensus 698 p~~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~~--lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 698 PTGINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IEE--FPSN-LRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCcCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-ccc--cccc-ccccccccccccccchhhccccccc
Confidence 2222688999999999865443 22225688899888765 221 1111 13577787777653210 00
Q ss_pred hHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHH
Q 012001 294 DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN 373 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (473)
..+.....+++|+.|++++|......+..+. .+++|+.|++.+|..+.. ++... .+++|++|++++|..+...
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~--- 841 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTF--- 841 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccccc---
Confidence 0111122356899999998875555555555 788999999998876553 22222 4688999999988765432
Q ss_pred HHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHH--
Q 012001 374 SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-- 450 (473)
Q Consensus 374 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-- 450 (473)
....++|+.|+++++ .++. ++.....+++|+.|++.+| .+... ...+..+++|+.+++++|..++...+..
T Consensus 842 --p~~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~ 915 (1153)
T PLN03210 842 --PDISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCGALTEASWNGSP 915 (1153)
T ss_pred --cccccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCcccccccCCCCc
Confidence 123468889998874 3542 2222337889999999886 55543 2345578888889999987776432211
Q ss_pred ---------HHhcCccCCeeecCCCCCccc
Q 012001 451 ---------VGSTCSMLKELDLYRFVTFHL 471 (473)
Q Consensus 451 ---------~~~~~~~L~~L~l~~c~~l~~ 471 (473)
....+|....+.+.+|.++..
T Consensus 916 ~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 916 SEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred hhhhhhcccccccCCchhccccccccCCCc
Confidence 011344445567777777654
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-18 Score=156.24 Aligned_cols=346 Identities=16% Similarity=0.151 Sum_probs=238.2
Q ss_pred CCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCc
Q 012001 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (473)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (473)
++-++-.+++++. ++...++.-...+..++-|.|... .+...+ ..++++.+|++|.+..+..++.. ..+. .+|.
T Consensus 6 LpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt-~L~~vP-eEL~~lqkLEHLs~~HN~L~~vh--GELs-~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRT-KLEQVP-EELSRLQKLEHLSMAHNQLISVH--GELS-DLPR 79 (1255)
T ss_pred cceeecccccCCc-CCCCcCchhHHHhhheeEEEechh-hhhhCh-HHHHHHhhhhhhhhhhhhhHhhh--hhhc-cchh
Confidence 4556667777765 444445555558899999999876 455554 67899999999999886533221 2222 3889
Q ss_pred CceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEE
Q 012001 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKAL 257 (473)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (473)
|+.+.+..+. +...++..=+-.+..|+.|+++.|++. +.+..+...+++-.|++++ +++...+-..+.+ +.-|-.|
T Consensus 80 LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfin-LtDLLfL 155 (1255)
T KOG0444|consen 80 LRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY-NNIETIPNSLFIN-LTDLLFL 155 (1255)
T ss_pred hHHHhhhccc-cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc-CccccCCchHHHh-hHhHhhh
Confidence 9999888753 333333222237889999999999876 5777788888999999998 4555444333444 7778888
Q ss_pred ecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChh-HHHHHHhhCCCCCeEecC
Q 012001 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARS-GIKAIGNWHGSLKELSLS 336 (473)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~ 336 (473)
+++.+.. ..++.-...+..|++|.+++++.. ..-...+..+.+|+.|.+++..-+-. .+..+ ..+.||+.++++
T Consensus 156 DLS~NrL---e~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS 230 (1255)
T KOG0444|consen 156 DLSNNRL---EMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLS 230 (1255)
T ss_pred ccccchh---hhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhcccc
Confidence 9987652 223334556788999999988532 22333444566777888887653322 22222 256789999998
Q ss_pred CCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
. ++++- ++..+-.+++|+.|+++++. ++.... -...+.+|++|+++.+. ++. ++.-...++.|+.|.+.+|
T Consensus 231 ~-N~Lp~--vPecly~l~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrNQ-Lt~--LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 231 E-NNLPI--VPECLYKLRNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRNQ-LTV--LPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred c-cCCCc--chHHHhhhhhhheeccCcCc-eeeeec--cHHHHhhhhhhccccch-hcc--chHHHhhhHHHHHHHhccC
Confidence 7 55553 45556677999999999875 654332 22347899999999843 432 2222237789999999999
Q ss_pred ccChhhhh-hhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 417 EVNDEGLK-SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 417 ~~~~~~~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
.++-+|+. .++++.+|+.+...+| ++. -++.-...|+.|+.|.+..+.-||
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aanN-~LE--lVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAANN-KLE--LVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhcc-ccc--cCchhhhhhHHHHHhcccccceee
Confidence 88877644 4788999999999998 776 355556689999999999888776
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=146.40 Aligned_cols=273 Identities=28% Similarity=0.364 Sum_probs=125.3
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhccccc-----chhhHHHHhccCCCccEEecCCCCCC
Q 012001 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPL-----CAETLSRTSARYPFITQLDLSLCPRA 84 (473)
Q Consensus 10 ~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~l~~L~l~~~~~~ 84 (473)
......|++....++. ..+ ..+......+++.|..........+... ...........+...+.+........
T Consensus 43 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLL-KLV-VLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSKV 120 (482)
T ss_pred eeeeccccchhhhccc-ccc-cccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCccc
Confidence 3566777778777777 665 7777778888888887654432221111 11223333333333333333222211
Q ss_pred ChhhHHhh-hccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCccc-HH-HHHHHHcCCCCCEEecccCc
Q 012001 85 NDDALSIV-SSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMG-DA-AAAAIAEAKNLERLWLARCK 161 (473)
Q Consensus 85 ~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~-~~~~l~~~~~L~~L~l~~~~ 161 (473)
.......+ +........ .................+...+..++.+++..+.... .. .......++.|+.|.+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 199 (482)
T KOG1947|consen 121 STLSLLSIFSLLVKLRNL-LLNLSLRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCS 199 (482)
T ss_pred cccchhhhhhhhhhcchh-hccccccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccc
Confidence 11111111 000111111 1111111111222222233234444444444332211 11 11222235666666666666
Q ss_pred ccCHHHHHHHHhcCCcCceeeccc-CCCCCHHH--HHHHHhhCCCCcEEeecccc-CCCCccccccc-CcccCeeeccCC
Q 012001 162 LITDLGIGRIAACCRKLKLLCLKW-CIRVTDLG--VELVALKCQEIRTLDLSYLP-ITEKCLPPVVK-LQYLEDLVLEGC 236 (473)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~-~~~L~~L~l~~~ 236 (473)
.+.+.++..+...++.|+.|++.+ +..+...+ ...+...|++|+.|++..+. +++..+..++. +++|+.|.+..|
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 666555555555566666666655 22222111 22234455556666665553 55555555443 555555555555
Q ss_pred CCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeec
Q 012001 237 HGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (473)
Q Consensus 237 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (473)
..+++.++..+...++.|++|++++|..+++.++......+++++.|.+
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5455555555555555555555555555545444444444555544443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=140.21 Aligned_cols=235 Identities=31% Similarity=0.481 Sum_probs=124.1
Q ss_pred CcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCC-CccchH--HHHHHHhcCcccceeeccccccCchhHHHhhhC
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHV--GLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (473)
++.|+.+.+.+|..+.+.....+...++.|+.|+++++ ...... ........+++|+.|+++++..+++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666666666555555555667777776652 222211 122234445666666666655444444444443
Q ss_pred -CCCCCeeEecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC---CCCCHHHHHHHH
Q 012001 302 -FPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC---RKITYASINSIT 376 (473)
Q Consensus 302 -~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~ 376 (473)
|++|+.|.+.+|. +++.++..++..+++|++|++++|..+++.++......|++|+.|.+..+ ..+++..+....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 5666666665555 56666666666666666666666666666666666555665555443322 223333222222
Q ss_pred ------------hcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhh-cCCCCCeeecCCCCCc
Q 012001 377 ------------KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS-RCSKLSSLKLGICSNI 443 (473)
Q Consensus 377 ------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l 443 (473)
.++++++.+.+.+|. ..+.+......+||+| + ..+.... .+..++.|.++.|..+
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l----------~-~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL----------T-ESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc----------c-hHHHHHhccCCccceEecccCccc
Confidence 223333333333322 2222222222222222 1 1111111 2223688888888777
Q ss_pred chHHHHHHHhcCccCCeeecCCCCCccc
Q 012001 444 TDEGLKHVGSTCSMLKELDLYRFVTFHL 471 (473)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 471 (473)
++..+......+.++..+++.+|+.++.
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccc
Confidence 7777777665577888888888877764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=113.03 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=142.6
Q ss_pred CCCCcEEecCCCCccc--hHHHHHHHhcCcccceeeccccccCchhHHH-------------hhhCCCCCCeeEecCCcC
Q 012001 251 CKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSADLSK-------------CLHNFPMLQSIKFEDCPV 315 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~l~~~~~L~~L~l~~~~~ 315 (473)
+|+|+.++++++-.-. ..++..++.++.+|++|.+.+|. +....-. ....-++|+.+...+|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 6788888888775322 23566677788888888888874 3332222 223457899999999987
Q ss_pred ChhHHHHH---HhhCCCCCeEecCCCCCCChHHH---HHHHHhCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEE
Q 012001 316 ARSGIKAI---GNWHGSLKELSLSKCSGVTDEEL---SFVVQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLR 386 (473)
Q Consensus 316 ~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~ 386 (473)
.+.+...+ .+..++|+.+.+.. +.+...++ ...+..||+|+.|++..+. ++..+-..++ ..++.|+.|+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeec
Confidence 66554443 44678999999987 56655544 3345678999999998765 5555444443 3578899999
Q ss_pred ccCCCCCCHHHH----HHHHhcCccCCeeeecccccChhhhhhhh----cCCCCCeeecCCCCCc--chHHHHHHHhcCc
Q 012001 387 MECCKLVSWEAF----VLIGQQCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNI--TDEGLKHVGSTCS 456 (473)
Q Consensus 387 l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~ 456 (473)
+++|. +...|. ..+....|.|+.|.+.+|.++..+...+. ..|.|+.|++++| .+ .+.++..+...++
T Consensus 248 l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 248 LGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKFD 325 (382)
T ss_pred ccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhcc
Confidence 99987 544443 34445678999999999998887766544 4689999999999 88 6777877776654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-14 Score=134.60 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCC
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (473)
|+.|++.+ +.++|.-++ .+.++++|+.|+++++. ++..+...+ .+++.|+.|+++| +.++.-. ..++ .|+.|+
T Consensus 361 Lq~Lylan-N~Ltd~c~p-~l~~~~hLKVLhLsyNr-L~~fpas~~-~kle~LeeL~LSG-NkL~~Lp-~tva-~~~~L~ 433 (1081)
T KOG0618|consen 361 LQELYLAN-NHLTDSCFP-VLVNFKHLKVLHLSYNR-LNSFPASKL-RKLEELEELNLSG-NKLTTLP-DTVA-NLGRLH 433 (1081)
T ss_pred HHHHHHhc-Ccccccchh-hhccccceeeeeecccc-cccCCHHHH-hchHHhHHHhccc-chhhhhh-HHHH-hhhhhH
Confidence 33444444 344444332 23355666666666553 222222122 3456666666666 3233222 1112 455555
Q ss_pred eeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 410 ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+|...+|++.... .+++++.|+.++++.| +++...++.-. -.|+|++|+++|++.
T Consensus 434 tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcCCceeech--hhhhcCcceEEecccc-hhhhhhhhhhC-CCcccceeeccCCcc
Confidence 5555555554432 4455566666666665 55554444333 235666666666553
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=107.02 Aligned_cols=193 Identities=18% Similarity=0.246 Sum_probs=140.5
Q ss_pred HHHhcCcccceeeccccccCch---hHHHhhhCCCCCCeeEecCCcCChhHHHHHHh------------hCCCCCeEecC
Q 012001 272 SLIKGADYLQQLILAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN------------WHGSLKELSLS 336 (473)
Q Consensus 272 ~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------------~~~~L~~L~l~ 336 (473)
..+.++|+|++|+++++..-.. .+-..+.++..|++|.+.+|.++..+-..+++ .-+.|+.+..+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3455688999999998753322 33455678899999999999888766555432 35688888887
Q ss_pred CCCCCChH---HHHHHHHhCCCCcEEecCCCCCCCHHHH---HHHHhcCCCCCEEEccCCCCCCHHHHHHHHh---cCcc
Q 012001 337 KCSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASI---NSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQY 407 (473)
Q Consensus 337 ~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~ 407 (473)
. +.+.+. .+...++.+|.|+.+.++.+. +...+. ..-+.+||.|+.|++.. +.++..+-..++. .+++
T Consensus 166 r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 166 R-NRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred c-cccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccch
Confidence 7 444433 355567788999999998765 443333 23345799999999998 4466655555443 5678
Q ss_pred CCeeeecccccChhhhhhhh-----cCCCCCeeecCCCCCcchHHHHHHH---hcCccCCeeecCCCCC
Q 012001 408 LEELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNITDEGLKHVG---STCSMLKELDLYRFVT 468 (473)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~c~~ 468 (473)
|++|++++|.+.+.|..++. ..|+|+.|.+.+| .++..+...+. ...|.|..|++.+|.-
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999999999998877765 3789999999999 88876655433 2578999999999864
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-14 Score=124.10 Aligned_cols=105 Identities=23% Similarity=0.192 Sum_probs=66.4
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+.+|+.|++..+++. .++.|..+..|++++++. +.+.... ....++++++..|++.++. +... +.-+..+.+
T Consensus 204 ~l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~-N~i~~lp-ae~~~~L~~l~vLDLRdNk-lke~--Pde~clLrs 276 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR--FLPEFPGCSLLKELHVGE-NQIEMLP-AEHLKHLNSLLVLDLRDNK-LKEV--PDEICLLRS 276 (565)
T ss_pred chhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcc-cHHHhhH-HHHhcccccceeeeccccc-cccC--chHHHHhhh
Confidence 4556667777777663 455777777888888776 3444333 3344458889999998876 2221 122334677
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP 314 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 314 (473)
|++|+++++.. ...+..++++ .|+.|.+.|++
T Consensus 277 L~rLDlSNN~i--s~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 277 LERLDLSNNDI--SSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhcccCCcc--ccCCcccccc-eeeehhhcCCc
Confidence 88888887632 2445556666 67777777765
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.1e-13 Score=114.64 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=139.4
Q ss_pred cCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCC
Q 012001 224 KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (473)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 303 (473)
++.+|+++.+.++. +...+.......|++++.|+++.+-...-..+..++..+|+|+.|+++.+.......-..-..++
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 57889999998853 44444334555699999999998776556678888889999999999876432211111112567
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (473)
.|+.|.++.|.++...+..+...+|+|+.|++..+..+.-.... .+.+..|+.|+++++..++....... ..+|.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~-~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKV-GTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccc-ccccchh
Confidence 88888888888888777777778888888888874332211111 22345788888888775554433333 4688888
Q ss_pred EEEccCCCCCCHHH-----HHHHHhcCccCCeeeecccccChh-hhhhhhcCCCCCeeecCCC
Q 012001 384 SLRMECCKLVSWEA-----FVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 384 ~L~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 440 (473)
.|+++.|. +++.. ........|+|+.|++..|++.+- .+..+..+++|+.|.+..+
T Consensus 275 ~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 275 QLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 88887754 33221 122233667888888888877553 2233445677777776666
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-13 Score=115.24 Aligned_cols=216 Identities=20% Similarity=0.191 Sum_probs=144.4
Q ss_pred HhhCCCCcEEeeccccCCCCccc-ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhc
Q 012001 198 ALKCQEIRTLDLSYLPITEKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKG 276 (473)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (473)
...+.+|+.+.+.++.+...... ....+++++.|+++.+-...-..+..++..+|+|+.|+++.+......+ ......
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhh
Confidence 34667888889998877655443 3346999999999984333344556777779999999999775322111 111224
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCc-CChh-HHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARS-GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
+++|+.|.++.|.....++...+..+|+|+.|++.+|. +... .... .+..|++|+|++.+.++... ......+|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~-~~~~~~l~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQ-GYKVGTLP 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCccccccc-cccccccc
Confidence 78899999999976666777777889999999999984 2221 1122 34689999999865554332 23445678
Q ss_pred CCcEEecCCCCCCCHHHHHH-----HHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 355 ELRKLDITCCRKITYASINS-----ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
.|+.|+++.+. +.+..... ....+|+|++|++..+.-.....+..+. .+++|+.|.+..|.++.
T Consensus 272 ~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhcccccccc
Confidence 88888887664 44333222 2346899999999885533334455444 67888888887765554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-13 Score=128.50 Aligned_cols=357 Identities=20% Similarity=0.189 Sum_probs=179.2
Q ss_pred CCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC
Q 012001 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (473)
Q Consensus 70 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (473)
.-+|+.|++++... .+... ......+|+.|.++.+. ... .+.-...+.+|+.+.|.++ .+... ...+..+
T Consensus 44 ~v~L~~l~lsnn~~-~~fp~----~it~l~~L~~ln~s~n~--i~~-vp~s~~~~~~l~~lnL~~n-~l~~l-P~~~~~l 113 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQI-SSFPI----QITLLSHLRQLNLSRNY--IRS-VPSSCSNMRNLQYLNLKNN-RLQSL-PASISEL 113 (1081)
T ss_pred eeeeEEeecccccc-ccCCc----hhhhHHHHhhcccchhh--Hhh-Cchhhhhhhcchhheeccc-hhhcC-chhHHhh
Confidence 34488888876532 22111 22345677777776542 111 1222236788888888766 23332 2567777
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHH--------------HHHhhCCCCcE-EeeccccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVE--------------LVALKCQEIRT-LDLSYLPI 214 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~L~~-L~l~~~~~ 214 (473)
.+|+.|+++++.... .+. ....+..++.+..+++..+...+.. .+......++. |++.++.+
T Consensus 114 knl~~LdlS~N~f~~-~Pl--~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~ 190 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGP-IPL--VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEM 190 (1081)
T ss_pred hcccccccchhccCC-Cch--hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchh
Confidence 888888888765322 111 1111333333333332111000000 00000112222 44444433
Q ss_pred CCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchh
Q 012001 215 TEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD 294 (473)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 294 (473)
. ...+..+++|+.+.... +.+. .+...-++|+.|+...+...+.. ....-.+|++++++.+. +. .
T Consensus 191 ~---~~dls~~~~l~~l~c~r-n~ls-----~l~~~g~~l~~L~a~~n~l~~~~----~~p~p~nl~~~dis~n~-l~-~ 255 (1081)
T KOG0618|consen 191 E---VLDLSNLANLEVLHCER-NQLS-----ELEISGPSLTALYADHNPLTTLD----VHPVPLNLQYLDISHNN-LS-N 255 (1081)
T ss_pred h---hhhhhhccchhhhhhhh-cccc-----eEEecCcchheeeeccCcceeec----cccccccceeeecchhh-hh-c
Confidence 2 12222233333333222 1111 11111355556655555432110 01112467777777652 22 3
Q ss_pred HHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHH--
Q 012001 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI-- 372 (473)
Q Consensus 295 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 372 (473)
++.++..+.+|+.+....|.+.. .+..+. ...+|+.|.+..| .+. .++......+.|++|++..+. +.....
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~-lp~ri~-~~~~L~~l~~~~n-el~--yip~~le~~~sL~tLdL~~N~-L~~lp~~~ 329 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVA-LPLRIS-RITSLVSLSAAYN-ELE--YIPPFLEGLKSLRTLDLQSNN-LPSLPDNF 329 (1081)
T ss_pred chHHHHhcccceEecccchhHHh-hHHHHh-hhhhHHHHHhhhh-hhh--hCCCcccccceeeeeeehhcc-ccccchHH
Confidence 44777778888888887777632 222222 3445555555442 221 122223334556666655432 211100
Q ss_pred --------HHHH--------------hcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC
Q 012001 373 --------NSIT--------------KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (473)
Q Consensus 373 --------~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (473)
..+- ...+.|+.|.+.+ +.+++..++.+. +.++||.|++++|.++.-.-..+.+++
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhc-cccceeeeeecccccccCCHHHHhchH
Confidence 0000 1134566666766 457777777776 888999999999988776666777888
Q ss_pred CCCeeecCCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 431 KLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
.|++|+++|| +++. ++.-+..|+.|++|..-+
T Consensus 408 ~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 408 ELEELNLSGN-KLTT--LPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhcC
Confidence 9999999999 8884 455555788888875543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-11 Score=106.38 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=52.6
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
++.+|+|+.|+++++. ++...-.++ .....+++|.+.. +.+.... ..+.+++..|+.|++++|+|+...+.++...
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-e~~a~l~eL~L~~-N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-EGAAELQELYLTR-NKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-cchhhhhhhhcCc-chHHHHH-HHhhhccccceeeeecCCeeEEEeccccccc
Confidence 5566667777776654 444333333 2345666666655 2232211 1233367778888888888887777777777
Q ss_pred CCCCeeecCCCC
Q 012001 430 SKLSSLKLGICS 441 (473)
Q Consensus 430 ~~L~~L~l~~~~ 441 (473)
..|.+|.+-.|+
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 777777776653
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-10 Score=70.49 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=33.1
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 12 ~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
|..||+||+.+||+ |++ .+|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~-~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFS-YLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHT-TS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999 996 999999999999999998543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-11 Score=103.73 Aligned_cols=275 Identities=17% Similarity=0.090 Sum_probs=151.0
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcE
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (473)
.-..+.+..+ .++..+-..+ +.+++|+.|+++.|.++.....++..+++|..|.+.+.+.+++..-..+.. +..|+.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF-~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-L~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAF-KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-LSSLQR 144 (498)
T ss_pred cceEEEeccC-CcccCChhhc-cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-HHHHHH
Confidence 4455666553 3444443333 367888888888888877777778788888888877767777766555555 666666
Q ss_pred EecCCCCccchHHHHHHHhcCcccceeeccccccCchhHH-HhhhCCCCCCeeEecCCcC-ChhHHHHHHh---------
Q 012001 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLS-KCLHNFPMLQSIKFEDCPV-ARSGIKAIGN--------- 325 (473)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~-~~~~~~~l~~--------- 325 (473)
|.+.-+. +.. .....+..+++|..|.+.++.. ..+. ..+..+..++.+.+..+++ .+-.++.+..
T Consensus 145 LllNan~-i~C-ir~~al~dL~~l~lLslyDn~~--q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 145 LLLNANH-INC-IRQDALRDLPSLSLLSLYDNKI--QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HhcChhh-hcc-hhHHHHHHhhhcchhcccchhh--hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 6655433 111 1233455567777777665421 1122 2445556666666665542 1111111110
Q ss_pred -hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE--ec-CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHH
Q 012001 326 -WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL--DI-TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLI 401 (473)
Q Consensus 326 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L--~l-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 401 (473)
.+....-..+.. ..+....-..+. -.++.+ .+ +.|. ........-.+.+|+|++|++++ +.++...-.++
T Consensus 221 sgarc~~p~rl~~-~Ri~q~~a~kf~---c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aF 294 (498)
T KOG4237|consen 221 SGARCVSPYRLYY-KRINQEDARKFL---CSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAF 294 (498)
T ss_pred ccceecchHHHHH-HHhcccchhhhh---hhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCC-Cccchhhhhhh
Confidence 000011111110 000000000000 012222 11 1221 22222233346789999999988 55665444444
Q ss_pred HhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 402 GQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
. ....+++|.+..|.+....-..+..+..|+.|++++| +++-..... .+...+|.+|.+-.+|
T Consensus 295 e-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a-F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 295 E-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGA-FQTLFSLSTLNLLSNP 357 (498)
T ss_pred c-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEeccc-ccccceeeeeehccCc
Confidence 4 6778899999888877666566677888999999999 887543333 3367788888876654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-11 Score=106.37 Aligned_cols=278 Identities=16% Similarity=0.126 Sum_probs=147.2
Q ss_pred HHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhc
Q 012001 171 IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS 250 (473)
Q Consensus 171 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 250 (473)
..+.++++..|+++++ .+...+.+.. .+++|++|+++++.++ .....++++ +|+.|.+.|+. +....-+-+..+
T Consensus 247 ~~~~L~~l~vLDLRdN-klke~Pde~c--lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~g 320 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDN-KLKEVPDEIC--LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP-LRTIRREIISKG 320 (565)
T ss_pred Hhcccccceeeecccc-ccccCchHHH--HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc-hHHHHHHHHccc
Confidence 3345788888999885 4554444433 4578999999998776 355667777 88889888843 222111101000
Q ss_pred ----CCCCcE----EecCCCCccchH------HHHHHHhcCcccceeeccccc--cCchhHHHhhhCCCCCCeeEecCCc
Q 012001 251 ----CKSLKA----LNLSKCQNISHV------GLSSLIKGADYLQQLILAYSF--WVSADLSKCLHNFPMLQSIKFEDCP 314 (473)
Q Consensus 251 ----~~~L~~----L~l~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~ 314 (473)
++.|+. =.++.....+.. ....-.....+.+.|+++.-. .+.++++++. .-.-...++++.+.
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-hhcceEEEecccch
Confidence 011111 011111100000 000001123445666655421 1222333221 22336677777776
Q ss_pred CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 012001 315 VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS 394 (473)
Q Consensus 315 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 394 (473)
+.. .+..+...-.-++.+.++. +.++. .+..+..+++|..|+++++. +.+...+. ..+..|+.|+++... +.
T Consensus 400 L~e-lPk~L~~lkelvT~l~lsn-n~isf--v~~~l~~l~kLt~L~L~NN~-Ln~LP~e~--~~lv~Lq~LnlS~Nr-Fr 471 (565)
T KOG0472|consen 400 LCE-LPKRLVELKELVTDLVLSN-NKISF--VPLELSQLQKLTFLDLSNNL-LNDLPEEM--GSLVRLQTLNLSFNR-FR 471 (565)
T ss_pred Hhh-hhhhhHHHHHHHHHHHhhc-Ccccc--chHHHHhhhcceeeecccch-hhhcchhh--hhhhhhheecccccc-cc
Confidence 432 2222221111222334443 44443 45556677888888888764 44333322 245668888888742 21
Q ss_pred HHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
.++........++.+-.++|++.......+..+.+|..|++.+| .+. .++...++|.+|++|++.|+|-
T Consensus 472 --~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq--~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 472 --MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQ--QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred --cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chh--hCChhhccccceeEEEecCCcc
Confidence 12222212334556666667777776666777888888888887 554 4667777888888888888763
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-10 Score=107.67 Aligned_cols=265 Identities=17% Similarity=0.141 Sum_probs=134.4
Q ss_pred CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC
Q 012001 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (473)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (473)
.+-..|+++++ .++..+ ..+. ++|+.|.+.++. ++. +....++|++|+++++ .++..+. ..++|
T Consensus 201 ~~~~~LdLs~~-~LtsLP-~~l~--~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N-~LtsLP~-----lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLP-DCLP--AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGN-QLTSLPV-----LPPGL 264 (788)
T ss_pred CCCcEEEcCCC-CCCcCC-cchh--cCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCC-ccCcccC-----ccccc
Confidence 34555666655 333322 1121 356666666542 222 1112456666666654 2332211 23466
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.|++.+|.+.. +.. ..++|+.|+++++ .+... ....++|+.|+++++... . +. ....+|+.|.
T Consensus 265 ~~L~Ls~N~L~~--Lp~--lp~~L~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~N~L~-~--Lp---~lp~~L~~L~ 328 (788)
T PRK15387 265 LELSIFSNPLTH--LPA--LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQLA-S--LP---ALPSELCKLW 328 (788)
T ss_pred ceeeccCCchhh--hhh--chhhcCEEECcCC-ccccc-----cccccccceeECCCCccc-c--CC---CCcccccccc
Confidence 666666654431 111 1245666666653 23321 112356677766665421 1 11 1123456666
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++. +. .++. -..+|+.|++++|.+..-. . ..++|+.|.+++ +.++. ++.. .++|+.|+++++
T Consensus 329 Ls~N~-L~-~LP~---lp~~Lq~LdLS~N~Ls~LP--~---lp~~L~~L~Ls~-N~L~~--LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 329 AYNNQ-LT-SLPT---LPSGLQELSVSDNQLASLP--T---LPSELYKLWAYN-NRLTS--LPAL---PSGLKELIVSGN 392 (788)
T ss_pred cccCc-cc-cccc---cccccceEecCCCccCCCC--C---CCcccceehhhc-ccccc--Cccc---ccccceEEecCC
Confidence 65542 11 1111 1136777777777665311 1 235677777766 34442 2221 246788888776
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
. ++. ++ ...++|+.|+++++. ++. ++. ...+|+.|++++|.++.. +..+.++++|+.|++++| .++
T Consensus 393 ~-Lt~--LP---~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 393 R-LTS--LP---VLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred c-ccC--CC---CcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCC
Confidence 4 442 11 123578888888754 432 221 124677888888877743 355667888888888888 777
Q ss_pred hHHHHHH
Q 012001 445 DEGLKHV 451 (473)
Q Consensus 445 ~~~~~~~ 451 (473)
...+..+
T Consensus 459 ~~~~~~L 465 (788)
T PRK15387 459 ERTLQAL 465 (788)
T ss_pred chHHHHH
Confidence 6544444
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-10 Score=109.69 Aligned_cols=256 Identities=20% Similarity=0.078 Sum_probs=139.9
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
..-..|+++.+. ++..+. .+ .++|+.|.+.++. ++..+ ...++|++|++++|.++. ++. ..++|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~-~l---~~~L~~L~L~~N~-Lt~LP-----~lp~~Lk~LdLs~N~Lts--LP~--lp~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPD-CL---PAHITTLVIPDNN-LTSLP-----ALPPELRTLEVSGNQLTS--LPV--LPPGLL 265 (788)
T ss_pred CCCcEEEcCCCC-CCcCCc-ch---hcCCCEEEccCCc-CCCCC-----CCCCCCcEEEecCCccCc--ccC--cccccc
Confidence 445567776652 332111 11 2467777777643 33322 134778888888776652 222 245777
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
.|++.++ .+.. +....++|+.|+++++.. ... ....++|+.|+++++. +.. ++. -..+|+.|+
T Consensus 266 ~L~Ls~N-~L~~-----Lp~lp~~L~~L~Ls~N~L-t~L-----P~~p~~L~~LdLS~N~-L~~-Lp~---lp~~L~~L~ 328 (788)
T PRK15387 266 ELSIFSN-PLTH-----LPALPSGLCKLWIFGNQL-TSL-----PVLPPGLQELSVSDNQ-LAS-LPA---LPSELCKLW 328 (788)
T ss_pred eeeccCC-chhh-----hhhchhhcCEEECcCCcc-ccc-----cccccccceeECCCCc-ccc-CCC---Ccccccccc
Confidence 7777764 2322 222235677777777652 211 1124677888877763 221 111 123577777
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (473)
+.+|.+..- .. ..++|+.|++++ +.++. ++. ..++|+.|+++++. ++. ++. ...+|+.|++++
T Consensus 329 Ls~N~L~~L--P~---lp~~Lq~LdLS~-N~Ls~--LP~---lp~~L~~L~Ls~N~-L~~--LP~---l~~~L~~LdLs~ 391 (788)
T PRK15387 329 AYNNQLTSL--PT---LPSGLQELSVSD-NQLAS--LPT---LPSELYKLWAYNNR-LTS--LPA---LPSGLKELIVSG 391 (788)
T ss_pred cccCccccc--cc---cccccceEecCC-CccCC--CCC---CCcccceehhhccc-ccc--Ccc---cccccceEEecC
Confidence 777766531 11 124677888877 45442 221 12467777776654 432 221 235677888877
Q ss_pred CCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 390 CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+. ++. ++. ..++|+.|++++|.++... . ...+|+.|++++| +++. ++.-...+++|+.|++++|+
T Consensus 392 N~-Lt~--LP~---l~s~L~~LdLS~N~LssIP-~---l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 392 NR-LTS--LPV---LPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred Cc-ccC--CCC---cccCCCEEEccCCcCCCCC-c---chhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCCC
Confidence 43 432 111 2356778888887776432 1 1346777788777 6763 44444467788888887775
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7e-09 Score=100.88 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=101.1
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCC
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (473)
.+|++|+++|...+.......+...+|+|++|.+.+.....+++.....++|+|..|+|++++++.- ..+. .+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHH
Confidence 5778888877666555555566666788888888776656666666667788888888888776653 3333 567777
Q ss_pred eEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHH----HHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCcc
Q 012001 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN----SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (473)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (473)
.|.+.+-.-.+...+..++ .+.+|+.|++|...+..+..+. .....+|+|+.|+.++ ..++...++.+...-|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 7777764333334555555 5778888888765544333111 1112367777777777 55666777766666666
Q ss_pred CCeeeec
Q 012001 408 LEELDIT 414 (473)
Q Consensus 408 L~~L~l~ 414 (473)
|+.+.+-
T Consensus 277 L~~i~~~ 283 (699)
T KOG3665|consen 277 LQQIAAL 283 (699)
T ss_pred Hhhhhhh
Confidence 6666544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.4e-09 Score=101.18 Aligned_cols=156 Identities=22% Similarity=0.251 Sum_probs=85.1
Q ss_pred CCCeeEecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 304 MLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 304 ~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
+|++|+++|.. +....+..++..+|+|++|.+.+ ..+..+.+..++.++|+|..|+|+++. +++. ...+++++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccH
Confidence 44555554433 22334445555666666666666 344444466666666666666666643 4433 223456666
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh---hhhhhh---cCCCCCeeecCCCCCcchHHHHHHHhcCc
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE---GLKSIS---RCSKLSSLKLGICSNITDEGLKHVGSTCS 456 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 456 (473)
+.|.+.+-+.-+...+..+. ++++|+.||++.....+. ...++. .+|+|+.|+.++. .++...+..+...-|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 66666554332334445555 667777777766321111 111222 2667777777776 666666666666666
Q ss_pred cCCeeecCCC
Q 012001 457 MLKELDLYRF 466 (473)
Q Consensus 457 ~L~~L~l~~c 466 (473)
+|+.+.+-+|
T Consensus 276 ~L~~i~~~~~ 285 (699)
T KOG3665|consen 276 NLQQIAALDC 285 (699)
T ss_pred cHhhhhhhhh
Confidence 6666554443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-09 Score=87.47 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=63.9
Q ss_pred CEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCccccc-ccCcccCee
Q 012001 153 ERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV-VKLQYLEDL 231 (473)
Q Consensus 153 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L 231 (473)
+-|.+.++..-+...+..+...+..++.+++.++..-.-..+..+.+++|.|+.|+++.|.+. ..+..+ ....+|+.+
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEE
Confidence 344444443222233455666677888888877643344456777778888888888888665 233444 255677777
Q ss_pred eccCCCCCChHHHHHHHhcCCCCcEEecCCC
Q 012001 232 VLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (473)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (473)
.+.+ +.+.-.....+...+|.+++|.++.+
T Consensus 127 VLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 127 VLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 7777 44444433334444566666655543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-09 Score=86.89 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhh-hCCCCCCeeEecCCcCChhHHHHH
Q 012001 245 ASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL-HNFPMLQSIKFEDCPVARSGIKAI 323 (473)
Q Consensus 245 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l 323 (473)
..++..+..++.+++.++....-..+..+...+|.|+.|+++.+...+ .+ ..+ ....+|+.|-+.|..+.-.....+
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DI-KSLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-cc-ccCcccccceEEEEEcCCCCChhhhhhh
Confidence 334444555566666555432223444555556666666665542211 11 111 233455666666555544444444
Q ss_pred HhhCCCCCeEecCC
Q 012001 324 GNWHGSLKELSLSK 337 (473)
Q Consensus 324 ~~~~~~L~~L~l~~ 337 (473)
...+|.+++|.++.
T Consensus 142 l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 142 LDDLPKVTELHMSD 155 (418)
T ss_pred hhcchhhhhhhhcc
Confidence 44455555555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=77.98 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=19.6
Q ss_pred cCcccceeecccccc---CchhHHHhhhCCCCCCeeEecCCcCCh
Q 012001 276 GADYLQQLILAYSFW---VSADLSKCLHNFPMLQSIKFEDCPVAR 317 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~ 317 (473)
+||+|+..+++++.. ....+...+.+...|++|.+++|.++.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 345555555544322 112233344455556666666655443
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-08 Score=62.20 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=33.2
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
+|.+||+|++.+||+ +++ ..|+.+++.|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~-~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILS-YLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHH-TS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHH-HCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 578999999999999 997 999999999999999987654
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-08 Score=79.45 Aligned_cols=105 Identities=23% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh-hhhhhhcCCC
Q 012001 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSK 431 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 431 (473)
+.+|+.|++++|. ++.. ..+ ..+++|+.|++++ +.++..+ ..+...+|+|++|++++|.+.+. .+..++.+|+
T Consensus 41 l~~L~~L~Ls~N~-I~~l--~~l-~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKL--EGL-PGLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCC-Cccc--cCc-cChhhhhhcccCC-CCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 3455666665544 3321 111 2356666666666 3344321 11222467777777777766552 2344556777
Q ss_pred CCeeecCCCCCcchH-HHH-HHHhcCccCCeeecC
Q 012001 432 LSSLKLGICSNITDE-GLK-HVGSTCSMLKELDLY 464 (473)
Q Consensus 432 L~~L~l~~~~~l~~~-~~~-~~~~~~~~L~~L~l~ 464 (473)
|+.|++.+| .+++. ... .++..+|+|+.||-.
T Consensus 115 L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 115 LRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cceeeccCC-cccchhhHHHHHHHHcChhheeCCE
Confidence 777777777 34322 222 334467777777643
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-07 Score=73.16 Aligned_cols=194 Identities=20% Similarity=0.188 Sum_probs=116.3
Q ss_pred HHHhcCCCCcEEecCCCCccc--hHHHHHHHhcCcccceeeccccccCchh----HH---------HhhhCCCCCCeeEe
Q 012001 246 SVEYSCKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSAD----LS---------KCLHNFPMLQSIKF 310 (473)
Q Consensus 246 ~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~---------~~l~~~~~L~~L~l 310 (473)
++.. ||+|+..+++++.+-. ...+..++.+...|++|.+++|. +... +. .-..+-|.|+.+..
T Consensus 87 aLlk-cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 87 ALLK-CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHhc-CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 3444 7888888888765322 23556667777888888887763 2211 11 11234578888888
Q ss_pred cCCcCChhH---HHHHHhhCCCCCeEecCCCCCCChHHHHHHH----HhCCCCcEEecCCCCCCCHHHHHHHH---hcCC
Q 012001 311 EDCPVARSG---IKAIGNWHGSLKELSLSKCSGVTDEELSFVV----QSHKELRKLDITCCRKITYASINSIT---KTCT 380 (473)
Q Consensus 311 ~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~ 380 (473)
..|++.... .......-.+|+.+.+.. +++...++..++ ..+.+|+.|++..+. ++-.+-..++ ..++
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~ 242 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWN 242 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccc
Confidence 887654332 222332335888888877 677666554432 345788888888765 4444433333 3567
Q ss_pred CCCEEEccCCCCCCHHHHHHHHh-----cCccCCeeeecccccChhhh-----hhhh--cCCCCCeeecCCCCCcch
Q 012001 381 SLTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVNDEGL-----KSIS--RCSKLSSLKLGICSNITD 445 (473)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~-----~~l~--~~~~L~~L~l~~~~~l~~ 445 (473)
.|+.|.+..|- ++..+...... ..|+|..|-..+|.+....+ ..+. ..|-|..|.+.+| .++.
T Consensus 243 ~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 243 LLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred hhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchh
Confidence 78888888876 34333333322 35788888777764433322 2222 3677888888888 6654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=92.51 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=139.7
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
.+...|++.+.. ++..+. .+ .++|+.|+++++ .++..+.. ..++|+.|++++|.++. ....+ .++|+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~-~I---p~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~Lts-LP~~l--~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPA-CI---PEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQLTS-IPATL--PDTIQ 244 (754)
T ss_pred cCceEEEeCCCC-cCcCCc-cc---ccCCcEEEecCC-CCCcCChh----hccCCCEEECCCCcccc-CChhh--hcccc
Confidence 456677776642 332111 11 256888888775 34433322 23578888888876652 22222 34688
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
.|++++|. +...+ ..+ ..+|+.|+++++. +.. ++. .-.++|+.|+++++. +. .++..+ .++|+.|+
T Consensus 245 ~L~Ls~N~-L~~LP-~~l---~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~-Lt-~LP~~l--p~sL~~L~ 310 (754)
T PRK15370 245 EMELSINR-ITELP-ERL---PSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVYDNS-IR-TLPAHL--PSGITHLN 310 (754)
T ss_pred EEECcCCc-cCcCC-hhH---hCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECCCCc-cc-cCcccc--hhhHHHHH
Confidence 88888753 33221 112 2478888887654 221 111 112478888887763 22 122111 13677788
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (473)
+++|.+... +.. ..++|+.|.+++| .++. ++..+ .++|+.|++++|. ++.. +.. ..++|+.|++++
T Consensus 311 Ls~N~Lt~L-P~~---l~~sL~~L~Ls~N-~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~L--P~~--lp~~L~~LdLs~ 376 (754)
T PRK15370 311 VQSNSLTAL-PET---LPPGLKTLEAGEN-ALTS--LPASL--PPELQVLDVSKNQ-ITVL--PET--LPPTITTLDVSR 376 (754)
T ss_pred hcCCccccC-Ccc---ccccceeccccCC-cccc--CChhh--cCcccEEECCCCC-CCcC--Chh--hcCCcCEEECCC
Confidence 887776532 111 2367888888774 3432 22212 3688888888775 4422 111 136788888888
Q ss_pred CCCCCHHHHHHHHhcCccCCeeeecccccChhh---hhhhhcCCCCCeeecCCCCCcchHHHHHH
Q 012001 390 CKLVSWEAFVLIGQQCQYLEELDITENEVNDEG---LKSISRCSKLSSLKLGICSNITDEGLKHV 451 (473)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~l~~~~~~~~ 451 (473)
|. ++... ..+. +.|+.|++++|.++... ......++++..|++.+| .++...+..+
T Consensus 377 N~-Lt~LP-~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~~L 435 (754)
T PRK15370 377 NA-LTNLP-ENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQNM 435 (754)
T ss_pred Cc-CCCCC-HhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHHHH
Confidence 65 43211 1121 35788888888776432 112234578888888888 6765554443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-08 Score=80.11 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhh-hcCCC
Q 012001 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI-SRCSK 431 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~ 431 (473)
+..+++|++.++. ++. ++.+...+.+|+.|++++|.-.+-+++. .++.|+.|++++|.+++.+. .+ ..+|+
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----~L~~L~~L~L~~N~I~~i~~-~l~~~lp~ 89 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITKLEGLP----GLPRLKTLDLSNNRISSISE-GLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCccccCcc----ChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence 3467888888765 442 3344345789999999996633323433 67999999999999988642 33 36899
Q ss_pred CCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
|+.|.+++| ++.+.+--...+.+|+|+.|++.+||-
T Consensus 90 L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999999999 887533223334899999999999884
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-08 Score=99.83 Aligned_cols=132 Identities=23% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCcCceeecccCCC-CCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCC
Q 012001 175 CRKLKLLCLKWCIR-VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKS 253 (473)
Q Consensus 175 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 253 (473)
++.|++|-+.++.. +...+ ..++..+|.|+.|++++|.-....+..++++-+|+.|++++ +.+... +..+.+ +..
T Consensus 544 ~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~L-P~~l~~-Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHL-PSGLGN-LKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCcccc-chHHHH-HHh
Confidence 45666666655431 11111 12233566666677666543334555566666666666666 334422 222333 556
Q ss_pred CcEEecCCCCccchHHHHHHHhcCcccceeeccccc-cCchhHHHhhhCCCCCCeeEecC
Q 012001 254 LKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF-WVSADLSKCLHNFPMLQSIKFED 312 (473)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~ 312 (473)
|.+|++......... ......+++|++|.+.... ..+......+.++.+|+.+.+..
T Consensus 620 L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred hheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 666666544322211 2333445666666665432 22223333444455555555433
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-07 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=32.2
Q ss_pred CcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 15 LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
||+|++..||. +++ ..|+.+++.|||+|+.++...
T Consensus 1 lP~~ll~~I~~-~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILS-KLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999 997 999999999999999987544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-07 Score=78.89 Aligned_cols=126 Identities=19% Similarity=0.158 Sum_probs=51.4
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
.|+++++++ +.++. +....+-.|.++.|+++++.-..... + ..+++|+.|+++++. ++. +..+-..+-|+
T Consensus 285 ~LtelDLS~-N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n---L-a~L~~L~~LDLS~N~-Ls~--~~Gwh~KLGNI 354 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQ--IDESVKLAPKLRRLILSQNRIRTVQN---L-AELPQLQLLDLSGNL-LAE--CVGWHLKLGNI 354 (490)
T ss_pred hhhhccccc-cchhh--hhhhhhhccceeEEeccccceeeehh---h-hhcccceEeecccch-hHh--hhhhHhhhcCE
Confidence 344555554 23321 22223334555555555443222111 1 234555555555422 211 11122234455
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++|.+..|.+.+. ..+.++-+|..|++++| ++....-..-++++|.|+++.+.++|
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 5555555544331 23334445555555555 44432212222245555555555544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=86.03 Aligned_cols=254 Identities=15% Similarity=0.128 Sum_probs=140.3
Q ss_pred CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC
Q 012001 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (473)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (473)
.+...|++++. .++..+. .+ .++|+.|++.++. ++..+... .++|+.|+++++. +...+.. ..++|
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-~I--p~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N~-LtsLP~~----l~~~L 243 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-CI--PEQITTLILDNNE-LKSLPENL----QGNIKTLYANSNQ-LTSIPAT----LPDTI 243 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-cc--ccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCCc-cccCChh----hhccc
Confidence 45677887765 3443321 12 2468888887763 44322111 3578888887753 4332211 12468
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.|++++|.+.. ....+ ..+|+.|++++ +.+...+ ..+ .++|+.|+++++.. +.. ...+ .++|+.|+
T Consensus 244 ~~L~Ls~N~L~~-LP~~l--~s~L~~L~Ls~-N~L~~LP-~~l---~~sL~~L~Ls~N~L-t~L--P~~l--p~sL~~L~ 310 (754)
T PRK15370 244 QEMELSINRITE-LPERL--PSALQSLDLFH-NKISCLP-ENL---PEELRYLSVYDNSI-RTL--PAHL--PSGITHLN 310 (754)
T ss_pred cEEECcCCccCc-CChhH--hCCCCEEECcC-CccCccc-ccc---CCCCcEEECCCCcc-ccC--cccc--hhhHHHHH
Confidence 888888886652 22222 24688888876 3444221 111 35788888887652 211 1101 13577777
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++.. . .++.. -.++|+.|++.+|.++.- +..+ +++|+.|+++++ .++. ++..+ .++|+.|++++|
T Consensus 311 Ls~N~L-t-~LP~~--l~~sL~~L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 311 VQSNSL-T-ALPET--LPPGLKTLEAGENALTSL-PASL---PPELQVLDVSKN-QITV--LPETL--PPTITTLDVSRN 377 (754)
T ss_pred hcCCcc-c-cCCcc--ccccceeccccCCccccC-Chhh---cCcccEEECCCC-CCCc--CChhh--cCCcCEEECCCC
Confidence 776532 2 11211 135788888888776542 2222 368888888874 4442 22222 267888888877
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCH--HHHHHHHhcCccCCeeeecccccChhhhh
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSW--EAFVLIGQQCQYLEELDITENEVNDEGLK 424 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (473)
. ++.... .+ .+.|+.|+++++. ++. ..+..+...++++..|++.+|.++...+.
T Consensus 378 ~-Lt~LP~-~l---~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 378 A-LTNLPE-NL---PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred c-CCCCCH-hH---HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence 5 442211 11 1357777777754 432 23444444567888888888887765444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.3e-07 Score=90.51 Aligned_cols=34 Identities=9% Similarity=-0.093 Sum_probs=16.2
Q ss_pred CcccCcHHHHHHHHhhhcCC--hhhhhhhhhhhhhHHH
Q 012001 11 PFDFLSEEIIFNILDHLNND--PFARKSFSLTCRNFYS 46 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~--~~d~~~~~~vc~~w~~ 46 (473)
+.+.|| +-+-+-|- |+.- ...-...-.+...|-+
T Consensus 404 Syd~L~-~~lK~CFL-ycalFPED~~I~~e~Li~yWia 439 (889)
T KOG4658|consen 404 SYDNLP-EELKSCFL-YCALFPEDYEIKKEKLIEYWIA 439 (889)
T ss_pred cHhhhh-HHHHHHHH-hhccCCcccccchHHHHHHHHh
Confidence 456666 44445554 3321 2333445555566653
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-07 Score=60.32 Aligned_cols=60 Identities=28% Similarity=0.262 Sum_probs=34.0
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
|+|++|++++|.++......+..+++|++|++++| .++.... .....+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 45666666666666555555556666666666666 5553222 223356666666666653
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-06 Score=68.72 Aligned_cols=83 Identities=14% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCC
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (473)
++.++-++ ..+..+++..+ ..++.++.|.+.+|..+.|..+..+.+-.++|+.|++++|+.||+.++..+. .+++|+
T Consensus 103 IeaVDAsd-s~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCC-chHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 34444454 34555555543 3566777777777777777777777666677777777777777777777666 667777
Q ss_pred eeeecc
Q 012001 410 ELDITE 415 (473)
Q Consensus 410 ~L~l~~ 415 (473)
.|++.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 776655
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-06 Score=68.70 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=82.6
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (473)
.++.++-+++.+..+++..+. .++.++.|.+.+|..+.|..+..+-...++|+.|+|++|+.||+.++..+. .+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 467778888888889999987 889999999999999999998888777799999999999999999998774 689999
Q ss_pred EEEccCCCCCCHHHH--HHHHhcCccCC
Q 012001 384 SLRMECCKLVSWEAF--VLIGQQCQYLE 409 (473)
Q Consensus 384 ~L~l~~~~~~~~~~~--~~~~~~~~~L~ 409 (473)
.|.+.+-..+...+. ..+...+|+++
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~ 207 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCD 207 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCcccc
Confidence 999987655543222 22333455544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-08 Score=77.56 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=75.7
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
..+++.|.++++... .++..+..+.+|+.|++.++.+.+ .+..+. .+++|+.|.++- +.+. .++.-+.++|.|
T Consensus 32 ~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie~-lp~~is-sl~klr~lnvgm-nrl~--~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIEE-LPTSIS-SLPKLRILNVGM-NRLN--ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhhh-cChhhh-hchhhhheecch-hhhh--cCccccCCCchh
Confidence 345666666665322 334455666677777777766543 222233 566666666654 2221 123334556666
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeee
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (473)
+.|++.++. +....++.-.-.+..|+-|.++..+ + +.++.-...+.+|+.|.+.+|.+-.. +..++.+..|++|+
T Consensus 105 evldltynn-l~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELH 179 (264)
T ss_pred hhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHh
Confidence 666666543 3322222111122344444444322 1 11111122556666666666544332 24455566666666
Q ss_pred cCCCCCcc
Q 012001 437 LGICSNIT 444 (473)
Q Consensus 437 l~~~~~l~ 444 (473)
+.+| .++
T Consensus 180 iqgn-rl~ 186 (264)
T KOG0617|consen 180 IQGN-RLT 186 (264)
T ss_pred cccc-eee
Confidence 6666 554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-06 Score=56.94 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
|+|+.|++++| .++.-.-..+. .+++|+.|++++|.++......+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57788888875 35433222232 7899999999999999888788889999999999998
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-06 Score=72.99 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=43.8
Q ss_pred CCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCH-HHHHHHHhcCc
Q 012001 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW-EAFVLIGQQCQ 406 (473)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~ 406 (473)
|.++.|+++. +.+...+ . ++.+++|+.|+++++. ++ .+...-..+-+++.|.++++. +.+ .++. .+-
T Consensus 307 Pkir~L~lS~-N~i~~v~--n-La~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~----KLY 374 (490)
T KOG1259|consen 307 PKLRRLILSQ-NRIRTVQ--N-LAELPQLQLLDLSGNL-LA--ECVGWHLKLGNIKTLKLAQNK-IETLSGLR----KLY 374 (490)
T ss_pred cceeEEeccc-cceeeeh--h-hhhcccceEeecccch-hH--hhhhhHhhhcCEeeeehhhhh-HhhhhhhH----hhh
Confidence 5555555555 3333211 1 3344555555555543 11 111111134455555555422 211 1222 233
Q ss_pred cCCeeeecccccChh-hhhhhhcCCCCCeeecCCC
Q 012001 407 YLEELDITENEVNDE-GLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 407 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 440 (473)
+|..|++++|+|... .+..++++|.|+.+.+.+|
T Consensus 375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 455555555544432 2334555555555555555
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.9e-08 Score=73.78 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=13.0
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
+++.|.+++++++ ...+.++.+.+|+.|++.+
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~n 65 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSN 65 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhccc
Confidence 3344444444433 2333344444444444443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.9e-06 Score=78.43 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHh-cCccCCeeeecccccChhhhhhhhc
Q 012001 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-QCQYLEELDITENEVNDEGLKSISR 428 (473)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (473)
++-+|.|+.|+++.+. +++.. ....|+.|+.|+|+++. +.. +..+.. .|. |..|.+.+|.++.. ..+.+
T Consensus 183 Lqll~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHhhhhccchhh-hhhhH---HHHhcccccccccccch-hcc--ccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 4445677778887765 44322 22467888888887633 322 112211 333 77788887766543 34667
Q ss_pred CCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+.+|+.|++++| -+.+..--.....+..|+.|.+.|+|
T Consensus 253 LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 778888888887 55443322233356678888888776
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-06 Score=80.68 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=115.1
Q ss_pred HHHHHhhCCCCcEEeeccccCCC-CcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHH
Q 012001 194 VELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSS 272 (473)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (473)
+..+..-.++++.|.+-...-.+ ..+-.+..+..|++|.+.+|+--+..++..+.. .|++|.-.+. -.++..
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~S----l~Al~~ 148 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNS----LDALRH 148 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhcc----HHHHHH
Confidence 34444455666666665542211 124456678888999988876544444433333 4555433211 122333
Q ss_pred HHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcC--ChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHH
Q 012001 273 LIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV--ARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV 350 (473)
Q Consensus 273 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (473)
++..+- ..+.+. + ....|...+.+.|.+ .|..++. ++.|+.|++++ +.+++.+ .+
T Consensus 149 v~ascg----------gd~~ns-~----~Wn~L~~a~fsyN~L~~mD~SLql----l~ale~LnLsh-Nk~~~v~---~L 205 (1096)
T KOG1859|consen 149 VFASCG----------GDISNS-P----VWNKLATASFSYNRLVLMDESLQL----LPALESLNLSH-NKFTKVD---NL 205 (1096)
T ss_pred HHHHhc----------cccccc-h----hhhhHhhhhcchhhHHhHHHHHHH----HHHhhhhccch-hhhhhhH---HH
Confidence 332210 000000 0 001334444444442 2334433 36888888888 5665433 46
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcC
Q 012001 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRC 429 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~ 429 (473)
..|+.|++|+|+++. +....-... ..|. |..|.++++.--+-.+++ ++.+|+.||+++|-+.+-. +.-+..+
T Consensus 206 r~l~~LkhLDlsyN~-L~~vp~l~~-~gc~-L~~L~lrnN~l~tL~gie----~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNC-LRHVPQLSM-VGCK-LQLLNLRNNALTTLRGIE----NLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred Hhcccccccccccch-hccccccch-hhhh-heeeeecccHHHhhhhHH----hhhhhhccchhHhhhhcchhhhHHHHH
Confidence 678899999998764 332211111 1233 889999885432334444 7789999999998666532 2234457
Q ss_pred CCCCeeecCCCC
Q 012001 430 SKLSSLKLGICS 441 (473)
Q Consensus 430 ~~L~~L~l~~~~ 441 (473)
..|+.|.|.||+
T Consensus 279 s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 279 SSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHhhcCCc
Confidence 789999999993
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=43.02 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=26.8
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
++|++|++++|.+++.. ..++++++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCC-CCCC
Confidence 46888888888888654 24778888888888888 6663
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00022 Score=70.21 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=63.3
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCee
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (473)
++.|+++++. +... +......+++|+.|+++++. +....-..+. .+++|+.|++++|.++...+..++++++|+.|
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSGNS-IRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCCCc-ccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 5667776654 3222 11223457788888887754 3322222232 67788888888887777666677778888888
Q ss_pred ecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 436 KLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
++++| .++...-..+.....++..+++.+|+.
T Consensus 496 ~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 88887 565322222332334556666665544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00046 Score=64.60 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=57.7
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+++|+.|++.+|++.+-..... ..++|+.|++++ +.+.+ ++........|+++.++++..+... ....
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L~ls~-N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~---~~~~ 229 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLS--NLSNLNNLDLSG-NKISD--LPPEIELLSALEELDLSNNSIIELL---SSLS 229 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhh--hhhhhhheeccC-Ccccc--CchhhhhhhhhhhhhhcCCcceecc---hhhh
Confidence 34455555555555555443222210 235555555555 33332 2222222233555555554212111 1112
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
.+.++..+.+.+.. +.+ +......+++++.|++++|.+++... ++...+++.|+++++
T Consensus 230 ~~~~l~~l~l~~n~-~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 230 NLKNLSGLELSNNK-LED--LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred hcccccccccCCce-eee--ccchhccccccceecccccccccccc--ccccCccCEEeccCc
Confidence 33444444433311 211 01112255566666666666666543 555666666666665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00016 Score=60.52 Aligned_cols=111 Identities=21% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCH-HHHHHHHhcC
Q 012001 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW-EAFVLIGQQC 405 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 405 (473)
+.+.++|+.-+| +++|.. ++..+|.|+.|.++-+. ++. +..+ ..|.+|++|.+..+. |.+ ..+..+. ++
T Consensus 18 l~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNk-Iss--L~pl-~rCtrLkElYLRkN~-I~sldEL~YLk-nl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNK-ISS--LAPL-QRCTRLKELYLRKNC-IESLDELEYLK-NL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHH---HHHhcccceeEEeeccc-ccc--chhH-HHHHHHHHHHHHhcc-cccHHHHHHHh-cC
Confidence 346666766665 455433 35566777777776543 332 2222 356777777776532 433 3344444 67
Q ss_pred ccCCeeeecccccChh-hhhh----hhcCCCCCeeecCCCCCcchHHHHH
Q 012001 406 QYLEELDITENEVNDE-GLKS----ISRCSKLSSLKLGICSNITDEGLKH 450 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~-~~~~----l~~~~~L~~L~l~~~~~l~~~~~~~ 450 (473)
|+|+.|+|..|.-... |..+ +.-+|+|+.|+ |..++...+..
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ 134 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEE 134 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHH
Confidence 7777777766533222 2222 22366666663 33555555543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=65.43 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
++.|++.++.+....+..+. .+++|+.|+++++ .+.. .++..+..+++|+.|+++++. ++.. ++.....+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~-lsg~-iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNS-FNGS-IPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCC-CCCC-CchHHhcCCCCCE
Confidence 55566666655544444444 5566666666653 3322 133344556666666666654 3221 1222235666666
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
|+++++. ++...-..+.....++..+++.+|
T Consensus 495 L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 495 LNLNGNS-LSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECcCCc-ccccCChHHhhccccCceEEecCC
Confidence 6666643 332222222212234555666655
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00063 Score=63.67 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=111.5
Q ss_pred cccceeeccccccCchhHHHhhhCC-CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+.++.|++.+... ..+....... ++|+.|+++++.+.... ..+. .+++|+.|++++ +.+++ +.......++|
T Consensus 116 ~~l~~L~l~~n~i--~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~-~l~~L~~L~l~~-N~l~~--l~~~~~~~~~L 188 (394)
T COG4886 116 TNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNKIESLP-SPLR-NLPNLKNLDLSF-NDLSD--LPKLLSNLSNL 188 (394)
T ss_pred cceeEEecCCccc--ccCccccccchhhcccccccccchhhhh-hhhh-ccccccccccCC-chhhh--hhhhhhhhhhh
Confidence 4555555554421 1233333444 37888888888766432 2233 779999999998 45553 33333367899
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeee
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (473)
+.|+++++. +.+.... ......|+++.+++...+.. ...+. .++++..+.+.+|.+.+. ...++.+++++.|+
T Consensus 189 ~~L~ls~N~-i~~l~~~--~~~~~~L~~l~~~~N~~~~~--~~~~~-~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~ 261 (394)
T COG4886 189 NNLDLSGNK-ISDLPPE--IELLSALEELDLSNNSIIEL--LSSLS-NLKNLSGLELSNNKLEDL-PESIGNLSNLETLD 261 (394)
T ss_pred hheeccCCc-cccCchh--hhhhhhhhhhhhcCCcceec--chhhh-hcccccccccCCceeeec-cchhccccccceec
Confidence 999999875 5533322 12344599999988542222 11122 667888888888877663 24466788899999
Q ss_pred cCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 437 LGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 437 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+++| .+++.. . .....+++.|++++...
T Consensus 262 ~s~n-~i~~i~--~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 262 LSNN-QISSIS--S-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccc-cccccc--c-ccccCccCEEeccCccc
Confidence 9999 888533 3 44788999999988654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00021 Score=67.16 Aligned_cols=111 Identities=27% Similarity=0.417 Sum_probs=59.7
Q ss_pred CCCCCeEecCCCCCCChHHHHH---HHHhCCC-CcEEecCCCCCCCHHHHHHHHhcC----CCCCEEEccCCCCCCHHHH
Q 012001 327 HGSLKELSLSKCSGVTDEELSF---VVQSHKE-LRKLDITCCRKITYASINSITKTC----TSLTSLRMECCKLVSWEAF 398 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~ 398 (473)
..++++|.+..| .++...... .+...+. +..+++..+. +.+.++..+...+ +.++.++++.|. +++.+.
T Consensus 203 ~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~ 279 (478)
T KOG4308|consen 203 LSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGV 279 (478)
T ss_pred cccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccch
Confidence 345666777664 333332222 2333333 5556666543 6666555544433 345777777755 444433
Q ss_pred HHH---HhcCccCCeeeecccccChhhhhhhh----cCCCCCeeecCCC
Q 012001 399 VLI---GQQCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGIC 440 (473)
Q Consensus 399 ~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~ 440 (473)
..+ ...++.++.+.++.|.+++.+...+. ....+..+.+.++
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 332 22566777777777777776655543 2445556666555
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=33.84 Aligned_cols=24 Identities=50% Similarity=0.920 Sum_probs=18.7
Q ss_pred CCCCCeeecCCCCCcchHHHHHHH
Q 012001 429 CSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
|++|++|++++|+++++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888877665
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00017 Score=59.84 Aligned_cols=63 Identities=33% Similarity=0.389 Sum_probs=42.3
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCC-CcccccccCcccCeeeccCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCH 237 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 237 (473)
+|+|+.|.++.+..-...++..++..+|+|+++++++|++.+ ..+..+..+++|..|.+..|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 678888888776434445566666677888888888886653 334444566677777776654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00099 Score=39.37 Aligned_cols=35 Identities=31% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++|++|++++| ++++ ++....++++|++|++++|+
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCC
Confidence 58999999999 9995 55546699999999999995
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00025 Score=59.35 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=75.2
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh-hhhhhhcCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKL 432 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L 432 (473)
.+.+.|+..+|. ++|..+. ...|.|+.|.++- +.|+. +..+. .|++|++|.|..|.|.+. .+.++.++|+|
T Consensus 19 ~~vkKLNcwg~~-L~DIsic---~kMp~lEVLsLSv-NkIss--L~pl~-rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISIC---EKMPLLEVLSLSV-NKISS--LAPLQ-RCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCC-ccHHHHH---HhcccceeEEeec-ccccc--chhHH-HHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 467888998886 7766543 5689999999987 43432 33333 899999999999877764 45678899999
Q ss_pred CeeecCCCCCcchHHHH---HHHhcCccCCeee
Q 012001 433 SSLKLGICSNITDEGLK---HVGSTCSMLKELD 462 (473)
Q Consensus 433 ~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~ 462 (473)
+.|.|..|+.....|-. ...+.+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998777654433 3556789998875
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.002 Score=33.04 Aligned_cols=24 Identities=21% Similarity=0.500 Sum_probs=13.1
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHH
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIG 402 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~ 402 (473)
|++|+.|++++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345555555555555555555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00041 Score=57.68 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=75.1
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh-hhhhhhcCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCS 430 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~ 430 (473)
.+..|+.+++.++...+...+ ..+|+|++|.++....--..++..++..+|+|+++++++|.+.+. .+..+..++
T Consensus 41 ~~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 345667777666543332222 247899999998753334466777777889999999999988862 223344678
Q ss_pred CCCeeecCCCCCcch-H-HHHHHHhcCccCCeeecCCCCC
Q 012001 431 KLSSLKLGICSNITD-E-GLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~-~-~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+|..|++.+| ..+. . .=..+..-+++|++|+-.++..
T Consensus 117 nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 117 NLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcccC-CccccccHHHHHHHHhhhhccccccccCC
Confidence 8999999999 4432 1 1224445789999988776543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00072 Score=63.59 Aligned_cols=208 Identities=21% Similarity=0.258 Sum_probs=131.1
Q ss_pred CcEEecCCCCc--cchHHHHHHHhcCcccceeeccccccCchhHHHh----hhCC-CCCCeeEecCCcCChhHHHHHHh-
Q 012001 254 LKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC----LHNF-PMLQSIKFEDCPVARSGIKAIGN- 325 (473)
Q Consensus 254 L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~l~~- 325 (473)
+..+.+.+|.. .....+.......++|+.|+++++... +..... +... ..++.|++..|.++..+...+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 44455554441 122345556677889999999887544 333322 2233 56788889889888777665553
Q ss_pred --hCCCCCeEecCCCCCCChHHHHHH---HHh----CCCCcEEecCCCCCCCHHHHHHHHh---cCCC-CCEEEccCCCC
Q 012001 326 --WHGSLKELSLSKCSGVTDEELSFV---VQS----HKELRKLDITCCRKITYASINSITK---TCTS-LTSLRMECCKL 392 (473)
Q Consensus 326 --~~~~L~~L~l~~~~~~~~~~~~~~---~~~----~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~-L~~L~l~~~~~ 392 (473)
..+.++.+++..+. +...+.... ++. ..++++|.+.+|. ++......+.. ..+. +..+++.. +.
T Consensus 168 L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~-n~ 244 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS-NK 244 (478)
T ss_pred HhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-cC
Confidence 35678888887743 333333222 222 3578889998886 66555544433 3344 55577766 55
Q ss_pred CCHHHHHHHHhcC----ccCCeeeecccccChhhhhhhh----cCCCCCeeecCCCCCcchHHHHHHHh---cCccCCee
Q 012001 393 VSWEAFVLIGQQC----QYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEGLKHVGS---TCSMLKEL 461 (473)
Q Consensus 393 ~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L 461 (473)
+.+.+...+...+ +.++.++++.|.+++.+...+. .++.++.+.++.| .+++.+.....+ ....+..+
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~~~ 323 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLLHL 323 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccchhh
Confidence 7777776665544 4568999999999988777655 5789999999999 777766665554 23344444
Q ss_pred ecCCC
Q 012001 462 DLYRF 466 (473)
Q Consensus 462 ~l~~c 466 (473)
.+.++
T Consensus 324 ~l~~~ 328 (478)
T KOG4308|consen 324 VLGGT 328 (478)
T ss_pred hcccc
Confidence 44433
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00074 Score=53.81 Aligned_cols=36 Identities=25% Similarity=0.131 Sum_probs=14.8
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
.+++|.+|.+.+|.++.....--..+|+|..|.+.+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 334455555555544432222222244444444444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0052 Score=55.91 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=5.5
Q ss_pred CCCEEEccCCC
Q 012001 381 SLTSLRMECCK 391 (473)
Q Consensus 381 ~L~~L~l~~~~ 391 (473)
+|+.|.+++|.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 45555555444
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0026 Score=57.02 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 10 ~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
.+|+.||+|++..|.. .|+...|+.+.+.||+.||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~-~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAG-RLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHh-hCCcHHHHHHHHhhhhhHHHhccc
Confidence 3689999999999999 998789999999999999987543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0015 Score=48.58 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (473)
..+..++++.|.-..-............|+..+++++. +.+. -+.+....|.++.|++.+|.+++...+ ++.+|.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALR 103 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhh
Confidence 45677888888744333444444456778888888733 3322 224444667899999999999998755 88999999
Q ss_pred eeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 434 SLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 434 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
.|+++.| .+.. ...-+. .+.++-.|+..++
T Consensus 104 ~lNl~~N-~l~~-~p~vi~-~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 104 SLNLRFN-PLNA-EPRVIA-PLIKLDMLDSPEN 133 (177)
T ss_pred hcccccC-cccc-chHHHH-HHHhHHHhcCCCC
Confidence 9999999 5542 122233 3556666555444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0079 Score=54.75 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=74.2
Q ss_pred HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhC
Q 012001 274 IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH 353 (473)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (473)
+..+.++++|++++| .+. .++ .-.++|+.|.+.+|.-....+..+ .++|++|.+.+|..+.. -.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~s--------LP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIE-SLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISG--------LP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCc-ccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccc--------cc
Confidence 445688888888877 222 122 122368888888765332222222 25788888888755431 12
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC-ccCCeeeecccccChhhhhhhhcCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKL 432 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (473)
++|+.|.+.+.. ... + ..-.++|+.|.+.++.......+. ..+ ++|+.|++++|...... ..+ -.+|
T Consensus 112 ~sLe~L~L~~n~-~~~--L---~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP-~~L--P~SL 179 (426)
T PRK15386 112 ESVRSLEIKGSA-TDS--I---KNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILP-EKL--PESL 179 (426)
T ss_pred cccceEEeCCCC-Ccc--c---ccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCc-ccc--cccC
Confidence 467777776422 111 1 112346777777542211111111 012 57888988887543211 111 2478
Q ss_pred CeeecCCC
Q 012001 433 SSLKLGIC 440 (473)
Q Consensus 433 ~~L~l~~~ 440 (473)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88888765
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0018 Score=48.21 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
.+..++++.|.-..-......+.....|+..+++++. +.+. .+.+...+|.++.|++++ +.+++...+ ++ .+|.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHHh
Confidence 4566777777432212223334445678888888754 3322 234555688999999988 446665544 55 88999
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCe
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 460 (473)
+.|++.+|.+.... ..+..+.++-.|+..++ .........+....+.|..
T Consensus 103 r~lNl~~N~l~~~p-~vi~~L~~l~~Lds~~n-a~~eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEP-RVIAPLIKLDMLDSPEN-ARAEIDVDLFYSSLPALIK 152 (177)
T ss_pred hhcccccCccccch-HHHHHHHhHHHhcCCCC-ccccCcHHHhccccHHHHH
Confidence 99999999887654 45566888888888888 5554444444444444443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.003 Score=50.52 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=69.4
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKL 432 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 432 (473)
.+...++++++....... ..++++|..|.+++ +.++... +.+..-+|+|+.|.+.+|.+...+ +.-++.||+|
T Consensus 42 d~~d~iDLtdNdl~~l~~----lp~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN----LPHLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhccc----CCCccccceEEecC-Ccceeec-cchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 355667776654222211 13678999999988 4465422 122334589999999998776644 3456789999
Q ss_pred CeeecCCCCCcchHH-HH-HHHhcCccCCeeecCC
Q 012001 433 SSLKLGICSNITDEG-LK-HVGSTCSMLKELDLYR 465 (473)
Q Consensus 433 ~~L~l~~~~~l~~~~-~~-~~~~~~~~L~~L~l~~ 465 (473)
++|.+-+| .++... .. .+...+|+|+.||..+
T Consensus 116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 99999999 555422 22 2334789999998865
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0036 Score=53.43 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=33.5
Q ss_pred CCCCcccCcHHHHHHHHhhhc----CChhhhhhhhhhhhhHHHHHhh
Q 012001 8 NSNPFDFLSEEIIFNILDHLN----NDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~l----~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
....|..||+||+..||. .+ -|.+++.++|+|||.|+-.+..
T Consensus 103 ~~~~~~~LPdEvLm~I~~-~vv~~~~d~rsL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFR-WVVSSLLDLRSLEQLSLVCRGFYKCARD 148 (366)
T ss_pred hhhhhhhCCHHHHHHHHH-HHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence 344578999999999998 43 2468999999999999976543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0035 Score=31.40 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=8.0
Q ss_pred ccCCeeeecccccChhhhhh
Q 012001 406 QYLEELDITENEVNDEGLKS 425 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~ 425 (473)
++|++|+|++|.+++.++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34444444444444444443
|
... |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.013 Score=50.51 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=36.0
Q ss_pred CCCcccCc----HHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 9 SNPFDFLS----EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 9 ~~~~~~LP----~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
.|.+..|| ++|.+.||+ ||. ..+++.+-+|||+|+++...
T Consensus 72 rDFi~~lP~~gl~hi~e~ils-yld-~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILS-YLD-ALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHHHHhcccccHHHHHHHHHH-hcc-hhhhhHHHHHHHHHHHHhcc
Confidence 46788999 999999999 995 99999999999999998654
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.024 Score=28.31 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=17.5
Q ss_pred CCCCCeeecCCCCCcchHHHHHHH
Q 012001 429 CSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
+++|+.|+|++| .+++.++..+.
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 578999999999 89999888765
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.0066 Score=57.07 Aligned_cols=55 Identities=22% Similarity=0.141 Sum_probs=25.6
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
+++|++|+++++......++. .++.|+.|++.+|.+. .+..+..+++|+.+++++
T Consensus 117 ~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~--~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLIS--DISGLESLKSLKLLDLSY 171 (414)
T ss_pred hhcchheeccccccccccchh----hccchhhheeccCcch--hccCCccchhhhcccCCc
Confidence 555555555554322222222 2334555666655443 233333455555555555
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.029 Score=52.81 Aligned_cols=106 Identities=24% Similarity=0.262 Sum_probs=68.8
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (473)
.+.+|+.|++.+ +.+.. +...+..+++|+.|+++++. +++. ..+ ..++.|+.|+++++.-.+-.++. .+
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~-I~~i--~~l-~~l~~L~~L~l~~N~i~~~~~~~----~l 161 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNK-ITKL--EGL-STLTLLKELNLSGNLISDISGLE----SL 161 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheeccccc-cccc--cch-hhccchhhheeccCcchhccCCc----cc
Confidence 567888888887 45442 23324567889999998865 4422 112 23566888888885422222222 36
Q ss_pred ccCCeeeecccccChhhh-hhhhcCCCCCeeecCCCCCcc
Q 012001 406 QYLEELDITENEVNDEGL-KSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~ 444 (473)
++|+.+++++|.+++... . +..+.+++.+.+.+| .+.
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n-~i~ 199 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN-SIR 199 (414)
T ss_pred hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC-chh
Confidence 788888888888777653 2 456888888888888 444
|
|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.15 Score=36.87 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=26.6
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhh
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCR 42 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~ 42 (473)
.+.+||.||+..||. +.. ..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~-~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFD-YCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHh-hcC-cHHHHHHHHHHH
Confidence 378899999999999 886 888888888888
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.11 Score=26.99 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=12.1
Q ss_pred ccCCeeeecccccChhhhhhhh
Q 012001 406 QYLEELDITENEVNDEGLKSIS 427 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~ 427 (473)
++|++|+|++|.+++.+...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3455566666666555555443
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.24 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.1
Q ss_pred CCCCeeecCCCCCcchHHHHHHHhcC
Q 012001 430 SKLSSLKLGICSNITDEGLKHVGSTC 455 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~ 455 (473)
++|++|+|++| .+++.|...+.+.+
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHHh
Confidence 68999999999 99999988776543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.0083 Score=55.86 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=17.1
Q ss_pred CCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
|..||++.|+++... ..+.++..|++|-|.+|
T Consensus 213 Li~lDfScNkis~iP-v~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLP-VDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeecccCceeecc-hhhhhhhhheeeeeccC
Confidence 555555555555443 23444555555555555
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.51 Score=44.36 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=22.1
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (473)
..|.+..++++++....-+.+..++...|+|+.|+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 446666666666554444445555555666666666654
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.23 Score=22.30 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=3.5
Q ss_pred CCeeeecccc
Q 012001 408 LEELDITENE 417 (473)
Q Consensus 408 L~~L~l~~~~ 417 (473)
|+.|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 4444444443
|
... |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.011 Score=55.09 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=59.5
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCcc
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (473)
..+.|..|+.+.|+..+ +..-...+..|+.|.+..|.+.+.. ..+. .-.|..|+++.| +++. ++.-+..+..
T Consensus 164 ~~~tl~~ld~s~nei~s---lpsql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScN-kis~--iPv~fr~m~~ 235 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQS---LPSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCN-KISY--LPVDFRKMRH 235 (722)
T ss_pred cchhHHHhhhhhhhhhh---chHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccC-ceee--cchhhhhhhh
Confidence 45666667776655322 1111125677888888888776654 3454 557899999999 8884 5655558999
Q ss_pred CCeeecCCCCCcccC
Q 012001 458 LKELDLYRFVTFHLS 472 (473)
Q Consensus 458 L~~L~l~~c~~l~~~ 472 (473)
|++|.+.++|-=+..
T Consensus 236 Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 236 LQVLQLENNPLQSPP 250 (722)
T ss_pred heeeeeccCCCCCCh
Confidence 999999999865543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.31 Score=23.58 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=8.1
Q ss_pred cCCeeeecccccC
Q 012001 407 YLEELDITENEVN 419 (473)
Q Consensus 407 ~L~~L~l~~~~~~ 419 (473)
+|+.|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666665
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.23 E-value=0.24 Score=47.80 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.9
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 6 ~~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
....+.+..||.|+...||. ||+ .+++..+++||+.|+.++...
T Consensus 102 ~~~~dfi~~lp~el~~~il~-~Ld-~~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILS-FLD-GRDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred ccccchhhcccchhcccccc-cCC-HHHhhhhhhhcchhhhhhhcc
Confidence 34567899999999999999 997 999999999999999987655
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=85.27 E-value=0.072 Score=40.61 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=3.7
Q ss_pred cCCCCcEEEcC
Q 012001 123 NCRFLTEIDLS 133 (473)
Q Consensus 123 ~~~~L~~L~l~ 133 (473)
.|.+|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 34444544443
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.12 E-value=1.4 Score=41.57 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=23.2
Q ss_pred cccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCC
Q 012001 95 SSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG 135 (473)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 135 (473)
....+.+..++++.++......+..+....|+|+.|+|+++
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555566655554455555555555666666666654
|
|
| >PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins | Back alignment and domain information |
|---|
Probab=83.12 E-value=1.1 Score=32.06 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhhh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARKSF 37 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~~~ 37 (473)
.+.|..||.||...|++ +|+ ..|+..+
T Consensus 69 ~~~w~~LP~EIk~~Il~-~L~-~~dL~~l 95 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILE-YLS-NKDLKKL 95 (97)
T ss_pred CCchhhCCHHHHHHHHH-cCC-HHHHHHH
Confidence 36899999999999999 997 8887653
|
The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 473 | ||||
| 2p1m_B | 594 | Tir1-ask1 Complex Structure Length = 594 | 3e-06 |
| >pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 2e-60
Identities = 101/486 (20%), Positives = 193/486 (39%), Gaps = 43/486 (8%)
Query: 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRK--ILKPLCAETLSRTSARYPF 72
EE++ ++ + R S SL C+++Y IE R+ + A + + R+P
Sbjct: 9 FPEEVLEHVFSFIQ-LDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPK 67
Query: 73 ITQLDLSLCPRANDDALS-----------IVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
+ ++L P D L I + SS L I L R + T L +
Sbjct: 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIA 126
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEA-KNLERLWLARCKL--ITDLGIGRIAACCRKL 178
+ + + LS+ AAIA +NL+ L L + ++ + L
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186
Query: 179 KLLCLKWC-IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC- 236
L + V+ +E + +C +++L L+ EK + + LE+L G
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246
Query: 237 HGIDDDGLASVEYSCKSLKAL-NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADL 295
+ D + + + K L LS + L ++ L L L+Y+ S DL
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306
Query: 296 SKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK--------CSGVTDEELS 347
K L P LQ + D + +G++ + + L+EL + +T++ L
Sbjct: 307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365
Query: 348 FVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW---------EAF 398
V +L + + CR++T A++ +I + ++T R+ + + F
Sbjct: 366 SVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424
Query: 399 VLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSM 457
I + C+ L L ++ + D+ + I K+ L + + +D G+ HV S C
Sbjct: 425 GAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSGCDS 482
Query: 458 LKELDL 463
L++L++
Sbjct: 483 LRKLEI 488
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-37
Identities = 73/402 (18%), Positives = 132/402 (32%), Gaps = 36/402 (8%)
Query: 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLS-RSRLFTKVGLSSLTVNCRFLTE 129
+ +LDL + + +L S+N+S + + L L C L
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 130 IDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGI--GRIAACCRKLKLLCLKWCI 187
+ L+ + A + A LE L + G A +L CL
Sbjct: 216 LKLN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274
Query: 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLAS 246
+ V C + TL+LSY + L ++ L+ L + I+D GL
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEV 332
Query: 247 VEYSCKSLKALNLSKCQ--------NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC 298
+ +CK L+ L + + ++ GL S+ G L+ ++ +A L
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392
Query: 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
N P + + D +V+ K+LR+
Sbjct: 393 ARNRPNMTRFRLCIIEPKAP----------------DYLTLEPLDIGFGAIVEHCKDLRR 436
Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEV 418
L ++ +T I + L + S + C L +L+I +
Sbjct: 437 LSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493
Query: 419 NDEGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459
D+ L + S+ + SL + CS ++ K +G L
Sbjct: 494 GDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLN 534
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-32
Identities = 72/400 (18%), Positives = 145/400 (36%), Gaps = 36/400 (9%)
Query: 61 ETLSRTSARYPFITQLDLSLCPRA-NDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSS 119
LS Y + L++S + AL + + L+S+ L+R+ L++
Sbjct: 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC--PNLKSLKLNRAVPLE--KLAT 229
Query: 120 LTVNCRFLTEIDLSNGTEMGDAA--AAAIAEAKNLERLW-LARCKLITDLGIGRIAACCR 176
L L E+ T + + L L+ + + + C
Sbjct: 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289
Query: 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVV----KLQYL---- 228
+L L L + V + + +C +++ L + I + L + L+ L
Sbjct: 290 RLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347
Query: 229 -EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY 287
E V+E + + GL SV C L+++ L C+ +++ L ++ + + + L
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCI 406
Query: 288 SFWVSAD----------LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337
+ D + + L+ + + + IG + ++ LS++
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAF 465
Query: 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA 397
G +D + V+ LRKL+I C A + + ++ SL M C VS+ A
Sbjct: 466 A-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL-ANASKLETMRSLWMSSCS-VSFGA 522
Query: 398 FVLIGQQCQYLEELDITEN--EVNDEGLKSISRCSKLSSL 435
L+GQ+ L I E + + R ++
Sbjct: 523 CKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV 562
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 54/305 (17%), Positives = 109/305 (35%), Gaps = 29/305 (9%)
Query: 76 LDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG 135
LS A L V S L ++NLS + + L L C L + + +
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVC--SRLTTLNLSYATV-QSYDLVKLLCQCPKLQRLWVLDY 324
Query: 136 TEMGDAAAAAIAEA-KNLERLWLARCK--------LITDLGIGRIAACCRKLKLLCLKWC 186
+ DA +A K+L L + + +T+ G+ ++ C KL+ + L +C
Sbjct: 325 --IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFC 381
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLP----------ITEKCLPPVVK-LQYLEDLVLEG 235
++T+ + +A + L + + +V+ + L L L G
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441
Query: 236 CHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADL 295
+ D + K ++ L+++ S +G+ ++ G D L++L + + L
Sbjct: 442 L--LTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498
Query: 296 SKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355
++S+ C V+ K +G L + + S V+
Sbjct: 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFI 558
Query: 356 LRKLD 360
R +
Sbjct: 559 YRTVA 563
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 42/246 (17%), Positives = 88/246 (35%), Gaps = 22/246 (8%)
Query: 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF 289
+ + C+ + + ++++ L + + L G
Sbjct: 47 KVFIGNCYAVSPATVIR---RFPKVRSVELKGKPHFADFNLVPDGWGGY----------- 92
Query: 290 WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFV 349
V + ++ L+ I+ + V ++ I + K L LS C G + + L+ +
Sbjct: 93 -VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151
Query: 350 VQSHKELRKLDITCCR--KITYASINSITKTCTSLTSLRMECCK-LVSWEAFVLIGQQCQ 406
+ + L++LD+ ++ ++ T TSL SL + C VS+ A + +C
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211
Query: 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD----EGLKHVGSTCSMLKELD 462
L+ L + ++ + R +L L G + GL S C L+ L
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271
Query: 463 LYRFVT 468
+
Sbjct: 272 GFWDAV 277
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 196 bits (499), Expect = 2e-56
Identities = 86/484 (17%), Positives = 164/484 (33%), Gaps = 71/484 (14%)
Query: 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRK--ILKPLCAETL 63
K+ +++I ++ ++ DP R S SL CR ++ I+S R+ + T
Sbjct: 7 KRCKLSCVATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKIDSETREHVTMALCYTATP 65
Query: 64 SRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVN 123
R S R+P + L L PRA L + ++ ++ N
Sbjct: 66 DRLSRRFPNLRSLKLKGKPRAAMFNL---------------IPENWGGYVTPWVTEISNN 110
Query: 124 CRFLTEIDLSNGTEMGDAAAAAIAEA--KNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
R L + + D +A+A +LE L L +C T G+ I CRK+K L
Sbjct: 111 LRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 182 CLKWCIRVTDLGVELVAL--KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGI 239
++ G L L + L+ I
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT----------------------EFAKI 207
Query: 240 DDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299
L ++ +C+SL ++ + + + VG + L + +
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267
Query: 300 HNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
+ + + + + + + +++L L T+ + ++Q L
Sbjct: 268 F----PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEV 322
Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCK----------LVSWEAFVLIGQQCQYL 408
L+ I + + + C L LR+E LVS + + Q CQ L
Sbjct: 323 LETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380
Query: 409 EELDITENEVNDEGLKSISR-CSKLSSLKLGICSNI-------TDEGLKHVGSTCSMLKE 460
E + + +++ +E L+SI L +L + D G++ + C L+
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440
Query: 461 LDLY 464
Y
Sbjct: 441 FAFY 444
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 1e-40
Identities = 69/442 (15%), Positives = 135/442 (30%), Gaps = 54/442 (12%)
Query: 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEI 130
+ L L C D L + + K+ + S L L + L +
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 131 DLS--NGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKL------- 180
+ ++ IA ++L + + +++ +G + AA +
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257
Query: 181 --------------LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKL 225
LC + + ++ +IR LDL Y TE + K
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317
Query: 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN----------ISHVGLSSLIK 275
LE L I D GL + CK LK L + + + +S GL +L +
Sbjct: 318 PNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC--------PVARSGIKAIGNWH 327
G L+ + + S + L L + +G++++
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 328 GSLKELSLS-KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386
L+ + + G+TD LS++ Q +R + + + + ++ C +L L
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLE 494
Query: 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR---CSKLSSLKLGICSNI 443
M C S A + L L + + G + + + +
Sbjct: 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553
Query: 444 TDEGLKHVGSTCSMLKELDLYR 465
+G + Y
Sbjct: 554 NQQGEIREMEHP---AHILAYY 572
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 2e-21
Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 24/237 (10%)
Query: 71 PFITQLDLSLCPRANDDALSIVSSSSWKLT--------LRSINLSRSRLFTKVGLSSLTV 122
+ +L + S L L + + S + T L S+
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI-TNESLESIGT 400
Query: 123 NCRFLTEIDLSN--------GTEMGDAAAAAIAEAKNLERLWL-ARCKLITDLGIGRIAA 173
+ L + L + + + + K L R R +TDLG+ I
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460
Query: 174 CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVK-LQYLEDLV 232
++ + L + +D G+ + C ++ L++ +E+ + V L L L
Sbjct: 461 YSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519
Query: 233 LEGCH-GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYS 288
++G + L + +++ + + ++ G ++ ++ YS
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE---MEHPAHILAYYS 573
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 9e-12
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 18/139 (12%)
Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
+ + ++++ C T + L + LR L + + ++ +L E
Sbjct: 51 TREHVTMALCYTATPDRL---SRRFPNLRSLKLKGKPRA-------------AMFNLIPE 94
Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI--SRCSKLSSLKLGICSNITDE 446
I + L+ + V+D L + +R L +LKL CS T +
Sbjct: 95 NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154
Query: 447 GLKHVGSTCSMLKELDLYR 465
GL + + C +K L +
Sbjct: 155 GLLSIVTHCRKIKTLLMEE 173
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 58/278 (20%), Positives = 102/278 (36%), Gaps = 14/278 (5%)
Query: 4 KRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHR--KILKPLCAE 61
+ +D L +E++ I L S C+ +Y + S + L
Sbjct: 1 RENFPGVSWDSLPDELLLGIFSCL--CLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN 58
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
+ R + D L+ S ++ ++LS S + L +
Sbjct: 59 LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS---PFRVQHMDLSNSVI-EVSTLHGIL 114
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
C L + L G + D +A+ NL RL L+ C ++ + + + C +L L
Sbjct: 115 SQCSKLQNLSLE-GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173
Query: 182 CLKWCIRVTDLGVE-LVALKCQEIRTLDLSYLP--ITEKCLPPVVK-LQYLEDLVLEGCH 237
L WC T+ V+ VA + I L+LS + + L +V+ L L L
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233
Query: 238 GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275
+ +D L+ L+LS+C +I L L +
Sbjct: 234 MLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE 270
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 55/298 (18%)
Query: 159 RCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC 218
RC +++ + L + + + + +C +++ L L L +++
Sbjct: 76 RCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPI 134
Query: 219 LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278
+ + K L L L GC G + L ++ SC L LNLS C + + + +
Sbjct: 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA--- 191
Query: 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338
H + +
Sbjct: 192 ---------------------HVSETITQLNLSGY------------------------R 206
Query: 339 SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF 398
+ +LS +V+ L LD++ + + L L + C + E
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETL 265
Query: 399 VLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456
+ +G + L+ L + V D L+ + L L++ CS+ T +G+ +
Sbjct: 266 LELG-EIPTLKTLQVF-GIVPDGTLQLLKEA--LPHLQIN-CSHFTTIARPTIGNKKN 318
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 3e-22
Identities = 38/217 (17%), Positives = 86/217 (39%), Gaps = 15/217 (6%)
Query: 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL 120
TL ++ + L L R +D ++ ++ +S L +NLS F++ L +L
Sbjct: 108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNS---NLVRLNLSGCSGFSEFALQTL 163
Query: 121 TVNCRFLTEIDLSNGTEMGDAAAAAIAEA--KNLERLWLARC-KLITDLGIGRIAACCRK 177
+C L E++LS + + + + +L L+ K + + + C
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223
Query: 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKLQYLEDLVLEGC 236
L L L + + + + + ++ L LS I + L + ++ L+ L + G
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282
Query: 237 HGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273
+ D L ++ + L+ C + + + ++
Sbjct: 283 --VPDGTLQLLKEALPHLQI----NCSHFTTIARPTI 313
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 1e-19
Identities = 39/231 (16%), Positives = 91/231 (39%), Gaps = 12/231 (5%)
Query: 244 LASVEYSCKSLKAL----NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299
L V CK L +L + +++ L + G Q +I D
Sbjct: 29 LLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE 88
Query: 300 H-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
H + +Q + + + S + I + L+ LSL ++D ++ + + + L +
Sbjct: 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVR 146
Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF-VLIGQQCQYLEELDITE-- 415
L+++ C + ++ ++ +C+ L L + C + + V + + + +L+++
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206
Query: 416 NEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
+ L ++ R C L L L + ++ + + L+ L L R
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSR 256
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-25
Identities = 79/413 (19%), Positives = 160/413 (38%), Gaps = 58/413 (14%)
Query: 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA----KNLER 154
L ++S+++ L + + L + + L + + +A I+ A L
Sbjct: 3 LDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAE 60
Query: 155 LWLARCKLITDLGIGRIAA----CCRKLKLLCLKWCIRVTDLGVELVA---LKCQEIRTL 207
L L + + D+G+ + K++ L L+ C +T G +++ ++ L
Sbjct: 61 LNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQEL 118
Query: 208 DLSYLPITEKCLPPVVKLQ-----YLEDLVLEGCHGIDDDG---LASVEYSCKSLKALNL 259
LS + + L + + LE L LE C + LASV + K L +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTV 177
Query: 260 SKCQNISHVGLSSLIKG----ADYLQQLILAY---SFWVSADLSKCLHNFPMLQSIKFED 312
S I+ G+ L +G L+ L L + DL + + L+ +
Sbjct: 178 SNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 313 CPVARSGIKAIG----NWHGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKLDITCCR 365
+ G+ + + L+ L + +C G+T + +L V+++ + L++L +
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN- 294
Query: 366 KITYASINSI----TKTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEV 418
++ + + L SL ++ C + Q ++L EL I+ N +
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLELQISNNRL 353
Query: 419 NDEGLKSISR-----CSKLSSLKLGICSNITDEGLKHVGS---TCSMLKELDL 463
D G++ + + S L L L C +++D + + L+ELDL
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDL 405
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 83/430 (19%), Positives = 155/430 (36%), Gaps = 59/430 (13%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL-----TVNCRFL 127
+ L C I S+ L +NL + L VG+ + T +C+ +
Sbjct: 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCK-I 87
Query: 128 TEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAA----CCRKLK 179
++ L N + A ++ L+ L L+ + D G+ + +L+
Sbjct: 88 QKLSLQN-CCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLE 145
Query: 180 LLCLKWCIRVTDLGVELVAL---KCQEIRTLDLSYLPITE---KCLPPVVKLQY--LEDL 231
L L++C ++ E +A + + L +S I E + L +K LE L
Sbjct: 146 KLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 232 VLEGCHGIDDDG---LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY----LQQLI 284
LE C G+ D L + S SL+ L L + + VG++ L G + L+ L
Sbjct: 205 KLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW 262
Query: 285 LAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIG----NWHGSLKELSLSK 337
+ + DL + L L+ + + G + + L+ L +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322
Query: 338 CSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASINSI----TKTCTSLTSLRMECC 390
CS T S V+ ++ L +L I+ ++ A + + + + L L + C
Sbjct: 323 CS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380
Query: 391 KLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISR-----CSKLSSLKLGICSNI 443
+ L L ELD++ N + D G+ + L L L
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI-YW 439
Query: 444 TDEGLKHVGS 453
++E + +
Sbjct: 440 SEEMEDRLQA 449
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 32/239 (13%)
Query: 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-----SFWVSADLSKCLHNFPMLQ 306
+++L++ + +S + L+ Q + L + D+S L P L
Sbjct: 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARC--KDISSALRVNPALA 59
Query: 307 SIKFEDCPVARSGIKAIG----NWHGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKL 359
+ + G+ + +++LSL C +T LS +++ L++L
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQEL 118
Query: 360 DITCCRKITYASINSIT----KTCTSLTSLRMECCKL--VSWEAFVLIGQQCQYLEELDI 413
++ + A + + L L++E C L S E + + +EL +
Sbjct: 119 HLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177
Query: 414 TENEVNDEGLKSISRC-----SKLSSLKLGICSNITDEGLKHVGS---TCSMLKELDLY 464
+ N++N+ G++ + + +L +LKL C +T + + + + + L+EL L
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALG 235
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 30/210 (14%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL-----TVNCRFL 127
+ L + C + K +L+ ++L+ + L G L C+ L
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQ-L 315
Query: 128 TEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAA----CCRKLK 179
+ + + A + + + L L ++ + + D G+ + L+
Sbjct: 316 ESLWVKS-CSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLR 373
Query: 180 LLCLKWCIRVTDLGVELVA---LKCQEIRTLDLSYLPITE---KCLPPVVKLQY--LEDL 231
+L L C V+D +A L +R LDLS + + L V+ LE L
Sbjct: 374 VLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 232 VLEGCHGIDDDG---LASVEYSCKSLKALN 258
VL ++ L ++E SL+ ++
Sbjct: 433 VLYDI-YWSEEMEDRLQALEKDKPSLRVIS 461
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 85/385 (22%)
Query: 116 GLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA-----KNLERLWLARCKLITDLGIGR 170
+ T +T +DLS + + + +A ++ L L+ +
Sbjct: 13 PVEEFTSIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDE 70
Query: 171 IAA----CCRKLKLLCLKWCIRVTDLGVELVA----LKCQEIRTLDLSYLPITEKCLPPV 222
+ + L L ++ + + I LDL + + K
Sbjct: 71 LVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129
Query: 223 VKL-----QYLEDLVLEGCHGIDDDG---LASV-EYSCKSLKALNLSKCQNISHVGLSSL 273
+ + L L G + L + ++ +LNL ++
Sbjct: 130 KQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNC--- 184
Query: 274 IKGADYLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIG----NWHG 328
A+L+K L + P + S+ + + +
Sbjct: 185 -------------------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225
Query: 329 SLKELSLSKC--SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386
+ L+L G + E L + S K L+ + + + +++K
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI------VKNMSK--------- 270
Query: 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR-----CSKLSSLKLGICS 441
E CK + AF Q + +D E++ IS K L
Sbjct: 271 -EQCKALG-AAF----PNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQC 324
Query: 442 NITDEGLKH---VGSTCSMLKELDL 463
I + + + L+E
Sbjct: 325 LIFAQKHQTNIEDLNIPDELRESIQ 349
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 56/409 (13%), Positives = 110/409 (26%), Gaps = 95/409 (23%)
Query: 76 LDLSLCPRANDDALSIVSSSSWKLT---------LRSINLSRSRLFTKVGLSSLTVNCRF 126
L CP N DAL + KL ++ + S V
Sbjct: 15 LAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVL-SS 73
Query: 127 LTEIDLSNGTEMGDAAAAAIAEA-----KNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
L +++L+ G M +A L+ + LA C+ + G+ + + + L
Sbjct: 74 LRQLNLA-GVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKL 131
Query: 182 CLKWCIRVTDLGVELVA--LKCQE--IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH 237
L+ + + + L + I TL LS P+T V +
Sbjct: 132 GLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG----VAV------------ 174
Query: 238 GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK 297
L S+ L+L + GL L +
Sbjct: 175 ------LMEGLAGNTSVTHLSLLHTG-LGDEGLELL----------------------AA 205
Query: 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNW---HGSLKELSLSKCSGVTDE------ELSF 348
L LQ + + A+ H SL+ L L ++ E +L
Sbjct: 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGG 264
Query: 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408
+ + ++ +++ +L S Q+ L
Sbjct: 265 AAEGGARVVVSLTEGTA-VSEYWSVILSEVQRNLNSWDR------------ARVQRHLEL 311
Query: 409 EELDITENEVNDEGLKSISRCSK----LSSLKLGICSNITDEGLKHVGS 453
D+ ++ ++ + + +L + +
Sbjct: 312 LLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG-SSGSPSGSWSHP 359
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 38/263 (14%), Positives = 76/263 (28%), Gaps = 51/263 (19%)
Query: 225 LQYLEDLVLEGCHGIDDDG---LASV-EYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280
L L L L G + +A+V +L +NL+ CQ + GL +L+
Sbjct: 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRA 128
Query: 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG----NWHGSLKELSLS 336
++L L K + + + L LS
Sbjct: 129 RKL----------GLQLN----------SLGP-----EACKDLRDLLLHDQCQITTLRLS 163
Query: 337 KCSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECC 390
+T L + + + L + + + + L L +
Sbjct: 164 NNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN 221
Query: 391 KL--VSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS------LKLGICSN 442
+ A ++ LE L + NE++ EG + + + + L +
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281
Query: 443 ITDEGLKHVGSTCSMLKELDLYR 465
+++ + L D R
Sbjct: 282 VSEYWSVILSEVQRNLNSWDRAR 304
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 70/415 (16%), Positives = 126/415 (30%), Gaps = 110/415 (26%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDL 132
I L L +D S+ + L + EI L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAV------LL--------------------EDDSVKEIVL 39
Query: 133 SNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAACCRK-LKLLCLKWCI 187
S G +G AA ++E K+LE + D+ GR+ + L+LL
Sbjct: 40 S-GNTIGTEAARWLSENIASKKDLEIAEFS------DIFTGRVKDEIPEALRLLLQ---- 88
Query: 188 RVTDLGVELVALK-CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLAS 246
AL C ++ T+ LS + L
Sbjct: 89 ----------ALLKCPKLHTVRLSDNAFGPTAQ----------------------EPLID 116
Query: 247 VEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306
L+ L L + + + A LQ+L + K N P L+
Sbjct: 117 FLSKHTPLEHLYLHNNG-LGPQAGAKI---ARALQELAVN----------KKAKNAPPLR 162
Query: 307 SIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDE----ELSFVVQSHKELRKL 359
SI + +K H L + + + G+ E L + +EL+ L
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVL 221
Query: 360 DITCCRKITYASINSIT---KTCTSLTSLRMECCKL----VSWEAFVLIGQQCQYLEELD 412
D+ T+ +++ K+ +L L + C L + + L+ L
Sbjct: 222 DLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280
Query: 413 ITENEVNDEGLKSISRC--SKLSSLK-LGICSN-ITDEGLKHVGSTCSMLKELDL 463
+ NE+ + ++++ K+ L L + N ++E V +
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED-DVVDEIREVFSTRGR 334
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 55/392 (14%), Positives = 108/392 (27%), Gaps = 92/392 (23%)
Query: 99 LTLRSINLSRSRLFTKVGLSSLT---VNCRFLTEIDLSNGTEMGDAAAAAIAEA----KN 151
++ +L + T S+ + + EI LS G +G AA ++E K+
Sbjct: 4 FSIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLS-GNTIGTEAARWLSENIASKKD 61
Query: 152 LERLWLARCKLITDLGIGRIAAC---------CRKLKLLCLKWCIRVTDLGVELVA---L 199
LE + + A C KL + L E +
Sbjct: 62 LEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLS 119
Query: 200 KCQEIRTLDLSYLPITEKC-------------LPPVVKLQYLEDLVLEGCHGIDDDG--- 243
K + L L + + L ++ +++
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKE 178
Query: 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303
A S + L + + + I G+ L+ L+ C
Sbjct: 179 WAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEG-----------------LAYC----Q 216
Query: 304 MLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCS----GVTDEELSFVVQSHKEL 356
L+ + +D G A+ +L+EL L+ C G +F + L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416
+ L + I ++ ++ I ++ L L++ N
Sbjct: 277 QTLRLQYNE-IELDAVRTLKTV----------------------IDEKMPDLLFLELNGN 313
Query: 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGL 448
++E S+ G + D
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 69/390 (17%), Positives = 131/390 (33%), Gaps = 77/390 (19%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLAR 159
TL ++ +++F L+ L + +++ E +++ +L +A
Sbjct: 4 TLATLPAPINQIFPDADLAEGIRAV--LQKASVTD--------VVTQEELESITKLVVAG 53
Query: 160 CKLITDL-GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC 218
K + + GI L+ L L ++TD+ L L ++ L + IT+
Sbjct: 54 EK-VASIQGIEY----LTNLEYLNLNGN-QITDIS-PLSNLV--KLTNLYIGTNKITD-- 102
Query: 219 LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHV-GLSSLIKGA 277
+ + L L +L L + D LA+ + +LNL N+S + LS++
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLAN----LTKMYSLNLGANHNLSDLSPLSNMTG-- 156
Query: 278 DYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335
L L + S + + N L S+ + I + + SL +
Sbjct: 157 --LNYLTVTES-----KVKDVTPIANLTDLYSLSLNYNQI--EDISPLASLT-SLHYFTA 206
Query: 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKIT--------------YASINSITK---- 377
++ + L L I + IT N I+
Sbjct: 207 YVNQITDITPVA----NMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDINAV 261
Query: 378 -TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436
T L L + ++ L L + N++ +E ++ I + L++L
Sbjct: 262 KDLTKLKMLNVGSNQISDISVL----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317
Query: 437 LGICSN-ITD-EGLKHVGSTCSMLKELDLY 464
L N ITD L S + D
Sbjct: 318 LS--QNHITDIRPLAS----LSKMDSADFA 341
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 56/339 (16%), Positives = 119/339 (35%), Gaps = 63/339 (18%)
Query: 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDL-GVELVALKCQEIRTLD 208
R L + + + + L + +V + G+E + L+
Sbjct: 22 AEGIRAVLQKASVTDVVTQEE----LESITKLVVAGE-KVASIQGIE----YLTNLEYLN 72
Query: 209 LSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD----DGLASVEY--------------- 249
L+ IT+ + P+ L L +L + I D L ++
Sbjct: 73 LNGNQITD--ISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISDISPLA 129
Query: 250 SCKSLKALNLSKCQNISHV-GLSSLIKGADYLQQLILAYSFWVSADLSK--CLHNFPMLQ 306
+ + +LNL N+S + LS++ L L + S + + N L
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTG----LNYLTVTES-----KVKDVTPIANLTDLY 180
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
S+ + I + + SL + ++ + L L I +
Sbjct: 181 SLSLNYNQI--EDISPLASLT-SLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNK- 232
Query: 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426
IT ++ + + LT L + ++ A + L+ L++ N+++D + +
Sbjct: 233 IT--DLSPLAN-LSQLTWLEIGTNQISDINAV----KDLTKLKMLNVGSNQISD--ISVL 283
Query: 427 SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
+ S+L+SL L + +E ++ +G + L L L +
Sbjct: 284 NNLSQLNSLFLNNN-QLGNEDMEVIGG-LTNLTTLFLSQ 320
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-11
Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 55/172 (31%)
Query: 198 ALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGL---ASVEYSCKSL 254
L +I+ +D + I + LQY+E + L CH I+D L + +E KS+
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP 314
+ + C N++ G+ LH+F
Sbjct: 117 LEMEIISCGNVTDKGI--------------------------IALHHFR----------- 139
Query: 315 VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
+LK L LS GV ++E V L L++ K
Sbjct: 140 --------------NLKYLFLSDLPGVKEKEKI-VQAFKTSLPSLELKLDLK 176
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 4e-10
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 7/125 (5%)
Query: 343 DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG 402
L +++ +D T I + + + +R+ C + +
Sbjct: 50 YNHLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLS 107
Query: 403 Q---QCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458
Q + + E++I V D+G+ ++ L L L + ++ + + L
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQ-AFKTSL 166
Query: 459 KELDL 463
L+L
Sbjct: 167 PSLEL 171
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-10
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 83 RANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142
+ + + L +K+ +I+ + S + + +++ +I L + D
Sbjct: 47 QKDYNHLPTGPLDKYKIQ--AIDATDSCIMSIG--FDHMEGLQYVEKIRLCKCHYIEDGC 102
Query: 143 AAAIAEAKN----LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVA 198
+++ +N + + + C +TD GI + R LK L L V + + A
Sbjct: 103 LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKYLFLSDLPGVKEKEKIVQA 161
Query: 199 LK 200
K
Sbjct: 162 FK 163
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-09
Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 24/123 (19%)
Query: 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLS 210
++ + I +G + ++ + L C + D +E ++ ++
Sbjct: 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKS---- 115
Query: 211 YLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGL 270
+ ++ + C + D G+ ++ + ++LK L LS +
Sbjct: 116 -----------------MLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEK 157
Query: 271 SSL 273
Sbjct: 158 IVQ 160
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM---LK 459
++ +D T++ + G + + ++L C I D L+ + ++ +
Sbjct: 58 LDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSML 117
Query: 460 ELDLYR 465
E+++
Sbjct: 118 EMEIIS 123
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKLDI 361
+Q+I D + G + ++++ L KC + D LS + K + +++I
Sbjct: 63 IQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVS 394
C +T I ++ +L L + V
Sbjct: 122 ISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVK 153
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGL---SS 119
L I +D + + + + I L + L S
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQY----VEKIRLCKCHYIEDGCLERLSQ 108
Query: 120 LTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIA--ACCRK 177
L + + E+++ + + D A+ +NL+ L+L+ + + A
Sbjct: 109 LENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPS 168
Query: 178 LKL-LCLK 184
L+L L LK
Sbjct: 169 LELKLDLK 176
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 73/366 (19%), Positives = 138/366 (37%), Gaps = 54/366 (14%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC 160
L ++ + V + L +T + +G + + NL ++ +
Sbjct: 26 KMKTVLGKTNVTDTVSQTDLD----QVTTLQADR---LGIKSIDGVEYLNNLTQINFSNN 78
Query: 161 KLITDL-GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCL 219
+ +TD+ + KL + + ++ D+ L L + L L IT+ +
Sbjct: 79 Q-LTDITPLKN----LTKLVDILMNNN-QIADI-TPLANLT--NLTGLTLFNNQITD--I 127
Query: 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279
P+ L L L L D L+ SL+ L+ Q L++L
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALS----GLTSLQQLSFG-NQVTDLKPLANLTT---- 178
Query: 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS 339
L++L + S +D+S L L+S+ + + S I +G +L ELSL+
Sbjct: 179 LERLDI--SSNKVSDISV-LAKLTNLESLIATNNQI--SDITPLGILT-NLDELSLNGNQ 232
Query: 340 GVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFV 399
L+ S L LD+ +I+ ++ ++ T LT L++ ++ +
Sbjct: 233 LKDIGTLA----SLTNLTDLDLANN-QIS--NLAPLSG-LTKLTELKLGANQISNISPL- 283
Query: 400 LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD-EGLKHVGSTCSML 458
L L++ EN++ D + IS L+ L L NI+D + + L
Sbjct: 284 ---AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN-NISDISPVSS----LTKL 333
Query: 459 KELDLY 464
+ L Y
Sbjct: 334 QRLFFY 339
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 67/368 (18%), Positives = 141/368 (38%), Gaps = 56/368 (15%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLAR 159
L + L +++ L +LT L ++LS+ + D +A ++ +L++L
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLT----NLNRLELSS-NTISDISA--LSGLTSLQQLSF-G 164
Query: 160 CKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV--ELVALKCQEIRTLDLSYLPITEK 217
++ + L+ L + +V+D+ V +L L+ +L + I++
Sbjct: 165 NQVTDLKPLAN----LTTLERLDISSN-KVSDISVLAKLTNLE-----SLIATNNQISD- 213
Query: 218 CLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA 277
+ P+ L L++L L G D LAS +L L+L+ Q + LS L K
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTK-- 266
Query: 278 DYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335
L +L L + +S L L +++ + + I I N +L L+L
Sbjct: 267 --LTELKLGAN-----QISNISPLAGLTALTNLELNENQL--EDISPISNLK-NLTYLTL 316
Query: 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW 395
+ +S S +L++L K++ ++S+ T++ L ++
Sbjct: 317 YFNNISDISPVS----SLTKLQRLFFYNN-KVS--DVSSLAN-LTNINWLSAGHNQISDL 368
Query: 396 EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTC 455
+ +L + + + + + S +++K + I + GS
Sbjct: 369 TPL----ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGS-- 422
Query: 456 SMLKELDL 463
E D+
Sbjct: 423 --YTEPDI 428
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 48/273 (17%), Positives = 86/273 (31%), Gaps = 51/273 (18%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
E L +T+ L + L + DG+ +L +N
Sbjct: 22 ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVEY----LNNLTQINF 75
Query: 260 SKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC-------LHNFPMLQSIKFED 312
S Q L +L K L + ++ L N L + +
Sbjct: 76 SNNQLTDITPLKNLTK----LVDI----------LMNNNQIADITPLANLTNLTGLTLFN 121
Query: 313 CPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI 372
+ + I + N +L L LS + LS + L++L ++T +
Sbjct: 122 NQI--TDIDPLKNLT-NLNRLELSSNTISDISALSGL----TSLQQLSF--GNQVT--DL 170
Query: 373 NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432
+ T+L L + K+ + LE L T N+++D + + + L
Sbjct: 171 KPLAN-LTTLERLDISSNKVSDISVL----AKLTNLESLIATNNQISD--ITPLGILTNL 223
Query: 433 SSLKLGICSNITD-EGLKHVGSTCSMLKELDLY 464
L L + D L + L +LDL
Sbjct: 224 DELSLNGN-QLKDIGTLAS----LTNLTDLDLA 251
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 60/369 (16%), Positives = 113/369 (30%), Gaps = 67/369 (18%)
Query: 100 TLRSINLSRSRLFTKVGLSSLT----VNCRF--LTEIDLSNGTEMGDAAAA-------AI 146
TL S++ S + G+ LT + C +T +DLS T + A +
Sbjct: 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDV 102
Query: 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
L L KL T L + + L L +T++ V ++
Sbjct: 103 TPLTKLTYLNCDTNKL-TKLDVSQ----NPLLTYLNCARN-TLTEIDVS----HNTQLTE 152
Query: 207 LDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS-CKSLKALNLSKCQNI 265
LD V L L + ++ S K L LN I
Sbjct: 153 LDCHLNKKIT--KLDVTPQTQLTTLDCSFNK------ITELDVSQNKLLNRLNCDTNN-I 203
Query: 266 SHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI-----KFEDCPVAR-SG 319
+ + L+ I+ L L + + D++ L + V+ S
Sbjct: 204 TKLDLNQNIQ----LTFLDCSSNKLTEIDVT----PLTQLTYFDCSVNPLTELDVSTLSK 255
Query: 320 IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT--YASINSITK 377
+ + L E+ L+ + + + +++++LD+T ++ IT+
Sbjct: 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAE----GCRKIKELDVTHNTQLYLLDCQAAGITE 311
Query: 378 ----TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433
L L + +L L L+ L ++ S K+
Sbjct: 312 LDLSQNPKLVYLYLNNTELTE-----LDVSHNTKLKSLSCVNAH-----IQDFSSVGKIP 361
Query: 434 SLKLGICSN 442
+L +
Sbjct: 362 ALNNNFEAE 370
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 4e-08
Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 36/242 (14%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
E +L +T+ +L ++ ++ G+ ++ L L
Sbjct: 19 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVTKLFL 72
Query: 260 SKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVAR 317
+ + L++L L L L + + L + L+S+ E +
Sbjct: 73 NGNKLTDIKPLTNLKN----LGWLFLDEN-----KIKDLSSLKDLKKLKSLSLEHNGI-- 121
Query: 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT- 376
S I + + L+ L L LS +L L + + I+ I
Sbjct: 122 SDINGLVHLP-QLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQ------ISDIVP 170
Query: 377 -KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435
T L +L + + A + L+ L++ E ++ + S +++
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Query: 436 KL 437
K
Sbjct: 227 KN 228
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 5e-06
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 36/218 (16%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWL 157
++ I + S + + G+ L +T++ L+ T++ + KNL L+L
Sbjct: 44 SIDQIIANNSDIKSVQGIQYLP----NVTKLFLNGNKLTDI-----KPLTNLKNLGWLFL 94
Query: 158 ARCKLITDL-GIGRIAACCRKLKLLCLKWCIRVTDL-GVELVALKCQEIRTLDLSYLPIT 215
K I DL + +KLK L L+ ++D+ G+ ++ +L L IT
Sbjct: 95 DENK-IKDLSSL----KDLKKLKSLSLEHN-GISDINGLV----HLPQLESLYLGNNKIT 144
Query: 216 EKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHV-GLSSLI 274
+ + + +L L+ L LE D LA L+ L LSK IS + L+ L
Sbjct: 145 D--ITVLSRLTKLDTLSLEDNQISDIVPLA----GLTKLQNLYLSKNH-ISDLRALAGLK 197
Query: 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFED 312
L L L ++ ++ N + ++K D
Sbjct: 198 N----LDVLELFSQECLNKPINH-QSNLVVPNTVKNTD 230
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 65/400 (16%), Positives = 138/400 (34%), Gaps = 25/400 (6%)
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSS-WKLT-LRSINLSRSRLFTKVGLSSLTVNCR 125
+R +T LDL+ C + + + L ++ L+ + L + ++L+ +
Sbjct: 54 SRLINLTFLDLTRC------QIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALS-GPK 105
Query: 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKW 185
L + T + + K LE L+L I+ + + + KLK+L +
Sbjct: 106 ALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPT-EKLKVLDFQN 162
Query: 186 CIRVTDLGVE-LVALKCQEIRTLDLSYLPITEKCLPPVV-KLQYLEDLVLEGCHGIDDDG 243
+ L E + +L+ +L+L+ I + P + L G +
Sbjct: 163 N-AIHYLSKEDMSSLQQATNLSLNLNGNDIA--GIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303
+ +SL + ++ + L + S H F
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFS 278
Query: 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
LQ + + S + + +LK+L LS ++S + L L I
Sbjct: 279 GLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKG 334
Query: 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL 423
K + + +L L + + + + L + +L+ L+++ NE
Sbjct: 335 NTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 424 KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
++ C +L L L + + + + +LK L+L
Sbjct: 394 EAFKECPQLELLDLA-FTRLKVKDAQSPFQNLHLLKVLNL 432
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 54/371 (14%), Positives = 121/371 (32%), Gaps = 26/371 (7%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLER--LWLA 158
L S+ L + + + + L L +D N + + ++ + L L
Sbjct: 131 LESLYLGSNHI-SSIKLPKGF-PTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLN 187
Query: 159 RCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-- 216
+ I A + L + + L Q + + +
Sbjct: 188 GNDIAG---IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 217 KCLPPVVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI 274
+ + +E + L+ + I + L+ L+L+ ++S L S +
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHC----FSGLQELDLTAT-HLSE--LPSGL 297
Query: 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334
G L++L+L+ + NFP L + + +L+EL
Sbjct: 298 VGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS 394
LS T + + +++ L+ L+++ + + K C L L + +L
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF-KECPQLELLDLAFTRLKV 414
Query: 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG-- 452
+A L+ L+++ + ++ + L L L ++ ++
Sbjct: 415 KDAQSPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ-GNHFPKGNIQKTNSL 472
Query: 453 STCSMLKELDL 463
T L+ L L
Sbjct: 473 QTLGRLEILVL 483
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 41/243 (16%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 201 CQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKAL 257
++ LDL+ ++E LP +V L L+ LVL + ++ SL L
Sbjct: 277 FSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASN----FPSLTHL 330
Query: 258 NLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHNFPMLQSIKFEDCPVA 316
++ +G L + + L++L L++ S + L N LQS+
Sbjct: 331 SIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 317 RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376
+A L+ L L+ + ++ Q+ L+ L+++ + S +
Sbjct: 390 SLKTEAFKECP-QLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSL-LDI-SSEQLF 445
Query: 377 KTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSS 434
+L L ++ Q LE L ++ +++ + + ++
Sbjct: 446 DGLPALQHLNLQGNHF-PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 435 LKL 437
+ L
Sbjct: 505 VDL 507
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 48/291 (16%), Positives = 87/291 (29%), Gaps = 44/291 (15%)
Query: 204 IRTLDLSYLPITEKCLPPVV--KLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNL 259
L+ S+ + + +L L L L C I +D S L L L
Sbjct: 35 TECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTF----QSQHRLDTLVL 88
Query: 260 SKCQ--NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR 317
+ ++ LS L+ L + S D LHN L+S+ ++
Sbjct: 89 TANPLIFMAETALSGPKA----LKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISS 143
Query: 318 SGIKAIGNWHGSLKELSLSKC--SGVTDEELSFVVQSHK--------------------- 354
+ LK L ++ E++S + Q+
Sbjct: 144 IKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202
Query: 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414
+ L+ + + T SL E V G +E +++
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262
Query: 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
++ + + S L L L ++++ L S LK+L L
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSA 310
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 40/256 (15%), Positives = 84/256 (32%), Gaps = 32/256 (12%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
E +L +T+ +L ++ ++ G+ ++ L L
Sbjct: 22 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVTKLFL 75
Query: 260 SKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVAR 317
+ + L++L L L L + + L + L+S+ E +
Sbjct: 76 NGNKLTDIKPLANLKN----LGWLFLDEN-----KVKDLSSLKDLKKLKSLSLEHNGI-- 124
Query: 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377
S I + + L+ L L LS +L L + +I+ I +
Sbjct: 125 SDINGLVH-LPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDN-QIS--DIVPLAG 176
Query: 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437
T L +L + + A + L+ L++ E ++ + S +++K
Sbjct: 177 -LTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 438 GICSNITDEGLKHVGS 453
S +T E + G
Sbjct: 232 TDGSLVTPEIISDDGD 247
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 2e-07
Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 19/194 (9%)
Query: 288 SFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL-----SLSKCSGVT 342
++ + + F + + + D I I L + L+
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWI--EQVDLSPVLDAMPLLNNLKIKG 181
Query: 343 DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME-------CCKLVSW 395
LS + L+ L+I + + +L L + ++
Sbjct: 182 TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241
Query: 396 EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK-LGICSN-ITDEGLKHVGS 453
+ + L+ L I + E + ++ L L+ + I + +TDEG + +
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301
Query: 454 TC---SMLKELDLY 464
LK +++
Sbjct: 302 HVDKIKHLKFINMK 315
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 1e-05
Identities = 32/229 (13%), Positives = 72/229 (31%), Gaps = 16/229 (6%)
Query: 214 ITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ----NISHVG 269
+ +K LP + ++ DG+ + + L IS +
Sbjct: 101 LKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE 160
Query: 270 LSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG- 328
L D + L + +LS P L+S++ + S ++ I
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKG-TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP 219
Query: 329 SLKELSLSKCS-------GVTDEELSFVVQSHKELRKLDITCCRKITY-ASINSITKTCT 380
+L++L L + F L+ L I + + +
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279
Query: 381 SLTSLRMECCKL--VSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427
L ++ + L + + ++L+ +++ N ++DE K +
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 1e-04
Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
Query: 67 SARYPFITQLDLSLC-----PRANDDALSIVSSSSWKLTLRSINLSRSRLFTKV--GLSS 119
+ P + +L L + + + + S L+ + + + V
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274
Query: 120 LTVNCRFLTEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAACC 175
+ + L +D+S G + D A + + K+L+ + + ++D +
Sbjct: 275 SDILPQ-LETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL 331
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 69/392 (17%), Positives = 133/392 (33%), Gaps = 53/392 (13%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSN----GTEMGDAAAAAIAEAKNLERL 155
+ +NL+ ++L ++ ++ T LT +D+ E + L+ L
Sbjct: 26 NITVLNLTHNQL-RRLPAANFT-RYSQLTSLDVGFNTISKLE-----PELCQKLPMLKVL 78
Query: 156 WLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPIT 215
L +L + L + A C L L L + + K + + TLDLS+ ++
Sbjct: 79 NLQHNEL-SQL-SDKTFAFCTNLTELHLMSN-SIQKIKNNPFV-KQKNLITLDLSHNGLS 134
Query: 216 EKCLPPVVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273
L V+L+ L++L+L + + L + SLK L LS Q +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQ------IKEF 186
Query: 274 IKGA----DYLQQLILAYSFWVSADLSKCLHNFPM--LQSIKFEDCPVARSGIKAIGNWH 327
G L L L + K ++++ + ++ +
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 328 G-SLKELSLSKC--SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384
+L L LS + V ++ + +L + I + +S+ ++
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFA----WLPQLEYFFLEYN-NIQHLFSHSLHG-LFNVRY 300
Query: 385 LRM---------ECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435
L + L + F Q + LE L++ +N++ + L L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSF--QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 436 KLG--ICSNITDEGLKHVGSTCSMLKELDLYR 465
L S T V S L L+L +
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 58/379 (15%), Positives = 117/379 (30%), Gaps = 49/379 (12%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC 160
L ++LS + L VG S L L + + ++ N+ L L R
Sbjct: 250 LTMLDLSYNNL-NVVGNDSFA-WLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 161 KLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLP 220
+ + + K+ +W + + L++ I +
Sbjct: 307 FTKQSISLASL----PKIDDFSFQWL---------------KCLEHLNMEDNDIPG--IK 345
Query: 221 PVV--KLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKG 276
+ L L+ L L V + L LNL+K + +S +
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK------ISKIESD 399
Query: 277 A----DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKE 332
A +L+ L L + + + I + + SL+
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQR 458
Query: 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKL 392
L L + + + Q + L LD++ I + + + L L ++ L
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEG-LEKLEILDLQHNNL 516
Query: 393 VSWEAFVLIG------QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446
G + +L L++ N ++ ++ +L + LG +N+
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNTL 575
Query: 447 GLKHVGSTCSMLKELDLYR 465
V + LK L+L +
Sbjct: 576 -PASVFNNQVSLKSLNLQK 593
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 26/164 (15%)
Query: 127 LTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDL-GIGRIAACCRKLKLLCLKW 185
LT I L+N + D I A N++ L + T+ I + L+ L +
Sbjct: 46 LTYITLAN-INVTDLTG--IEYAHNIKDLTINNIH-ATNYNPI----SGLSNLERLRIMG 97
Query: 186 CIRVTDLGVE-LVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD-DG 243
VT + L L + LD+S+ + L + L + + L I D
Sbjct: 98 K-DVTSDKIPNLSGLT--SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154
Query: 244 LASVEYSCKSLKALNLSKCQ--NISHVGLSSLIKGADYLQQLIL 285
L + LK+LN+ + G+ K L QL
Sbjct: 155 LK----TLPELKSLNIQFDGVHDYR--GIEDFPK----LNQLYA 188
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
SL ++L+ VTD L+ + + ++ L I T + N I ++L LR+
Sbjct: 45 SLTYITLANI-NVTD--LTGI-EYAHNIKDLTINNI-HAT--NYNPI-SGLSNLERLRIM 96
Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD-EG 447
+ S + L L LDI+ + +D L I+ K++S+ L ITD
Sbjct: 97 GKDVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154
Query: 448 LKHVGSTCSMLKELDLY 464
LK LK L++
Sbjct: 155 LKT----LPELKSLNIQ 167
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 252 KSLKALNLSKCQNISHV-GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310
SL + L+ ++ + G+ ++ L + + + + + L+ ++
Sbjct: 44 NSLTYITLANIN-VTDLTGIEYAHN----IKDLTINNI-HAT-NYN-PISGLSNLERLRI 95
Query: 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYA 370
V I + SL L +S D L+ + + ++ +D++ IT
Sbjct: 96 MGKDVTSDKIPNLSGLT-SLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAIT-- 150
Query: 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421
I + L SL ++ + + + L +L + +
Sbjct: 151 DIMPLKT-LPELKSLNIQFDGVHDYRGI----EDFPKLNQLYAFSQTIGGK 196
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 38/160 (23%)
Query: 117 LSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIA 172
L + N L E++L+N + A AEA +++ + + D +A
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALA 86
Query: 173 ACCRK---LKLLCLKWCIRVTDLGVELVA--LKCQE-IRTLDLSYLPITEKCLPPVVKLQ 226
+ LK L ++ ++ G+ + L+ + L +
Sbjct: 87 EMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRID---------------- 129
Query: 227 YLEDLVLEGCHGIDDDG---LASVEYSCKSLKALNLSKCQ 263
+ ++ +A++ +L Q
Sbjct: 130 -------NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 64/448 (14%), Positives = 127/448 (28%), Gaps = 72/448 (16%)
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSS-WKLT-LRSINLSRSRLFTKVGLSSLTVNCR 125
+ + + LDLS C + + + L L ++ L+ + + S +
Sbjct: 53 SNFSELQWLDLSRC------EIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFS-GLT 104
Query: 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL---- 181
L + T++ + I + L++L +A I + + L +
Sbjct: 105 SLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSY 162
Query: 182 ---------------CLKWCIRVTDLG------VELVALKCQEIRTLDLSYLPITEKCLP 220
D+ ++ A + ++ L L + +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222
Query: 221 PVVK-LQYLEDLVLEGCHGIDDDGLASVEYSC----KSLKALNLSKCQNISHVGLSSLIK 275
++ L L L D+ L E S +
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282
Query: 276 GADYLQQLILAY------------SFWVSADLSKCL------HNFPMLQSIKFEDCPVAR 317
+ + LA W S + +C + P L+S+
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK--- 339
Query: 318 SGIKAIGNWHG--SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI 375
SL L LS+ + S+ LR LD++ +++
Sbjct: 340 --GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAI--IMSAN 394
Query: 376 TKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435
L L + L F + L LDI+ + + L++L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 436 KLGICSNITDEGLKHVGSTCSMLKELDL 463
K+ ++ D L +V + + L LDL
Sbjct: 454 KMA-GNSFKDNTLSNVFANTTNLTFLDL 480
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 66/383 (17%), Positives = 109/383 (28%), Gaps = 36/383 (9%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLT-LRSINLSRSRLF-----TKVGLSSLTVNCRF 126
+ +L L N ++ +I+ + L L L S + C
Sbjct: 206 LHELTLR----GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 127 LTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWC 186
+ T N+ + LA I L K + L + C
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDV---PKHFKWQSLSIIRC 317
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLAS 246
+ L +++L L+ + V L L L L +
Sbjct: 318 -----QLKQFPTLDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSY 370
Query: 247 VEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306
+ SL+ L+LS I +S+ G + LQ L +S + L
Sbjct: 371 SDLGTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
+ SL L ++ S D LS V + L LD++ C +
Sbjct: 428 YLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-Q 484
Query: 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426
+ S T L L M L+ ++ Q L LD + N +
Sbjct: 485 LEQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHY--NQLYSLSTLDCSFNRIETSKGILQ 541
Query: 427 SRCSKLSSLKLG------ICSNI 443
L+ L IC +
Sbjct: 542 HFPKSLAFFNLTNNSVACICEHQ 564
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 56/384 (14%), Positives = 117/384 (30%), Gaps = 93/384 (24%)
Query: 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLA 158
R + +SR R L +N L+ + +LE L +
Sbjct: 55 GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP---------------ELPPHLESLVAS 99
Query: 159 RCKLITDL--GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE 216
L T+L + L + ++DL L L +S + +
Sbjct: 100 CNSL-TELPELPQS----LKSLLVDNNNLK-ALSDLPPLL--------EYLGVSNNQLEK 145
Query: 217 KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ------------- 263
LP + +L+ + ++ L + SL+ + Q
Sbjct: 146 --LPELQNSSFLKIIDVDNNS------LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFL 197
Query: 264 ---NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI 320
+ L L L+ ++ + L + L L + + +
Sbjct: 198 TAIYADNNSLKKLPDLPLSLESIVAGNN-----ILEE-LPELQNLPFLTTIY--ADNNLL 249
Query: 321 KAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380
K + + SL+ L++ L+ + + + L LD++ + +++
Sbjct: 250 KTLPDLPPSLEALNVRDNY------LTDLPELPQSLTFLDVS------ENIFSGLSELPP 297
Query: 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI-SRCSKLSSLKLGI 439
+L L ++ S + LEEL+++ N+ L + + +L L
Sbjct: 298 NLYYLNASSNEIRS------LCDLPPSLEELNVSNNK-----LIELPALPPRLERLIASF 346
Query: 440 CSNITDEGLKHVGSTCSMLKELDL 463
L V LK+L +
Sbjct: 347 NH------LAEVPELPQNLKQLHV 364
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 53/369 (14%), Positives = 112/369 (30%), Gaps = 86/369 (23%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWLA 158
L + +S ++L L L N FL ID+ N ++ +LE +
Sbjct: 133 LEYLGVSNNQLEK---LPELQ-NSSFLKIIDVDNNSLKKL-------PDLPPSLEFIAAG 181
Query: 159 RCKL--ITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE 216
+L + +L L + + L ++L+ ++ + E
Sbjct: 182 NNQLEELPELQ------NLPFLTAIYADNN-SLKKLPDLPLSLE-----SIVAGNNILEE 229
Query: 217 KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ------------- 263
LP + L +L + + L ++ SL+ALN+
Sbjct: 230 --LPELQNLPFLTTIYADNNL------LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTF 281
Query: 264 -NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKA 322
++S S L + L L + ++ P L+ + + +
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASS-----NEIRSLCDLPPSLEELNVSNNK-----LIE 331
Query: 323 IGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITY------------- 369
+ L+ L S L+ V + + L++L + +
Sbjct: 332 LPALPPRLERLIASFNH------LAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRM 384
Query: 370 -ASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428
+ + + + +L L +E L + + +E+L + V D +
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNPLREFPD--IPES----VEDLRMNSERVVDPYEFAHET 438
Query: 429 CSKLSSLKL 437
KL
Sbjct: 439 TDKLEDDVF 447
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 8e-06
Identities = 51/426 (11%), Positives = 119/426 (27%), Gaps = 79/426 (18%)
Query: 89 LSIVSSSSWKLT-LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA 147
++ +S + +LT L+ I + S T ++ + N + +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYEN-------EELSWS 488
Query: 148 EAKNLERLWLARCKLITDL-------------------------------GIGRIAACCR 176
K+L + L C +T L +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC 236
K+++ + + + + K ++ LD + + L L DL L+
Sbjct: 549 KIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYN 605
Query: 237 H--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY----SFW 290
I ++ L S + + ++ K + + +Y S
Sbjct: 606 QIEEIP----EDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660
Query: 291 VSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-----KCSGVTDEE 345
+ S + ++ + + + + + LS + +
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMTSIPENSLKP 719
Query: 346 LSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405
++ L +D+ K+T S + T L+++ + S+ L
Sbjct: 720 KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NS 775
Query: 406 QYLEELDITENEVNDEGL------KSISRCSKLSSLKLGIC--SNITDEGLKHVGSTCSM 457
L+ I + I+ C L L++G + ++
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ------- 828
Query: 458 LKELDL 463
L LD+
Sbjct: 829 LYILDI 834
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 34/236 (14%), Positives = 84/236 (35%), Gaps = 32/236 (13%)
Query: 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262
+ +T+ L + L G +G+ +L L L
Sbjct: 20 NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQY----LNNLIGLELKDN 73
Query: 263 QNISHV-GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIK 321
Q I+ + L +L K + +L L+ + ++S + ++++ + + +
Sbjct: 74 Q-ITDLAPLKNLTK----ITELELSGNPL--KNVS-AIAGLQSIKTLDLTSTQI--TDVT 123
Query: 322 AIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381
+ +L+ L L +T+ + L+ L I +++ + + +
Sbjct: 124 PLAG-LSNLQVLYLDLNQ-ITNIS---PLAGLTNLQYLSIGNA-QVS--DLTPL-ANLSK 174
Query: 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437
LT+L+ + K+ L E+ + N+++D + ++ S L + L
Sbjct: 175 LTTLKADDNKISDISPL----ASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 46/306 (15%), Positives = 96/306 (31%), Gaps = 60/306 (19%)
Query: 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDL-GVELVALKCQEIRTLD 208
N ++ + + + + L VT + GV+ + L+
Sbjct: 19 ANAIKIAAGKSNVTDTVTQAD----LDGITTLSAFGT-GVTTIEGVQ----YLNNLIGLE 69
Query: 209 LSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHV 268
L IT+ L P+ L + +L L G + +A +S+K L+L+ Q
Sbjct: 70 LKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIAG----LQSIKTLDLTSTQITDVT 123
Query: 269 GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG 328
L+ L LQ L L N I + I +
Sbjct: 124 PLAGLSN----LQVLYLD-------------LN-----QI---------TNISPLAGLT- 151
Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
+L+ LS+ L+ + +L L KI+ I+ + +L + ++
Sbjct: 152 NLQYLSIGNAQVSDLTPLA----NLSKLTTLKADDN-KIS--DISPLAS-LPNLIEVHLK 203
Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGL 448
++ L + +T + ++ + + + +K + I +
Sbjct: 204 NNQISDVSPL----ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259
Query: 449 KHVGST 454
G+
Sbjct: 260 SDNGTY 265
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 48/335 (14%), Positives = 85/335 (25%), Gaps = 81/335 (24%)
Query: 149 AKNLERLWLARCKLITDL--GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
+ E L+ + + + ++ + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQ----WQRHYNADRNRWHSAWRQA-NSNNPQIETRTG 65
Query: 207 LDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS---CKSLKALNLSKCQ 263
L + L L L L+ + +
Sbjct: 66 RALKATADLLEDA----TQPGRVALELRSVP------LPQFPDQAFRLSHLQHMTIDAAG 115
Query: 264 NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC-LHNFPMLQSIKFEDCPVARSGIKA 322
L L L + L++ L P +
Sbjct: 116 ------LMELPDTMQQFAGL-------ETLTLARNPLRALP-----------------AS 145
Query: 323 IGNWHGSLKELSLSKCS-------GVTDEELSFVVQSHKELRKLDITCCRKITY--ASIN 373
I + + L+ELS+ C + + S Q L+ L + I ASI
Sbjct: 146 IASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIA 203
Query: 374 SITKTCTSLTSLRMECCKLVSWEAFVL---IGQQCQYLEELDITENEVNDEGLKSISRCS 430
+ +L SL++ L + L I LEELD+ +
Sbjct: 204 N----LQNLKSLKIRNSPLSA-----LGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 431 KLSSLKLGICSNITD--EGLKHVGSTCSMLKELDL 463
L L L CSN+ + + L++LDL
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHR----LTQLEKLDL 284
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 65/384 (16%), Positives = 134/384 (34%), Gaps = 91/384 (23%)
Query: 23 ILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTS---ARYPFITQLDLS 79
+L ++ + A +F+L+C+ + +R +++ L A T + S S
Sbjct: 249 VLLNVQ-NAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 80 LC-----------PRA----NDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL-TVN 123
L PR N LSI++ S +R L+ + V L T+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAES-----IRD-GLATWDNWKHVNCDKLTTII 359
Query: 124 CRFLTEIDLSNGTEMGDAAA-----AAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178
L ++ + +M D + A I L +W +I + + K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIW---FDVIKSD-VMVVVNKLHK- 413
Query: 179 KLLCLKW----CIRVTDLGVELVALKCQEIRTL-----DLSYLPI----TEKCLPPVVK- 224
L K I + + +EL +K + L D Y ++ +PP +
Sbjct: 414 YSLVEKQPKESTISIPSIYLEL-KVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQ 471
Query: 225 --LQYLEDLVLEGCHGIDDDGLASVEYSCK----SLKALNLSKCQN-ISHVGLSSLIKG- 276
++ G H L ++E+ + + L+ + I H + G
Sbjct: 472 YFYSHI------GHH------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 277 -ADYLQQLILAYSFWVSADLSKCLHNFPMLQSI-KFEDCPVARSGIKAIGNWHGSLKELS 334
+ LQQL Y ++ + ++ +I F + + I + + L ++
Sbjct: 520 ILNTLQQLKF-YKPYICDN---DPKYERLVNAILDF----LPKIEENLICSKYTDLLRIA 571
Query: 335 LSKCSGVTDEELSFVVQSHKELRK 358
L E+ + ++HK++++
Sbjct: 572 LM------AEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 77/469 (16%), Positives = 137/469 (29%), Gaps = 140/469 (29%)
Query: 35 KSFSLTCRNFYSI-------ESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDD 87
S+ + C+ + I + +L+ L + L Q+D + R++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLY---------QIDPNWTSRSD-- 218
Query: 88 ALSIVSSSSWKLTLRSINLSRSRLF-TKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146
SS+ KL + SI RL +K + L V + + A
Sbjct: 219 -----HSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LL--------NVQNAKA 258
Query: 147 AEAKNLERLWLARCK-LIT--DLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203
A NL CK L+T + + + L + L E
Sbjct: 259 WNAFNL------SCKILLTTRFKQVTDFLSAATTTHI----------SLDHHSMTLTPDE 302
Query: 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263
+++L L YL + LP V L DGLA+ + K +N K
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDN----WKHVNCDKLT 356
Query: 264 NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323
I L+ L +++ F LS FP +
Sbjct: 357 TIIESSLNVL--EPAEYRKM-----FD---RLSV----FP-------PSAHI-------- 387
Query: 324 GNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI----TKTC 379
LSL + + + V + HK + K + SI SI
Sbjct: 388 -----PTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISIPSIYLELKVKL 439
Query: 380 TSLTSL------RMECCKLVSWEAFVL----------IG---QQCQYLEELDITENEVND 420
+ +L K + + IG + ++ E + + D
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR-FVT 468
+ + + K+ GS + L++L Y+ ++
Sbjct: 500 --FRFLEQ--KI---------RHDSTAWNASGSILNTLQQLKFYKPYIC 535
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 47/285 (16%), Positives = 84/285 (29%), Gaps = 30/285 (10%)
Query: 202 QEIRTLDLSYLPITEKCLPPVV--KLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKAL 257
++++ L+L + L L L L + D L L
Sbjct: 48 EQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG----LFHLFEL 102
Query: 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR 317
L C V + L +L L+ + S L L+SI F +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162
Query: 318 SGIKAIGNWHG-SLKELSLSKCSGVTDEELSFV----VQSHKELRKLDITCCR---KITY 369
+ G +L SL+ S + + + + L LD++ IT
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222
Query: 370 ASINSITKT-------CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422
N+I+K+ + + + G + LD++ V
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282
Query: 423 LKSISRCSKLSSLKLGIC--SNITDEGLKHVGSTCSMLKELDLYR 465
+ L L L + I DE + + L+ L+L
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDN----LQVLNLSY 323
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 60/383 (15%), Positives = 122/383 (31%), Gaps = 43/383 (11%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC 160
L + L L V N + LT +DLS + + +L+ + +
Sbjct: 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Query: 161 KLITDLGIGRIAA-CCRKLKLLCLK----WCIRVTDLGVELVALKCQEIRTLDLSYLPIT 215
+ I + + + L L + D G + + + LD+S T
Sbjct: 159 Q-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217
Query: 216 EK---------CLPPVVKLQYLEDLVLEGCHG-----IDDDGLASVEYSCKSLKALNLSK 261
L ++ G D + A + S S++ L+LS
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS--SVRHLDLSH 275
Query: 262 CQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIK 321
+ + S + + L+ L LAY+ + + LQ + +
Sbjct: 276 G-FVFSL-NSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 322 AIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381
+ + L K ++ +F + ++L+ LD+ + +I S
Sbjct: 333 NFYGLP-KVAYIDLQKNHIAIIQDQTF--KFLEKLQTLDLRDNA------LTTIH-FIPS 382
Query: 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSISRCSKLSSLKLGIC 440
+ + + KLV+ + + + ++EN N + L + R L L L
Sbjct: 383 IPDIFLSGNKLVT------LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN-Q 435
Query: 441 SNITDEGLKHVGSTCSMLKELDL 463
+ + S L++L L
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFL 458
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 70/402 (17%), Positives = 130/402 (32%), Gaps = 62/402 (15%)
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSS-WKLT-LRSINLSRSRLFTKVGLSSLTVNCR 125
+P + LDLS C + + + L+ L ++ L+ + + + L + +
Sbjct: 49 FSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFS-GLS 100
Query: 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK- 184
L ++ T + I K L+ L +A I + + L+ L L
Sbjct: 101 SLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 158
Query: 185 ---WCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVV-KLQYLEDLVLEGCHGID 240
I TDL V L + + +LDLS P+ + P K L L L
Sbjct: 159 NKIQSIYCTDLRV-LHQMPLLNL-SLDLSLNPMNF--IQPGAFKEIRLHKLTLRNN-FDS 213
Query: 241 DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD------YLQQLILAYSFWVSAD 294
+ + + L+ L + + L K A +++ LAY + D
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273
Query: 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG--SLKELSLSKCS-----GVTDEELS 347
+ + + S I+ + ++ + L L C + + L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVT-----IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 348 FVVQSH------------KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS- 394
+ + L LD++ + TSL L + +++
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Query: 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436
F + LE LD + LK +S S SL+
Sbjct: 389 SSNF----LGLEQLEHLDFQHSN-----LKQMSEFSVFLSLR 421
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 56/292 (19%), Positives = 94/292 (32%), Gaps = 67/292 (22%)
Query: 150 KNLERLWLARCKLITDL--GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTL 207
L + L T L + + L + +T L L RTL
Sbjct: 40 NGNAVLNVGESGL-TTLPDCLPA------HITTLVIPDN-NLTSLPALPPEL-----RTL 86
Query: 208 DLSYLPITEKCLPPVV-KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNIS 266
++S +T LP + L L L + L L + Q
Sbjct: 87 EVSGNQLTS--LPVLPPGLLELSIFSN---------PLTHLPALPSGLCKLWIFGNQ--- 132
Query: 267 HVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW 326
L+SL LQ+L ++ + L+ L + + + ++
Sbjct: 133 ---LTSLPVLPPGLQELSVSDNQ-----LASLPALPSELCKLWAYNNQ-----LTSLPML 179
Query: 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386
L+ELS+S +L+ + EL KL R + S+ + L L
Sbjct: 180 PSGLQELSVSDN------QLASLPTLPSELYKLWAYNNR------LTSLPALPSGLKELI 227
Query: 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKL 437
+ +L S L + L+EL ++ N L S+ S L SL +
Sbjct: 228 VSGNRLTSLPV--LPSE----LKELMVSGN-----RLTSLPMLPSGLLSLSV 268
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 84/381 (22%), Positives = 126/381 (33%), Gaps = 98/381 (25%)
Query: 101 LRSINLSRSRLFTKVG-LSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLAR 159
+ SI+LS L +SS ++ L + LSN G + + + +L L L+R
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSR 109
Query: 160 CKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSY--LPITEK 217
L G + +T LG C ++ L++S L K
Sbjct: 110 NSLS-----GPVTT---------------LTSLG------SCSGLKFLNVSSNTLDFPGK 143
Query: 218 CLPPVVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275
+ +KL LE L L G + G + C LK L +S + V +S +
Sbjct: 144 -VSGGLKLNSLEVLDLSANSISGANVVGWVLSD-GCGELKHLAISGNKISGDVDVSRCVN 201
Query: 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG-IKAIGNWHGSLKELS 334
L+ L D+S NF S I +G+ +L+ L
Sbjct: 202 ----LEFL----------DVSSN--NF---------------STGIPFLGDCS-ALQHLD 229
Query: 335 LSKC--SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT-----CTSLTSLRM 387
+S SG +S + EL+ L+I S N SL L +
Sbjct: 230 ISGNKLSGDFSRAIS----TCTELKLLNI---------SSNQFVGPIPPLPLKSLQYLSL 276
Query: 388 ECCKLV----SWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443
K + + C L LD++ N CS L SL L N
Sbjct: 277 AENKFTGEIPDF-----LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NF 330
Query: 444 TDEGLKHVGSTCSMLKELDLY 464
+ E LK LDL
Sbjct: 331 SGELPMDTLLKMRGLKVLDLS 351
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 28/178 (15%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSN--GTEMGDAAAAAIAEAKNLERLWLA 158
NL + + V L+ + + N + A + NL+ L L+
Sbjct: 21 AVKQNLGKQSVTDLVSQKELS----GVQNFNGDNSNIQSL-----AGMQFFTNLKELHLS 71
Query: 159 RCKLITDL-GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEK 217
+ I+DL + KL+ L + R+ +L + + L L + +
Sbjct: 72 HNQ-ISDLSPLKD----LTKLEELSVNRN-RLKNLN----GIPSACLSRLFLDNNELRD- 120
Query: 218 CLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275
++ L+ LE L + L L+ L+L + + GL+ L K
Sbjct: 121 -TDSLIHLKNLEILSIRNNKLKSIVMLG----FLSKLEVLDLHGNEITNTGGLTRLKK 173
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.93 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.93 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.93 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.92 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.91 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.91 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.9 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.9 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.9 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.89 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.89 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.89 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.88 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.88 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.88 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.88 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.87 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.86 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.86 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.85 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.85 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.85 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.85 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.84 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.83 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.82 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.82 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.81 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.81 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.79 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.76 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.75 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.74 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.73 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.71 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.69 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.69 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.69 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.68 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.68 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.67 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.67 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.67 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.67 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.66 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.63 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.63 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.63 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.63 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.62 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.62 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.61 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.6 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.6 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.6 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.57 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.57 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.54 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.53 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.53 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.53 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.52 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.51 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.51 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.5 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.48 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.48 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.43 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.43 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.43 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.43 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.41 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.38 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.36 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.36 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.36 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.33 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.32 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.29 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.29 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.28 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.25 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.24 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.23 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.22 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.22 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.18 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.18 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.17 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.13 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.11 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.1 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.09 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.09 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.06 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.04 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.04 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.04 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.98 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.96 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.93 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.93 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.91 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.9 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.87 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.86 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.84 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.84 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.83 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.83 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.75 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.74 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.69 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.68 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.55 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.55 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.5 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.47 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.44 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.43 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.38 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.37 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.32 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.31 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.3 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.19 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.17 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.11 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.09 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.06 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.04 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.02 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.94 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.91 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.81 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.79 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.71 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.55 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.47 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.47 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.42 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.35 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.17 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.14 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 90.32 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=353.35 Aligned_cols=447 Identities=20% Similarity=0.264 Sum_probs=247.3
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccch--hhHHHHhccCCCccEEecCCCCCCCh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA--ETLSRTSARYPFITQLDLSLCPRAND 86 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~--~~l~~~~~~~~~l~~L~l~~~~~~~~ 86 (473)
.+.|+.||+||+.+||+ |+++.+|+.++++|||+|+++....++.+..... ......+.++++++.++++++....+
T Consensus 3 ~d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp -------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred ccchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 36799999999999999 9987999999999999999996555544433321 23456778888899998888754332
Q ss_pred hh-------------HHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHH-cCCCC
Q 012001 87 DA-------------LSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA-EAKNL 152 (473)
Q Consensus 87 ~~-------------~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L 152 (473)
.. +..+ ...+++|++|+++++. ++...+..+...+++|++|++.+|..+++.....+. .+++|
T Consensus 82 ~~l~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAM--SSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred cccccccccchhhHHHHHH--HHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 21 2222 3456788888888765 677777777667888888888888666665444444 68888
Q ss_pred CEEecccCcccCHH---HHHHHHhcCCcCceeecccCC-CCCHHHHHHHHhhCCCCcEEeeccc-cCCCCcccccccCcc
Q 012001 153 ERLWLARCKLITDL---GIGRIAACCRKLKLLCLKWCI-RVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVKLQY 227 (473)
Q Consensus 153 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 227 (473)
++|++.+|. +++. .+..+...+++|++|+++++. .++...+..+...+++|++|++.+| .+.+ ....+..+++
T Consensus 159 ~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~ 236 (594)
T 2p1m_B 159 KELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQ 236 (594)
T ss_dssp CEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTT
T ss_pred CEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCc
Confidence 888888765 2221 233333346677777777654 3555566666666777777777765 2111 1112223444
Q ss_pred cCeeeccCCCC----------------------------CChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 228 LEDLVLEGCHG----------------------------IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 228 L~~L~l~~~~~----------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
|++|.+..+.. .....+..+...+++|++|+++++. +++..+..++..+++
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK 315 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence 44444332210 1111111111124555555555555 444444444555555
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecC---------CcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHH
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFED---------CPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV 350 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~---------~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (473)
|++|++.++ .....+......+++|+.|++.+ +.+++.++..+...+++|++|.+. |+.+++.++..+.
T Consensus 316 L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 316 LQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIA 393 (594)
T ss_dssp CCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHH
T ss_pred cCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHH
Confidence 555555544 11111222222355555555522 234455555554445555555332 3455555554444
Q ss_pred HhCCCCcEEecC-----CCCCCC----HHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 351 QSHKELRKLDIT-----CCRKIT----YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 351 ~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
..+++|+.|+++ +|..++ +.++..++..+++|+.|++++ .+++.++..+...+++|+.|++++|.+++.
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 455555555555 344454 444444445555555555543 355555555554455555555555555555
Q ss_pred hhhhh-hcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 422 GLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 422 ~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++..+ ..+++|+.|++++| .+++.++..+...+++|++|++++|+
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 55444 24555555555555 44555555455455555555555554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=345.75 Aligned_cols=460 Identities=18% Similarity=0.222 Sum_probs=317.4
Q ss_pred Cccccc-cCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccc--hhhHHHHhccCCCccEEe
Q 012001 1 MEAKRK-KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC--AETLSRTSARYPFITQLD 77 (473)
Q Consensus 1 ~~~~~~-~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~--~~~l~~~~~~~~~l~~L~ 77 (473)
||.... +.......||+||+.+||+ |+++.+|+.+++.|||+|+.+....++.+.... ....+..+.+++++++|+
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMT-YITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLK 79 (592)
T ss_dssp -----------CCCCCGGGTHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEE
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHH-hcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEE
Confidence 555432 2223445799999999999 994499999999999999999766655544332 234567788999999999
Q ss_pred cCCCCCCChh-------------hHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCC-CcEEEcCCCCcccHHHH
Q 012001 78 LSLCPRANDD-------------ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF-LTEIDLSNGTEMGDAAA 143 (473)
Q Consensus 78 l~~~~~~~~~-------------~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~ 143 (473)
+++++...+. ++..+ ...+++|++|+++++. +....+..+...+++ |++|++++|..+.+...
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l 156 (592)
T 3ogk_B 80 LKGKPRAAMFNLIPENWGGYVTPWVTEI--SNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156 (592)
T ss_dssp EECSCGGGGGTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH
T ss_pred ecCCcchhhcccccccccccchHHHHHH--HhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHH
Confidence 9876543321 22222 3367889999998873 666666666655666 99999988865665554
Q ss_pred HHH-HcCCCCCEEecccCcccCH---HHHHHHHhcCCcCceeecccCCC--CCHHHHHHHHhhCCCCcEEeeccccCCCC
Q 012001 144 AAI-AEAKNLERLWLARCKLITD---LGIGRIAACCRKLKLLCLKWCIR--VTDLGVELVALKCQEIRTLDLSYLPITEK 217 (473)
Q Consensus 144 ~~l-~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (473)
..+ ..+++|++|++.+|. +.+ ..+..+...+++|++|+++++.. +....+..+...+++|+.|++.++.+.+
T Consensus 157 ~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~- 234 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE- 234 (592)
T ss_dssp HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-
T ss_pred HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-
Confidence 444 368889999988874 322 22555666688888888876543 3456677777788888888888875542
Q ss_pred cccccccCcccCeeeccCCCC------------------------CChHHHHHHHhcCCCCcEEecCCCCccchHHHHHH
Q 012001 218 CLPPVVKLQYLEDLVLEGCHG------------------------IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273 (473)
Q Consensus 218 ~~~~l~~~~~L~~L~l~~~~~------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (473)
....+..+++|++|.++.+.. .....+..+...+++|++|+++++. +++..+..+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH
Confidence 222333445555555442110 1111222233347788888888877 666666666
Q ss_pred HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecC-----------CcCChhHHHHHHhhCCCCCeEecCCCCCCC
Q 012001 274 IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFED-----------CPVARSGIKAIGNWHGSLKELSLSKCSGVT 342 (473)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 342 (473)
+..+++|++|++.++ .....+......+++|+.|++.+ +.+++.++..+...+++|++|++ .|+.++
T Consensus 314 ~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~ 391 (592)
T 3ogk_B 314 IQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDIT 391 (592)
T ss_dssp HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCC
T ss_pred HHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCcc
Confidence 778888888888733 22223344446788888888883 45777777777767888888888 447788
Q ss_pred hHHHHHHHHhCCCCcEEecCC---CCCCCH----HHHHHHHhcCCCCCEEEccCCCC-CCHHHHHHHHhcCccCCeeeec
Q 012001 343 DEELSFVVQSHKELRKLDITC---CRKITY----ASINSITKTCTSLTSLRMECCKL-VSWEAFVLIGQQCQYLEELDIT 414 (473)
Q Consensus 343 ~~~~~~~~~~~~~L~~L~l~~---~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~ 414 (473)
+.++..+...+++|++|++++ |..+++ .++..+...+++|+.|++++|.+ +++.++..+...+++|+.|+++
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 877777777788888888863 445664 45666677788888888877653 6788888887778888888888
Q ss_pred ccccChhhhhhh-hcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCccc
Q 012001 415 ENEVNDEGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTFHL 471 (473)
Q Consensus 415 ~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 471 (473)
+|.+++.++..+ ..+++|+.|++++| .+++.++..+...+++|++|++++|. ++.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 888888776655 46888888888888 58887888887788888888888887 654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=273.80 Aligned_cols=391 Identities=18% Similarity=0.254 Sum_probs=312.6
Q ss_pred HHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH
Q 012001 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (473)
Q Consensus 63 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 142 (473)
+..+...+++|++|+++++. +++..+..+ ...+++|++|++.+|..++...+..+...+++|++|++++|. +++..
T Consensus 97 l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHH--HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC
T ss_pred HHHHHHhCCCCCeEEeeCcE-EcHHHHHHH--HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc
Confidence 56667789999999999885 677666655 234789999999998778888888888889999999999885 44322
Q ss_pred HHHHH----cCCCCCEEecccCc-ccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeecccc----
Q 012001 143 AAAIA----EAKNLERLWLARCK-LITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP---- 213 (473)
Q Consensus 143 ~~~l~----~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---- 213 (473)
...+. .+++|++|++.++. .++...+..+...+++|++|++.+|..+. .+......+++|++|.+..+.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--HHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--HHHHHHhcCCcceEcccccccCccc
Confidence 22232 57799999999875 56677788877779999999999874433 366666788888888765431
Q ss_pred -------------------------CCCCccccc-ccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccch
Q 012001 214 -------------------------ITEKCLPPV-VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISH 267 (473)
Q Consensus 214 -------------------------~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 267 (473)
.....+..+ ..+++|++|++++|. +++..+..+...+++|++|++.++ ..+
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 111122222 257899999999977 888777777767999999999987 556
Q ss_pred HHHHHHHhcCcccceeeccc--------cccCchhHHHhhh-CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecC--
Q 012001 268 VGLSSLIKGADYLQQLILAY--------SFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-- 336 (473)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~-- 336 (473)
.++..+...+++|++|++.. +..+.+.....+. .+++|+.|.+..+.+++..+..+...+++|++|++.
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 67777778899999999933 3345554444444 599999999988899999999998789999999999
Q ss_pred ---CCCCCC----hHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCC
Q 012001 337 ---KCSGVT----DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (473)
Q Consensus 337 ---~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (473)
+|+.++ +.++..++..+++|+.|++++ .+++..+..+...+++|+.|++++|. +++.++..+...+++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcC
Confidence 677888 778888899999999999977 69999999888789999999999976 89999988877899999
Q ss_pred eeeecccccChhhhhhhh-cCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 410 ELDITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
.|++++|.+++.++..+. .+++|+.|++++| .+++.++..+...+|+|+...+.+.
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEEEecCC
Confidence 999999999988877655 5999999999999 7799899998888999977665543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=264.96 Aligned_cols=394 Identities=14% Similarity=0.155 Sum_probs=312.5
Q ss_pred hHHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHH
Q 012001 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA 141 (473)
Q Consensus 62 ~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 141 (473)
.+..+...+++|++|+++++ .+++..+..+ ......+|++|+++++..+....+..+...+++|++|+++++. +.+.
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~ 179 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRM-IVSDLDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEK 179 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESC-BCCHHHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECC
T ss_pred HHHHHHhhCCCCCeEEeecc-EecHHHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCc
Confidence 46667779999999999988 4666666655 2222235999999998877888888888899999999999984 3322
Q ss_pred ----HHHHHHcCCCCCEEecccCcc--cCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCC
Q 012001 142 ----AAAAIAEAKNLERLWLARCKL--ITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPIT 215 (473)
Q Consensus 142 ----~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 215 (473)
.......+++|++|++.++.. +....+..+...+++|++|++.++. +.. +......+++|++|.+......
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~--l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILE--LVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG--GHHHHHHCTTCCEEEECBCCCC
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHH--HHHHHhhhhHHHhhcccccccc
Confidence 223456799999999987653 3466777777789999999999864 333 3345568899999998743111
Q ss_pred -------------------------CCccc-ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHH
Q 012001 216 -------------------------EKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVG 269 (473)
Q Consensus 216 -------------------------~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 269 (473)
...+. .+..+++|++|++++|. +++..+..+...+++|+.|++. ..+.+.+
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~ 333 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRG 333 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHH
T ss_pred cchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHH
Confidence 11122 23368899999999976 7877776666669999999998 3466777
Q ss_pred HHHHHhcCcccceeeccc----------cccCchhH-HHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecC--
Q 012001 270 LSSLIKGADYLQQLILAY----------SFWVSADL-SKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-- 336 (473)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~----------~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~-- 336 (473)
+..+...+++|++|++++ +..+.... ......+++|+.|++..+.+++..+..++..+++|++|++.
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 888888899999999994 55565543 34456799999999988899999999998779999999997
Q ss_pred -CCCCCCh----HHHHHHHHhCCCCcEEecCCCC-CCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 337 -KCSGVTD----EELSFVVQSHKELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 337 -~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
.|+.+++ .++..++..+++|++|++++|. .+++..+..+...+++|+.|++++|. +++.++..+...+++|+.
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCe
Confidence 3567775 5788888899999999998765 47888898888889999999999865 898898888889999999
Q ss_pred eeecccccChhhhhhhh-cCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 411 LDITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
|++++|.+++.++..+. .+++|+.|++++| ++++.++..+.+.+|.+....+...
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999999988777654 6999999999999 7999888888888998877666543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=237.20 Aligned_cols=383 Identities=21% Similarity=0.277 Sum_probs=284.0
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHH---HHHHHhhcCCCCcEEEcCCCCcccHHHHHHHH
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKV---GLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA 147 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 147 (473)
+++++|+++++. +++..+..+ ...+++|++|+++++. +... .+......+++|++|+++++ .+.+.....+.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHH--HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred ccceehhhhhcc-cCchhHHHH--HhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHH
Confidence 468899998764 555554443 3567899999999886 5544 44455557899999999998 57776555555
Q ss_pred c-CC----CCCEEecccCcccCHHH---HHHHHhcCCcCceeecccCCCCCHHHHHHHHhh----CCCCcEEeeccccCC
Q 012001 148 E-AK----NLERLWLARCKLITDLG---IGRIAACCRKLKLLCLKWCIRVTDLGVELVALK----CQEIRTLDLSYLPIT 215 (473)
Q Consensus 148 ~-~~----~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~ 215 (473)
. ++ +|++|++.+|. +++.+ +......+++|++|+++++. +++.+...+... .++|++|++++|.++
T Consensus 78 ~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 4 55 69999999975 66543 33344568999999999975 776666655443 467999999999888
Q ss_pred CCcccc----cccCcccCeeeccCCCCCChHHHHHHHh----cCCCCcEEecCCCCccchHH---HHHHHhcCcccceee
Q 012001 216 EKCLPP----VVKLQYLEDLVLEGCHGIDDDGLASVEY----SCKSLKALNLSKCQNISHVG---LSSLIKGADYLQQLI 284 (473)
Q Consensus 216 ~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 284 (473)
+..... +..+++|++|+++++. +++.....+.. ..++|++|+++++. ++..+ +...+..+++|++|+
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEe
Confidence 766444 3467999999999954 77766665554 25699999999987 44433 455566789999999
Q ss_pred ccccccCchhHHH-----hhhCCCCCCeeEecCCcCChhHHHHHHh---hCCCCCeEecCCCCCCChHHHHHHHHh----
Q 012001 285 LAYSFWVSADLSK-----CLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFVVQS---- 352 (473)
Q Consensus 285 l~~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~---- 352 (473)
++++. +.+.... ....+++|+.|++++|.+++.+...+.. .+++|++|++++ +.+++.+...+...
T Consensus 234 Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 234 LGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEP 311 (461)
T ss_dssp CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTST
T ss_pred ccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccC
Confidence 99984 4433222 2235899999999999999887554442 589999999999 47777665555443
Q ss_pred CCCCcEEecCCCCCCCHHHH---HHHHhcCCCCCEEEccCCCCCCHHHHHHHHhc----CccCCeeeecccccChhhhhh
Q 012001 353 HKELRKLDITCCRKITYASI---NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ----CQYLEELDITENEVNDEGLKS 425 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~ 425 (473)
.++|++|++++|. +++.+. ......+++|+.|++++| .+++.+...+... +++|+.|++++|.+++.+...
T Consensus 312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 2699999999986 665543 334456899999999997 5888777766542 679999999999999855444
Q ss_pred ----hhcCCCCCeeecCCCCCcchHHHHHHHhcCc----cCCeeecCCCC
Q 012001 426 ----ISRCSKLSSLKLGICSNITDEGLKHVGSTCS----MLKELDLYRFV 467 (473)
Q Consensus 426 ----l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~L~~L~l~~c~ 467 (473)
+..+++|++|++++| .+++.++..+.+.++ +|+.|.+.++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 456899999999999 999988888776443 58888887764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=233.39 Aligned_cols=388 Identities=20% Similarity=0.268 Sum_probs=289.7
Q ss_pred hhHHHHhccCCCccEEecCCCCCCChhhHHhhh-ccccCCCccEEEcCCCccccHHHHHHHhhcCC----CCcEEEcCCC
Q 012001 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVS-SSSWKLTLRSINLSRSRLFTKVGLSSLTVNCR----FLTEIDLSNG 135 (473)
Q Consensus 61 ~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~ 135 (473)
..+...+..+++++.|+++++. +.+.....++ ....+++|++|+++++. +....+..+...++ +|++|+++++
T Consensus 18 ~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 18 ARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred hhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCC
Confidence 3456668889999999999985 5655444442 24567899999999875 67767777776676 7999999998
Q ss_pred CcccH----HHHHHHHcCCCCCEEecccCcccCHHHHHHHHhc----CCcCceeecccCCCCCHHH---HHHHHhhCCCC
Q 012001 136 TEMGD----AAAAAIAEAKNLERLWLARCKLITDLGIGRIAAC----CRKLKLLCLKWCIRVTDLG---VELVALKCQEI 204 (473)
Q Consensus 136 ~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L 204 (473)
.+++ .....+..+++|++|+++++. +++.++..+... .++|++|++++|. +++.+ +......+++|
T Consensus 96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 96 -CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTC
T ss_pred -CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCC
Confidence 4664 234566789999999999976 777666665553 4579999999874 55433 34445578999
Q ss_pred cEEeeccccCCCCccccccc-----CcccCeeeccCCCCCChHHH----HHHHhcCCCCcEEecCCCCccchHHHHHHHh
Q 012001 205 RTLDLSYLPITEKCLPPVVK-----LQYLEDLVLEGCHGIDDDGL----ASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (473)
++|++++|.+++.....+.. .++|++|++++| .+++.+. ..+. .+++|++|+++++. +++.++..+..
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~-l~~~~~~~l~~ 249 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVA-SKASLRELALGSNK-LGDVGMAELCP 249 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHH-HCTTCCEEECCSSB-CHHHHHHHHHH
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHH-hCCCccEEeccCCc-CChHHHHHHHH
Confidence 99999999887766666542 669999999996 4555432 2333 38999999999886 56555444332
Q ss_pred ----cCcccceeeccccccCchh----HHHhhhCCCCCCeeEecCCcCChhHHHHHHhh----CCCCCeEecCCCCCCCh
Q 012001 276 ----GADYLQQLILAYSFWVSAD----LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW----HGSLKELSLSKCSGVTD 343 (473)
Q Consensus 276 ----~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~ 343 (473)
.+++|++|+++++. +... ++..+..+++|+.|++++|.+.+.++..+... .++|++|++++| .+++
T Consensus 250 ~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~ 327 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTA 327 (461)
T ss_dssp HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBG
T ss_pred HHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCch
Confidence 57899999999984 4443 56667789999999999999988877777643 369999999996 4665
Q ss_pred H---HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc----CCCCCEEEccCCCCCCHHHHHHHH---hcCccCCeeee
Q 012001 344 E---ELSFVVQSHKELRKLDITCCRKITYASINSITKT----CTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDI 413 (473)
Q Consensus 344 ~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l 413 (473)
. .+...+..+++|++|+++++. +++.+...+... .++|+.|++++|. +++.+...+. ..+++|++|++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEEC
Confidence 4 355667788999999999984 888777666542 6799999999975 8875544433 36899999999
Q ss_pred cccccChhhhhhhhc-----CCCCCeeecCCCCCcch---HHHHHHHhcCccCCee
Q 012001 414 TENEVNDEGLKSISR-----CSKLSSLKLGICSNITD---EGLKHVGSTCSMLKEL 461 (473)
Q Consensus 414 ~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~l~~---~~~~~~~~~~~~L~~L 461 (473)
++|.+++.+...+.. ..+|+.|.+.++ .... ..+..+.+..|+|+.+
T Consensus 406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~-~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCCCHHHHHHHHHHhccCCcchhheeeccc-ccCHHHHHHHHHHhccCCCcEee
Confidence 999999998877662 346888888877 4443 3455666678888765
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=226.73 Aligned_cols=296 Identities=19% Similarity=0.267 Sum_probs=186.8
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccchhhHHHHhccCCCccEEecCCCCCCChhh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDA 88 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~ 88 (473)
...|++||+|++.+||+ |++ .+|+.+++.|||+|++++... ..++.+++++... .+..
T Consensus 6 ~~~~~~LP~eil~~If~-~L~-~~d~~~~~~vc~~W~~~~~~~-------------------~~~~~l~l~~~~~-~~~~ 63 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDE-------------------SLWQTLDLTGKNL-HPDV 63 (336)
T ss_dssp -CCSSSSCHHHHHHHHT-TSC-HHHHHHTTSSCHHHHHHHTCS-------------------TTSSEEECTTCBC-CHHH
T ss_pred cCChhhCCHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHhcCc-------------------hhheeeccccccC-CHHH
Confidence 45799999999999999 997 999999999999999987432 1245555554322 2222
Q ss_pred HHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHH-HHHHHHcCCCCCEEecccCcccCHHH
Q 012001 89 LSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA-AAAAIAEAKNLERLWLARCKLITDLG 167 (473)
Q Consensus 89 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~ 167 (473)
+..+ ..++++.++++++. +.... ..+. .+++|++|+++++. +.+. ....+..+++|++|++.++. +++..
T Consensus 64 ~~~~----~~~~l~~L~l~~n~-l~~~~-~~~~-~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~ 134 (336)
T 2ast_B 64 TGRL----LSQGVIAFRCPRSF-MDQPL-AEHF-SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI 134 (336)
T ss_dssp HHHH----HHTTCSEEECTTCE-ECSCC-CSCC-CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH
T ss_pred HHhh----hhccceEEEcCCcc-ccccc-hhhc-cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH
Confidence 2111 12456666665542 11110 1122 45666666666663 4443 33345556666666666653 55544
Q ss_pred HHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccc-cCCCCccc-ccccCc-ccCeeeccCCC-CCChHH
Q 012001 168 IGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLP-PVVKLQ-YLEDLVLEGCH-GIDDDG 243 (473)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~-~L~~L~l~~~~-~~~~~~ 243 (473)
...+.. +++|++|++++|..+++..+......+++|++|++++| .+++..+. .+..++ +|++|++++|. .+++..
T Consensus 135 ~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 135 VNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp HHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred HHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 444444 66677777766655666555555556677777777766 66544322 244566 77777777754 455555
Q ss_pred HHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHH
Q 012001 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323 (473)
Q Consensus 244 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 323 (473)
+......+++|+.|+++++..+++..... +..+++|++|++++|....+.....+.++++|+.|++++| +++..+..+
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 54454458888888888877555444333 3567889999998886555555566788999999999998 888778777
Q ss_pred HhhCCCCCeEecCCCCCCC
Q 012001 324 GNWHGSLKELSLSKCSGVT 342 (473)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~ 342 (473)
...+++ |++++ +.++
T Consensus 292 ~~~l~~---L~l~~-n~l~ 306 (336)
T 2ast_B 292 KEALPH---LQINC-SHFT 306 (336)
T ss_dssp HHHSTT---SEESC-CCSC
T ss_pred HhhCcc---eEEec-ccCc
Confidence 644454 44654 4544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-28 Score=236.81 Aligned_cols=256 Identities=16% Similarity=0.145 Sum_probs=125.2
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCcc--------------
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-------------- 265 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-------------- 265 (473)
.+++|++|+++++.++ .....+..+++|++|+++++ .+.......+.. +++|++|+++++...
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN-KFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccC-CcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4566666666666554 23334455566666666653 233222222222 555555555544321
Q ss_pred -----------chHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEe
Q 012001 266 -----------SHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (473)
Q Consensus 266 -----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (473)
........+..+++|++|+++++. +....+..+..+++|+.|++++|.+...........+++|+.|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 110001112334445555554442 22223334445555555555555543322222112455666666
Q ss_pred cCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHH--HHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeee
Q 012001 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI--NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (473)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (473)
+++| .++.. .+..+..+++|++|+++++. ++...+ ......+++|+.|++++|. ++......+. .+++|+.|+
T Consensus 432 l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~ 506 (606)
T 3t6q_A 432 LSHS-LLDIS-SEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-SLKMMNHVD 506 (606)
T ss_dssp CTTC-CCBTT-CTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEE
T ss_pred CCCC-ccCCc-CHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhc-cccCCCEEE
Confidence 6653 22211 12223455666666666654 322111 0112346667777776653 3322222222 566777777
Q ss_pred ecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+++|.+++..+..+..+++| .|++++| .++... +.....+++|++|++++|+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASN-HISIIL-PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCC-GGGHHHHHTSSEEECTTCC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCC-cccccC-HhhcccCCCCCEEeCCCCC
Confidence 77777776666666667777 7777777 665322 2222356777777777765
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-28 Score=242.16 Aligned_cols=255 Identities=19% Similarity=0.138 Sum_probs=150.7
Q ss_pred CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
+++|++|++++|.+++.....+.++++|+.|+++++. +.......+.. +++|+.|+++++..... +...+..+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGS-LSKLRDLKLWLNMLEGE--IPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGG-CTTCCEEECCSSCCCSC--CCGGGGGCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhc-CCCCCEEECCCCcccCc--CCHHHcCCCCc
Confidence 3455555555555544444455566666666666642 22111222333 66677777766553211 11123456677
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
++|+++++. +....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++| .+... ++..+..+++|+.|+
T Consensus 469 ~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 469 ETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNN-SFSGN-IPAELGDCRSLIWLD 544 (768)
T ss_dssp CEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS-CCEEE-CCGGGGGCTTCCEEE
T ss_pred eEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCC-cccCc-CCHHHcCCCCCCEEE
Confidence 777777663 3334555667777777777777776655444444 5677777777774 33211 233355677777777
Q ss_pred cCCCCCCCHHHHH-------------------------------------------------------------------
Q 012001 361 ITCCRKITYASIN------------------------------------------------------------------- 373 (473)
Q Consensus 361 l~~~~~~~~~~~~------------------------------------------------------------------- 373 (473)
+++|.........
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 7765311000000
Q ss_pred -HHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHH
Q 012001 374 -SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 374 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
.....+++|+.|+++++. ++......+. .+++|+.|++++|.++...+..++.+++|+.|++++| +++. .++...
T Consensus 625 ~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g-~ip~~l 700 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNM-LSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDG-RIPQAM 700 (768)
T ss_dssp CCSCSSSBCCCEEECCSSC-CBSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEE-CCCGGG
T ss_pred chhhhccccccEEECcCCc-ccccCCHHHh-ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccC-cCChHH
Confidence 001124667788887754 4322222233 7888888888888888777778888888888888888 7764 244445
Q ss_pred hcCccCCeeecCCCC
Q 012001 453 STCSMLKELDLYRFV 467 (473)
Q Consensus 453 ~~~~~L~~L~l~~c~ 467 (473)
..+++|++|++++|+
T Consensus 701 ~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 701 SALTMLTEIDLSNNN 715 (768)
T ss_dssp GGCCCCSEEECCSSE
T ss_pred hCCCCCCEEECcCCc
Confidence 578888888888874
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-27 Score=233.60 Aligned_cols=252 Identities=15% Similarity=0.080 Sum_probs=130.3
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
+|+.|+++++.+.+.....+..+++|++|+++++. +...+ ..+.. +++|++|+++++...... ...+..+++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp-~~l~~-l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELP-SGLVG-LSTLKKLVLSANKFENLC--QISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCC-SSCCS-CTTCCEEECTTCCCSBGG--GGCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCC-hhhcc-cccCCEEECccCCcCcCc--hhhhhccCcCCE
Confidence 45555666665554444456778999999999853 44221 12333 799999999988743221 122456788888
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhH--HHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
|+++++..........+..+++|+.|++++|.+.... ...+. .+++|++|+++++ .+... .+..+..+++|++|+
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYN-EPLSL-KTEAFKECPQLELLD 406 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSC-SCEEE-CTTTTTTCTTCSEEE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCC-cCCcC-CHHHhcCCccCCeEE
Confidence 8888774332222334556667777777776655432 22222 4556666666553 22111 111223344455555
Q ss_pred cCCCCC------------------------CCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHH--HHHhcCccCCeeeec
Q 012001 361 ITCCRK------------------------ITYASINSITKTCTSLTSLRMECCKLVSWEAFV--LIGQQCQYLEELDIT 414 (473)
Q Consensus 361 l~~~~~------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~ 414 (473)
++++.. ++.... .....+++|+.|++++|. +++..+. .....+++|+.|+++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT-TTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECT
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH-HHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECC
Confidence 544331 221111 111234555555555543 2221110 111245566666666
Q ss_pred ccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+|.+++.....+..+++|+.|++++| .++...... ...+++| +|++++|.
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEA-LSHLKGI-YLNLASNH 534 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGG-GTTCCSC-EEECCSSC
T ss_pred CCccCccChhhhccccCCCEEECCCC-ccCcCChhH-hCccccc-EEECcCCc
Confidence 66555555455555666666666666 555432222 2255566 66666553
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-28 Score=243.14 Aligned_cols=254 Identities=20% Similarity=0.160 Sum_probs=157.7
Q ss_pred CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCc-c
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD-Y 279 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~ 279 (473)
+++|++|++++|.+.+.....+.++++|++|+++++...+......+.. +++|++|+++++...... ...+..++ +
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~ 369 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK-MRGLKVLDLSFNEFSGEL--PESLTNLSAS 369 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT-CTTCCEEECCSSEEEECC--CTTHHHHTTT
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc-CCCCCEEeCcCCccCccc--cHHHHhhhcC
Confidence 3566666666665555555555666666666666643211222222333 666777777665421110 00111223 6
Q ss_pred cceeeccccccCchhHHHhhhC--CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHN--FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
|+.|+++++. +....+..+.. +++|+.|++++|.+.+..+..+. .+++|+.|+++++ .++.. ++..+..+++|+
T Consensus 370 L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~ 445 (768)
T 3rgz_A 370 LLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFN-YLSGT-IPSSLGSLSKLR 445 (768)
T ss_dssp CSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSS-EEESC-CCGGGGGCTTCC
T ss_pred CcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCC-cccCc-ccHHHhcCCCCC
Confidence 7777776653 22233333333 66788888888876655444444 6788889988874 33211 233356778899
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.|++++|. ++.. +......+++|+.|++++|. ++......+ ..+++|+.|++++|.+++..+..++.+++|+.|++
T Consensus 446 ~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 446 DLKLWLNM-LEGE-IPQELMYVKTLETLILDFND-LTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp EEECCSSC-CCSC-CCGGGGGCTTCCEEECCSSC-CCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred EEECCCCc-ccCc-CCHHHcCCCCceEEEecCCc-ccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 99998876 3321 11222468899999998865 442222223 37899999999999988877778888999999999
Q ss_pred CCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 438 GICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++| .++. .++.....+++|++|++++|+
T Consensus 522 ~~N-~l~~-~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 522 SNN-SFSG-NIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CSS-CCEE-ECCGGGGGCTTCCEEECCSSE
T ss_pred CCC-cccC-cCCHHHcCCCCCCEEECCCCc
Confidence 999 7764 234445588999999999885
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=196.34 Aligned_cols=237 Identities=20% Similarity=0.196 Sum_probs=134.0
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|+++++.+.+ +..+..+++|+.|++++|....... .+.. +++|++|+++++....... +..+++
T Consensus 108 ~l~~L~~L~l~~n~i~~--~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~-l~~L~~L~l~~~~~~~~~~----~~~l~~ 178 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS--PLSN-MTGLNYLTVTESKVKDVTP----IANLTD 178 (347)
T ss_dssp TCTTCSEEECTTSCCCC--CGGGTTCTTCCEEECTTCTTCCCCG--GGTT-CTTCCEEECCSSCCCCCGG----GGGCTT
T ss_pred CCCcCCEEECcCCcccC--chhhccCCceeEEECCCCCCccccc--chhh-CCCCcEEEecCCCcCCchh----hccCCC
Confidence 44555555555554432 2224455555555555543333211 1222 5556666655554222211 344566
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++... .. ..+..+++|+.|++.++.+.+... + ..+++|++|++++| .+++.. . +..+++|++|
T Consensus 179 L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L 248 (347)
T 4fmz_A 179 LYSLSLNYNQIE-DI--SPLASLTSLHYFTAYVNQITDITP--V-ANMTRLNSLKIGNN-KITDLS--P-LANLSQLTWL 248 (347)
T ss_dssp CSEEECTTSCCC-CC--GGGGGCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEE
T ss_pred CCEEEccCCccc-cc--ccccCCCccceeecccCCCCCCch--h-hcCCcCCEEEccCC-ccCCCc--c-hhcCCCCCEE
Confidence 666666655321 11 115566667777777666554332 2 25667777777764 333211 1 4566777777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
++++|. ++.. . ....+++|+.|++++|. +++. .. ...+++|+.|++++|.+++.....+..+++|+.|++++
T Consensus 249 ~l~~n~-l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 249 EIGTNQ-ISDI--N-AVKDLTKLKMLNVGSNQ-ISDI--SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ECCSSC-CCCC--G-GGTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred ECCCCc-cCCC--h-hHhcCCCcCEEEccCCc-cCCC--hh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 777664 4332 1 12457778888887764 4332 22 23778888888888888777777777788888888888
Q ss_pred CCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 440 CSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
| .++.. .. ...+++|++|++++|+
T Consensus 321 n-~l~~~--~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 N-HITDI--RP-LASLSKMDSADFANQV 344 (347)
T ss_dssp S-SCCCC--GG-GGGCTTCSEESSSCC-
T ss_pred C-ccccc--cC-hhhhhccceeehhhhc
Confidence 8 66642 22 4478888888888775
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-26 Score=220.90 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=119.7
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
+++++|+++++. +...... ....+++|++|+++++. +.......+ ..+++|++|+++++ .+...+...++.++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHG---DLRACANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC-CCEECSS---TTSSCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc-cCccChh---hhhcCCcccEEECCCCC-cCccChhhc-cccccCCEEECCCC-ccCccCHHHhccCC
Confidence 689999999874 3322111 23667899999999875 332222223 37899999999988 46665556788999
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
+|++|+++++. +...+.......+++|++|+++++..++..+... ...+++|++|+++++.+.......+..+++|++
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCcccccChhhhhccccCce
Confidence 99999999875 3321111123348899999998875444332212 236889999999999887766677777778888
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCcEEecCCCC
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (473)
|+++++. ...... .+...+++|+.|+++++.
T Consensus 177 L~l~~n~-~~~~~~-~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 177 LTLHLSE-SAFLLE-IFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEECSB-STTHHH-HHHHSTTTBSEEEEESCB
T ss_pred EecccCc-ccccch-hhHhhcccccEEEccCCc
Confidence 8877643 332222 222336677777776554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=191.41 Aligned_cols=217 Identities=17% Similarity=0.160 Sum_probs=137.3
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|+.|++++|... ..+..+..+++|++|+++++....... +.. +++|+.|+++++....... +..+++
T Consensus 130 ~l~~L~~L~l~~n~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~-l~~L~~L~l~~n~l~~~~~----~~~l~~ 200 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP---IAN-LTDLYSLSLNYNQIEDISP----LASLTS 200 (347)
T ss_dssp TCTTCCEEECTTCTTC-CCCGGGTTCTTCCEEECCSSCCCCCGG---GGG-CTTCSEEECTTSCCCCCGG----GGGCTT
T ss_pred cCCceeEEECCCCCCc-ccccchhhCCCCcEEEecCCCcCCchh---hcc-CCCCCEEEccCCccccccc----ccCCCc
Confidence 4555666666555322 123335556666666666543221111 222 6666666666654322211 445667
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|+.|+++++.... ... +..+++|+.|++++|.+.+... + ..+++|++|+++++ .+++. ..+..+++|++|
T Consensus 201 L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L 270 (347)
T 4fmz_A 201 LHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDLSP--L-ANLSQLTWLEIGTN-QISDI---NAVKDLTKLKML 270 (347)
T ss_dssp CCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--G-TTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEE
T ss_pred cceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCCcc--h-hcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEE
Confidence 7777776653221 111 5677788888888887665433 2 36788888888874 44432 235567899999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
++++|. +++. . ....+++|+.|++++|. ++......+. .+++|+.|++++|.+++... +..+++|+.|++++
T Consensus 271 ~l~~n~-l~~~--~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 271 NVGSNQ-ISDI--S-VLNNLSQLNSLFLNNNQ-LGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSC-CCCC--G-GGGGCTTCSEEECCSSC-CCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSC
T ss_pred EccCCc-cCCC--h-hhcCCCCCCEEECcCCc-CCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhccceeehhh
Confidence 998875 5543 2 23578999999999975 6666666565 89999999999999888654 77899999999999
Q ss_pred CCCcc
Q 012001 440 CSNIT 444 (473)
Q Consensus 440 ~~~l~ 444 (473)
| .++
T Consensus 343 N-~i~ 346 (347)
T 4fmz_A 343 Q-VIK 346 (347)
T ss_dssp C----
T ss_pred h-ccc
Confidence 9 554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=199.84 Aligned_cols=341 Identities=19% Similarity=0.193 Sum_probs=204.3
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
++++.|++.++.... ++....+++|++|+++++.- .... . ...+++|++|+++++. +.+... +..++
T Consensus 46 ~~l~~L~l~~~~i~~------l~~~~~l~~L~~L~Ls~n~l-~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS------IDGVEYLNNLTQINFSNNQL-TDIT--P-LKNLTKLVDILMNNNQ-IADITP--LANLT 112 (466)
T ss_dssp HTCCEEECCSSCCCC------CTTGGGCTTCCEEECCSSCC-CCCG--G-GTTCTTCCEEECCSSC-CCCCGG--GTTCT
T ss_pred ccccEEecCCCCCcc------CcchhhhcCCCEEECCCCcc-CCch--h-hhccccCCEEECCCCc-cccChh--hcCCC
Confidence 466777776653211 11224467777777777642 2211 1 3367777888777763 433321 66777
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
+|++|++.++. +.... . ...+++|++|+++++. +...+ . ...+++|+.|++.+. +. ....+.++++|++
T Consensus 113 ~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~~-~~--~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSNT-ISDIS--A-LSGLTSLQQLSFGNQ-VT--DLKPLANLTTLER 181 (466)
T ss_dssp TCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEEE-ECCCG--G-GTTCTTCSEEEEEES-CC--CCGGGTTCTTCCE
T ss_pred CCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCCc-cCCCh--h-hccCCcccEeecCCc-cc--CchhhccCCCCCE
Confidence 78888777764 33222 1 2347777887777653 22221 1 346777777777542 22 2334667777888
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEe
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 310 (473)
|+++++. +... ..+.. +++|++|+++++....... +..+++|+.|+++++.... ...+..+++|+.|++
T Consensus 182 L~l~~n~-l~~~--~~l~~-l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 182 LDISSNK-VSDI--SVLAK-LTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDL 250 (466)
T ss_dssp EECCSSC-CCCC--GGGGG-CTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEEC
T ss_pred EECcCCc-CCCC--hhhcc-CCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc---chhhhcCCCCCEEEC
Confidence 8777753 3322 12333 7778888877765332222 3456778888877764222 134667778888888
Q ss_pred cCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012001 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (473)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (473)
++|.+..... + ..+++|++|+++++ .++.. .. +..+++|+.|++++|. ++.... ...+++|+.|++++|
T Consensus 251 ~~n~l~~~~~--~-~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 251 ANNQISNLAP--L-SGLTKLTELKLGAN-QISNI--SP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSSCCCCCGG--G-TTCTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSS
T ss_pred CCCccccchh--h-hcCCCCCEEECCCC-ccCcc--cc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCC
Confidence 8877654433 2 26777888888774 34321 11 4567788888887765 332211 346788888888876
Q ss_pred CCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 391 KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
. +++... + ..+++|+.|++++|.+++. ..++.+++|+.|++++| .+++.. . ...+++|++|++++|+
T Consensus 320 ~-l~~~~~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 320 N-ISDISP--V-SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLT--P-LANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CSCCGG--G-GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCG--G-GTTCTTCCEEECCCEE
T ss_pred c-CCCchh--h-ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccc--h-hhcCCCCCEEeccCCc
Confidence 5 333221 2 3778888888888777764 35667788888888888 666432 2 4477888888887764
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-27 Score=228.82 Aligned_cols=208 Identities=17% Similarity=0.112 Sum_probs=126.0
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++|+.|+++++...........+..+++|++|+++++.. . ..+..+..+++|+.|++++|.+...........+++|
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-I-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-E-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-c-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 4555555555544221111122345566777777766532 1 1234556677777777777765544331122266788
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
+.|++++| .+... .+..+..+++|++|++++|. +++.........+++|+.|++++|. ++......+. .+++|++
T Consensus 427 ~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~ 501 (606)
T 3vq2_A 427 LYLDISYT-NTKID-FDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-TLHRLQL 501 (606)
T ss_dssp CEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCE
T ss_pred CEEECcCC-CCCcc-chhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccChhhhc-ccccCCE
Confidence 88888774 33221 22234567888888888765 4332122223467888888888864 4433222232 7788888
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCc-cCCeeecCCCCC
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS-MLKELDLYRFVT 468 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~~ 468 (473)
|++++|.+++..+..+..+++|+.|++++| +++. ++.....++ +|++|++++|+-
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~--~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIET--SKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCC--EESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcc--cCHhHhhhcccCcEEEccCCCc
Confidence 888888888877777778888888888888 7773 333344665 588888888763
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-26 Score=215.09 Aligned_cols=355 Identities=14% Similarity=0.118 Sum_probs=211.9
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
+++++|+++++. +...... ....+++|++|+++++....... ...+..+++|++|+++++. +.......+.+++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNET---SFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC-CCEECTT---TTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCT-TCEECTTTTTTCT
T ss_pred CccCEEEecCCc-cCcCChh---HhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCc-cCccChhhccCcc
Confidence 578899988764 2222111 23567888999988774211111 1223368889999998874 4444345677888
Q ss_pred CCCEEecccCcccCHHHHHH-HHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccC--cc
Q 012001 151 NLERLWLARCKLITDLGIGR-IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL--QY 227 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~ 227 (473)
+|++|++.++. +....+.. ....+++|++|+++++. +.......+...+++|++|++++|.+.......+..+ ++
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 89999988875 33322221 23347888888888764 3332222223477888899888887776655555543 67
Q ss_pred cCeeeccCCCCCChHH--------HHHHHhcCCCCcEEecCCCCccchHHHHHHHh--cCcccceeeccccccCchhH--
Q 012001 228 LEDLVLEGCHGIDDDG--------LASVEYSCKSLKALNLSKCQNISHVGLSSLIK--GADYLQQLILAYSFWVSADL-- 295 (473)
Q Consensus 228 L~~L~l~~~~~~~~~~--------~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-- 295 (473)
|+.++++++.. .... ...+.. +++|++|+++++. +.......+.. ..++|+.|+++++.......
T Consensus 182 L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~-~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 182 FTLLRLSSITL-QDMNEYWLGWEKCGNPFK-NTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp EEEEECTTCBC-TTCSTTCTTHHHHCCTTT-TCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccCcc-cccchhhccccccccccc-cceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccch
Confidence 88888877532 2111 011112 4788888888876 33322222222 24788888887663222100
Q ss_pred -------HHhhh--CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCC
Q 012001 296 -------SKCLH--NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366 (473)
Q Consensus 296 -------~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 366 (473)
...+. ..++|+.|++++|.+.......+. .+++|++|+++++ .+++. .+..+..+++|++|++++|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQN-EINKI-DDNAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcc-cCCCCCEEECCCC-ccccc-ChhHhcCcccCCEEECCCCc-
Confidence 00111 235788888888877655444443 6778888888774 44432 12234566788888887764
Q ss_pred CCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 367 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
++...... ...+++|+.|++++|. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++| .++
T Consensus 335 l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~ 408 (455)
T 3v47_A 335 LGSIDSRM-FENLDKLEVLDLSYNH-IRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD 408 (455)
T ss_dssp CCEECGGG-GTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred cCCcChhH-hcCcccCCEEECCCCc-ccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCC-Ccc
Confidence 43322212 2457788888887754 4433222233 6778888888888777766555667788888888877 443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-24 Score=209.71 Aligned_cols=366 Identities=16% Similarity=0.104 Sum_probs=216.7
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
+++++|+++++.. ....... ...+++|++|+++++. +...... .+..+++|++|+++++ .+...+.. .++
T Consensus 21 ~~L~~L~Ls~n~i-~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYI-SELWTSD---ILSLSKLRILIISHNR-IQYLDIS-VFKFNQELEYLDLSHN-KLVKISCH---PTV 90 (520)
T ss_dssp TTCSEEECCSSCC-CCCCHHH---HTTCTTCCEEECCSSC-CCEEEGG-GGTTCTTCCEEECCSS-CCCEEECC---CCC
T ss_pred ccccEEECCCCcc-cccChhh---ccccccccEEecCCCc-cCCcChH-HhhcccCCCEEecCCC-ceeecCcc---ccC
Confidence 6899999998752 2222222 2557899999998875 3322222 2347899999999988 45543322 789
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC--cEEeeccccC--CCCcccccc---
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (473)
+|++|+++++. +....+......+++|++|+++++. +.... ...+++| +.|++++|.+ ....+..+.
T Consensus 91 ~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 91 NLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cchhh----ccccccceeeEEEeecccccccccccccccccc
Confidence 99999999875 3321121122348999999999864 44422 2366777 9999998876 333322222
Q ss_pred -----------------------cCcccCeeeccCCCC---CC--hHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHh
Q 012001 224 -----------------------KLQYLEDLVLEGCHG---ID--DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275 (473)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~---~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (473)
.+++|+.++++++.. .. ...+..+.. +++|+.|++.++. +....+..+..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-l~~~~~~~~~~ 242 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT-NPKLSNLTLNNIE-TTWNSFIRILQ 242 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG-CTTCCEEEEEEEE-EEHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc-ccchhhccccccc-cCHHHHHHHHH
Confidence 356667777666320 00 011112222 5566666655443 22221111111
Q ss_pred --cCcccceeeccccccC---ch---------------------------hHHHh----------------------hhC
Q 012001 276 --GADYLQQLILAYSFWV---SA---------------------------DLSKC----------------------LHN 301 (473)
Q Consensus 276 --~~~~L~~L~l~~~~~~---~~---------------------------~~~~~----------------------l~~ 301 (473)
..++|++|+++++... .. ..... ...
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 1234444444433210 00 00000 146
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCCh-HHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTD-EELSFVVQSHKELRKLDITCCRKITY-ASINSITKTC 379 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 379 (473)
+++|+.|++++|.+.+..+..+. .+++|+.|+++++ .++. ..++..+..+++|++|+++++. ++. ... .....+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~-~~~~~l 398 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK-GDCSWT 398 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG-CSCCCC
T ss_pred CCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCccccc-chhccC
Confidence 67888888888877764444443 6778888888874 4553 2345566777888888888765 332 211 112346
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcC-ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHH-HHhcCcc
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-VGSTCSM 457 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~ 457 (473)
++|+.|++++|. ++..... .+ ++|+.|++++|.++.. ...+..+++|+.|++++| +++. ++. ....+++
T Consensus 399 ~~L~~L~Ls~N~-l~~~~~~----~l~~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~ 469 (520)
T 2z7x_B 399 KSLLSLNMSSNI-LTDTIFR----CLPPRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASN-QLKS--VPDGIFDRLTS 469 (520)
T ss_dssp TTCCEEECCSSC-CCGGGGG----SCCTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCC--CCTTTTTTCTT
T ss_pred ccCCEEECcCCC-CCcchhh----hhcccCCEEECCCCccccc-chhhhcCCCCCEEECCCC-cCCc--cCHHHhccCCc
Confidence 788888888855 4433222 23 6888888888888743 344557888999999988 7774 332 2457888
Q ss_pred CCeeecCCCC
Q 012001 458 LKELDLYRFV 467 (473)
Q Consensus 458 L~~L~l~~c~ 467 (473)
|++|++++|+
T Consensus 470 L~~L~l~~N~ 479 (520)
T 2z7x_B 470 LQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCC
Confidence 9999988876
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=192.12 Aligned_cols=326 Identities=21% Similarity=0.176 Sum_probs=240.3
Q ss_pred hccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHH
Q 012001 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146 (473)
Q Consensus 67 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 146 (473)
+..+++|++|+++++.. .+.. ....+++|++|+++++.-..... ...+++|++|+++++ .+.+.+ .+
T Consensus 64 ~~~l~~L~~L~Ls~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n-~l~~~~--~~ 130 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQL-TDIT-----PLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNN-QITDID--PL 130 (466)
T ss_dssp GGGCTTCCEEECCSSCC-CCCG-----GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCCG--GG
T ss_pred hhhhcCCCEEECCCCcc-CCch-----hhhccccCCEEECCCCccccChh----hcCCCCCCEEECCCC-CCCCCh--HH
Confidence 67789999999998753 2211 23667999999999875322222 448999999999998 455543 37
Q ss_pred HcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCc
Q 012001 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQ 226 (473)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (473)
..+++|++|++.++. +.... . ...+++|+.|++.+. +.... . ...+++|+.|+++++.+.+ +..+..++
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~~--~~~~~--~-~~~l~~L~~L~l~~n~l~~--~~~l~~l~ 199 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDIS--A-LSGLTSLQQLSFGNQ--VTDLK--P-LANLTTLERLDISSNKVSD--ISVLAKLT 199 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCCG--G-GTTCTTCSEEEEEES--CCCCG--G-GTTCTTCCEEECCSSCCCC--CGGGGGCT
T ss_pred cCCCCCCEEECCCCc-cCCCh--h-hccCCcccEeecCCc--ccCch--h-hccCCCCCEEECcCCcCCC--ChhhccCC
Confidence 889999999999875 33321 2 334899999999753 22211 1 4588999999999998764 45678899
Q ss_pred ccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCC
Q 012001 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (473)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (473)
+|++|+++++. +..... +.. +++|+.|+++++...... .+..+++|+.|+++++... ... .+..+++|+
T Consensus 200 ~L~~L~l~~n~-l~~~~~--~~~-l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~ 268 (466)
T 1o6v_A 200 NLESLIATNNQ-ISDITP--LGI-LTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQIS-NLA--PLSGLTKLT 268 (466)
T ss_dssp TCSEEECCSSC-CCCCGG--GGG-CTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCC-CCG--GGTTCTTCS
T ss_pred CCCEEEecCCc-cccccc--ccc-cCCCCEEECCCCCcccch----hhhcCCCCCEEECCCCccc-cch--hhhcCCCCC
Confidence 99999999864 333221 344 899999999988743321 2566899999999988533 222 278899999
Q ss_pred eeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEE
Q 012001 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386 (473)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (473)
.|++++|.+..... +. .+++|+.|+++++ .+++. .. +..+++|+.|++++|. +++... ...+++|+.|+
T Consensus 269 ~L~l~~n~l~~~~~--~~-~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~ 337 (466)
T 1o6v_A 269 ELKLGANQISNISP--LA-GLTALTNLELNEN-QLEDI--SP-ISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLF 337 (466)
T ss_dssp EEECCSSCCCCCGG--GT-TCTTCSEEECCSS-CCSCC--GG-GGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEE
T ss_pred EEECCCCccCcccc--cc-CCCccCeEEcCCC-cccCc--hh-hcCCCCCCEEECcCCc-CCCchh---hccCccCCEeE
Confidence 99999998876443 33 7899999999985 45432 22 5688999999999986 443322 35799999999
Q ss_pred ccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
+++|. +++. ..+. .+++|+.|++++|.+++... +..+++|+.|++++| .++.
T Consensus 338 l~~n~-l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~~~~ 389 (466)
T 1o6v_A 338 FYNNK-VSDV--SSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-AWTN 389 (466)
T ss_dssp CCSSC-CCCC--GGGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE-EEEC
T ss_pred CCCCc-cCCc--hhhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC-cccC
Confidence 99975 5443 2333 89999999999999988764 778999999999999 6664
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-26 Score=225.24 Aligned_cols=183 Identities=16% Similarity=0.059 Sum_probs=106.6
Q ss_pred CcccceeeccccccCch-hHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 277 ADYLQQLILAYSFWVSA-DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
+++|++|+++++..... ..+..+..+++|+.|++++|.+...... + ..+++|++|+++++ .+........+..+++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E-ETCTTCCEEECTTS-EEESCTTSCTTTTCTT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c-cccCCCCEEEccCC-ccccccchhhhhcCCC
Confidence 44555555544421110 0133445556666666666554332211 1 14566666666653 2221101112446678
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCee
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (473)
|++|++++|. ++... ......+++|+.|++++|. +++..+......+++|+.|++++|.+++.....+..+++|+.|
T Consensus 423 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 423 LIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 8888887764 32211 1122457888888888865 3322222223377889999998888888777778888899999
Q ss_pred ecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 436 KLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++++| .++... +.....+++|++|++++|+
T Consensus 500 ~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASN-QLKSVP-DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred eCCCC-cCCCCC-HHHhhcccCCcEEEecCCc
Confidence 99988 777532 2334478899999998875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-25 Score=221.24 Aligned_cols=112 Identities=18% Similarity=0.088 Sum_probs=66.1
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC
Q 012001 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (473)
..+++|+.|++++|. ++... ......+++|+.|++++|. +++..+......+++|+.|++++|.+++.....+..++
T Consensus 421 ~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTN-TKIDF-DGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hccccCCEEECcCCC-CCccc-hhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 345566666666554 22111 1112345667777776653 33221222223667778888877777776666677778
Q ss_pred CCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 431 KLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+|+.|++++| .++... +.....+++|++|++++|.
T Consensus 498 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 498 RLQLLNMSHN-NLLFLD-SSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TCCEEECCSS-CCSCEE-GGGTTTCTTCCEEECTTSC
T ss_pred cCCEEECCCC-cCCCcC-HHHccCCCcCCEEECCCCc
Confidence 8888888888 666422 3333467788888888775
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-22 Score=178.45 Aligned_cols=247 Identities=18% Similarity=0.238 Sum_probs=199.6
Q ss_pred CCCcEEeeccccCCCCcccccccC--cccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKL--QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
..++.++++++.+.+ ..+..+ ++++.+++.++. +...... +.. +++|++|+++++. +...++...+..+++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~~~-~~~L~~L~L~~~~-l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSF-MDQPLAE-HFS-PFRVQHMDLSNSV-IEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCE-ECSCCCS-CCC-CBCCCEEECTTCE-ECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCcc-ccccchh-hcc-CCCCCEEEccCCC-cCHHHHHHHHhhCCC
Confidence 458899999887653 333444 788999888743 2221111 223 7899999999887 666667778888999
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCC-cCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC-CCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK-ELR 357 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~ 357 (473)
|++|+++++ .+.+..+..+..+++|+.|++++| .+++..+..+...+++|++|++++|..+++.++...+..++ +|+
T Consensus 120 L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999998 466677788889999999999999 68887777766689999999999976888888888888999 999
Q ss_pred EEecCCCC-CCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhcCCCCCee
Q 012001 358 KLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 358 ~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L 435 (473)
+|++++|. .+++..+......+++|+.|++++|..+++..+..+. .+++|+.|++++| .+++.++..++++++|+.|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 99999986 5887888888788999999999998878877777665 8899999999998 7888887788889999999
Q ss_pred ecCCCCCcchHHHHHHHhcCccCC
Q 012001 436 KLGICSNITDEGLKHVGSTCSMLK 459 (473)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~ 459 (473)
++++| +++.++..+.+.+++|+
T Consensus 278 ~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 278 QVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp ECTTS--SCTTCHHHHHHHSTTSE
T ss_pred eccCc--cCHHHHHHHHhhCcceE
Confidence 99998 88777887775566665
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-24 Score=215.63 Aligned_cols=308 Identities=18% Similarity=0.147 Sum_probs=164.9
Q ss_pred HhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHH
Q 012001 66 TSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAA 145 (473)
Q Consensus 66 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 145 (473)
.+..+++|++|+++++.. ...... ....+++|++|+++++. +...... .+..+++|++|+++++ .+...+...
T Consensus 44 ~~~~l~~L~~L~Ls~n~l-~~~~~~---~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTI-SKLEPE---LCQKLPMLKVLNLQHNE-LSQLSDK-TFAFCTNLTELHLMSN-SIQKIKNNP 116 (680)
T ss_dssp GGGGGTTCSEEECCSSCC-CCCCTT---HHHHCTTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSS-CCCCCCSCT
T ss_pred HHhCCCcCcEEECCCCcc-CccCHH---HHhcccCcCEEECCCCc-cCccChh-hhccCCCCCEEECCCC-ccCccChhH
Confidence 455667777777766531 111111 12344677777776653 2211111 1236777777777766 344333334
Q ss_pred HHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHH-HhhCCCCcEEeeccccCCCCccccccc
Q 012001 146 IAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV-ALKCQEIRTLDLSYLPITEKCLPPVVK 224 (473)
Q Consensus 146 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~ 224 (473)
+.++++|++|++.++.. .......+ ..+++|++|+++++. +.......+ ...+++|+.|+++++.+.......+..
T Consensus 117 ~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGL-SSTKLGTQ-VQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp TTTCTTCCEEECCSSCC-SCCCCCSS-SCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred ccccCCCCEEECCCCcc-cccCchhh-cccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 66677777777777542 22111111 236777888777753 222222221 124577888888887776655566666
Q ss_pred CcccCeeeccCCCCCChHHHHHHHh--cCCCCcEEecCCCCccchHHHHHHHhcC--cccceeeccccccCchhHHHhhh
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEY--SCKSLKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLSKCLH 300 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~ 300 (473)
+++|+.+.+.++ .+.......+.. ..++|+.|+++++...... ...+..+ ++|+.|+++++. +....+..+.
T Consensus 194 l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~--~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~ 269 (680)
T 1ziw_A 194 IGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFA 269 (680)
T ss_dssp SSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC--TTTTGGGGGSCCCEEECTTSC-CCEECTTTTT
T ss_pred hhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccC--hhHhhccCcCCCCEEECCCCC-cCccCccccc
Confidence 777777777663 333333332221 1467888888776532211 0112223 348888887763 3334445667
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChH---HHHH----HHHhCCCCcEEecCCCCCCCHHHHH
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE---ELSF----VVQSHKELRKLDITCCRKITYASIN 373 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (473)
.+++|+.|++++|.+.......+. .+++|+.|++.++...... .++. .+..+++|++|+++++. ++....
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~- 346 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS- 346 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-
T ss_pred CcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-
Confidence 788888888888876654443333 5677777777653211100 0000 23456677777777654 332111
Q ss_pred HHHhcCCCCCEEEccCC
Q 012001 374 SITKTCTSLTSLRMECC 390 (473)
Q Consensus 374 ~~~~~~~~L~~L~l~~~ 390 (473)
.....+++|+.|++++|
T Consensus 347 ~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTTTTCTTCCEEECTTC
T ss_pred hHhccccCCcEEECCCC
Confidence 11234666777776654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-24 Score=203.97 Aligned_cols=357 Identities=15% Similarity=0.044 Sum_probs=241.1
Q ss_pred cCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
..++|++|+++++. +....... +..+++|++|+++++......+...+..+++|++|+++++. +.......+. .++
T Consensus 28 l~~~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFN-GLA 103 (455)
T ss_dssp CCTTCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTT-TCT
T ss_pred CCCccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhcc-Ccc
Confidence 34789999999875 33322222 34899999999999854334333567889999999999875 3332222233 389
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccc-cccCcccCeeeccCCCCCChHHHHHHHh-cCCCC
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCHGIDDDGLASVEY-SCKSL 254 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L 254 (473)
+|++|+++++..............+++|++|++++|.+....... +..+++|++|+++++. +.......+.. ..++|
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccc
Confidence 999999999753322222222457899999999999887665554 6789999999999853 33222222222 13789
Q ss_pred cEEecCCCCccchHH----HH--HHHhcCcccceeeccccccCchhHHHhhhC---CCCCCeeEecCCcCChhHH-----
Q 012001 255 KALNLSKCQNISHVG----LS--SLIKGADYLQQLILAYSFWVSADLSKCLHN---FPMLQSIKFEDCPVARSGI----- 320 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~----~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~----- 320 (473)
+.|+++++....... .. ......++|++|+++++. +....+..+.. .++|+.|+++++.......
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 999998876322110 00 012235789999999884 44444444443 4899999999874322110
Q ss_pred -----HHHH-hhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 012001 321 -----KAIG-NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS 394 (473)
Q Consensus 321 -----~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 394 (473)
..+. ...++|+.|+++++ .++.. .+..+..+++|++|+++++. ++...... ...+++|+.|++++|. ++
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~ 336 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKS-KIFAL-LKSVFSHFTDLEQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQNF-LG 336 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CC
T ss_pred ccCcccccccccccCceEEEecCc-ccccc-chhhcccCCCCCEEECCCCc-ccccChhH-hcCcccCCEEECCCCc-cC
Confidence 0000 03478999999984 45432 23345678999999999876 54332222 2468999999999965 54
Q ss_pred HHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
......+. .+++|+.|++++|.+++.....+..+++|++|++++| .++.... .....+++|++|++++|+
T Consensus 337 ~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CcChhHhc-CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence 43223333 7899999999999999887788889999999999999 8885322 234589999999999876
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-24 Score=217.33 Aligned_cols=330 Identities=18% Similarity=0.121 Sum_probs=175.1
Q ss_pred CCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHH-------HH
Q 012001 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVEL-------VA 198 (473)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------~~ 198 (473)
+|++|+++++. +.......+..+++|++|++.++. +.......+ ..+++|+.|++.++.......... ..
T Consensus 249 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 249 NLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC-BSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCEEECCCCC-cCccCcccccCcccccEeeCCCCc-cCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhc
Confidence 46666666652 333322345556666666666643 222111111 225666666665432111111000 11
Q ss_pred hhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCC---------------------------CCChHHHHHHHhcC
Q 012001 199 LKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH---------------------------GIDDDGLASVEYSC 251 (473)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------------------~~~~~~~~~l~~~~ 251 (473)
..+++|++|+++++.+.......+..+++|++|+++++. .+.......+.. +
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l 404 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-L 404 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-C
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-C
Confidence 245666666666666655444445556666666665532 111111111222 4
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCCh--hHHHHHHhhCCC
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR--SGIKAIGNWHGS 329 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~ 329 (473)
++|+.|+++++....... ...+..+++|++|+++++. +.......+..+++|+.|++.++.+.. ..+..+. .+++
T Consensus 405 ~~L~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~ 481 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRN 481 (680)
T ss_dssp TTCCEEECCSSCCEEECC-SGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTT
T ss_pred CCCCEEeCCCCcCccccC-cccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccc-cCCC
Confidence 555555555544211000 0113345556666665553 222233344556666666666665431 1112222 5677
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHH-------HHHhcCCCCCEEEccCCCCCCHHHHHHHH
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN-------SITKTCTSLTSLRMECCKLVSWEAFVLIG 402 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (473)
|+.|+++++ .++.. ....+..+++|++|+++++. ++..... .....+++|+.|+++++. ++......+
T Consensus 482 L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~- 556 (680)
T 1ziw_A 482 LTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF- 556 (680)
T ss_dssp CCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT-
T ss_pred CCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc-
Confidence 888888773 44321 12234567788888888765 4322110 012457888888888754 442211112
Q ss_pred hcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
..+++|+.|++++|.++......+..+++|+.|++++| .++......+...+++|++|++++||-
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc
Confidence 37888999999888888766666677889999999998 777544333433678899999988663
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-25 Score=216.57 Aligned_cols=349 Identities=15% Similarity=0.142 Sum_probs=224.7
Q ss_pred cccCCCccEEEcCCCccccHH----------------HHHHHhh--cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEe
Q 012001 95 SSWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLW 156 (473)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 156 (473)
...+++|++|+++++. +... .++.... .+++|++|+++++......+ ..+.++++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEE
Confidence 4567889999998875 3331 1333333 68899999998885444333 5677889999999
Q ss_pred cccCcccCH-HHHHHHHh-----cCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 157 LARCKLITD-LGIGRIAA-----CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 157 l~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
+.++..++. .-...+.. .+++|++|+++++. +...+.......+++|+.|++++|.+.+... .+..+++|+.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 998764554 22222222 24889999998864 3322221134578899999999988764444 7778889999
Q ss_pred eeccCCCCCChHHHHHHHhcCCC-CcEEecCCCCccchHHHHHHHhc--CcccceeeccccccCchhHHHhhh-------
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKG--ADYLQQLILAYSFWVSADLSKCLH------- 300 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~------- 300 (473)
|+++++. +... ...+.. +++ |+.|+++++... . ++..+.. +++|+.|+++++. +....+..+.
T Consensus 358 L~L~~N~-l~~l-p~~l~~-l~~~L~~L~Ls~N~l~-~--lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 358 LNLAYNQ-ITEI-PANFCG-FTEQVENLSFAHNKLK-Y--IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EECCSSE-EEEC-CTTSEE-ECTTCCEEECCSSCCS-S--CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCC
T ss_pred EECCCCc-cccc-cHhhhh-hcccCcEEEccCCcCc-c--cchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccc
Confidence 9998853 3311 112333 677 999999887632 2 1111222 3478899988874 4444444455
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHH-HHHh-------CCCCcEEecCCCCCCCHHHH
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSF-VVQS-------HKELRKLDITCCRKITYASI 372 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~-------~~~L~~L~l~~~~~~~~~~~ 372 (473)
.+++|+.|++++|.+.. .+..+...+++|++|+++++ .++. ++. .+.. +++|+.|+++++. ++. +
T Consensus 431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--l 503 (636)
T 4eco_A 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGN-MLTE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LTK--L 503 (636)
T ss_dssp CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSS-CCSB--CCSSSSEETTEECTTGGGCCEEECCSSC-CCB--C
T ss_pred cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCC-CCCC--cCHHHhccccccccccCCccEEECcCCc-CCc--c
Confidence 66789999999988773 33344436789999999884 4442 111 1111 1288999998875 552 2
Q ss_pred HHHHh--cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeec------ccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 373 NSITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT------ENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 373 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+.... .+++|+.|+++++. ++. ++.....+++|+.|+++ +|.+....+..+..+++|+.|++++| .++
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~ 579 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIR 579 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCC
T ss_pred ChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCC
Confidence 22222 67889999998855 443 22222378889999884 46666666667778889999999988 775
Q ss_pred hHHHHHHHhcCccCCeeecCCCCCc
Q 012001 445 DEGLKHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 445 ~~~~~~~~~~~~~L~~L~l~~c~~l 469 (473)
. ++.. -.++|++|++++|+-.
T Consensus 580 ~--ip~~--~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 580 K--VNEK--ITPNISVLDIKDNPNI 600 (636)
T ss_dssp B--CCSC--CCTTCCEEECCSCTTC
T ss_pred c--cCHh--HhCcCCEEECcCCCCc
Confidence 3 3322 2378888888888643
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-24 Score=214.19 Aligned_cols=348 Identities=15% Similarity=0.125 Sum_probs=224.6
Q ss_pred cccCCCccEEEcCCCccccHH----------------HHHHHhh--cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEe
Q 012001 95 SSWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLW 156 (473)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 156 (473)
...+++|++|+++++. +... .++.-.. .+++|++|+++++......+ ..+.++++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEE
Confidence 4566889999998875 3331 1333332 78899999998885444433 6688899999999
Q ss_pred cccCcccCH-H---HHHHHH---hcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 157 LARCKLITD-L---GIGRIA---ACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 157 l~~~~~~~~-~---~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
++++..++. . .+..+. ..+++|+.|+++++. +...+.......+++|+.|++++|.+. .++.+..+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcce
Confidence 998753544 1 122222 235689999998864 333222113457889999999999887 344777889999
Q ss_pred eeeccCCCCCChHHHHHHHhcCCC-CcEEecCCCCccchHHHHHHHhcC--cccceeeccccccCchhHH---Hhhh--C
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLS---KCLH--N 301 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~~l~--~ 301 (473)
.|+++++. +.. ....+.. +++ |+.|+++++... . ++..+... ++|+.|+++++.... ..+ ..+. .
T Consensus 599 ~L~Ls~N~-l~~-lp~~l~~-l~~~L~~L~Ls~N~L~-~--lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 599 DLKLDYNQ-IEE-IPEDFCA-FTDQVEGLGFSHNKLK-Y--IPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYK 671 (876)
T ss_dssp EEECCSSC-CSC-CCTTSCE-ECTTCCEEECCSSCCC-S--CCSCCCTTCSSCEEEEECCSSCTTT-TSSSCSSCTTTCC
T ss_pred EEECcCCc-ccc-chHHHhh-ccccCCEEECcCCCCC-c--CchhhhccccCCCCEEECcCCcCCC-ccccchhhhcccc
Confidence 99998853 432 1122333 677 999999987632 2 11222222 348889988874322 211 1122 3
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHH--------HhCCCCcEEecCCCCCCCHHHHH
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV--------QSHKELRKLDITCCRKITYASIN 373 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~ 373 (473)
+++|+.|++++|.+.. .+..+...+++|+.|+++++ .++. ++... ..+++|+.|++++|. ++. ++
T Consensus 672 ~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~--lp 744 (876)
T 4ecn_A 672 GINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN-LMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS--LS 744 (876)
T ss_dssp CCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC-CCSC--CCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC--CC
T ss_pred CCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC-cCCc--cChHHhccccccccccCCccEEECCCCC-Ccc--ch
Confidence 4589999999998873 34444447889999999884 4441 22111 122389999998875 552 22
Q ss_pred HHHh--cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc------cccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 374 SITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE------NEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 374 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
.... .+++|+.|++++|. ++. ++.....+++|+.|++++ |.+....+..+..+++|+.|++++| .++.
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~ 820 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK 820 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred HHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc
Confidence 2223 67899999998865 443 222233788999999876 6666666667778899999999999 7753
Q ss_pred HHHHHHHhcCccCCeeecCCCCCc
Q 012001 446 EGLKHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 446 ~~~~~~~~~~~~L~~L~l~~c~~l 469 (473)
++.. -.++|+.|++++|+-.
T Consensus 821 --Ip~~--l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 821 --VDEK--LTPQLYILDIADNPNI 840 (876)
T ss_dssp --CCSC--CCSSSCEEECCSCTTC
T ss_pred --cCHh--hcCCCCEEECCCCCCC
Confidence 3322 2468999999988754
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-24 Score=206.05 Aligned_cols=367 Identities=14% Similarity=0.103 Sum_probs=206.9
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
++++.|+++++.- ...... ....+++|++|+++++. +....... +..+++|++|+++++. +...+.. .++
T Consensus 52 ~~L~~L~Ls~N~i-~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~---~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSI-SELRMP---DISFLSELRVLRLSHNR-IRSLDFHV-FLFNQDLEYLDVSHNR-LQNISCC---PMA 121 (562)
T ss_dssp TTCCEEECCSSCC-CCCCGG---GTTTCTTCCEEECCSCC-CCEECTTT-TTTCTTCCEEECTTSC-CCEECSC---CCT
T ss_pred CCcCEEECCCCCc-cccChh---hhccCCCccEEECCCCC-CCcCCHHH-hCCCCCCCEEECCCCc-CCccCcc---ccc
Confidence 6788888887642 211111 23556788888887764 33222222 3367888888888773 4443322 678
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC--cEEeeccccC--CCCcccccc---
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (473)
+|++|+++++. +...........+++|++|+++++. +....+ ..+++| +.|+++++.+ .......+.
T Consensus 122 ~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 122 SLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred cCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccCch----hhhhhceeeEEEeecccccccccCcccccccC
Confidence 88888888764 3322211122237888888888753 333222 244555 8888887766 333222222
Q ss_pred -----------------------cCcccCeeeccCCCCCC---hHHHHHHHhcCCCCcEEecCCCCccchHHHHHHH--h
Q 012001 224 -----------------------KLQYLEDLVLEGCHGID---DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI--K 275 (473)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~ 275 (473)
.+++|+.++++++.... ......+.. .++|+.+++..+. +....+..+. .
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~-l~~L~~L~L~~~~-l~~~~~~~~~~~~ 273 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR-GPTLLNVTLQHIE-TTWKCSVKLFQFF 273 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS-CSSCEEEEEEEEE-ECHHHHHHHHHHH
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc-cCcceEEEecCCc-CcHHHHHHHHHhh
Confidence 34566666666532100 011122222 4555555554433 2221111111 1
Q ss_pred cCcccceeeccccccC---ch---------------------------hHHHh----------------------hhCCC
Q 012001 276 GADYLQQLILAYSFWV---SA---------------------------DLSKC----------------------LHNFP 303 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~---~~---------------------------~~~~~----------------------l~~~~ 303 (473)
..++|++|+++++... .. ..... ...++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 1234555554443211 00 00000 15677
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChH-HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE-ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
+|+.|++++|.+.+..+..+. .+++|+.|+++++ .++.. .++..+..+++|+.|+++++. ++..........+++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTC
T ss_pred CceEEECCCCccccchhhhhc-ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccC
Confidence 888888888887764444443 6788888888884 55531 234456677888888888775 3321011112356888
Q ss_pred CEEEccCCCCCCHHHHHHHHhcC-ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHH-HhcCccCCe
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHV-GSTCSMLKE 460 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~L~~ 460 (473)
+.|++++|. ++..... .+ ++|+.|++++|.++... ..+..+++|+.|++++| +++. ++.. ...+++|++
T Consensus 431 ~~L~l~~n~-l~~~~~~----~l~~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 431 LVLNLSSNM-LTGSVFR----CLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASN-QLKS--VPDGVFDRLTSLQY 501 (562)
T ss_dssp CEEECCSSC-CCGGGGS----SCCTTCSEEECCSSCCCCCC-TTTTSSCCCSEEECCSS-CCCC--CCTTSTTTCTTCCC
T ss_pred CEEECCCCC-CCcchhh----hhcCcCCEEECCCCcCcccC-hhhcCCCCCCEEECCCC-CCCC--CCHHHHhcCCCCCE
Confidence 888888855 5533222 33 58999999998887543 33447889999999998 7773 3332 457889999
Q ss_pred eecCCCC
Q 012001 461 LDLYRFV 467 (473)
Q Consensus 461 L~l~~c~ 467 (473)
|++++|+
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9998876
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=197.10 Aligned_cols=328 Identities=17% Similarity=0.141 Sum_probs=194.3
Q ss_pred cCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
..++|++|+++++. +.......+ ..+++|++|+++++ .+.......+..+++|++|+++++. +.......+. .++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGDL-RACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFG-PLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSSTT-SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHT-TCT
T ss_pred CCCCccEEECcCCc-cCccChhhh-hcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhc-cCC
Confidence 34799999999875 332222223 48999999999998 4655554668889999999999975 4443333344 499
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeecccc-CCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
+|++|+++++. +...+.......+++|++|++++|. +.......+..+++|++|+++++. +.......+.. +++|+
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKS-IRDIH 175 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTT-CSEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhc-cccCc
Confidence 99999999874 3322211223478999999999997 433333567789999999999853 44333334444 88999
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchh--HHHhhhCCCCCCeeEecCCcCChhHHHHHHh--------
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD--LSKCLHNFPMLQSIKFEDCPVARSGIKAIGN-------- 325 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------- 325 (473)
+|+++.+..... ...+...+++|+.|+++++...... .......+++|+.|++.++.+.+..+..+..
T Consensus 176 ~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 176 HLTLHLSESAFL--LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEECSBSTTH--HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred eEecccCccccc--chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 999998763221 1223456899999999876432210 0011123445555555555444443333321
Q ss_pred ------------------------------------------------------hCCCCCeEecCCCCCCChHHHH-HHH
Q 012001 326 ------------------------------------------------------WHGSLKELSLSKCSGVTDEELS-FVV 350 (473)
Q Consensus 326 ------------------------------------------------------~~~~L~~L~l~~~~~~~~~~~~-~~~ 350 (473)
..++|++|+++++ .+.. ++ .++
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~--ip~~~~ 330 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFL--VPCSFS 330 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCC--CCHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-cccc--CCHHHH
Confidence 1233444444432 2221 11 123
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHH--HhcCCCCCEEEccCCCCCCHHH-HHHHHhcCccCCeeeecccccChhhhhhhh
Q 012001 351 QSHKELRKLDITCCRKITYASINSI--TKTCTSLTSLRMECCKLVSWEA-FVLIGQQCQYLEELDITENEVNDEGLKSIS 427 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 427 (473)
..+++|++|+++++. ++....... ...+++|+.|++++|. ++... .......+++|+.|++++|.++.. +..+.
T Consensus 331 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~ 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQ 407 (549)
T ss_dssp HHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCC
T ss_pred hcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccC-Chhhc
Confidence 456777777777665 444322211 2356777777777754 43322 122333667777777777766632 22334
Q ss_pred cCCCCCeeecCCC
Q 012001 428 RCSKLSSLKLGIC 440 (473)
Q Consensus 428 ~~~~L~~L~l~~~ 440 (473)
.+++|++|++++|
T Consensus 408 ~~~~L~~L~Ls~N 420 (549)
T 2z81_A 408 WPEKMRFLNLSST 420 (549)
T ss_dssp CCTTCCEEECTTS
T ss_pred ccccccEEECCCC
Confidence 4555555555555
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-24 Score=213.30 Aligned_cols=328 Identities=13% Similarity=0.095 Sum_probs=225.2
Q ss_pred HhhcCCCCcEEEcCCCCcccHH-----------------HHHHHH--cCCCCCEEecccCcccCHHHHHHHHhcCCcCce
Q 012001 120 LTVNCRFLTEIDLSNGTEMGDA-----------------AAAAIA--EAKNLERLWLARCKLITDLGIGRIAACCRKLKL 180 (473)
Q Consensus 120 l~~~~~~L~~L~l~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 180 (473)
....+++|++|+++++. +... ....+. ++++|++|++.++......+ ..+ ..+++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~ 277 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFL-KALPEMQL 277 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTT-TTCSSCCE
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHH-hcCCCCCE
Confidence 34479999999999985 5551 234566 89999999999875433211 222 23899999
Q ss_pred eecccCCCCCHHHHHHHHh------hCCCCcEEeeccccCCCCccc--ccccCcccCeeeccCCCCCC-hHHHHHHHhcC
Q 012001 181 LCLKWCIRVTDLGVELVAL------KCQEIRTLDLSYLPITEKCLP--PVVKLQYLEDLVLEGCHGID-DDGLASVEYSC 251 (473)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~ 251 (473)
|+++++..++...+..... .+++|++|++++|.++ .... .+.++++|++|+++++. +. ... .+.. +
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--~~~~-l 352 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP--AFGS-E 352 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC-CEEECC--CCEE-E
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc-Cccchh--hhCC-C
Confidence 9999986466522222222 3499999999999887 4555 68899999999999854 33 222 3443 7
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcc-cceeeccccccCchhHHHhhhCC--CCCCeeEecCCcCChhHHHHHHh---
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADY-LQQLILAYSFWVSADLSKCLHNF--PMLQSIKFEDCPVARSGIKAIGN--- 325 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~--- 325 (473)
++|+.|+++++... .++..+..+++ |++|+++++. +. .++..+... ++|+.|++++|.+....+..+..
T Consensus 353 ~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 353 IKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 89999999988632 22223556778 9999999885 33 455555544 48999999999887654433320
Q ss_pred ---hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH------hcCCCCCEEEccCCCCCCHH
Q 012001 326 ---WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT------KTCTSLTSLRMECCKLVSWE 396 (473)
Q Consensus 326 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~ 396 (473)
.+++|+.|+++++ .++.. -..++..+++|++|+++++. ++......+. ..+++|+.|++++|. ++.
T Consensus 428 ~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~- 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK- 502 (636)
T ss_dssp SCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCB-
T ss_pred ccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCc-
Confidence 3468999999984 55421 12345568999999999875 4422111110 012299999999965 552
Q ss_pred HHHHHH--hcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCC-----CcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 397 AFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS-----NITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 397 ~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+.... ..+++|+.|++++|.++. .+..+..+++|+.|++++|. .+.. .++.....+++|++|++++|.-
T Consensus 503 -lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 503 -LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp -CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCC
T ss_pred -cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcCCCCCEEECCCCcC
Confidence 32222 278999999999999987 45677789999999996542 3332 2334445799999999999864
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-25 Score=222.17 Aligned_cols=162 Identities=16% Similarity=0.045 Sum_probs=74.1
Q ss_pred HhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHH-
Q 012001 66 TSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAA- 144 (473)
Q Consensus 66 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~- 144 (473)
.+..+++|+.|+++++......... ....+++|++|+++++. +.... +..+..+++|++|+++++. +.+....
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 116 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKE---AFRNLPNLRILDLGSSK-IYFLH-PDAFQGLFHLFELRLYFCG-LSDAVLKD 116 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTT---TTSSCTTCCEEECTTCC-CCEEC-TTSSCSCSSCCCEECTTCC-CSSCCSTT
T ss_pred HCcccccCeEEeCCCCCCccccCHH---HhcCCCCCCEEECCCCc-CcccC-HhHccCCcccCEeeCcCCC-CCcccccC
Confidence 3455666666666665322211111 12455667777776653 22111 1222356667777776663 3321111
Q ss_pred -HHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCC--CHHHHHHHHhhCCCCcEEeeccccCCCCcccc
Q 012001 145 -AIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRV--TDLGVELVALKCQEIRTLDLSYLPITEKCLPP 221 (473)
Q Consensus 145 -~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 221 (473)
.+..+++|++|+++++.. ...........+++|++|+++++... ....+..+. .++|+.|+++++.+.......
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp CCCSSCSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCCC
T ss_pred ccccccCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc--CCccceEECCCCccccccccc
Confidence 245566677777666542 22111111223666777776664321 111122111 145555555555444433333
Q ss_pred cccCcc------cCeeeccCC
Q 012001 222 VVKLQY------LEDLVLEGC 236 (473)
Q Consensus 222 l~~~~~------L~~L~l~~~ 236 (473)
+..+++ |+.|+++++
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSC
T ss_pred hhhcCCccccCceeEEecCCC
Confidence 333332 555555553
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-23 Score=206.69 Aligned_cols=327 Identities=14% Similarity=0.078 Sum_probs=223.0
Q ss_pred hhcCCCCcEEEcCCCCcccH-----------------HHHHHHH--cCCCCCEEecccCcccCHHHHHHHHhcCCcCcee
Q 012001 121 TVNCRFLTEIDLSNGTEMGD-----------------AAAAAIA--EAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181 (473)
Q Consensus 121 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 181 (473)
...+++|++|+++++. +.. .....++ ++++|++|++.+|......+ ..+ ..+++|+.|
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l-~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFL-YDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGG-GGCSSCCEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHH-hCCCCCCEE
Confidence 4479999999999985 554 1224444 89999999999876433222 223 348999999
Q ss_pred ecccCCCCCH--HH--HHHH---HhhCCCCcEEeeccccCCCCccc--ccccCcccCeeeccCCCCCChHHHHHHHhcCC
Q 012001 182 CLKWCIRVTD--LG--VELV---ALKCQEIRTLDLSYLPITEKCLP--PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCK 252 (473)
Q Consensus 182 ~l~~~~~~~~--~~--~~~~---~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 252 (473)
+++++..++. .+ +..+ ...+++|+.|++++|.+. .... .+.++++|+.|+++++. +...+ .+.. ++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp--~~~~-L~ 595 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLE--AFGT-NV 595 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC--CCCT-TS
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccch--hhcC-CC
Confidence 9999764665 22 2211 124569999999999888 4445 68899999999999854 44322 3444 89
Q ss_pred CCcEEecCCCCccchHHHHHHHhcCcc-cceeeccccccCchhHHHhhhCCC--CCCeeEecCCcCChhHHH---HHH-h
Q 012001 253 SLKALNLSKCQNISHVGLSSLIKGADY-LQQLILAYSFWVSADLSKCLHNFP--MLQSIKFEDCPVARSGIK---AIG-N 325 (473)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~l~-~ 325 (473)
+|+.|+++++... . ++..+..+++ |+.|+++++. +. .++..+...+ +|+.|++++|.+...... .+. .
T Consensus 596 ~L~~L~Ls~N~l~-~--lp~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-E--IPEDFCAFTDQVEGLGFSHNK-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp EESEEECCSSCCS-C--CCTTSCEECTTCCEEECCSSC-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred cceEEECcCCccc-c--chHHHhhccccCCEEECcCCC-CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 9999999988733 1 2223555777 9999999885 33 4455555544 499999999987653211 010 0
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHH------HhcCCCCCEEEccCCCCCCHHHHH
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI------TKTCTSLTSLRMECCKLVSWEAFV 399 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~ 399 (473)
.+++|+.|+++++ .++.. -..++..+++|+.|+++++. ++....... ..++++|+.|++++|. ++. ++
T Consensus 671 ~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~--lp 744 (876)
T 4ecn_A 671 KGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS--LS 744 (876)
T ss_dssp CCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC--CC
T ss_pred cCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-Ccc--ch
Confidence 2358999999984 55521 12345578999999999875 542111100 0122389999999975 552 22
Q ss_pred HHH--hcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCC-----CcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 400 LIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS-----NITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 400 ~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
... ..+++|+.|++++|.++. .+..+..+++|+.|++++|. .+.. .++.....+++|+.|++++|.-
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCC
T ss_pred HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc-cChHHHhcCCCCCEEECCCCCC
Confidence 222 278999999999999987 34567789999999998742 3332 2344445799999999999864
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-20 Score=169.81 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=178.6
Q ss_pred HhhCCCCcEEeeccccCCCCcccc----cccCcccCeeeccCCC--CCCh---HHHHHHH---hcCCCCcEEecCCCCcc
Q 012001 198 ALKCQEIRTLDLSYLPITEKCLPP----VVKLQYLEDLVLEGCH--GIDD---DGLASVE---YSCKSLKALNLSKCQNI 265 (473)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~--~~~~---~~~~~l~---~~~~~L~~L~l~~~~~~ 265 (473)
...+++|++|++++|.+++..... +..+++|++|++++|. .+.. ..+..+. ..+++|++|+++++. +
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 447889999999999887765544 4478899999998862 2222 2222222 237899999998876 3
Q ss_pred chH---HHHHHHhcCcccceeeccccccCchhH----HHhhhCC---------CCCCeeEecCCcCChhHHHHHH---hh
Q 012001 266 SHV---GLSSLIKGADYLQQLILAYSFWVSADL----SKCLHNF---------PMLQSIKFEDCPVARSGIKAIG---NW 326 (473)
Q Consensus 266 ~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~---------~~L~~L~l~~~~~~~~~~~~l~---~~ 326 (473)
+.. .+...+..+++|++|+++++. +.... ...+..+ ++|+.|++++|.+++..+..++ ..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 332 344456778899999998874 33322 2333344 8899999999888866665433 26
Q ss_pred CCCCCeEecCCCCCCChHHHHHHH----HhCCCCcEEecCCCCCCCHHHHHH---HHhcCCCCCEEEccCCCCCCHHHHH
Q 012001 327 HGSLKELSLSKCSGVTDEELSFVV----QSHKELRKLDITCCRKITYASINS---ITKTCTSLTSLRMECCKLVSWEAFV 399 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~ 399 (473)
+++|++|++++| .+++.++..++ ..+++|+.|++++|. +++.+... ....+++|+.|++++|. +++.+..
T Consensus 186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 262 (386)
T 2ca6_A 186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA 262 (386)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHH
Confidence 788999999884 77776644443 467889999998876 66544333 33567889999998865 7776555
Q ss_pred HHHh-----cCccCCeeeecccccChhhhh----hh-hcCCCCCeeecCCCCCcchHH--HHHHHhcCccCCeeecCC
Q 012001 400 LIGQ-----QCQYLEELDITENEVNDEGLK----SI-SRCSKLSSLKLGICSNITDEG--LKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 400 ~~~~-----~~~~L~~L~l~~~~~~~~~~~----~l-~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~ 465 (473)
.+.. .+++|+.|++++|.+++.++. .+ .++++|+.|++++| .++..+ +..+...+++++.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 4432 278899999998888885333 33 34788999999988 777655 456666667766555543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-24 Score=218.14 Aligned_cols=374 Identities=17% Similarity=0.082 Sum_probs=218.5
Q ss_pred CCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC
Q 012001 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (473)
Q Consensus 70 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (473)
.++++.|+++++. +...... ....+++|++|+++++........ ..+..+++|++|+++++ .+.......+..+
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~---~~~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTAS---SFPFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSS-KIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSS---SCSSCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTC-CCCEECTTSSCSC
T ss_pred CCCcCEEECCCCc-CCccChh---HCcccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCC-cCcccCHhHccCC
Confidence 3679999999864 2221111 246779999999998743322212 22348999999999988 4555444678889
Q ss_pred CCCCEEecccCcccCHHHHH-HHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccC--c
Q 012001 150 KNLERLWLARCKLITDLGIG-RIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL--Q 226 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~ 226 (473)
++|++|+++++.. ....+. .....+++|++|+++++. +...........+++|++|++++|.+.......+..+ +
T Consensus 97 ~~L~~L~Ls~n~l-~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGL-SDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SSCCCEECTTCCC-SSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred cccCEeeCcCCCC-CcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999998753 321111 112348999999999874 3332222234588999999999998877666666655 8
Q ss_pred ccCeeeccCCCCCChHHHHHHHhcCC------CCcEEecCCCCccchH--HHHH--------------------------
Q 012001 227 YLEDLVLEGCHGIDDDGLASVEYSCK------SLKALNLSKCQNISHV--GLSS-------------------------- 272 (473)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~------~L~~L~l~~~~~~~~~--~~~~-------------------------- 272 (473)
+|+.|+++++..... ....+.. ++ .|+.|+++++...... .+..
T Consensus 175 ~L~~L~L~~n~l~~~-~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 175 TLSFFSLAANSLYSR-VSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SSCCCEECCSBSCCC-CCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred ccceEECCCCccccc-cccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 999999988543221 1111111 22 3889998876321100 0000
Q ss_pred ------HHhc--CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChH
Q 012001 273 ------LIKG--ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE 344 (473)
Q Consensus 273 ------~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 344 (473)
.+.+ .++|+.|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|++|+++++ .++..
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~ 329 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYN-LLGEL 329 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESC-CCSCC
T ss_pred CCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCC-CCCcc
Confidence 0011 2567778877763 3333445567778888888888876654443343 6778888888774 33321
Q ss_pred HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh---
Q 012001 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE--- 421 (473)
Q Consensus 345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 421 (473)
....+..+++|+.|+++++. ++...... ...+++|+.|+++++. ++... .+++|+.|++++|.++..
T Consensus 330 -~~~~~~~l~~L~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i~------~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 330 -YSSNFYGLPKVAYIDLQKNH-IAIIQDQT-FKFLEKLQTLDLRDNA-LTTIH------FIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp -CSCSCSSCTTCCEEECCSCC-CCCCCSSC-SCSCCCCCEEEEETCC-SCCCS------SCCSCSEEEEESCCCCCCCCC
T ss_pred -CHHHhcCCCCCCEEECCCCC-CCccChhh-hcCCCCCCEEECCCCC-CCccc------CCCCcchhccCCCCccccccc
Confidence 11224456788888887764 33221111 1356788888887754 33211 255666666666554422
Q ss_pred -----------------hh-hhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 422 -----------------GL-KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 422 -----------------~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
.. ..+..+++|+.|++++| +++..........+++|++|++++|.
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc
Confidence 11 11234556666666666 44421111122235566666666553
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-22 Score=192.12 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=159.4
Q ss_pred CCCCcEEeeccccCCCCccccc-----ccCcccCeeeccCCCC-CChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHH
Q 012001 201 CQEIRTLDLSYLPITEKCLPPV-----VKLQYLEDLVLEGCHG-IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI 274 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (473)
+++|++|+++++.+.+.....+ .++++|+.+++.++.. +....+..+.. .++|+.|+++++...... ..
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~----~~ 320 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHML----CP 320 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCC----CC
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCcccccc----ch
Confidence 4578888888777665555555 6678888888877442 12123333333 367999999987643221 01
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCCh--hHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHh
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR--SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS 352 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (473)
..+++|++|+++++. +....+..+..+++|+.|++++|.+.+ ..+..+. .+++|+.|+++++ .+....-...+..
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N-~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQN-SVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCC-cCCcccccchhcc
Confidence 568999999999984 555567778899999999999999886 3333444 8899999999984 4543111112445
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcC-CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCC
Q 012001 353 HKELRKLDITCCRKITYASINSITKTC-TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
+++|++|++++|. ++.... ..+ ++|+.|++++|. ++ .++.....+++|+.|++++|.++......+..+++
T Consensus 398 l~~L~~L~Ls~N~-l~~~~~----~~l~~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 398 TKSLLSLNMSSNI-LTDTIF----RCLPPRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CTTCCEEECCSSC-CCGGGG----GSCCTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CccCCEEECcCCC-CCcchh----hhhcccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 6899999999986 543222 233 799999999965 55 22222228999999999999998765545778999
Q ss_pred CCeeecCCCCCcc
Q 012001 432 LSSLKLGICSNIT 444 (473)
Q Consensus 432 L~~L~l~~~~~l~ 444 (473)
|+.|++++| .++
T Consensus 470 L~~L~l~~N-~~~ 481 (520)
T 2z7x_B 470 LQKIWLHTN-PWD 481 (520)
T ss_dssp CCEEECCSS-CBC
T ss_pred ccEEECcCC-CCc
Confidence 999999999 554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=172.38 Aligned_cols=260 Identities=15% Similarity=0.192 Sum_probs=168.9
Q ss_pred cCCcCceeecccCCCCCHHHHHHH---HhhCCCCcEEeeccccCC---CCccccc-------ccCcccCeeeccCCCCCC
Q 012001 174 CCRKLKLLCLKWCIRVTDLGVELV---ALKCQEIRTLDLSYLPIT---EKCLPPV-------VKLQYLEDLVLEGCHGID 240 (473)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~l-------~~~~~L~~L~l~~~~~~~ 240 (473)
.+++|++|+++++ .++......+ ...+++|++|+++++.+. +..+..+ ..+++|++|+++++ .++
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 4788888888886 4666554443 336788888888886332 2222222 46788888888884 455
Q ss_pred hH----HHHHHHhcCCCCcEEecCCCCccchHH---HHHHHhcC---------cccceeeccccccCchhHH---HhhhC
Q 012001 241 DD----GLASVEYSCKSLKALNLSKCQNISHVG---LSSLIKGA---------DYLQQLILAYSFWVSADLS---KCLHN 301 (473)
Q Consensus 241 ~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~---------~~L~~L~l~~~~~~~~~~~---~~l~~ 301 (473)
.. ....+.. +++|++|+++++. ++..+ +...+..+ ++|++|+++++.......+ ..+..
T Consensus 108 ~~~~~~l~~~l~~-~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 108 PTAQEPLIDFLSK-HTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp TTTHHHHHHHHHH-CTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 42 2234444 8888888888876 34332 22223333 7888888888753323333 46667
Q ss_pred CCCCCeeEecCCcCChhHHHHHHh----hCCCCCeEecCCCCCCChHH---HHHHHHhCCCCcEEecCCCCCCCHHHHHH
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGN----WHGSLKELSLSKCSGVTDEE---LSFVVQSHKELRKLDITCCRKITYASINS 374 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (473)
+++|+.|++++|.+.+.+...+.. .+++|+.|++++| .+++.+ ++..+..+++|++|++++|. +++.+...
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence 888888888888888776555443 6788888888884 565433 34455667888888888876 77665544
Q ss_pred HHh-----cCCCCCEEEccCCCCCCHHHHHH----HHhcCccCCeeeecccccChhh--hhhhh-cCCCCCeeecCCC
Q 012001 375 ITK-----TCTSLTSLRMECCKLVSWEAFVL----IGQQCQYLEELDITENEVNDEG--LKSIS-RCSKLSSLKLGIC 440 (473)
Q Consensus 375 ~~~-----~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~l~-~~~~L~~L~l~~~ 440 (473)
+.. .+++|+.|++++|. ++..++.. +..++++|+.|++++|.+++.+ +..+. .+++++.+.+...
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 433 27888888888865 66643332 3235788888888888888766 34443 3555555555544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-23 Score=196.97 Aligned_cols=303 Identities=16% Similarity=0.126 Sum_probs=200.3
Q ss_pred CCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCC
Q 012001 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (473)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (473)
.++++.|+++++ .+.......+..+++|++|++.++. +.......+. .+++|++|+++++. +...+.. ....+++
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFN-NLFNLRTLGLRSNR-LKLIPLG-VFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSC-CCSCCTT-SSTTCTT
T ss_pred CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhh-CCccCCEEECCCCc-CCccCcc-cccCCCC
Confidence 368999999988 4665544567889999999999864 4433222233 38899999998863 3332221 1236789
Q ss_pred CcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccccee
Q 012001 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (473)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (473)
|++|++++|.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|+.|
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l-~~~~-~~~l~~l~~L~~L 181 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG-LNSLEQLTLEKCNL-TSIP-TEALSHLHGLIVL 181 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTT-CTTCCEEEEESCCC-SSCC-HHHHTTCTTCCEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccC-CCCCCEEECCCCcC-cccC-hhHhcccCCCcEE
Confidence 999999999887665666778899999999884 344332233444 78899999988763 2221 2335678889999
Q ss_pred eccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCC
Q 012001 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (473)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (473)
+++++. +.......+..+++|+.|+++++........... ...+|++|+++++ .++... ...+..+++|+.|++++
T Consensus 182 ~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 182 RLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCS
T ss_pred eCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCC-cccccC-HHHhcCccccCeeECCC
Confidence 888763 3333445567788888998888765443333222 3458888888874 444321 23456778888888887
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCc
Q 012001 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (473)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (473)
+. ++......+ ..+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++| .+
T Consensus 258 n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l 332 (477)
T 2id5_A 258 NP-ISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYAFR-GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN-PL 332 (477)
T ss_dssp SC-CCEECTTSC-TTCTTCCEEECCSSC-CSEECTTTBT-TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS-CE
T ss_pred Cc-CCccChhhc-cccccCCEEECCCCc-cceECHHHhc-CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC-Cc
Confidence 65 443222112 357788888888754 4433222222 6788888888888887766666677888888888888 44
Q ss_pred c
Q 012001 444 T 444 (473)
Q Consensus 444 ~ 444 (473)
.
T Consensus 333 ~ 333 (477)
T 2id5_A 333 A 333 (477)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-24 Score=211.52 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
++++.|+++++.- ...... ....+++|++|+++++. +..... ..+..+++|++|+++++. +...+...+..++
T Consensus 28 ~~l~~L~Ls~n~l-~~~~~~---~~~~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPL-RHLGSY---SFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCC-CEECTT---TTTTCSSCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCT
T ss_pred ccccEEEccCCcc-CccChh---HhhCCCCceEEECCCCc-CCccCc-ccccCchhCCEEeCcCCc-CCccCHhhhcCcc
Confidence 4699999998742 221111 23567899999999875 332222 223478999999999884 5554445678899
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCccc--
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL-- 228 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-- 228 (473)
+|++|++.++. +...+...+ ..+++|++|+++++. +....+......+++|++|+++++.+.......+..+++|
T Consensus 101 ~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 101 SLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCCEEECTTSC-CCCSTTCSC-TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccc-cccCCCccc-cccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999864 332211112 248999999999864 3321122224478999999999998876555556656666
Q ss_pred --CeeeccCC
Q 012001 229 --EDLVLEGC 236 (473)
Q Consensus 229 --~~L~l~~~ 236 (473)
+.++++++
T Consensus 178 ~~~~L~l~~n 187 (570)
T 2z63_A 178 LNLSLDLSLN 187 (570)
T ss_dssp CCCEEECTTC
T ss_pred hhhhcccCCC
Confidence 56666653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-22 Score=187.84 Aligned_cols=327 Identities=15% Similarity=0.075 Sum_probs=232.5
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcC
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (473)
...++++.++++++. +.... ..+...+++|++|+++++ .+.+.+...+..+++|++|++.++. +.......+ ..+
T Consensus 42 ~~l~~l~~l~l~~~~-l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l 116 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNV 116 (390)
T ss_dssp GGGCCCSEEEEESCE-ESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTC
T ss_pred cccCCceEEEecCCc-hhhCC-hhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHh-cCC
Confidence 346889999998764 22222 233447999999999988 4665554578889999999999875 333222222 338
Q ss_pred CcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
++|++|+++++. +...+.. ....+++|++|++++|.+.......+..+++|++|+++++ .+.... +.. +++|+
T Consensus 117 ~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~-l~~L~ 189 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSL-IPSLF 189 (390)
T ss_dssp TTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGG-CTTCS
T ss_pred CCCCEEECCCCc-cCcCCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---ccc-ccccc
Confidence 999999999864 4432221 1246899999999999887666667888999999999985 444332 333 89999
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEec
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (473)
.|+++++.. .. +...++|++|+++++.... . + ...+++|+.|++++|.+.+. ..+ ..+++|++|++
T Consensus 190 ~L~l~~n~l-~~------~~~~~~L~~L~l~~n~l~~-~-~--~~~~~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~L 255 (390)
T 3o6n_A 190 HANVSYNLL-ST------LAIPIAVEELDASHNSINV-V-R--GPVNVELTILKLQHNNLTDT--AWL-LNYPGLVEVDL 255 (390)
T ss_dssp EEECCSSCC-SE------EECCSSCSEEECCSSCCCE-E-E--CCCCSSCCEEECCSSCCCCC--GGG-GGCTTCSEEEC
T ss_pred eeecccccc-cc------cCCCCcceEEECCCCeeee-c-c--ccccccccEEECCCCCCccc--HHH-cCCCCccEEEC
Confidence 999998763 22 1235689999998874322 1 1 13357999999999998764 233 37899999999
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc
Q 012001 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (473)
+++ .++.. .+..+..+++|++|+++++. ++.. ......+++|+.|++++|. ++... ..+ ..+++|+.|++++
T Consensus 256 s~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~-~~~-~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 256 SYN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQ-PQFDRLENLYLDH 327 (390)
T ss_dssp CSS-CCCEE-ESGGGTTCSSCCEEECCSSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGH-HHHTTCSEEECCS
T ss_pred CCC-cCCCc-ChhHccccccCCEEECCCCc-Cccc--CcccCCCCCCCEEECCCCc-ceecC-ccc-cccCcCCEEECCC
Confidence 984 55532 23345678999999999875 4432 1122468999999999975 54221 112 2679999999999
Q ss_pred cccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCe
Q 012001 416 NEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (473)
Q Consensus 416 ~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 460 (473)
|.+++.. +..+++|+.|++++| .++......+...++....
T Consensus 328 N~i~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~~~~ 368 (390)
T 3o6n_A 328 NSIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVARPAV 368 (390)
T ss_dssp SCCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCTTTB
T ss_pred CccceeC---chhhccCCEEEcCCC-CccchhHHHHHHHHHhhcc
Confidence 9988764 567899999999999 8888787777766665543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-22 Score=186.20 Aligned_cols=265 Identities=14% Similarity=0.072 Sum_probs=110.0
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (473)
.+++|++|+++++ .+...+...+..+++|++|++.++. +...... +...+++|++|+++++. +...... ....++
T Consensus 91 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~ 165 (390)
T 3o6n_A 91 YAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNNN-LERIEDD-TFQATT 165 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CCBCCTT-TTSSCT
T ss_pred CCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHH-HhcCCCCCcEEECCCCc-cCccChh-hccCCC
Confidence 4555555555554 2333322334455555555555542 2211111 11124555555555432 2111111 112445
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
+|++|+++++.++.. .+..+++|+.++++++ .+... . ..++|+.|+++++...... ....++|+.
T Consensus 166 ~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n-~l~~~-----~-~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~ 230 (390)
T 3o6n_A 166 SLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN-LLSTL-----A-IPIAVEELDASHNSINVVR-----GPVNVELTI 230 (390)
T ss_dssp TCCEEECCSSCCSBC---CGGGCTTCSEEECCSS-CCSEE-----E-CCSSCSEEECCSSCCCEEE-----CCCCSSCCE
T ss_pred CCCEEECCCCcCCcc---ccccccccceeecccc-ccccc-----C-CCCcceEEECCCCeeeecc-----ccccccccE
Confidence 555555555544432 2233455555555542 22211 1 1345555555544321110 011345555
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecC
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (473)
|+++++.... . ..+..+++|+.|++++|.+.+..+..+. .+++|++|+++++ .++. ++.....+++|+.|+++
T Consensus 231 L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 231 LKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp EECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECC
T ss_pred EECCCCCCcc-c--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECC
Confidence 5555542211 1 2344555555555555554443333332 4455555555552 3322 11112234555555555
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh
Q 012001 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422 (473)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (473)
+|. ++.. ......+++|+.|++++|. ++... ...+++|+.|++++|.++...
T Consensus 304 ~n~-l~~~--~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 304 HNH-LLHV--ERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SSC-CCCC--GGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred CCc-ceec--CccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCCccchh
Confidence 543 2211 1111234555555555533 32221 114455555555555555443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-23 Score=195.72 Aligned_cols=306 Identities=15% Similarity=0.126 Sum_probs=213.8
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcC
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (473)
...++++.|+++++. +....... +..+++|++|+++++ .+.......+..+++|++|++.++. +.......+ ..+
T Consensus 29 ~~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKNR-IKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGL 103 (477)
T ss_dssp CCCTTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTC
T ss_pred CCCCCCcEEECCCCc-cceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCC
Confidence 345789999999875 33322222 347999999999988 5665544678889999999999864 443222222 338
Q ss_pred CcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
++|++|+++++. +..... .....+++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+
T Consensus 104 ~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~-l~~L~ 179 (477)
T 2id5_A 104 SNLTKLDISENK-IVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSH-LHGLI 179 (477)
T ss_dssp TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTT-CTTCC
T ss_pred CCCCEEECCCCc-cccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcc-cCCCc
Confidence 999999999864 332211 12247899999999999887766677889999999999985 455444444555 99999
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEec
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (473)
.|++.++...... ...+..+++|+.|+++++.... ..+.......+|+.|++++|.+.......+. .+++|+.|++
T Consensus 180 ~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 255 (477)
T 2id5_A 180 VLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVR-HLVYLRFLNL 255 (477)
T ss_dssp EEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHT-TCTTCCEEEC
T ss_pred EEeCCCCcCcEeC--hhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhc-CccccCeeEC
Confidence 9999987632211 1124568899999999875443 3333344456999999999998865555554 7899999999
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc
Q 012001 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (473)
+++ .++... ...+..+++|+.|+++++. ++......+ ..+++|+.|+++++. ++......+ ..+++|+.|++++
T Consensus 256 s~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~ 329 (477)
T 2id5_A 256 SYN-PISTIE-GSMLHELLRLQEIQLVGGQ-LAVVEPYAF-RGLNYLRVLNVSGNQ-LTTLEESVF-HSVGNLETLILDS 329 (477)
T ss_dssp CSS-CCCEEC-TTSCTTCTTCCEEECCSSC-CSEECTTTB-TTCTTCCEEECCSSC-CSCCCGGGB-SCGGGCCEEECCS
T ss_pred CCC-cCCccC-hhhccccccCCEEECCCCc-cceECHHHh-cCcccCCEEECCCCc-CceeCHhHc-CCCcccCEEEccC
Confidence 984 454321 2234577999999999875 443322222 468999999999964 543222222 3789999999999
Q ss_pred cccCh
Q 012001 416 NEVND 420 (473)
Q Consensus 416 ~~~~~ 420 (473)
|.+..
T Consensus 330 N~l~c 334 (477)
T 2id5_A 330 NPLAC 334 (477)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 97653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-22 Score=192.83 Aligned_cols=323 Identities=15% Similarity=0.085 Sum_probs=226.8
Q ss_pred cCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
...+++.++++++. +.... ..++..+++|+.|+++++ .+...+...+..+++|++|++.++. +.......+ ..++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-ESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred cCCCceEEEeeCCC-CCCcC-HHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH-cCCC
Confidence 45788999998764 22222 233447999999999988 4666554578889999999999875 443322222 3389
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcE
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (473)
+|++|+++++. +...+.. .+..+++|++|++++|.+.......+..+++|+.|+++++ .+.... +.. +++|+.
T Consensus 124 ~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~-l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSL-IPSLFH 196 (597)
T ss_dssp TCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGG-CTTCSE
T ss_pred CCCEEEeeCCC-CCCCCHH-HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhh-hhhhhh
Confidence 99999999874 4432221 1247899999999999888766667888999999999985 344332 233 899999
Q ss_pred EecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecC
Q 012001 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (473)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (473)
|+++++.. .. +...++|+.|+++++.... . +. ...++|+.|++++|.+.+. ..+. .+++|+.|+++
T Consensus 197 L~l~~n~l-~~------l~~~~~L~~L~ls~n~l~~-~-~~--~~~~~L~~L~L~~n~l~~~--~~l~-~l~~L~~L~Ls 262 (597)
T 3oja_B 197 ANVSYNLL-ST------LAIPIAVEELDASHNSINV-V-RG--PVNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLS 262 (597)
T ss_dssp EECCSSCC-SE------EECCTTCSEEECCSSCCCE-E-EC--SCCSCCCEEECCSSCCCCC--GGGG-GCTTCSEEECC
T ss_pred hhcccCcc-cc------ccCCchhheeeccCCcccc-c-cc--ccCCCCCEEECCCCCCCCC--hhhc-cCCCCCEEECC
Confidence 99998763 22 1335689999998874321 1 11 1246899999999998764 2333 78999999999
Q ss_pred CCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
++ .++.. .+..+..+++|+.|+++++. ++.. ......+++|+.|++++|. ++... ..+ ..+++|+.|++++|
T Consensus 263 ~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~-~~l~~L~~L~L~~N 334 (597)
T 3oja_B 263 YN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQ-PQFDRLENLYLDHN 334 (597)
T ss_dssp SS-CCCEE-ESGGGTTCSSCCEEECTTSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGH-HHHTTCSEEECCSS
T ss_pred CC-ccCCC-CHHHhcCccCCCEEECCCCC-CCCC--CcccccCCCCcEEECCCCC-CCccC-ccc-ccCCCCCEEECCCC
Confidence 84 55532 23345678999999999875 4432 2222458999999999975 44211 112 26799999999999
Q ss_pred ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCcc
Q 012001 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (473)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (473)
.++... +..+++|+.|++++| .++...+..+...+..
T Consensus 335 ~l~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~ 371 (597)
T 3oja_B 335 SIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVAR 371 (597)
T ss_dssp CCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCT
T ss_pred CCCCcC---hhhcCCCCEEEeeCC-CCCChhHHHHHHHHhh
Confidence 887753 567899999999999 8887666666654443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=176.76 Aligned_cols=306 Identities=16% Similarity=0.130 Sum_probs=178.6
Q ss_pred hccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHH
Q 012001 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146 (473)
Q Consensus 67 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 146 (473)
+..++++++|+++++. +.+. +....+++|++|+++++. +.... ...+++|++|+++++. +... .+
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~---~~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDM-----TGIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNL---DV 102 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCC-----TTGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCC---CC
T ss_pred hhHcCCCCEEEccCCC-cccC-----hhhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Ccee---ec
Confidence 3456788888888764 2221 123556888888888765 33221 3367888888888774 4443 26
Q ss_pred HcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCc
Q 012001 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQ 226 (473)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (473)
..+++|++|+++++. +...+ ...+++|++|+++++. ++..+ ...+++|++|++++|...... .+..++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred CCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCccccc--ccccCC
Confidence 678888888888764 33322 2337788888887764 33322 336778888888877332222 456678
Q ss_pred ccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCC
Q 012001 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (473)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (473)
+|+.|+++++ .+.... +.. +++|+.|+++++.... .. +..+++|+.|+++++.. .. ++ +..+++|+
T Consensus 171 ~L~~L~ls~n-~l~~l~---l~~-l~~L~~L~l~~N~l~~-~~----l~~l~~L~~L~Ls~N~l-~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 171 QLTTLDCSFN-KITELD---VSQ-NKLLNRLNCDTNNITK-LD----LNQNIQLTFLDCSSNKL-TE-ID--VTPLTQLT 236 (457)
T ss_dssp TCCEEECCSS-CCCCCC---CTT-CTTCCEEECCSSCCSC-CC----CTTCTTCSEEECCSSCC-SC-CC--CTTCTTCS
T ss_pred cCCEEECCCC-ccceec---ccc-CCCCCEEECcCCcCCe-ec----cccCCCCCEEECcCCcc-cc-cC--ccccCCCC
Confidence 8888888774 344322 333 7788888887765322 21 44567888888877643 22 22 66777888
Q ss_pred eeEecCCcCChhHHHHHHhhCCCCCeEecCC----------CCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH
Q 012001 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSK----------CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (473)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (473)
.|++++|.+....+ ..+++|+.|+++. |...... + +..+++|+.|++++|..+....
T Consensus 237 ~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~--~--~~~l~~L~~L~Ls~n~~l~~l~----- 303 (457)
T 3bz5_A 237 YFDCSVNPLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYF--Q--AEGCRKIKELDVTHNTQLYLLD----- 303 (457)
T ss_dssp EEECCSSCCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEE--E--CTTCTTCCCCCCTTCTTCCEEE-----
T ss_pred EEEeeCCcCCCcCH----HHCCCCCEEeccCCCCCEEECCCCccCCcc--c--ccccccCCEEECCCCcccceec-----
Confidence 88888877665331 1445555554433 2111110 0 1233455555555443222111
Q ss_pred hcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 377 KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
...++|+.|+++ .+++|+.|++++|.++.. .++.+++|+.|++++| ++++
T Consensus 304 ~~~~~L~~L~l~---------------~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 304 CQAAGITELDLS---------------QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp CTTCCCSCCCCT---------------TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB
T ss_pred cCCCcceEechh---------------hcccCCEEECCCCccccc---ccccCCcCcEEECCCC-CCCC
Confidence 011222222222 446788888888777764 2667788888888887 6663
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=174.61 Aligned_cols=304 Identities=19% Similarity=0.128 Sum_probs=203.8
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcC
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (473)
..+++|++|+++++. +... +.+ ..+++|++|+++++ .++..+ +..+++|++|+++++. +...+ ...+
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~----~~~l 105 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNK-LTNLD----VTPL 105 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSC-CSCCC----CTTC
T ss_pred hHcCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCC-Cceee----cCCC
Confidence 345889999998874 3322 233 37899999999988 455532 6778899999998875 33332 2348
Q ss_pred CcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
++|++|+++++. +...+ ...+++|++|++++|.+++. .+..+++|++|+++++..++... +.. +++|+
T Consensus 106 ~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~-l~~L~ 173 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTP-QTQLT 173 (457)
T ss_dssp TTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTT-CTTCC
T ss_pred CcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---ccc-CCcCC
Confidence 889999998864 33332 34778899999988877653 36678888888888865554432 333 78888
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEec
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (473)
.|+++++.. +... +..+++|+.|+++++.... . .+..+++|+.|++++|.+.+.. +. .+++|+.|++
T Consensus 174 ~L~ls~n~l-~~l~----l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~ip---~~-~l~~L~~L~l 240 (457)
T 3bz5_A 174 TLDCSFNKI-TELD----VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEID---VT-PLTQLTYFDC 240 (457)
T ss_dssp EEECCSSCC-CCCC----CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCCC---CT-TCTTCSEEEC
T ss_pred EEECCCCcc-ceec----cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccccC---cc-ccCCCCEEEe
Confidence 888887763 2221 4567888888888774322 2 3667788888888888776632 22 6788888888
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc
Q 012001 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (473)
+++ .++... ...+++|+.|++++ .+|+.|++++|....... ...|++|+.|++++
T Consensus 241 ~~N-~l~~~~----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 241 SVN-PLTELD----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTH 295 (457)
T ss_dssp CSS-CCSCCC----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTT
T ss_pred eCC-cCCCcC----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEECCC
Confidence 873 444321 34567777777654 246666676665443322 12678888888888
Q ss_pred cccChhhhh--------hhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 416 NEVNDEGLK--------SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 416 ~~~~~~~~~--------~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
|........ .++.+++|+.|++++| +++. ++ ...|++|+.|+++++.
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~--l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTE--LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSC--CC--CTTCTTCSEEECCSSC
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCC-cccc--cc--cccCCcCcEEECCCCC
Confidence 743222111 1446789999999999 8885 32 4589999999998865
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-21 Score=188.48 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=24.7
Q ss_pred cccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCC
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (473)
++|+.|+++++.... +..+..+++|+.|++++|.+....+..+. .+++|+.|++++
T Consensus 232 ~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~ 287 (597)
T 3oja_B 232 VELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISN 287 (597)
T ss_dssp SCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTT
T ss_pred CCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCC
Confidence 345555554442211 13344455555555555544433333332 344555555554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-20 Score=182.50 Aligned_cols=349 Identities=15% Similarity=0.085 Sum_probs=223.8
Q ss_pred HHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH-
Q 012001 64 SRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA- 142 (473)
Q Consensus 64 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~- 142 (473)
+..+..+++|++|+++++. +...... ....+++|++|+++++. +.. ++.. .+++|++|+++++. +...+
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~Ls~N~-l~~l~~ 138 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNR-IRSLDFH---VFLFNQDLEYLDVSHNR-LQN--ISCC--PMASLRHLDLSFND-FDVLPV 138 (562)
T ss_dssp GGGTTTCTTCCEEECCSCC-CCEECTT---TTTTCTTCCEEECTTSC-CCE--ECSC--CCTTCSEEECCSSC-CSBCCC
T ss_pred hhhhccCCCccEEECCCCC-CCcCCHH---HhCCCCCCCEEECCCCc-CCc--cCcc--ccccCCEEECCCCC-ccccCc
Confidence 3567889999999999874 3322111 23567999999999876 332 1111 68999999999984 54432
Q ss_pred HHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcC--ceeecccCCC--CCH---------------------------
Q 012001 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL--KLLCLKWCIR--VTD--------------------------- 191 (473)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~--------------------------- 191 (473)
...+.++++|++|+++++. +....+.. +++| +.|+++++.. ...
T Consensus 139 p~~~~~l~~L~~L~L~~n~-l~~~~~~~----l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAK-FRQLDLLP----VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp CGGGGGCTTCCEEEEECSB-CCTTTTGG----GTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred hHhhcccCcccEEecCCCc-cccCchhh----hhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhh
Confidence 2468889999999999965 44433322 5566 9999988643 000
Q ss_pred -------------------------HHHHHHHhhC---------------------------CCCcEEeeccccCCCCcc
Q 012001 192 -------------------------LGVELVALKC---------------------------QEIRTLDLSYLPITEKCL 219 (473)
Q Consensus 192 -------------------------~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~ 219 (473)
.......... ++|++|+++++.+.+...
T Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC
T ss_pred hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc
Confidence 0000001112 255556666555543333
Q ss_pred ccc-----ccCcccCeeeccCCC-CCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCch
Q 012001 220 PPV-----VKLQYLEDLVLEGCH-GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSA 293 (473)
Q Consensus 220 ~~l-----~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 293 (473)
..+ .+++.|+.+++..+. .+....+..+.. .++|+.|+++++...... ....+++|++|+++++. +..
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~l~~n~-l~~ 367 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNV-FTD 367 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSCCCCCC----CCSSCCCCCEEECCSSC-CCT
T ss_pred chhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCCccccc----CccCCCCceEEECCCCc-ccc
Confidence 333 233333333333321 122233333333 467888888877632211 01467899999999884 555
Q ss_pred hHHHhhhCCCCCCeeEecCCcCChh--HHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHH
Q 012001 294 DLSKCLHNFPMLQSIKFEDCPVARS--GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYAS 371 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 371 (473)
..+..+..+++|+.|++++|.+... ....+. .+++|+.|+++++ .++...-...+..+++|+.|+++++. ++...
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 444 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNM-LTGSV 444 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCC-CCcch
Confidence 5667788999999999999998763 223333 7899999999984 44321011124467899999999986 55322
Q ss_pred HHHHHhcC-CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 372 INSITKTC-TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 372 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
. ..+ ++|+.|+++++. ++. ++.....+++|+.|++++|.++......+..+++|+.|++++| .+.
T Consensus 445 ~----~~l~~~L~~L~L~~N~-l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N-~~~ 510 (562)
T 3a79_B 445 F----RCLPPKVKVLDLHNNR-IMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN-PWD 510 (562)
T ss_dssp G----SSCCTTCSEEECCSSC-CCC--CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC-CBC
T ss_pred h----hhhcCcCCEEECCCCc-Ccc--cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC-CcC
Confidence 1 234 699999999964 552 2221227899999999999999755444778999999999999 443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-21 Score=191.90 Aligned_cols=135 Identities=15% Similarity=0.089 Sum_probs=84.6
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (473)
.+++++.++++.+ .+... ....+..++.|+.|+++++...... .......+++|+.|++++|. ++......+. ++
T Consensus 443 ~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-~l 517 (635)
T 4g8a_A 443 SLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SL 517 (635)
T ss_dssp TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TC
T ss_pred ccccccccccccc-ccccc-cccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCCc-cCCcChHHHc-CC
Confidence 4556666666652 22211 1222445678888888876532211 11122457888888888864 5433222222 78
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcC-ccCCeeecCCCC
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTC-SMLKELDLYRFV 467 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~ 467 (473)
++|++|++++|.++......+..+++|+.|++++| +++......+. .+ ++|++|++++||
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTT-CCCTTCCEEECTTCC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHH-hhhCcCCEEEeeCCC
Confidence 88999999888888777667778888999999888 77643222232 44 578888888765
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-18 Score=153.17 Aligned_cols=246 Identities=15% Similarity=0.127 Sum_probs=168.0
Q ss_pred HHHHHhhCCCCcEEeeccccCCCCcc----cccccCc-ccCeeeccCCCCCChHHHHHHHh---c-CCCCcEEecCCCCc
Q 012001 194 VELVALKCQEIRTLDLSYLPITEKCL----PPVVKLQ-YLEDLVLEGCHGIDDDGLASVEY---S-CKSLKALNLSKCQN 264 (473)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~---~-~~~L~~L~l~~~~~ 264 (473)
+..+....++|++|++++|.+++... ..+..++ +|++|++++| .+++.....+.. . .++|++|+++++.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 33444455669999999998887776 5566788 8999999985 555544444443 1 2899999999887
Q ss_pred cch---HHHHHHHhcC-cccceeeccccccCchhHH----HhhhC-CCCCCeeEecCCcCChhHHHHHHh---hCC-CCC
Q 012001 265 ISH---VGLSSLIKGA-DYLQQLILAYSFWVSADLS----KCLHN-FPMLQSIKFEDCPVARSGIKAIGN---WHG-SLK 331 (473)
Q Consensus 265 ~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~---~~~-~L~ 331 (473)
+++ ..+...+... ++|++|+++++. +..... ..+.. .++|+.|++++|.+++.+...+.. ..+ +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 332 2344445555 799999999885 333322 33444 369999999999988766555532 344 899
Q ss_pred eEecCCCCCCCh---HHHHHHHHhC-CCCcEEecCCCCCCCHHHHHHHH---hc-CCCCCEEEccCCCCCCHHHH---HH
Q 012001 332 ELSLSKCSGVTD---EELSFVVQSH-KELRKLDITCCRKITYASINSIT---KT-CTSLTSLRMECCKLVSWEAF---VL 400 (473)
Q Consensus 332 ~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~~~~~~~---~~ 400 (473)
+|++++| .+++ ..+...+..+ ++|++|++++|. +++.+...+. .. .++|+.|++++|. +++.+. ..
T Consensus 171 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 247 (362)
T 3goz_A 171 SLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKL 247 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred EeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHH
Confidence 9999985 4443 3344455566 499999999876 6654333222 23 4689999999864 666444 34
Q ss_pred HHhcCccCCeeeecccc---cChhhhhhhh----cCCCCCeeecCCCCCcchH
Q 012001 401 IGQQCQYLEELDITENE---VNDEGLKSIS----RCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 401 ~~~~~~~L~~L~l~~~~---~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~ 446 (473)
+...+++|+.|++++|. +++.+...+. .+++|+.|++++| .+.+.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 44567899999999987 5555554443 4678889999999 77764
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-21 Score=169.71 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=140.8
Q ss_pred CCcEEeeccccCCC--CcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 203 EIRTLDLSYLPITE--KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 203 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
+++.|+++++.+.+ .....+.++++|++|++++++.+.......+.. +++|++|+++++..... +...+..+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGA--IPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEE--CCGGGGGCTTC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCc--CCHHHhCCCCC
Confidence 45555555555544 344445555555555555322222111222333 55566666555442111 11123445666
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCC-CCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
++|+++++. +....+..+..+++|+.|++++|.+....+..+. .++ +|+.|+++++ .++.. ++..+..++ |+.|
T Consensus 128 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~-~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 128 VTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRN-RLTGK-IPPTFANLN-LAFV 202 (313)
T ss_dssp CEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSS-EEEEE-CCGGGGGCC-CSEE
T ss_pred CEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCC-eeecc-CChHHhCCc-ccEE
Confidence 666666552 2333445556666777777777666544444443 344 6777777663 22211 122233444 7777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
+++++. ++.. .......+++|+.|+++++. ++... .. ...+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 203 ~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 203 DLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS-LAFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp ECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE-ECCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc-eeeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 777654 3221 11222457788888887754 33111 11 23678899999999888877777788888999999999
Q ss_pred CCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 440 CSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
| .++.. ++.. ..+++|+.+++.+++.+.
T Consensus 278 N-~l~~~-ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 278 N-NLCGE-IPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp S-EEEEE-CCCS-TTGGGSCGGGTCSSSEEE
T ss_pred C-ccccc-CCCC-ccccccChHHhcCCCCcc
Confidence 8 77632 3333 478889999998888654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-19 Score=159.99 Aligned_cols=236 Identities=16% Similarity=0.098 Sum_probs=147.6
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++++|.+++.....+.++++|++|+++++ .+.......+.. +++|++|+++++... .......+..+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~~l~~ 150 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP-LSSLTFLNLLGNPYK-TLGETSLFSHLTK 150 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT-CTTCSEEECTTCCCS-SSCSSCSCTTCTT
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC-CccCCEEECCCCCCc-ccCchhhhccCCC
Confidence 5566777777766665444445666677777777763 343333333443 677777777766422 1110012345677
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++..+....+..+..+++|+.|++++|.+.......+. .+++|++|+++++ .+.... ...+..+++|+.|
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L 227 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMK-QHILLL-EIFVDVTSSVECL 227 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECS-CSTTHH-HHHHHHTTTEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCC-ccccch-hhhhhhcccccEE
Confidence 888887776444444445667778888888888776654444444 5677888888774 444322 2334457888888
Q ss_pred ecCCCCCCCHHHHHH--HHhcCCCCCEEEccCCCCCCHHHHHH---HHhcCccCCeeeecccccChhhhhhhhcCCCCCe
Q 012001 360 DITCCRKITYASINS--ITKTCTSLTSLRMECCKLVSWEAFVL---IGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (473)
+++++. ++...... .....+.++.+++.++. +++..+.. ....+++|+.|++++|.++......+..+++|+.
T Consensus 228 ~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 228 ELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ECCCCc-cccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 888765 33221111 12346788899998854 66654433 2347899999999999998665444678999999
Q ss_pred eecCCCCCcc
Q 012001 435 LKLGICSNIT 444 (473)
Q Consensus 435 L~l~~~~~l~ 444 (473)
|++++| .++
T Consensus 306 L~L~~N-~~~ 314 (353)
T 2z80_A 306 IWLHTN-PWD 314 (353)
T ss_dssp EECCSS-CBC
T ss_pred EEeeCC-Ccc
Confidence 999999 554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-17 Score=147.36 Aligned_cols=254 Identities=14% Similarity=0.133 Sum_probs=177.7
Q ss_pred HHHHHhcCCcCceeecccCCCCCHHHH---HHHHhhCC-CCcEEeeccccCCCCcccccccC-----cccCeeeccCCCC
Q 012001 168 IGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQ-EIRTLDLSYLPITEKCLPPVVKL-----QYLEDLVLEGCHG 238 (473)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~ 238 (473)
+..+....++|++|+++++. +++.+. ......++ +|++|++++|.+++.....+..+ ++|++|++++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 34455546669999999875 444433 33445677 89999999999988777777654 999999999964
Q ss_pred CChHHHHHHHh---cC-CCCcEEecCCCCccchHH---HHHHHhc-CcccceeeccccccCc---hhHHHhhhCCC-CCC
Q 012001 239 IDDDGLASVEY---SC-KSLKALNLSKCQNISHVG---LSSLIKG-ADYLQQLILAYSFWVS---ADLSKCLHNFP-MLQ 306 (473)
Q Consensus 239 ~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~---~~~~~~~-~~~L~~L~l~~~~~~~---~~~~~~l~~~~-~L~ 306 (473)
+++.....+.. .+ ++|++|+++++. +++.+ +...+.. .++|++|+++++.... ..+...+..++ +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 54433333322 24 899999999987 44433 3333444 3699999999884321 24455566666 999
Q ss_pred eeEecCCcCChhHHHHHHh---hC-CCCCeEecCCCCCCChHH---HHHHHHh-CCCCcEEecCCCCCCCHHHH---HHH
Q 012001 307 SIKFEDCPVARSGIKAIGN---WH-GSLKELSLSKCSGVTDEE---LSFVVQS-HKELRKLDITCCRKITYASI---NSI 375 (473)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~---~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~ 375 (473)
.|++++|.+++.....++. .+ ++|++|+++++ .+++.+ +...+.. .++|++|++++|. +++.+. ...
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~ 248 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLL 248 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHT
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHH
Confidence 9999999988766655442 45 59999999984 565532 4444545 4699999999885 666444 344
Q ss_pred HhcCCCCCEEEccCCC--CCCHHHHHHHHh---cCccCCeeeecccccChhhhhhh
Q 012001 376 TKTCTSLTSLRMECCK--LVSWEAFVLIGQ---QCQYLEELDITENEVNDEGLKSI 426 (473)
Q Consensus 376 ~~~~~~L~~L~l~~~~--~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l 426 (473)
...+++|+.|++++|. .+++.++..+.. .+++|+.|++++|.+.+.....+
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 4567999999999875 466676666654 45678889999999988754443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-19 Score=159.99 Aligned_cols=246 Identities=13% Similarity=0.052 Sum_probs=129.7
Q ss_pred HHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHH
Q 012001 169 GRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248 (473)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 248 (473)
..+...+++|++|+++++. +....... ...+++|++|++++|.+++ ...+..+++|++|+++++. +.. +.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~Ls~n~-l~~-----l~ 96 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQE-----LL 96 (317)
T ss_dssp HHHHTTGGGCSEEECTTSC-CCCCCHHH-HTTCTTCCEEECTTSCCEE--EEEETTCTTCCEEECCSSE-EEE-----EE
T ss_pred HHHhccCCCCCEEECcCCc-cCcCCHHH-hhCCCcCCEEECCCCcCCc--chhhhhcCCCCEEECcCCc-ccc-----cc
Confidence 3344446677777777753 33322222 2367777777777776643 2236667777777777642 221 11
Q ss_pred hcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCC
Q 012001 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG 328 (473)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 328 (473)
. .++|++|+++++... ... ...+++|++|+++++. +....+..+..+++|+.|++++|.+....+..+...++
T Consensus 97 ~-~~~L~~L~l~~n~l~-~~~----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 V-GPSIETLHAANNNIS-RVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp E-CTTCCEEECCSSCCS-EEE----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred C-CCCcCEEECCCCccC-CcC----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 1 466666666665421 111 1124555555555542 22222233444555555555555544433333322344
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
+|++|++++ +. ++.. ... ..+++|+.|+++++. ++.... . ...+++|
T Consensus 170 ~L~~L~L~~--------------------------N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~l~~-~-~~~l~~L 216 (317)
T 3o53_A 170 TLEHLNLQY--------------------------NF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-E-FQSAAGV 216 (317)
T ss_dssp TCCEEECTT--------------------------SC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-G-GGGGTTC
T ss_pred cCCEEECCC--------------------------Cc-Cccc--ccc-cccccCCEEECCCCc-CCcchh-h-hcccCcc
Confidence 444444444 43 2211 000 125666666666643 332111 1 2266777
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
+.|++++|.++.. ...+..+++|+.|++++| .++...+..+...+++|+.+++.+|
T Consensus 217 ~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 217 TWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp SEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cEEECcCCcccch-hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCc
Confidence 7777777777643 234556777888888887 6664456666667777777766643
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-18 Score=152.16 Aligned_cols=272 Identities=16% Similarity=0.104 Sum_probs=188.5
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.+.|+.|+++++. ++...... ...+++|++|+++++.++......+..+++|++|+++++ .+..... ...++|
T Consensus 51 ~~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L 123 (330)
T 1xku_A 51 PPDTALLDLQNNK-ITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE----KMPKTL 123 (330)
T ss_dssp CTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS----SCCTTC
T ss_pred CCCCeEEECCCCc-CCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh----hhcccc
Confidence 4689999999864 44332212 247899999999999888766778889999999999985 3442211 114789
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCc-hhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeE
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL 333 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 333 (473)
++|+++++.... .. ...+..+++|+.|+++++.... ...+..+..+++|+.|+++++.+..... . ..++|++|
T Consensus 124 ~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~---~~~~L~~L 197 (330)
T 1xku_A 124 QELRVHENEITK-VR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-G---LPPSLTEL 197 (330)
T ss_dssp CEEECCSSCCCB-BC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-S---CCTTCSEE
T ss_pred cEEECCCCcccc-cC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-c---ccccCCEE
Confidence 999999876332 21 2346778999999999875421 1344567889999999999998764211 1 23799999
Q ss_pred ecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeee
Q 012001 334 SLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI 413 (473)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 413 (473)
+++++ .++.. ....+..+++|++|+++++. ++......+ ..+++|+.|++++|. ++. +......+++|+.|++
T Consensus 198 ~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 198 HLDGN-KITKV-DAASLKGLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVYL 270 (330)
T ss_dssp ECTTS-CCCEE-CTGGGTTCTTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEEC
T ss_pred ECCCC-cCCcc-CHHHhcCCCCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEEC
Confidence 99984 55532 12345678999999999875 443322222 468999999999975 442 2212237899999999
Q ss_pred cccccChhhhhhhhc------CCCCCeeecCCCCCcchHHHH-HHHhcCccCCeeecCCCC
Q 012001 414 TENEVNDEGLKSISR------CSKLSSLKLGICSNITDEGLK-HVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 414 ~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~c~ 467 (473)
++|.++..+...+.. .+.++.|++++| .+....+. .....+++++.+++++|.
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecC-cccccccCccccccccceeEEEecccC
Confidence 999998877666542 478999999999 55532222 334468899999998873
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-18 Score=172.57 Aligned_cols=138 Identities=17% Similarity=0.095 Sum_probs=96.4
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+++++.++++.+.+.......+. .+++|+.|+++++.... ...+..+..+++|+.|++++|. ++...... ..
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~-f~ 515 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-FN 515 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC-CCEECTTT-TT
T ss_pred ccccccccccccccccccccccccccc-cchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCc-cCCcChHH-Hc
Confidence 455667788888887765433332222 67899999999853222 1122335677999999999885 55332222 25
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC-CCCCeeecCCCC
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC-SKLSSLKLGICS 441 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 441 (473)
.+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+ ++|+.|++++|+
T Consensus 516 ~l~~L~~L~Ls~N~-l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 516 SLSSLQVLNMSHNN-FFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCTTCCEEECTTSC-CCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCc-CCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 78999999999964 5432222222 78999999999999998877778777 689999999873
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-18 Score=156.48 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=24.2
Q ss_pred CccCCeeeecccccChh--hhhhhhcCCCCCeeecCCC
Q 012001 405 CQYLEELDITENEVNDE--GLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 405 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~ 440 (473)
.+.|+.|++.+|.+... ....+..+++++.+++++|
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 46788899998877643 2344556888999999887
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-19 Score=156.23 Aligned_cols=231 Identities=19% Similarity=0.120 Sum_probs=145.7
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHH--HHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDG--LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
+++++|+++++.++......+.++++|++|+++++ .+.... ...+.. +++|++|+++++..... ...+..+++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~l---~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFG-TTSLKYLDLSFNGVITM---SSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHS-CSCCCEEECCSCSEEEE---EEEEETCTT
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCccccccc-ccccCEEECCCCccccC---hhhcCCCCC
Confidence 46777777777665433334566777777777764 333211 112333 67788888877652211 111345678
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++..........+..+++|+.|++++|.+.......+. .+++|++|+++++ .+.+..++..+..+++|++|
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCC-ccccccchhHHhhCcCCCEE
Confidence 888888776432222224567788888888888876544333333 5688888888874 33321223345567888999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC-CCCeeecC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLG 438 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~ 438 (473)
+++++. ++...... ...+++|+.|+++++. ++......+ ..+++|+.|++++|.+++.....+..++ +|+.|+++
T Consensus 181 ~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 181 DLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp ECTTSC-CCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred ECCCCC-cCCcCHHH-hcCCCCCCEEECCCCc-cCccChhhc-cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 988775 44322222 2467899999998865 433222122 3789999999999999888777777774 89999999
Q ss_pred CCCCcc
Q 012001 439 ICSNIT 444 (473)
Q Consensus 439 ~~~~l~ 444 (473)
+| .++
T Consensus 257 ~N-~~~ 261 (306)
T 2z66_A 257 QN-DFA 261 (306)
T ss_dssp TC-CEE
T ss_pred CC-Cee
Confidence 99 554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-18 Score=159.56 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=123.3
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG-LANLNTLELFDNRL-TTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT-CSSCCEEECCSSCC-SSCC-TTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC-CccCCEEECCCCcC-CeeC-HhHhhccccCc
Confidence 45666666666665544555666677777777663 333332223333 66666666666542 1110 01134456777
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
+|+++++. +.......+..+++|+.|++.++.............+++|+.|+++++ .++. ++. +..+++|+.|++
T Consensus 140 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L 214 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDL 214 (440)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEEC
T ss_pred eeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc--ccc-cCCCcccCEEEC
Confidence 77776653 333333456677788888887754222211111225677777777774 3332 111 335567777777
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+++. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 215 s~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 215 SGNH-LSAIRPGS-FQGLMHLQKLWMIQSQ-IQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSC-CCEECTTT-TTTCTTCCEEECTTCC-CCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCc-cCccChhh-hccCccCCEEECCCCc-eeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 7654 43321111 2356677777776643 4332222222 5667777777777666655555566677777777766
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-19 Score=159.56 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=128.4
Q ss_pred hCCCCcEEeecc-ccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCc
Q 012001 200 KCQEIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (473)
Q Consensus 200 ~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (473)
.+++|++|++++ +.+.+.....+.++++|++|+++++ .+.......+.. +++|++|+++++..... +...+..++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~--~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQ-IKTLVTLDFSYNALSGT--LPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGG-CTTCCEEECCSSEEESC--CCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhC-CCCCCEEeCCCCccCCc--CChHHhcCC
Confidence 445555555552 4444334444445555555555542 222111112222 55555555555432111 011134456
Q ss_pred ccceeeccccccCchhHHHhhhCCC-CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 279 YLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
+|++|+++++. +....+..+..++ +|+.|++++|.+....+..+. .++ |+.|+++++ .++.. .+..+..+++|+
T Consensus 150 ~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~ 224 (313)
T 1ogq_A 150 NLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQ 224 (313)
T ss_dssp TCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSS-EEEEC-CGGGCCTTSCCS
T ss_pred CCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECcCC-cccCc-CCHHHhcCCCCC
Confidence 66666666652 3334445556665 777777777765544333333 333 777777763 33221 223345667888
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.|+++++. ++.. ... ...+++|+.|+++++. ++......+ ..+++|+.|++++|.+++..+.. ..+++|+.+++
T Consensus 225 ~L~L~~N~-l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 225 KIHLAKNS-LAFD-LGK-VGLSKNLNGLDLRNNR-IYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp EEECCSSE-ECCB-GGG-CCCCTTCCEEECCSSC-CEECCCGGG-GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred EEECCCCc-eeee-cCc-ccccCCCCEEECcCCc-ccCcCChHH-hcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 88888765 3211 111 2457899999998865 442222223 37899999999999988665443 67899999999
Q ss_pred CCCCCcc
Q 012001 438 GICSNIT 444 (473)
Q Consensus 438 ~~~~~l~ 444 (473)
.+|+.+.
T Consensus 299 ~~N~~lc 305 (313)
T 1ogq_A 299 ANNKCLC 305 (313)
T ss_dssp CSSSEEE
T ss_pred cCCCCcc
Confidence 9996565
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-17 Score=152.64 Aligned_cols=252 Identities=17% Similarity=0.120 Sum_probs=180.3
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++|++|+++++.++......+.++++|++|+++++ .+.......+.. +++|++|+++++... ... ...+..+++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~Ls~n~l~-~~~-~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS-LGSLEHLDLSYNYLS-NLS-SSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCCS-SCC-HHHHTTCTTCS
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC-CCCCCEEECCCCcCC-cCC-HhHhCCCccCC
Confidence 68999999999887655557888999999999985 455443333444 899999999988633 221 23367789999
Q ss_pred eeeccccccCchhHH-HhhhCCCCCCeeEecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 282 QLILAYSFWVSADLS-KCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
+|+++++.. ..... ..+..+++|+.|++++|. +.......+. .+++|++|+++++ .++.. .+..+..+++|++|
T Consensus 128 ~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L 203 (353)
T 2z80_A 128 FLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS-DLQSY-EPKSLKSIQNVSHL 203 (353)
T ss_dssp EEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEEE
T ss_pred EEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC-CcCcc-CHHHHhccccCCee
Confidence 999998743 32212 357789999999999984 4443333333 6789999999984 44432 13335678999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHH---HHHHHhcCccCCeeeecccccChhhhhh----hhcCCCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA---FVLIGQQCQYLEELDITENEVNDEGLKS----ISRCSKL 432 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L 432 (473)
+++++. ++.... .....+++|+.|+++++. ++... +... ..++.++.+++.++.+++..... +..+++|
T Consensus 204 ~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 204 ILHMKQ-HILLLE-IFVDVTSSVECLELRDTD-LDTFHFSELSTG-ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp EEECSC-STTHHH-HHHHHTTTEEEEEEESCB-CTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred cCCCCc-cccchh-hhhhhcccccEEECCCCc-cccccccccccc-cccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 999876 554432 334568999999999865 44322 2222 25778999999999888865443 5579999
Q ss_pred CeeecCCCCCcchHHHHH-HHhcCccCCeeecCCCCC
Q 012001 433 SSLKLGICSNITDEGLKH-VGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 433 ~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~c~~ 468 (473)
+.|++++| +++. ++. +...+++|++|++++|+-
T Consensus 280 ~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 280 LELEFSRN-QLKS--VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCC-CCCc--cCHHHHhcCCCCCEEEeeCCCc
Confidence 99999999 8884 443 335899999999999874
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.9e-18 Score=158.46 Aligned_cols=226 Identities=19% Similarity=0.104 Sum_probs=118.9
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++++.|+++++.+.......+.++++|+.|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG-LASLNTLELFDNWL-TVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCC-SBCC-TTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC-cccCCEEECCCCcC-CccC-hhhhcccCCCC
Confidence 45666666666555444445556666666666653 333322222333 56666666665542 1110 11133456677
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
+|+++++. +.......+..+++|+.|+++++.............+++|+.|+++++ .+++. + .+..+++|+.|++
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDM--P-NLTPLVGLEELEM 225 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSC--C-CCTTCTTCCEEEC
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccc--c-cccccccccEEEC
Confidence 77776653 333333456677788888887754222211111225677777777763 33321 1 1334567777777
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+++. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 226 s~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 226 SGNH-FPEIRPGS-FHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTSC-CSEECGGG-GTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cCCc-CcccCccc-ccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 7654 33221111 2356677777776643 3332222222 5667777777777666555555556667777777766
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-18 Score=155.30 Aligned_cols=249 Identities=14% Similarity=0.073 Sum_probs=169.5
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.++.++..++. .+.. -.++|++|+++++ .+.......+.. +++|++|+++++..............+++|++|+
T Consensus 10 ~~l~c~~~~l~~-ip~~--~~~~l~~L~L~~n-~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTG--IPSSATRLELESN-KLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSS-CCSC--CCTTCCEEECCSS-CCCCCCTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCccc-CCCC--CCCCCCEEECCCC-ccCccCHhHhhc-cccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 455665554432 1122 2468999999985 444333222344 8999999999876332111112234689999999
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++... .++..+..+++|+.|+++++.+...........+++|++|+++++ .+... ....+..+++|++|+++++
T Consensus 85 Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 85 LSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CCSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC
T ss_pred CCCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC
Confidence 9987432 344557789999999999998665433112237899999999985 44321 2233567899999999987
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
. ++..........+++|+.|++++|. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++| .++
T Consensus 161 ~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 236 (306)
T 2z66_A 161 S-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIM 236 (306)
T ss_dssp E-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCC
T ss_pred c-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCc
Confidence 5 4431122233568999999999965 5543223333 7899999999999998877667788999999999999 777
Q ss_pred hHHHHHHHhcC-ccCCeeecCCCC
Q 012001 445 DEGLKHVGSTC-SMLKELDLYRFV 467 (473)
Q Consensus 445 ~~~~~~~~~~~-~~L~~L~l~~c~ 467 (473)
......+. .+ ++|++|++++|+
T Consensus 237 ~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCC-CCCTTCCEEECTTCC
T ss_pred ccCHHHHH-hhhccCCEEEccCCC
Confidence 53333333 56 499999999986
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-19 Score=158.72 Aligned_cols=268 Identities=13% Similarity=0.111 Sum_probs=122.5
Q ss_pred CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC
Q 012001 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (473)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (473)
++|+.|+++++ .+.......+..+++|++|++.++. +.......+. .+++|++|+++++. +...+.. ..++|
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~l~~~----~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS-PLRKLQKLYISKNH-LVEIPPN----LPSSL 125 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST-TCTTCCEEECCSSC-CCSCCSS----CCTTC
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh-CcCCCCEEECCCCc-CCccCcc----ccccC
Confidence 34555555544 2333222234445555555555432 2221111111 24555555555432 2211100 12567
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChH--HHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDD--GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
++|+++++.+.......+..+++|+.|+++++. +... ....+.. + +|+.|+++++.... .. ....++|++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-l-~L~~L~l~~n~l~~-l~----~~~~~~L~~ 197 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDG-L-KLNYLRISEAKLTG-IP----KDLPETLNE 197 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCS-C-CCSCCBCCSSBCSS-CC----SSSCSSCSC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccC-C-ccCEEECcCCCCCc-cC----ccccCCCCE
Confidence 777777776654444445666777777776632 2211 0111111 2 55666665544211 00 001245555
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecC
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (473)
|+++++. +....+..+..+++|+.|++++|.+....... +..+++|++|+++
T Consensus 198 L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~---------------------------~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGS---------------------------LSFLPTLRELHLD 249 (332)
T ss_dssp CBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG---------------------------GGGCTTCCEEECC
T ss_pred EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhH---------------------------hhCCCCCCEEECC
Confidence 5555542 22222233445555555555555443322212 2334455555554
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHh-----cCccCCeeeecccccC--hhhhhhhhcCCCCCee
Q 012001 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVN--DEGLKSISRCSKLSSL 435 (473)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L 435 (473)
++. ++. ++.....+++|+.|+++++. ++..+...+.. ..+.|+.|++.+|.+. +.....+..+++|+.+
T Consensus 250 ~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 250 NNK-LSR--VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp SSC-CCB--CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred CCc-Cee--cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 443 221 11112345666666666532 33322222211 2467889999998776 4444556678999999
Q ss_pred ecCCC
Q 012001 436 KLGIC 440 (473)
Q Consensus 436 ~l~~~ 440 (473)
++++|
T Consensus 326 ~l~~n 330 (332)
T 2ft3_A 326 QFGNY 330 (332)
T ss_dssp EC---
T ss_pred hcccc
Confidence 99887
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-16 Score=147.03 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=50.6
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhC-CCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH-KELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
++|+.|++++|.+.+-. ...++|+.|+++++ .++. +... ++|++|+++++. ++. +...+++
T Consensus 277 ~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N-~l~~------i~~~~~~L~~L~Ls~N~-l~~-----lp~~~~~ 338 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLS-----ELPPNLYYLNASSN-EIRS------LCDLPPSLEELNVSNNK-LIE-----LPALPPR 338 (454)
T ss_dssp TTCCEEECCSSCCSEES-----CCCTTCCEEECCSS-CCSE------ECCCCTTCCEEECCSSC-CSC-----CCCCCTT
T ss_pred CcCCEEECcCCccCccc-----CcCCcCCEEECcCC-cCCc------ccCCcCcCCEEECCCCc-ccc-----ccccCCc
Confidence 45666666665544310 01245666666652 3332 1122 366666666654 332 1112466
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh--hhhhhhhcC-------------CCCCeeecCCCCCcc
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND--EGLKSISRC-------------SKLSSLKLGICSNIT 444 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~~~~l~ 444 (473)
|+.|++++|. ++. ++. .+++|+.|++++|.++. ..+..+..+ ++|+.|++++| .++
T Consensus 339 L~~L~L~~N~-l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~ 409 (454)
T 1jl5_A 339 LERLIASFNH-LAE--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLR 409 (454)
T ss_dssp CCEEECCSSC-CSC--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCEEECCCCc-ccc--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCC
Confidence 7777776643 331 111 35667777777776665 333333333 56777777776 554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-18 Score=151.73 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=52.3
Q ss_pred hCCCCcEEecCCCCCCCHH--HHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 352 SHKELRKLDITCCRKITYA--SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
.+++|++|+++++. ++.. ....+...+++|+.|+++++. ++..........+++|+.|++++|.++.. ...+.
T Consensus 199 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp SCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred cCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 44555555555543 3311 112223345556666655533 32211000111346666666666666532 12222
Q ss_pred CCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++|+.|++++| +++.. +. ...+++|++|++++++
T Consensus 274 ~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCT
T ss_pred CCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCC
Confidence 56677777776 66542 22 3466677777776664
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-16 Score=149.98 Aligned_cols=322 Identities=16% Similarity=0.119 Sum_probs=204.0
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC-
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA- 149 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~- 149 (473)
.++++|+++++. +.. + ....++|++|+++++.- .. ++ ...++|++|+++++. +.. +...
T Consensus 71 ~~l~~L~l~~~~-l~~-----l--p~~~~~L~~L~l~~n~l-~~--lp---~~~~~L~~L~l~~n~-l~~-----l~~~~ 130 (454)
T 1jl5_A 71 RQAHELELNNLG-LSS-----L--PELPPHLESLVASCNSL-TE--LP---ELPQSLKSLLVDNNN-LKA-----LSDLP 130 (454)
T ss_dssp HTCSEEECTTSC-CSC-----C--CSCCTTCSEEECCSSCC-SS--CC---CCCTTCCEEECCSSC-CSC-----CCSCC
T ss_pred cCCCEEEecCCc-ccc-----C--CCCcCCCCEEEccCCcC-Cc--cc---cccCCCcEEECCCCc-cCc-----ccCCC
Confidence 467899998874 222 2 12347899999987652 22 11 235889999999873 443 1122
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
++|++|++.++. +...+ .+ ..+++|++|+++++. +...+ ...++|++|++++|.+.. +..+.++++|+
T Consensus 131 ~~L~~L~L~~n~-l~~lp--~~-~~l~~L~~L~l~~N~-l~~lp-----~~~~~L~~L~L~~n~l~~--l~~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP--EL-QNSSFLKIIDVDNNS-LKKLP-----DLPPSLEFIAAGNNQLEE--LPELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSC-CSSCC--CC-TTCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSS--CCCCTTCTTCC
T ss_pred CCCCEEECcCCC-CCCCc--cc-CCCCCCCEEECCCCc-CcccC-----CCcccccEEECcCCcCCc--CccccCCCCCC
Confidence 689999999874 33322 23 348999999999864 33211 134699999999998865 45688899999
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
+|+++++. +.. +....++|++|+++++... .. .. +..+++|++|+++++.... ++ ..+++|+.|+
T Consensus 199 ~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n~l~-~l--p~-~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~ 263 (454)
T 1jl5_A 199 AIYADNNS-LKK-----LPDLPLSLESIVAGNNILE-EL--PE-LQNLPFLTTIYADNNLLKT--LP---DLPPSLEALN 263 (454)
T ss_dssp EEECCSSC-CSS-----CCCCCTTCCEEECCSSCCS-SC--CC-CTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEE
T ss_pred EEECCCCc-CCc-----CCCCcCcccEEECcCCcCC-cc--cc-cCCCCCCCEEECCCCcCCc--cc---ccccccCEEE
Confidence 99999854 332 1122468999999988633 21 12 4568899999998874321 11 1347899999
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC-CCCCEEEcc
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC-TSLTSLRME 388 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 388 (473)
+++|.+..- ....++|+.|+++++ .++.. + ...++|+.|+++++. ++. + ..+ ++|+.|+++
T Consensus 264 l~~N~l~~l-----~~~~~~L~~L~ls~N-~l~~l--~---~~~~~L~~L~l~~N~-l~~-----i-~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 264 VRDNYLTDL-----PELPQSLTFLDVSEN-IFSGL--S---ELPPNLYYLNASSNE-IRS-----L-CDLPPSLEELNVS 325 (454)
T ss_dssp CCSSCCSCC-----CCCCTTCCEEECCSS-CCSEE--S---CCCTTCCEEECCSSC-CSE-----E-CCCCTTCCEEECC
T ss_pred CCCCccccc-----CcccCcCCEEECcCC-ccCcc--c---CcCCcCCEEECcCCc-CCc-----c-cCCcCcCCEEECC
Confidence 999987641 123578999999984 45431 1 112689999999875 443 1 123 599999999
Q ss_pred CCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchH-HHHHHHhc-------------
Q 012001 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE-GLKHVGST------------- 454 (473)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~------------- 454 (473)
++. ++. +...+++|+.|++++|.++.... .+++|+.|++++| .++.. .++.....
T Consensus 326 ~N~-l~~-----lp~~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 326 NNK-LIE-----LPALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp SSC-CSC-----CCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC--------
T ss_pred CCc-ccc-----ccccCCcCCEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccc
Confidence 855 443 12246899999999998885432 4789999999999 76641 01111112
Q ss_pred CccCCeeecCCCCC
Q 012001 455 CSMLKELDLYRFVT 468 (473)
Q Consensus 455 ~~~L~~L~l~~c~~ 468 (473)
+++|++|++++|+-
T Consensus 395 ~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 395 PQNLKQLHVETNPL 408 (454)
T ss_dssp --------------
T ss_pred cCcCCEEECCCCcC
Confidence 37899999988753
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-17 Score=149.37 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=115.9
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.++++.|+++++. +...+ .....+++|++|++++|.+. .....+.++++|++|+++++. +... ...+.. +++|
T Consensus 80 ~~~l~~L~L~~n~-l~~lp--~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~l-p~~l~~-l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFP--DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRAL-PASIAS-LNRL 152 (328)
T ss_dssp STTCCEEEEESSC-CSSCC--SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCC-CGGGGG-CTTC
T ss_pred ccceeEEEccCCC-chhcC--hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccC-cHHHhc-CcCC
Confidence 4566666666543 22111 11224566666666666555 334445556666666666532 2211 112222 5555
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEe
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (473)
++|++++|....... ..+.... ....+..+++|+.|++++|.+. ..+..+. .+++|++|+
T Consensus 153 ~~L~L~~n~~~~~~p--------~~~~~~~----------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~ 212 (328)
T 4fcg_A 153 RELSIRACPELTELP--------EPLASTD----------ASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLK 212 (328)
T ss_dssp CEEEEEEETTCCCCC--------SCSEEEC-----------CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEE
T ss_pred CEEECCCCCCccccC--------hhHhhcc----------chhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEE
Confidence 555555433221100 0000000 0011234666666666666554 2222222 556666666
Q ss_pred cCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeec
Q 012001 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (473)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (473)
++++ .++. ++..+..+++|++|++++|...+. +......+++|+.|++++|....... ..+ ..+++|+.|+++
T Consensus 213 L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~-~~l~~L~~L~L~ 285 (328)
T 4fcg_A 213 IRNS-PLSA--LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLP-LDI-HRLTQLEKLDLR 285 (328)
T ss_dssp EESS-CCCC--CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCC-TTG-GGCTTCCEEECT
T ss_pred ccCC-CCCc--CchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcc-hhh-hcCCCCCEEeCC
Confidence 6663 3331 222344566777777766553331 11112346777777777765433211 112 267777888887
Q ss_pred ccccChhhhhhhhcCCCCCeeecCCC
Q 012001 415 ENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|.+....+..+.++++|+.+.+..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 77766666677777777777777765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-17 Score=151.19 Aligned_cols=272 Identities=12% Similarity=0.045 Sum_probs=184.6
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.++|+.|+++++. +....... ...+++|++|++++|.++......+.++++|++|+++++ .+..... ...++|
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~----~~~~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP----NLPSSL 125 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCS----SCCTTC
T ss_pred CCCCeEEECCCCc-CCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCc----cccccC
Confidence 4689999999864 44332211 247899999999999888766778889999999999985 3442111 113799
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCc-hhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeE
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL 333 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 333 (473)
++|+++++...... ...+..+++|++|+++++.... ...+..+..+ +|+.|+++++.+..... . ..++|++|
T Consensus 126 ~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~---~~~~L~~L 198 (332)
T 2ft3_A 126 VELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-D---LPETLNEL 198 (332)
T ss_dssp CEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-S---SCSSCSCC
T ss_pred CEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-c---ccCCCCEE
Confidence 99999987632211 1225668999999999874321 1233445555 99999999998764211 1 23799999
Q ss_pred ecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeee
Q 012001 334 SLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI 413 (473)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 413 (473)
+++++ .++... ...+..+++|+.|+++++. ++...... ...+++|+.|++++|. ++. +......+++|+.|++
T Consensus 199 ~l~~n-~i~~~~-~~~l~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 199 HLDHN-KIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENGS-LSFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYL 271 (332)
T ss_dssp BCCSS-CCCCCC-TTSSTTCTTCSCCBCCSSC-CCCCCTTG-GGGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEEC
T ss_pred ECCCC-cCCccC-HHHhcCCCCCCEEECCCCc-CCcCChhH-hhCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEEC
Confidence 99984 444321 1234577999999999875 44322222 2568999999999965 542 2222338899999999
Q ss_pred cccccChhhhhhhhc------CCCCCeeecCCCCCcchHH-HHHHHhcCccCCeeecCCCCC
Q 012001 414 TENEVNDEGLKSISR------CSKLSSLKLGICSNITDEG-LKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 414 ~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~ 468 (473)
++|.+++.+...+.. .++|+.|++.+| .++... .+.....+++|+.+++++|.+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred CCCCCCccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhhhcccccC
Confidence 999999887666653 467999999999 555222 223445799999999998863
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-17 Score=155.58 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=125.7
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
+|+.|++++|.+++.....+..+++|+.|+++++. +..... +.. +++|+.|+++++. ++.. ...++|+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~-l~~L~~L~Ls~N~-l~~l------~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LES-LSTLRTLDLNNNY-VQEL------LVGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTT-CTTCCEEECCSSE-EEEE------EECTTCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--ccc-CCCCCEEEecCCc-CCCC------CCCCCcCE
Confidence 45555555544444333344445555555554432 211110 222 4555555555443 1110 11245555
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecC
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (473)
|+++++.. ....+ ..+++|+.|++++|.+.......+. .+++|+.|++++ +.++......+...+++|+.|+++
T Consensus 104 L~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 104 LHAANNNI-SRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECcCCcC-CCCCc---cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecC
Confidence 55555422 11111 2345566666666655543333332 456666666665 344432222222345666667666
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCC
Q 012001 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSN 442 (473)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (473)
+|. ++.. ... ..+++|+.|+++++. ++.... .+ ..+++|+.|++++|.++.. +..+..+++|+.|++++| .
T Consensus 178 ~N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~~~~-~~-~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~ 248 (487)
T 3oja_A 178 YNF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-EF-QSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-G 248 (487)
T ss_dssp TSC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-GG-GGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-C
T ss_pred CCc-cccc--ccc-ccCCCCCEEECCCCC-CCCCCH-hH-cCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-C
Confidence 654 3322 111 136788888887754 443211 12 2778899999999888863 344667889999999999 7
Q ss_pred cchHHHHHHHhcCccCCeeecC
Q 012001 443 ITDEGLKHVGSTCSMLKELDLY 464 (473)
Q Consensus 443 l~~~~~~~~~~~~~~L~~L~l~ 464 (473)
++...++.+...+++|+.+++.
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 7755677777778888877764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-17 Score=143.53 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=53.3
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|+++++.++......+..+++|++|+++++..+.......+.. +++|++|+++++...... ...+..+++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~--~~~~~~l~~ 130 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELG--PGLFRGLAA 130 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEECTTSCCCCCC--TTTTTTCTT
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC-CcCCCEEECCCCcCCEEC--HhHhhCCcC
Confidence 34555555555554443333344445555555555432222221112222 445555555444311100 011233444
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCC
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (473)
|++|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|++++
T Consensus 131 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~ 186 (285)
T 1ozn_A 131 LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred CCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhc-CccccCEEECCC
Confidence 5555544442 2222222344455555555555544322211121 344444444444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-17 Score=149.83 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=141.4
Q ss_pred HHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHH
Q 012001 195 ELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI 274 (473)
Q Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (473)
..+...+++|++|+++++.++......+..+++|++|+++++. +.... .+.. +++|++|+++++.. +.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~-l~~L~~L~Ls~n~l-~~------- 94 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETL--DLES-LSTLRTLDLNNNYV-QE------- 94 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEE--EETT-CTTCCEEECCSSEE-EE-------
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcch--hhhh-cCCCCEEECcCCcc-cc-------
Confidence 3444466788888888887765555566667777777777643 22111 0222 55555555555431 11
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
+...++|+.|++++|.+...... .+++|++|+++++ .++.. ....+..++
T Consensus 95 ------------------------l~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N-~l~~~-~~~~~~~l~ 144 (317)
T 3o53_A 95 ------------------------LLVGPSIETLHAANNNISRVSCS----RGQGKKNIYLANN-KITML-RDLDEGCRS 144 (317)
T ss_dssp ------------------------EEECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSS-CCCSG-GGBCTGGGS
T ss_pred ------------------------ccCCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCC-CCCCc-cchhhhccC
Confidence 11225555666655554432211 3466777777663 44321 111234568
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCe
Q 012001 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (473)
+|++|+++++. ++......+...+++|+.|++++|. ++.. .... .+++|+.|++++|.++.... .+..+++|+.
T Consensus 145 ~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~-~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~ 218 (317)
T 3o53_A 145 RVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW 218 (317)
T ss_dssp SEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECCC-CCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred CCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc--cccc-ccccCCEEECCCCcCCcchh-hhcccCcccE
Confidence 88888888765 5544344444568999999999965 4432 1111 58999999999999987654 3778999999
Q ss_pred eecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 435 LKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 435 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
|++++| .++. ++.....+++|+.|++++|+-
T Consensus 219 L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 219 ISLRNN-KLVL--IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EECTTS-CCCE--ECTTCCCCTTCCEEECTTCCC
T ss_pred EECcCC-cccc--hhhHhhcCCCCCEEEccCCCc
Confidence 999999 8884 444456889999999999874
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-16 Score=140.23 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=136.1
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.++.++..++.. +. ...++|++|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|++|+
T Consensus 14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n-~i~~~~~~~~~~-~~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGN-RISHVPAASFRA-CRNLTILWLHSNVL-ARID-AAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSC-CT--TCCTTCSEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccC-Cc--CCCCCceEEEeeCC-cCCccCHHHccc-CCCCCEEECCCCcc-ceeC-HhhcCCccCCCEEe
Confidence 4555555544321 11 12568999999884 455433333444 78999999987752 2211 12245678888888
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++..+....+..+..+++|+.|++++|.+.......+. .+++|++|+++++ .++... ...+..+++|++|+++++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCC-cccccC-HhHhccCCCccEEECCCC
Confidence 8887545444456677888888888888877654333333 5778888888874 343211 122445678888888776
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 164 ~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 164 R-ISSVPERA-FRGLHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp C-CCEECTTT-TTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred c-ccccCHHH-hcCccccCEEECCCCc-ccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 4 44222111 2346777777777754 4433222222 6677777777777777666556667777777777777
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-17 Score=153.32 Aligned_cols=157 Identities=18% Similarity=0.098 Sum_probs=85.4
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++++|.+.......+.++++|++|+++++..+.......+.. +++|+.|+++++...... .+..+++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~ 219 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMP----NLTPLVG 219 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSSCC----CCTTCTT
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCcccccc----ccccccc
Confidence 45666666666666654333445566677777776655444333222333 666777776665422211 1334566
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|+.|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|+.|+++++ .++.. ....+..+++|+.|
T Consensus 220 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 220 LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHN-NLSSL-PHDLFTPLRYLVEL 295 (452)
T ss_dssp CCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CCSCC-CTTSSTTCTTCCEE
T ss_pred ccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCC-cCCcc-ChHHhccccCCCEE
Confidence 7777776653 3334455566667777777777665544333333 5566777777663 33321 11123345666666
Q ss_pred ecCCCC
Q 012001 360 DITCCR 365 (473)
Q Consensus 360 ~l~~~~ 365 (473)
++++++
T Consensus 296 ~L~~Np 301 (452)
T 3zyi_A 296 HLHHNP 301 (452)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 666543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-17 Score=152.83 Aligned_cols=202 Identities=20% Similarity=0.177 Sum_probs=86.7
Q ss_pred CCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCc
Q 012001 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (473)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (473)
.++++.|+++++. +.......+ ..+++|++|+++++ .+.......+..+++|++|++.++. ++......+
T Consensus 63 ~~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~------ 132 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIKVNSF-KHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF------ 132 (440)
T ss_dssp CTTCSEEECCSCC-CCEECTTTT-SSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS------
T ss_pred CCCCcEEEccCCc-CCeeCHHHh-hCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHh------
Confidence 3566666666553 222111222 25666666666665 3433333345555666666665542 221111111
Q ss_pred CceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEE
Q 012001 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKAL 257 (473)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (473)
..+++|++|++++|.+.......+..+++|++|+++++..+.......+.. +++|+.|
T Consensus 133 ---------------------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L 190 (440)
T 3zyj_A 133 ---------------------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYL 190 (440)
T ss_dssp ---------------------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEE
T ss_pred ---------------------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCee
Confidence 133444444444444433222333444455555554433333222112222 4455555
Q ss_pred ecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCC
Q 012001 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (473)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (473)
+++++....... +..+++|+.|+++++ .+....+..+..+++|+.|++++|.+.......+. .+++|+.|++++
T Consensus 191 ~L~~n~l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~ 264 (440)
T 3zyj_A 191 NLAMCNLREIPN----LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAH 264 (440)
T ss_dssp ECTTSCCSSCCC----CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTT
T ss_pred cCCCCcCccccc----cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCC
Confidence 554443111100 223445555555544 22223334444555555555555554433222222 345555555554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-17 Score=149.27 Aligned_cols=225 Identities=15% Similarity=0.177 Sum_probs=150.6
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
..++++.|+++++.+. .....+.++++|++|+++++. +... ...+.. +++|++|+++++...
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~~l-p~~~~~-l~~L~~L~Ls~n~l~-------------- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMEL-PDTMQQ-FAGLETLTLARNPLR-------------- 140 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CCCC-CSCGGG-GTTCSEEEEESCCCC--------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-ccch-hHHHhc-cCCCCEEECCCCccc--------------
Confidence 4589999999999886 455567778889999988743 3311 112222 556666666554321
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHH--------hhCCCCCeEecCCCCCCChHHHHHHHH
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG--------NWHGSLKELSLSKCSGVTDEELSFVVQ 351 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~ 351 (473)
.++..+..+++|+.|++++|......+..+. ..+++|++|+++++ .++ .++..+.
T Consensus 141 --------------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~ 203 (328)
T 4fcg_A 141 --------------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIA 203 (328)
T ss_dssp --------------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGG
T ss_pred --------------cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhc
Confidence 2233344555555555555443322222111 14799999999984 554 2444567
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
.+++|++|++++|. ++. +......+++|+.|++++|...... ......+++|+.|++++|.+.......+..+++
T Consensus 204 ~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 88999999999876 442 2222457899999999997754321 112237899999999999887777777889999
Q ss_pred CCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
|+.|++++|..++ .++.....+++|+.+.+...
T Consensus 279 L~~L~L~~n~~~~--~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCC--CCCGGGGGSCTTCEEECCGG
T ss_pred CCEEeCCCCCchh--hccHHHhhccCceEEeCCHH
Confidence 9999999994444 35555668999999987643
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.1e-16 Score=137.07 Aligned_cols=207 Identities=19% Similarity=0.177 Sum_probs=119.0
Q ss_pred hCCCCcEEeeccccCCCCccccc--ccCcccCeeeccCCCCCChHHHHHHHhc----CCCCcEEecCCCCccchHHHHHH
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPV--VKLQYLEDLVLEGCHGIDDDGLASVEYS----CKSLKALNLSKCQNISHVGLSSL 273 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~ 273 (473)
.+++|++|++++|.+++.....+ ..+++|++|+++++. +... ...+... .++|++|+++++..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l--------- 161 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATR-DAWLAELQQWLKPGLKVLSIAQAHS--------- 161 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSS-SSHHHHHHTTCCTTCCEEEEESCSC---------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccch-hHHHHHHHHhhcCCCcEEEeeCCCC---------
Confidence 57899999999998876666655 678888888888743 3322 1122220 15666666665542
Q ss_pred HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhH--HHHH-HhhCCCCCeEecCCCCCCCh--HHHHH
Q 012001 274 IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAI-GNWHGSLKELSLSKCSGVTD--EELSF 348 (473)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l-~~~~~~L~~L~l~~~~~~~~--~~~~~ 348 (473)
....+..+..+++|+.|++++|.+.... +..+ ...+++|++|+++++ .++. .....
T Consensus 162 ------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 222 (312)
T 1wwl_A 162 ------------------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSA 222 (312)
T ss_dssp ------------------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHH
T ss_pred ------------------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHH
Confidence 1122233445556666666665544321 1121 024566666666663 4442 11223
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhc
Q 012001 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428 (473)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (473)
++..+++|++|+++++. ++..........+++|+.|+++++. ++. +.... .++|+.|++++|.+++.. .+..
T Consensus 223 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~--~~~L~~L~Ls~N~l~~~p--~~~~ 294 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQ--VPKGL--PAKLSVLDLSYNRLDRNP--SPDE 294 (312)
T ss_dssp HHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSS--CCSSC--CSEEEEEECCSSCCCSCC--CTTT
T ss_pred HHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cCh--hhhhc--cCCceEEECCCCCCCCCh--hHhh
Confidence 34455677777776654 3321100111235788888888754 441 11111 168999999999888763 2778
Q ss_pred CCCCCeeecCCCCCcch
Q 012001 429 CSKLSSLKLGICSNITD 445 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~ 445 (473)
+++|+.|++++| .+++
T Consensus 295 l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp SCEEEEEECTTC-TTTC
T ss_pred CCCCCEEeccCC-CCCC
Confidence 999999999999 6664
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=140.40 Aligned_cols=123 Identities=17% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
+++|+.|++++|.+..- ....++|+.|+++++ .++. ++ ..+++|+.|++++|. ++... ..+++
T Consensus 180 ~~~L~~L~Ls~N~l~~l-----~~~~~~L~~L~L~~N-~l~~--l~---~~~~~L~~L~Ls~N~-L~~lp-----~~l~~ 242 (622)
T 3g06_A 180 PSGLQELSVSDNQLASL-----PTLPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGNR-LTSLP-----VLPSE 242 (622)
T ss_dssp CTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECCSSC-CSCCC-----CCCTT
T ss_pred CCCCcEEECCCCCCCCC-----CCccchhhEEECcCC-cccc--cC---CCCCCCCEEEccCCc-cCcCC-----CCCCc
Confidence 45555555555554421 012355666666553 3321 11 123566666666553 33211 34566
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHH
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLK 449 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 449 (473)
|+.|++++|. ++. +. ..+++|+.|++++|.++.. +..+..+++|+.|++++| .++.....
T Consensus 243 L~~L~Ls~N~-L~~--lp---~~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~ 302 (622)
T 3g06_A 243 LKELMVSGNR-LTS--LP---MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQ 302 (622)
T ss_dssp CCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHH
T ss_pred CcEEECCCCC-CCc--CC---cccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHH
Confidence 6777766643 332 11 1456677777777766633 344666777777777777 56654333
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-14 Score=126.92 Aligned_cols=172 Identities=18% Similarity=0.228 Sum_probs=136.9
Q ss_pred CcccceeeccccccCchhHHH----hhh-CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH
Q 012001 277 ADYLQQLILAYSFWVSADLSK----CLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~----~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 351 (473)
.++|++|+++++. +...... .+. ..++|+.|++++|.+++.++..+...+++|++|++++ +.+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHH
Confidence 4789999999885 4433333 333 2369999999999999999888887788999999999 4788877666543
Q ss_pred ----hCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCCCHHHHHHHH---hcCccCCeeeecccccChh
Q 012001 352 ----SHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDE 421 (473)
Q Consensus 352 ----~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 421 (473)
..++|++|++++|. +++.+...++ ..+++|+.|++++|. +++.+...+. ..+++|+.|++++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 35889999999986 8877766554 468999999999965 8887765554 3677999999999999998
Q ss_pred hhhhhh----cCCCCCeeecCCCCCcchHHHHHHHh
Q 012001 422 GLKSIS----RCSKLSSLKLGICSNITDEGLKHVGS 453 (473)
Q Consensus 422 ~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (473)
+...++ .+++|++|++++| .+++.+...+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 877665 4799999999999 899988887764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=125.24 Aligned_cols=190 Identities=14% Similarity=0.166 Sum_probs=140.1
Q ss_pred CCCCcEEecCCCCccchHHHHH---HHhc-CcccceeeccccccCchhHHH-hhhCCCCCCeeEecCCcCChhHHHHHHh
Q 012001 251 CKSLKALNLSKCQNISHVGLSS---LIKG-ADYLQQLILAYSFWVSADLSK-CLHNFPMLQSIKFEDCPVARSGIKAIGN 325 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 325 (473)
.+.|+.|+++++. ++..+... .+.. .++|++|+++++. +.+.... ....+++|+.|++++|.+++.+...++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 5789999999987 55544333 3332 3699999999985 4444333 3345678999999999999988887764
Q ss_pred ----hCCCCCeEecCCCCCCChHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCCCH
Q 012001 326 ----WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSW 395 (473)
Q Consensus 326 ----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 395 (473)
..++|++|++++| .+++.+...+ +..+++|++|++++|. +++.+...++ ...++|+.|++++|. +++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCH
Confidence 3588999999995 6777655444 4567999999999986 8887765554 357899999999965 888
Q ss_pred HHHHHHHh---cCccCCeeeecccccChhhhhhhhcCC--C---CCeee--cCCCCCcchH
Q 012001 396 EAFVLIGQ---QCQYLEELDITENEVNDEGLKSISRCS--K---LSSLK--LGICSNITDE 446 (473)
Q Consensus 396 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~--~---L~~L~--l~~~~~l~~~ 446 (473)
.+...+.. .+++|++|++++|.+++.+...+.... . |+.+. +..+ .+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~~ 285 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCHH
Confidence 77666543 579999999999999999988887432 2 77777 6666 66554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-16 Score=148.64 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=162.5
Q ss_pred cCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCC
Q 012001 224 KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (473)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 303 (473)
.+++|+.|+++++ .+.......+.. +++|+.|+++++....... +..+++|+.|+++++. +. .+...+
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~-----~l~~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAP-FTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQ-----ELLVGP 99 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTT-CTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EE-----EEEECT
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhC-CCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CC-----CCCCCC
Confidence 4569999999995 455443344555 8999999999987433322 5678999999999884 22 123458
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (473)
+|+.|++++|.+...... .+++|+.|+++++ .++.. .+..+..+++|+.|+++++. ++......+...+++|+
T Consensus 100 ~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS----RGQGKKNIYLANN-KITML-RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE 172 (487)
T ss_dssp TCCEEECCSSCCCCEEEC----CCSSCEEEECCSS-CCCSG-GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred CcCEEECcCCcCCCCCcc----ccCCCCEEECCCC-CCCCC-CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCccc
Confidence 999999999988764432 4689999999984 55532 12234567999999999875 65544444445689999
Q ss_pred EEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 384 SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 384 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
.|++++|. ++.. .... .+++|+.|++++|.++.... .+..+++|+.|++++| .++. ++.....+++|+.|++
T Consensus 173 ~L~Ls~N~-l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 173 HLNLQYNF-IYDV--KGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDL 244 (487)
T ss_dssp EEECTTSC-CCEE--ECCC-CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEEC
T ss_pred EEecCCCc-cccc--cccc-cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCC-cCcc--cchhhccCCCCCEEEc
Confidence 99999966 5432 1122 58999999999999988654 3778999999999999 8884 5555567899999999
Q ss_pred CCCCCc
Q 012001 464 YRFVTF 469 (473)
Q Consensus 464 ~~c~~l 469 (473)
++|+-.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 998743
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-15 Score=142.09 Aligned_cols=216 Identities=20% Similarity=0.057 Sum_probs=139.7
Q ss_pred CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
+++|++|++++|.++. ++. .+++|++|+++++. +.... ..+++|+.|+++++.. +.. ....++|
T Consensus 80 l~~L~~L~Ls~N~l~~--lp~--~l~~L~~L~Ls~N~-l~~l~-----~~l~~L~~L~L~~N~l-~~l-----p~~l~~L 143 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS--LPV--LPPGLLELSIFSNP-LTHLP-----ALPSGLCKLWIFGNQL-TSL-----PVLPPGL 143 (622)
T ss_dssp CTTCCEEEECSCCCSC--CCC--CCTTCCEEEECSCC-CCCCC-----CCCTTCCEEECCSSCC-SCC-----CCCCTTC
T ss_pred CCCCCEEEcCCCcCCc--CCC--CCCCCCEEECcCCc-CCCCC-----CCCCCcCEEECCCCCC-CcC-----CCCCCCC
Confidence 3455555555554432 111 34555555555532 22211 1245666666665542 111 1124677
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
++|+++++.. .. ++ ..+++|+.|++.+|.+..-. ..+++|+.|+++++ .++. ++ ...++|+.|+
T Consensus 144 ~~L~Ls~N~l-~~-l~---~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N-~l~~--l~---~~~~~L~~L~ 207 (622)
T 3g06_A 144 QELSVSDNQL-AS-LP---ALPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDN-QLAS--LP---TLPSELYKLW 207 (622)
T ss_dssp CEEECCSSCC-SC-CC---CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEE
T ss_pred CEEECcCCcC-CC-cC---CccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCC-CCCC--CC---CccchhhEEE
Confidence 7777776632 21 11 23568899999998876522 36789999999984 5543 11 1347999999
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+++|. ++.. ...+++|+.|++++|. ++... ..+++|+.|++++|.++.... .+++|+.|++++|
T Consensus 208 L~~N~-l~~l-----~~~~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 208 AYNNR-LTSL-----PALPSGLKELIVSGNR-LTSLP-----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN 271 (622)
T ss_dssp CCSSC-CSSC-----CCCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CcCCc-cccc-----CCCCCCCCEEEccCCc-cCcCC-----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC
Confidence 99875 4421 1246899999999964 54322 377999999999998885432 5789999999999
Q ss_pred CCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 441 SNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 441 ~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
.++ .++.....+++|+.|++++|+
T Consensus 272 -~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 272 -QLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -CCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred -CCC--cCCHHHhhccccCEEEecCCC
Confidence 888 345556689999999999987
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-15 Score=133.49 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=109.4
Q ss_pred CCCCcEEecCCCCccchHHHHHHH-hcCcccceeeccccccCch---hHHHhhhCCCCCCeeEecCCcCChhHHHHHHhh
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLI-KGADYLQQLILAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW 326 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 326 (473)
.++|++|+++++....... ..++ ..+++|++|+++++..... .....+..+++|+.|++++|.+.......+. .
T Consensus 90 ~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-A 167 (310)
T ss_dssp HSCCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-C
T ss_pred cCceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-c
Confidence 3556666666654221110 0011 4456667777666532211 0112233566777777777766543333332 5
Q ss_pred CCCCCeEecCCCCCCChHHHHHH--HHhCCCCcEEecCCCCCCCHH--HHHHHHhcCCCCCEEEccCCCCCCHHHHHHHH
Q 012001 327 HGSLKELSLSKCSGVTDEELSFV--VQSHKELRKLDITCCRKITYA--SINSITKTCTSLTSLRMECCKLVSWEAFVLIG 402 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (473)
+++|++|+++++.-....++... +..+++|++|++++|. ++.. ....+...+++|+.|+++++. ++......+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~ 245 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAP 245 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHH
Confidence 56777777776322222222111 1345677777777664 4421 122233456777777777744 4332111111
Q ss_pred hc---CccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 403 QQ---CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 403 ~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
. +++|++|++++|.++.. +..+ .++|+.|++++| +++.. +. ...+++|+.|++++++
T Consensus 246 -~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N-~l~~~--~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 -RCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSN-RLNRA--PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -SCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSC-CCCSC--CC-TTSCCCCSCEECSSTT
T ss_pred -hccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCC-cCCCC--ch-hhhCCCccEEECcCCC
Confidence 2 26788888888877743 2223 368888888888 77642 22 3467888888888775
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=126.68 Aligned_cols=229 Identities=16% Similarity=0.116 Sum_probs=126.5
Q ss_pred CcCceeecccCCCCCHHHHHHHHh--hCCCCcEEeeccccCCCCccccc--ccCcccCeeeccCCCCCCh----HHHHHH
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVAL--KCQEIRTLDLSYLPITEKCLPPV--VKLQYLEDLVLEGCHGIDD----DGLASV 247 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~----~~~~~l 247 (473)
..++.+.+.++ .+++..+..+.. .+++|++|++++|.+.+.....+ ..+++|++|+++++. +.. .....+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 34566666654 244443332221 34679999999998876666666 778899999998854 332 111122
Q ss_pred HhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHH-H--HHH
Q 012001 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI-K--AIG 324 (473)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~--~l~ 324 (473)
. .+++|++|+++++.. ....+..+..+++|+.|++++|.+..... . ...
T Consensus 142 ~-~~~~L~~L~Ls~n~l---------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHS---------------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp T-BCSCCCEEEEECCSS---------------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred h-hccCCCEEEeeCCCc---------------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 2 256666666665542 11222334445555555555555433211 0 001
Q ss_pred hhCCCCCeEecCCCCCCCh--HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc---CCCCCEEEccCCCCCCHHHHH
Q 012001 325 NWHGSLKELSLSKCSGVTD--EELSFVVQSHKELRKLDITCCRKITYASINSITKT---CTSLTSLRMECCKLVSWEAFV 399 (473)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~ 399 (473)
..+++|++|++++| .++. .....++..+++|++|+++++. +++.....+ .. +++|+.|+++++. ++. +.
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~--lp 267 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA-PRCMWSSALNSLNLSFAG-LEQ--VP 267 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC-SSCCCCTTCCCEECCSSC-CCS--CC
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH-HhccCcCcCCEEECCCCC-CCc--hh
Confidence 14556666666663 3432 1111234455666666666654 332110001 12 2678888887754 442 11
Q ss_pred HHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 400 LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
.. -.++|+.|++++|.++... .+..+++|+.|++++| .+++
T Consensus 268 ~~--~~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 268 KG--LPAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp SC--CCSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSST-TTSC
T ss_pred hh--hcCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCC-CCCC
Confidence 11 2378999999999888642 2567899999999999 7664
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-14 Score=125.90 Aligned_cols=196 Identities=17% Similarity=0.185 Sum_probs=135.0
Q ss_pred ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhh
Q 012001 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (473)
Q Consensus 221 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (473)
....+++|++|++.++. +... ..+.. +++|+.|+++++....... +..+++|++|+++++. +.. ...+.
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~l--~~~~~-l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~--~~~~~ 104 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTG-VTTI--EGVQY-LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKN--VSAIA 104 (308)
T ss_dssp CHHHHHTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSC--CGGGT
T ss_pred cHHHcCCcCEEEeeCCC-ccCc--hhhhc-cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCC--chhhc
Confidence 34468899999999854 4332 23444 8999999999876333222 5678899999998875 332 13577
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (473)
.+++|+.|++++|.+.+.. .+ ..+++|++|+++++ .+++. .. +..+++|+.|++++|. +++... ...++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~ 173 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVT--PL-AGLSNLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNAQ-VSDLTP---LANLS 173 (308)
T ss_dssp TCTTCCEEECTTSCCCCCG--GG-TTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSSC-CCCCGG---GTTCT
T ss_pred CCCCCCEEECCCCCCCCch--hh-cCCCCCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCCc-CCCChh---hcCCC
Confidence 8889999999998876532 23 37788999998884 44432 11 5677888888888775 443222 35678
Q ss_pred CCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
+|+.|+++++. +++.. . ...+++|+.|++++|.+++.. .+..+++|+.|++++| .++.
T Consensus 174 ~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 174 KLTTLKADDNK-ISDIS--P-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp TCCEEECCSSC-CCCCG--G-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred CCCEEECCCCc-cCcCh--h-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence 88888888854 44322 1 237888888888888887665 3677888888888888 6653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=112.28 Aligned_cols=105 Identities=14% Similarity=0.219 Sum_probs=84.9
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhc---CccCCeeeeccc-ccChhhhhhhhcC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ---CQYLEELDITEN-EVNDEGLKSISRC 429 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~-~~~~~~~~~l~~~ 429 (473)
..|++|++++|. +++.++..+ ..|++|+.|++++|..++|.++..+... +++|++|+|++| .+||.++..++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 367888888886 888877776 4788888888888888888888888742 468999999997 6999999888889
Q ss_pred CCCCeeecCCCCCcchHHH--HHHHhcCccCCe
Q 012001 430 SKLSSLKLGICSNITDEGL--KHVGSTCSMLKE 460 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~ 460 (473)
++|++|++++|+++++.++ ..+.+.+|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999999988998763 455567887764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-14 Score=123.75 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=147.5
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++.++.+.. +..+..+++|+.|+++++ .+..... +.. +++|++|+++++...... .+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN-QITDLAP--LKN-LTKITELELSGNPLKNVS----AIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GTT-CCSCCEEECCSCCCSCCG----GGTTCTT
T ss_pred HcCCcCEEEeeCCCccC--chhhhccCCCCEEEccCC-cCCCChh--Hcc-CCCCCEEEccCCcCCCch----hhcCCCC
Confidence 45799999999998764 456788999999999986 4444332 444 899999999998733321 2567899
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++.. ... ..+..+++|+.|++++|.+.+... +. .+++|+.|+++++ .+++. .. +..+++|+.|
T Consensus 109 L~~L~l~~n~l-~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~-~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L 178 (308)
T 1h6u_A 109 IKTLDLTSTQI-TDV--TPLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNA-QVSDL--TP-LANLSKLTTL 178 (308)
T ss_dssp CCEEECTTSCC-CCC--GGGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEE
T ss_pred CCEEECCCCCC-CCc--hhhcCCCCCCEEECCCCccCcCcc--cc-CCCCccEEEccCC-cCCCC--hh-hcCCCCCCEE
Confidence 99999998853 322 237899999999999998876443 33 7899999999985 55542 22 6678999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhh
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL 423 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 423 (473)
+++++. +++... ...+++|+.|++++|. +++.. .+ ..+++|+.|++++|.++....
T Consensus 179 ~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~l-~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 179 KADDNK-ISDISP---LASLPNLIEVHLKNNQ-ISDVS--PL-ANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECCSSC-CCCCGG---GGGCTTCCEEECTTSC-CCBCG--GG-TTCTTCCEEEEEEEEEECCCE
T ss_pred ECCCCc-cCcChh---hcCCCCCCEEEccCCc-cCccc--cc-cCCCCCCEEEccCCeeecCCe
Confidence 999876 543322 3679999999999965 54432 23 489999999999998877543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-15 Score=131.80 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=96.6
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
+++++|+++++.++......+.++++|++|+++++ .+.......+.. +++|++|+++++..... . ...+..+++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~-~-~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS-LSHLSTLILTGNPIQSL-A-LGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTT-CTTCCEEECTTCCCCEE-C-TTTTTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccC-CcCCCEEECCCCccCcc-C-hhhhcCCcccc
Confidence 35667777666665444445556666666666663 233222112222 55555555555431110 0 01123344455
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
+|+++++. +.......+..+++|+.|++++|.+.... ++..+..+++|++|++
T Consensus 104 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFK--------------------------LPEYFSNLTNLEHLDL 156 (276)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCC--------------------------CCGGGGGCTTCCEEEC
T ss_pred EEECCCCC-ccccCchhcccCCCCCEEECcCCccceec--------------------------CchhhccCCCCCEEEC
Confidence 55544432 11111112344445555555544433211 1222344555555555
Q ss_pred CCCCCCCHH---HHHHHHhcCCCCC-EEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 362 TCCRKITYA---SINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 362 ~~~~~~~~~---~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
+++. ++.. .+..+ ..++.|. .|+++++. ++......+ ...+|+.|++++|.++......+..+++|+.|++
T Consensus 157 s~N~-l~~~~~~~~~~l-~~L~~l~l~L~ls~n~-l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 157 SSNK-IQSIYCTDLRVL-HQMPLLNLSLDLSLNP-MNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CSSC-CCEECGGGGHHH-HTCTTCCEEEECCSSC-CCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred CCCC-CCcCCHHHhhhh-hhccccceeeecCCCc-ccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 5543 2221 11111 1233333 56666633 332111111 3347888888888777666555667888888888
Q ss_pred CCC
Q 012001 438 GIC 440 (473)
Q Consensus 438 ~~~ 440 (473)
++|
T Consensus 232 ~~N 234 (276)
T 2z62_A 232 HTN 234 (276)
T ss_dssp CSS
T ss_pred cCC
Confidence 877
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-14 Score=126.82 Aligned_cols=181 Identities=17% Similarity=0.121 Sum_probs=124.3
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
.++++.|+++++.. .... ...+..+++|++|+++++. +.......+..+++|+.|+++++.+.......+. .+++|
T Consensus 36 ~~~l~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L 111 (270)
T 2o6q_A 36 PADTKKLDLQSNKL-SSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD-QLVNL 111 (270)
T ss_dssp CTTCSEEECCSSCC-SCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT-TCSSC
T ss_pred CCCCCEEECcCCCC-CeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc-cccCC
Confidence 35799999998763 2211 1124568899999998874 3333344567889999999999987654433333 67899
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
++|+++++ .++... ...+..+++|++|+++++. ++..... ....+++|+.|+++++. ++......+. .+++|+.
T Consensus 112 ~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~ 185 (270)
T 2o6q_A 112 AELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPKG-VFDKLTSLKELRLYNNQ-LKRVPEGAFD-KLTELKT 185 (270)
T ss_dssp CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCE
T ss_pred CEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc-CCccCHh-HccCCcccceeEecCCc-CcEeChhHhc-cCCCcCE
Confidence 99999884 444321 2234577899999999875 4432221 12467899999998864 4432222222 6889999
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCC
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (473)
|++++|.++......+..+++|+.|++++|+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 9999998887766667788999999999883
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-14 Score=125.18 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=84.3
Q ss_pred ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhh
Q 012001 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (473)
Q Consensus 221 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (473)
....+++|+.|.+.++. +... ..+.. +++|+.|+++++...... .+..+++|++|+++++. +.......+.
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~--~~l~~-l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred ccccccceeeeeeCCCC-cccc--ccccc-CCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCc-cCccChhHhc
Confidence 34456777777777643 3221 12333 677777777766522211 23445666666666552 3323333345
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (473)
.+++|+.|++++|.+.......+. .+++|++|+++++ .++.. ....+. .++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~--------------------------~l~ 157 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHN-QLQSL-PKGVFD--------------------------KLT 157 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCC-CTTTTT--------------------------TCT
T ss_pred CCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCC-ccCcc-CHHHhc--------------------------cCc
Confidence 555666666666554432221121 3445555555442 22211 011122 344
Q ss_pred CCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|+.|++++|. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 158 ~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 158 NLTELDLSYNQ-LQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCC-cCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 55555555432 221111111 14555666666665555544444455566666666655
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=107.94 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=79.8
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHh---CCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS---HKELRKLDITCCRKITYASINSITKTC 379 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (473)
.+|+.|++++|.+++.++..+. .+++|++|++++|..++|.++..+... +++|++|++++|.++++.++..+. .+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 3678888888888888887775 788888888888888888887777642 457888888888888888887775 57
Q ss_pred CCCCEEEccCCCCCCHHH--HHHHHhcCccCC
Q 012001 380 TSLTSLRMECCKLVSWEA--FVLIGQQCQYLE 409 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~ 409 (473)
++|++|++++|+.+++.+ ...+...+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 888888888888888765 344455666654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-15 Score=128.96 Aligned_cols=182 Identities=17% Similarity=0.169 Sum_probs=113.6
Q ss_pred cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
.+++|++|+++++ .+.......+..+++|+.|++++|.+.......+. .+++|++|+++++ .+.... ...+..+++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~ 125 (276)
T 2z62_A 50 SFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVET-NLASLE-NFPIGHLKT 125 (276)
T ss_dssp TCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTS-CCCCST-TCCCTTCTT
T ss_pred cccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCC-CccccC-chhcccCCC
Confidence 3455555555554 22222333456667777777777766544333333 5677777777763 332210 111456789
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCH---HHHHHHHhcCccCC-eeeecccccChhhhhhhhcCCC
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW---EAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
|++|+++++. ++...+......+++|+.|++++|. ++. ..+..+. .++.|. .|++++|.++......+ ...+
T Consensus 126 L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~-~~~~ 201 (276)
T 2z62_A 126 LKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF-KEIR 201 (276)
T ss_dssp CCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS-CSCC
T ss_pred CCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhh-hccccceeeecCCCcccccCcccc-CCCc
Confidence 9999998875 4432222334578999999999965 443 3344333 444444 89999999887654433 3558
Q ss_pred CCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
|+.|++++| .++... ......+++|++|++++++
T Consensus 202 L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 202 LKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEEECCSS-CCSCCC-TTTTTTCCSCCEEECCSSC
T ss_pred ccEEECCCC-ceeecC-HhHhcccccccEEEccCCc
Confidence 999999999 787532 2334579999999999654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-14 Score=125.14 Aligned_cols=201 Identities=14% Similarity=0.009 Sum_probs=116.7
Q ss_pred cccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhC
Q 012001 222 VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (473)
Q Consensus 222 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (473)
+.++++++++++.++ .+..... ...++++.|+++++..... . ...+..+++|+.|+++++. +... . ....
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N~l~~~-~-~~~~~~l~~L~~L~L~~n~-l~~~-~-~~~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP----DLPKDTTILHLSENLLYTF-S-LATLMPYTRLTQLNLDRAE-LTKL-Q-VDGT 75 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTSCCSEE-E-GGGGTTCTTCCEEECTTSC-CCEE-E-CCSC
T ss_pred ccccCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCCcCCcc-C-HHHhhcCCCCCEEECCCCc-cCcc-c-CCCC
Confidence 456778888888773 3432211 1135788888887763221 1 1224567888888888764 2221 1 1256
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
+++|+.|++++|.+..- ...+ ..+++|+.|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++
T Consensus 76 l~~L~~L~Ls~N~l~~l-~~~~-~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~ 149 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSL-PLLG-QTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPP-GLLTPTPK 149 (290)
T ss_dssp CTTCCEEECCSSCCSSC-CCCT-TTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTT
T ss_pred CCcCCEEECCCCcCCcC-chhh-ccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccCh-hhcccccC
Confidence 77888888888876521 1111 25678888888773 44321 01234566788888887764 432211 11235677
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCC
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (473)
|+.|+++++. ++..... ....+++|+.|++++|.++... ..+...++|+.|++++|+
T Consensus 150 L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~L~~N~l~~ip-~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNN-LTELPAG-LLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSC-CSCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCc-CCccCHH-HhcCcCCCCEEECCCCcCCccC-hhhcccccCCeEEeCCCC
Confidence 8888887743 4322111 1225677888888887776433 344456678888887773
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-14 Score=121.34 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=98.2
Q ss_pred hhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012001 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (473)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (473)
+..+++|+.|++++|.+.+. ..+. .+++|++|+++++ .++.. ....+..+++|++|+++++. ++.... .....
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~ 131 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALK-ELTNLTYLILTGN-QLQSL-PNGVFDKLTNLKELVLVENQ-LQSLPD-GVFDK 131 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGT-TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT-TTTTT
T ss_pred cccCCCCcEEECCCCCCCCc--hhhc-CCCCCCEEECCCC-ccCcc-ChhHhcCCcCCCEEECCCCc-CCccCH-HHhcc
Confidence 34455555555555554432 1222 4555666666553 33211 11123455677777776654 332111 11245
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccC
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 458 (473)
+++|+.|++++|. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++| .++... ......+++|
T Consensus 132 l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 207 (272)
T 3rfs_A 132 LTNLTYLNLAHNQ-LQSLPKGVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSL 207 (272)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTC
T ss_pred CCCCCEEECCCCc-cCccCHHHh-ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccC-HHHHhCCcCC
Confidence 7788888888764 443221112 37899999999999999877666788999999999999 887522 2334589999
Q ss_pred CeeecCCCCC
Q 012001 459 KELDLYRFVT 468 (473)
Q Consensus 459 ~~L~l~~c~~ 468 (473)
++|++++|+-
T Consensus 208 ~~L~l~~N~~ 217 (272)
T 3rfs_A 208 QYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCB
T ss_pred CEEEccCCCc
Confidence 9999998753
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-13 Score=112.05 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=68.5
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+++|++|+++++.. . .++ .+..+++|+.|++++|.+.+.. .+. .+++|++|++++ +.+++.. ...+..+++|
T Consensus 43 l~~L~~L~l~~n~i-~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~-n~l~~~~-~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINV-T-DLT-GIEYAHNIKDLTINNIHATNYN--PIS-GLSNLERLRIMG-KDVTSDK-IPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCC-S-CCT-TGGGCTTCSEEEEESCCCSCCG--GGT-TCTTCCEEEEEC-TTCBGGG-SCCCTTCTTC
T ss_pred cCCccEEeccCCCc-c-ChH-HHhcCCCCCEEEccCCCCCcch--hhh-cCCCCCEEEeEC-CccCccc-ChhhcCCCCC
Confidence 45667777666532 2 222 4556666666666666443321 222 455666666655 2333211 1112344555
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeee
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (473)
++|++++|. +++.....+ ..+++|+.|++++|..+++.. .+ ..+++|+.|++++|.+++.. .+..+++|+.|+
T Consensus 115 ~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l-~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSA-HDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSB-CBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GG-GGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred CEEEecCCc-cCcHhHHHH-hhCCCCCEEEccCCCCccccH--hh-cCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 555555543 333222222 345555555555543233221 11 14455555555555544422 344455555555
Q ss_pred cCCC
Q 012001 437 LGIC 440 (473)
Q Consensus 437 l~~~ 440 (473)
+++|
T Consensus 188 l~~N 191 (197)
T 4ezg_A 188 AFSQ 191 (197)
T ss_dssp ECBC
T ss_pred eeCc
Confidence 5555
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.7e-13 Score=115.87 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=101.0
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++|+.|+++++......+ +..+++|++|+++++.. ..... +..+++|+.|++++|.+.+.. .+. .+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~-~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKL-TDIKP--LANLKNLGWLFLDENKVKDLS--SLK-DLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCGG--GGT-TCTTC
T ss_pred cCcccEEEccCCCcccChh----HhcCCCCCEEEccCCcc-CCCcc--cccCCCCCEEECCCCcCCCCh--hhc-cCCCC
Confidence 5678888887765322211 45567788888777632 22221 667777888888777765522 232 56777
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
++|+++++ .+++. ..+..+++|+.|++++|. ++.. .....+++|+.|++++|. +++... ...+++|+.
T Consensus 115 ~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQN 182 (291)
T ss_dssp CEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCE
T ss_pred CEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCc-cccchh---hcCCCccCE
Confidence 77777774 44431 124456777777777664 4332 122456777777777654 433221 236677777
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
|++++|.+++. ..+..+++|+.|++++| .++.
T Consensus 183 L~L~~N~i~~l--~~l~~l~~L~~L~l~~n-~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECLN 214 (291)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEEEEEE-EEEC
T ss_pred EECCCCcCCCC--hhhccCCCCCEEECcCC-cccC
Confidence 77777766654 23566777777777776 5543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-13 Score=119.95 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=92.9
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
..+++|++|+++++. +.......+..+++|+.|+++++.+.......+. .+++|++|+++++ .++... ...+..++
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~ 157 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYN-ELQSLP-KGVFDKLT 157 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-cCcCCCEEECCCC-cCCccC-HhHccCCc
Confidence 345666666666653 3333334567889999999999987765444343 7899999999984 444321 22355789
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
+|++|+++++. ++...... ...+++|+.|+++++. ++......+ ..+++|+.|++++|.+..
T Consensus 158 ~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 158 SLKELRLYNNQ-LKRVPEGA-FDKLTELKTLKLDNNQ-LKRVPEGAF-DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSSCBCC
T ss_pred ccceeEecCCc-CcEeChhH-hccCCCcCEEECCCCc-CCcCCHHHh-ccccCCCEEEecCCCeeC
Confidence 99999999875 44322211 2468999999999964 543222222 378999999999987643
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-14 Score=122.58 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=68.1
Q ss_pred hCCCCc---EEecCCCCCCCHHHHHHHHhcCCCCC-EEEccCCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhh
Q 012001 352 SHKELR---KLDITCCRKITYASINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSI 426 (473)
Q Consensus 352 ~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l 426 (473)
.+++|+ .|+++++..++......+ ..+++|+ .|+++++. ++......+ ..++|+.|++++| .++......+
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~-l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNG-FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCC-CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTT
T ss_pred cccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCCC-CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHh
Confidence 444555 666666533432221111 3567777 78777643 432211112 2378999999999 4887766667
Q ss_pred hcC-CCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCc
Q 012001 427 SRC-SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 427 ~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 469 (473)
..+ ++|+.|++++| .++. ++.. .+++|+.|++.+|..+
T Consensus 201 ~~l~~~L~~L~l~~N-~l~~--l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQT-SVTA--LPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCSBCCSEEECTTC-CCCC--CCCT--TCTTCSEEECTTC---
T ss_pred hccccCCcEEECCCC-cccc--CChh--HhccCceeeccCccCC
Confidence 788 99999999998 7774 2221 5889999999988764
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-14 Score=122.45 Aligned_cols=111 Identities=9% Similarity=0.024 Sum_probs=55.6
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccC---eeeccCCCCCChHHHHHHHhcCCCCc-EEecCCCCccchHHHHHHHh
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLE---DLVLEGCHGIDDDGLASVEYSCKSLK-ALNLSKCQNISHVGLSSLIK 275 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~ 275 (473)
.+++|++|++++|.++. ++.+..+++|+ .|+++++..+.......+.. +++|+ .|+++++.. ..... ..+.
T Consensus 103 ~l~~L~~L~l~~n~l~~--lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-l~~L~~~L~l~~n~l-~~i~~-~~~~ 177 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM--FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-LCNETLTLKLYNNGF-TSVQG-YAFN 177 (239)
T ss_dssp CCTTCCEEEEEEECCCS--CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTT-TBSSEEEEECCSCCC-CEECT-TTTT
T ss_pred CCCCCCEEeCCCCCCcc--ccccccccccccccEEECCCCcchhhcCcccccc-hhcceeEEEcCCCCC-cccCH-hhcC
Confidence 45677777777766543 33355555565 67776642343322222333 56666 666665542 11110 0111
Q ss_pred cCcccceeeccccccCchhHHHhhhCC-CCCCeeEecCCcCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVA 316 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 316 (473)
.++|++|+++++..+.......+..+ ++|+.|+++++.+.
T Consensus 178 -~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 178 -GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp -TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred -CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 24666666666532332323344555 66666666665544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-12 Score=104.35 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=72.8
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
+++|++|+++++ .+...+ ....+++|++|++++|.+++..+..+..+++|+.|+++++ .+.+..+..+.. +++|
T Consensus 65 l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~-l~~L 138 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINT-LPKV 138 (197)
T ss_dssp CTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHTT-CSSC
T ss_pred CCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHhh-CCCC
Confidence 555666666554 222221 1235677888888877776656667777777888877774 455434444554 7777
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCC
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (473)
++|+++++..+++.. .+..+++|+.|+++++.. .+ . ..+..+++|+.|+++++.++
T Consensus 139 ~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i-~~-~-~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGV-HD-Y-RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCC-CC-C-TTGGGCSSCCEEEECBC---
T ss_pred CEEEccCCCCccccH---hhcCCCCCCEEECCCCCC-cC-h-HHhccCCCCCEEEeeCcccC
Confidence 777777665333321 244456666666665532 21 1 14455566666666665543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=110.76 Aligned_cols=182 Identities=16% Similarity=0.157 Sum_probs=131.7
Q ss_pred cccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhh
Q 012001 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (473)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (473)
.....+++|+.|+++++. +... ..+.. +++|+.|+++++....... +..+++|+.|+++++.. .. ...+
T Consensus 40 ~~~~~l~~L~~L~l~~~~-i~~~--~~~~~-l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l-~~--~~~l 108 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKV-KD--LSSL 108 (291)
T ss_dssp ECHHHHHTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCC-CC--GGGG
T ss_pred cchhhcCcccEEEccCCC-cccC--hhHhc-CCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcC-CC--Chhh
Confidence 344568899999999854 4332 22444 8999999999887433222 66789999999998743 32 3348
Q ss_pred hCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012001 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (473)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (473)
..+++|+.|++++|.+.+. ..+. .+++|+.|+++++ .+++. ..+..+++|+.|++++|. +++... ...+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l 177 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 177 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh---hcCC
Confidence 8899999999999987763 2333 7899999999984 55542 346678999999999875 554322 4578
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhh
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 427 (473)
++|+.|++++|. +++. ..+ ..+++|+.|++++|.+++.+.....
T Consensus 178 ~~L~~L~L~~N~-i~~l--~~l-~~l~~L~~L~l~~n~i~~~~~~~~~ 221 (291)
T 1h6t_A 178 TKLQNLYLSKNH-ISDL--RAL-AGLKNLDVLELFSQECLNKPINHQS 221 (291)
T ss_dssp TTCCEEECCSSC-CCBC--GGG-TTCTTCSEEEEEEEEEECCCEECCS
T ss_pred CccCEEECCCCc-CCCC--hhh-ccCCCCCEEECcCCcccCCcccccc
Confidence 999999999964 5542 233 3889999999999988876654443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-12 Score=121.94 Aligned_cols=170 Identities=18% Similarity=0.149 Sum_probs=109.1
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++|+.|+++++...... -+..+++|+.|+++++. +....+ +..+++|+.|++++|.+.+.. .+. .+++|
T Consensus 42 L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS--SLK-DLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT--TST-TCTTC
T ss_pred CCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh--hhc-cCCCC
Confidence 677888888876532221 14567888888888774 322222 677888888888888766422 232 67788
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
+.|++++| .+.+ + ..+..+++|+.|++++|. ++.. .....+++|+.|++++|. ++.... ...+++|+.
T Consensus 112 ~~L~Ls~N-~l~~--l-~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHN-GISD--I-NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQN 179 (605)
T ss_dssp CEEECTTS-CCCC--C-GGGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCE
T ss_pred CEEEecCC-CCCC--C-ccccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCchh---hccCCCCCE
Confidence 88888774 4443 1 124567788888887765 4432 223467788888887754 433211 236778888
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
|+|++|.+++. ..+..+++|+.|++++| .++.
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 88888777764 34667778888888877 5553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-12 Score=122.29 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=134.0
Q ss_pred cccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhh
Q 012001 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (473)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (473)
..+..+++|+.|.++++. +... ..+.. +++|+.|+++++....... +..+++|+.|+++++.. .. +..+
T Consensus 37 ~~~~~L~~L~~L~l~~n~-i~~l--~~l~~-l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l-~~--l~~l 105 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKI-KD--LSSL 105 (605)
T ss_dssp ECHHHHTTCCCCBCTTCC-CCCC--TTGGG-CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCC-CC--CTTS
T ss_pred cchhcCCCCCEEECcCCC-CCCC--hHHcc-CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCC-CC--Chhh
Confidence 345578899999999854 4332 23444 8999999999887433222 66789999999998843 22 2367
Q ss_pred hCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012001 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (473)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (473)
..+++|+.|++++|.+.+. ..+. .+++|+.|++++| .+++. ..+..+++|+.|++++|. ++.... ...+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l 174 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 174 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEEecCCCCCCC--cccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---hccC
Confidence 8899999999999988763 2333 7899999999985 55542 346678999999999886 543322 4678
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
++|+.|++++|. +++. ..+. .+++|+.|++++|.+++.....+..+
T Consensus 175 ~~L~~L~Ls~N~-i~~l--~~l~-~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDL--RALA-GLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp TTCCEEECCSSC-CCBC--GGGT-TCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred CCCCEEECcCCC-CCCC--hHHc-cCCCCCEEEccCCcCcCCcccccccE
Confidence 999999999965 5542 3333 88999999999998887765544433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-12 Score=117.97 Aligned_cols=222 Identities=15% Similarity=0.095 Sum_probs=123.7
Q ss_pred CcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCc--cchHHHHHHHhcCcccceeecccccc---CchhHHHhh
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFW---VSADLSKCL 299 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~l 299 (473)
+++|+++.+.. .+...+..++.. |++|+.+++..+.. +... .+..+.++..+....... ........+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~-~~~L~~l~l~~n~i~~i~~~----aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKG-CDNLKICQIRKKTAPNLLPE----ALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTT-CTTCCEEEBCCSSCCEECTT----SSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cCCCcEEECCc--cccchhHHHhhc-CcccceEEcCCCCccccchh----hhcCCCceEEecCcchhhhhcccccccccc
Confidence 67777777765 333333233444 77788887776542 2121 123344555554433100 000011123
Q ss_pred hCCCCCC-eeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012001 300 HNFPMLQ-SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (473)
Q Consensus 300 ~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (473)
..+..|+ .+.+..................+++.+.+.+ .+....+..+...|++|++++++++. ++..+..++ ..
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF-~~ 248 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF-AQ 248 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT-TT
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh-hC
Confidence 3445555 4444432211111111111245677777765 35556666666668899999988643 333222222 46
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHHhcCccCC-eeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCcc
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (473)
|++|+.+++... ++.-+-..+. +|++|+ .+++.+ .++..+..++..|++|+.|++.++ +++..+-..+. +|++
T Consensus 249 ~~~L~~l~l~~n--i~~I~~~aF~-~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~-~~~~ 322 (329)
T 3sb4_A 249 KKYLLKIKLPHN--LKTIGQRVFS-NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFG-NGVP 322 (329)
T ss_dssp CTTCCEEECCTT--CCEECTTTTT-TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTC-TTCC
T ss_pred CCCCCEEECCcc--cceehHHHhh-CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhc-CCcc
Confidence 888999988762 4332222233 888898 999987 666666677888999999999887 77754444444 7888
Q ss_pred CCeeec
Q 012001 458 LKELDL 463 (473)
Q Consensus 458 L~~L~l 463 (473)
|+.|..
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 888753
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.1e-13 Score=113.61 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=122.1
Q ss_pred CCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCe
Q 012001 253 SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKE 332 (473)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 332 (473)
..+.+++++... +... ..-.++++.|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|+.
T Consensus 15 ~~~~l~~~~~~l-~~~p----~~~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSVP----SGIPADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGT 87 (251)
T ss_dssp GGTEEECTTCCC-SSCC----SCCCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCE
T ss_pred CCeEEecCCCCc-cccC----CCCCCCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCE
Confidence 456666665442 1110 0113579999999874 4444555678899999999999987765444343 6789999
Q ss_pred EecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeee
Q 012001 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (473)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (473)
|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++|+.|+++++. ++......+. .+++|+.|+
T Consensus 88 L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~ 161 (251)
T 3m19_A 88 LGLANN-QLASL-PLGVFDHLTQLDKLYLGGNQ-LKSLPS-GVFDRLTKLKELRLNTNQ-LQSIPAGAFD-KLTNLQTLS 161 (251)
T ss_dssp EECTTS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEE
T ss_pred EECCCC-ccccc-ChhHhcccCCCCEEEcCCCc-CCCcCh-hHhccCCcccEEECcCCc-CCccCHHHcC-cCcCCCEEE
Confidence 999984 55432 12235577899999999875 543221 112468899999999854 5432222232 788999999
Q ss_pred ecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+++|.++......+..+++|+.|++++| .++
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 192 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGN-QFD 192 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCC-cee
Confidence 9999988777667778999999999998 554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-12 Score=111.12 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=111.1
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
.+.++.|+++++...... ...+..+++|++|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD-HLTQL 109 (251)
T ss_dssp CTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred CCCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhc-ccCCC
Confidence 357999999987632221 1224568999999999873 4445556678899999999999987754433333 67899
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
++|+++++ .++.. ....+..+++|+.|+++++. ++..... ....+++|+.|+++++. ++......+ ..+++|+.
T Consensus 110 ~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 183 (251)
T 3m19_A 110 DKLYLGGN-QLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPAG-AFDKLTNLQTLSLSTNQ-LQSVPHGAF-DRLGKLQT 183 (251)
T ss_dssp CEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCE
T ss_pred CEEEcCCC-cCCCc-ChhHhccCCcccEEECcCCc-CCccCHH-HcCcCcCCCEEECCCCc-CCccCHHHH-hCCCCCCE
Confidence 99999984 55432 12234567999999999875 5432221 22467999999999854 543222223 37899999
Q ss_pred eeecccccChh
Q 012001 411 LDITENEVNDE 421 (473)
Q Consensus 411 L~l~~~~~~~~ 421 (473)
|++++|.++..
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 99999987654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=107.93 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=48.5
Q ss_pred CCCCcEEecCCCCc-------cchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHH
Q 012001 251 CKSLKALNLSKCQN-------ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323 (473)
Q Consensus 251 ~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 323 (473)
+++|+.|.+.+... .....+..++..+|+|+.|.++++.... +.. + ..++|+.|++..+.+++..+..+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 68899998865321 0011244566667778887776652211 111 1 25677777777777766666666
Q ss_pred Hh-hCCCCCeEecC
Q 012001 324 GN-WHGSLKELSLS 336 (473)
Q Consensus 324 ~~-~~~~L~~L~l~ 336 (473)
+. .+|+|++|+|.
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 53 46777777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-10 Score=89.79 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=90.3
Q ss_pred HHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEccCCCC
Q 012001 319 GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCKL 392 (473)
Q Consensus 319 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 392 (473)
.+..+....++|++|++++|..+.+.+...+.. ..++|++|++++|. +++.+...++. ..++|+.|++++|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 344444467888888888854777776655543 45788888888875 88777655543 45788888888854
Q ss_pred CCHHHHHHHHh---cCccCCeeee--cccccChhhhhhhh----cCCCCCeeecCCCCCcchHH
Q 012001 393 VSWEAFVLIGQ---QCQYLEELDI--TENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEG 447 (473)
Q Consensus 393 ~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~ 447 (473)
+++.+...++. ..+.|++|++ ++|.+++.+...++ ..++|++|++++| .+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 78877666654 4567888888 77888888766655 3578888888888 777655
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-12 Score=114.16 Aligned_cols=199 Identities=15% Similarity=0.105 Sum_probs=145.3
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++++++++.++. ++... ..-.++++.|+++++. +....+..+..+++|+.|+++++.+...... ..+++|
T Consensus 9 l~~l~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRN-LTALP----PDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp STTCCEEECTTSC-CSSCC----SCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred cCCccEEECCCCC-CCcCC----CCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 6889999998765 22211 0113689999999884 4545567788999999999999987753322 378999
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
+.|++++ +.++. ++..+..+++|+.|+++++. ++..... ....+++|+.|+++++. ++......+ ..+++|+.
T Consensus 80 ~~L~Ls~-N~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 152 (290)
T 1p9a_G 80 GTLDLSH-NQLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLG-ALRGLGELQELYLKGNE-LKTLPPGLL-TPTPKLEK 152 (290)
T ss_dssp CEEECCS-SCCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSS-TTTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCE
T ss_pred CEEECCC-CcCCc--CchhhccCCCCCEEECCCCc-CcccCHH-HHcCCCCCCEEECCCCC-CCccChhhc-ccccCCCE
Confidence 9999998 45542 33445678999999999875 4432211 22468999999999964 543222222 37899999
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
|++++|.++......+..+++|+.|++++| .++. ++......++|+.+++++++-
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCCCc
Confidence 999999999776666778999999999999 8873 444444678999999998763
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=103.96 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=36.0
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHHh--cCccCCeeeecccccChhhhhhhh----cCCCCCeeecCCCCCcchHHHHHHH
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIGQ--QCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
+|+|+.|.+.+|. +++.+...++. .+|+|++|+++.|.+++.+...+. .+++|+.|++++| .+++.++..+.
T Consensus 251 ~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~ 328 (362)
T 2ra8_A 251 FPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328 (362)
T ss_dssp CTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHH
T ss_pred CCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHH
Confidence 4555555555543 33333333331 345555555555555555444332 2455555555555 55555555544
Q ss_pred h
Q 012001 453 S 453 (473)
Q Consensus 453 ~ 453 (473)
+
T Consensus 329 ~ 329 (362)
T 2ra8_A 329 K 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-11 Score=95.80 Aligned_cols=85 Identities=24% Similarity=0.368 Sum_probs=45.8
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCCCCCeeecCCCCCcchHHH--HHHHhc
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNITDEGL--KHVGST 454 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~ 454 (473)
.+++|+.|++++|. ++.. +......+++|+.|++++|.+++.. +..+..+++|+.|++++| .++.... ......
T Consensus 62 ~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 62 KLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKL 138 (149)
T ss_dssp CCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHH
T ss_pred cCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHH
Confidence 34555555555533 3221 2223324666666666666666532 345556677777777776 5554322 123446
Q ss_pred CccCCeeecCC
Q 012001 455 CSMLKELDLYR 465 (473)
Q Consensus 455 ~~~L~~L~l~~ 465 (473)
+++|++|++++
T Consensus 139 l~~L~~L~l~d 149 (149)
T 2je0_A 139 LPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEETTBC
T ss_pred CCCcccccCCC
Confidence 67777776653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-11 Score=99.09 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=68.6
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCS 430 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~ 430 (473)
.+++|+.|++++|. ++.. .....+++|+.|++++|. ++.. +......+++|+.|++++|.+++.. +..+..++
T Consensus 47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 34555555555543 3322 112346677777777654 3322 2233335788888888888777743 35667788
Q ss_pred CCCeeecCCCCCcchHHH--HHHHhcCccCCeeecCCCCCc
Q 012001 431 KLSSLKLGICSNITDEGL--KHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~c~~l 469 (473)
+|+.|++++| .++.... ......+++|++|++++|..-
T Consensus 121 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 121 CLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888888 6664322 135557888888888887653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-12 Score=113.47 Aligned_cols=292 Identities=13% Similarity=0.061 Sum_probs=168.3
Q ss_pred CCCCcEEEcCCCCcccHHHHHHHHc-CCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhh--
Q 012001 124 CRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALK-- 200 (473)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-- 200 (473)
.+++++|.+++. +.......+.. +++|+.|+|+++. +...... ...++.++.+..... .+.... ...
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~--~~~~~~~~~~~~~~~-~I~~~a----F~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGK--AGTYPNGKFYIYMAN-FVPAYA----FSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEES--SSSSGGGCCEEECTT-EECTTT----TEEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcce-eEEecCc--ccccccccccccccc-ccCHHH----hcccc
Confidence 457899999875 55555566766 8999999998865 2200000 000222222222221 122211 125
Q ss_pred ------CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCcc-chHHH-HH
Q 012001 201 ------CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-SHVGL-SS 272 (473)
Q Consensus 201 ------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~~-~~ 272 (473)
|++|+.+.+.. .+....-.++..+++|+.+.+..+. +......++.. +.++..+........ ....+ ..
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcC-CCceEEecCcchhhhhcccccccc
Confidence 78888888887 5655555567778888888887632 22222222333 555665554431100 00000 00
Q ss_pred HHhcCcccc-eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH
Q 012001 273 LIKGADYLQ-QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (473)
Q Consensus 273 ~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 351 (473)
.+..+..|+ .+.+.....+.......-....+++.+.+.+. +.......+...+++|+.|++.++ .++..+ ...+.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~ 247 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFA 247 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-Hhhhh
Confidence 012344555 44444333332222222224557777777764 455566666656899999999873 343221 22366
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC-EEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (473)
.|++|+++++.++ ++..+-.++ ..|++|+ .+.+.. .++.-+-..+. +|++|+.+++.++.++..+..++..|+
T Consensus 248 ~~~~L~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFM-GCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTT-TCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred CCCCCCEEECCcc--cceehHHHh-hCChhccEEEEEcc--cceEEchhhhh-CCccCCEEEeCCCccCccchhhhcCCc
Confidence 8899999999764 433222222 4689999 999975 34332222333 899999999999999888888899999
Q ss_pred CCCeeec
Q 012001 431 KLSSLKL 437 (473)
Q Consensus 431 ~L~~L~l 437 (473)
+|+.|..
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 9999864
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=86.74 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=84.9
Q ss_pred hHHHhhhCCCCCCeeEecCC-cCChhHHHHHHh---hCCCCCeEecCCCCCCChHHHHHH---HHhCCCCcEEecCCCCC
Q 012001 294 DLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRK 366 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 366 (473)
.+...+...++|+.|++++| .+++.+...++. ..++|++|++++ +.+.+.+...+ +...++|++|++++|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 44556667778888888887 777777666653 356788888887 46776664443 3445778888887765
Q ss_pred CCHHHHHHHHh---cCCCCCEEEc--cCCCCCCHHHHHHHHh---cCccCCeeeecccccChhh
Q 012001 367 ITYASINSITK---TCTSLTSLRM--ECCKLVSWEAFVLIGQ---QCQYLEELDITENEVNDEG 422 (473)
Q Consensus 367 ~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~ 422 (473)
+++.+...++. ..++|+.|++ ++ +.+++.+...+.. ..+.|++|++++|.+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 77777666654 3467888888 44 4477766544432 4577888888887777665
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-11 Score=104.71 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=98.6
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
..+++|+.|+++++. +.. +. .+..+++|+.|++++|.+.+... +. .+++|+.|+++++ .+++ ++.. .. +
T Consensus 38 ~~l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~-~l~~L~~L~L~~N-~l~~--l~~~-~~-~ 106 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQS-LA-GMQFFTNLKELHLSHNQISDLSP--LK-DLTKLEELSVNRN-RLKN--LNGI-PS-A 106 (263)
T ss_dssp HHHTTCSEEECTTSC-CCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GT-TCSSCCEEECCSS-CCSC--CTTC-CC-S
T ss_pred hhcCcCcEEECcCCC-ccc-ch-HHhhCCCCCEEECCCCccCCChh--hc-cCCCCCEEECCCC-ccCC--cCcc-cc-C
Confidence 346788888888774 322 22 56778888888888888765443 33 7788888888874 4443 1111 12 7
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCe
Q 012001 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (473)
+|+.|++++|. +++. .. ...+++|+.|+++++. +++. ..+. .+++|+.|++++|.+++. ..+..+++|+.
T Consensus 107 ~L~~L~L~~N~-l~~~--~~-l~~l~~L~~L~Ls~N~-i~~~--~~l~-~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNNE-LRDT--DS-LIHLKNLEILSIRNNK-LKSI--VMLG-FLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSSC-CSBS--GG-GTTCTTCCEEECTTSC-CCBC--GGGG-GCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cccEEEccCCc-cCCC--hh-hcCcccccEEECCCCc-CCCC--hHHc-cCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 78888888765 4432 22 3467888888888754 5443 2232 678888888888877765 45667788888
Q ss_pred eecCCCCCcch
Q 012001 435 LKLGICSNITD 445 (473)
Q Consensus 435 L~l~~~~~l~~ 445 (473)
|++++| .++.
T Consensus 177 L~l~~N-~~~~ 186 (263)
T 1xeu_A 177 IDLTGQ-KCVN 186 (263)
T ss_dssp EEEEEE-EEEC
T ss_pred EeCCCC-cccC
Confidence 888887 5553
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-11 Score=98.54 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=50.2
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHH-HHHHHHhcCccCCeeeecccccChhhh---hhhh
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGL---KSIS 427 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~ 427 (473)
.+++|++|++++|. ++.. +......+++|+.|++++|. +++. .+..+. .+++|+.|++++|.+++... ..+.
T Consensus 69 ~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 69 KLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp CCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred cCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 44556666665554 3221 22333346666666666653 4332 222232 67788888888887776654 3566
Q ss_pred cCCCCCeeecCCC
Q 012001 428 RCSKLSSLKLGIC 440 (473)
Q Consensus 428 ~~~~L~~L~l~~~ 440 (473)
.+++|+.|++++|
T Consensus 145 ~l~~L~~L~l~~n 157 (168)
T 2ell_A 145 LLPQLTYLDGYDR 157 (168)
T ss_dssp TCSSCCEETTEET
T ss_pred hCccCcEecCCCC
Confidence 7888888888877
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.8e-13 Score=120.42 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=24.2
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCC
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH 237 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 237 (473)
+++++|++++|.++......+.++++|++|+++++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 467888888877764333456677777777777643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-12 Score=120.97 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=106.1
Q ss_pred hHHHhhhCCCCCCeeE-ecCCcCC--------hhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 294 DLSKCLHNFPMLQSIK-FEDCPVA--------RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~-l~~~~~~--------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
..+..+..+++|+.|+ +..+.+. ...+..+ ....|+.|+++++ .++. ++. +..+++|+.|+++++
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS
T ss_pred CCHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc
Confidence 3445555666666666 3333211 1122222 2347889999884 5553 344 667889999999987
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCCCCCeeecCCCCCc
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNI 443 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l 443 (473)
. ++ .++.....+++|+.|+++++. ++. ++.+. .+++|+.|++++|.++... +..++.+++|+.|++++| .+
T Consensus 474 ~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l 545 (567)
T 1dce_A 474 R-LR--ALPPALAALRCLEVLQASDNA-LEN--VDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SL 545 (567)
T ss_dssp C-CC--CCCGGGGGCTTCCEEECCSSC-CCC--CGGGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GG
T ss_pred c-cc--ccchhhhcCCCCCEEECCCCC-CCC--CcccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cC
Confidence 5 55 233334578999999999854 554 33333 8999999999999998875 678889999999999999 77
Q ss_pred chH--HHHHHHhcCccCCeeec
Q 012001 444 TDE--GLKHVGSTCSMLKELDL 463 (473)
Q Consensus 444 ~~~--~~~~~~~~~~~L~~L~l 463 (473)
+.. ....+...+|+|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 643 23345557899999864
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=71.56 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
....|..||+||+.+||+ |++ .+|+.+++.|||+|++++..
T Consensus 5 ~~~~~~~LP~eil~~I~~-~L~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ----CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCCCHHHCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCC
Confidence 345799999999999999 997 99999999999999998763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.4e-10 Score=87.20 Aligned_cols=129 Identities=20% Similarity=0.137 Sum_probs=65.5
Q ss_pred CCCcEEeeccccCCC-CcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 202 QEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
++++.|+++++.+++ .....+..+++|+.|+++++ .+... ..+.. +++|+.|+++++..... +...+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~-l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPK-LNKLKKLELSDNRVSGG--LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCC-CTTCCEEECCSSCCCSC--THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhc-CCCCCEEECCCCcccch--HHHHhhhCCCC
Confidence 456666666665542 22233345666666666664 23322 22222 56666666665553221 22334445666
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHH--HHHHhhCCCCCeEecC
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI--KAIGNWHGSLKELSLS 336 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~ 336 (473)
++|+++++.......+..+..+++|+.|++++|.+.+... ......+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666532221233556666777777777766554322 1122255666666554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-10 Score=97.95 Aligned_cols=174 Identities=15% Similarity=0.114 Sum_probs=120.0
Q ss_pred CcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCC
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPM 304 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (473)
+.++..+.+..+ .+.+.. .+.. +++|+.|+++++.. .... .+..+++|+.|+++++. +....+ +..+++
T Consensus 18 l~~l~~l~l~~~-~i~~~~--~~~~-l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~ 86 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV--SQKE-LSGVQNFNGDNSNI-QSLA---GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTK 86 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE--CHHH-HTTCSEEECTTSCC-CCCT---TGGGCTTCCEEECCSSC-CCCCGG--GTTCSS
T ss_pred HHHHHHHHhcCC-Cccccc--chhh-cCcCcEEECcCCCc-ccch---HHhhCCCCCEEECCCCc-cCCChh--hccCCC
Confidence 344555555552 333222 2344 78999999998863 3222 25668999999999884 333222 889999
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
|+.|++++|.+.+.. .+. . ++|+.|+++++ .+++. . .+..+++|+.|+++++. +++.. ....+++|+.
T Consensus 87 L~~L~L~~N~l~~l~--~~~-~-~~L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~ 154 (263)
T 1xeu_A 87 LEELSVNRNRLKNLN--GIP-S-ACLSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEV 154 (263)
T ss_dssp CCEEECCSSCCSCCT--TCC-C-SSCCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCE
T ss_pred CCEEECCCCccCCcC--ccc-c-CcccEEEccCC-ccCCC--h-hhcCcccccEEECCCCc-CCCCh---HHccCCCCCE
Confidence 999999999876522 122 2 89999999984 56542 2 35678999999999876 55432 2357899999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhh
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKS 425 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (473)
|+++++. +++. ..+ ..+++|+.|++++|.++......
T Consensus 155 L~L~~N~-i~~~--~~l-~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 155 LDLHGNE-ITNT--GGL-TRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp EECTTSC-CCBC--TTS-TTCCCCCEEEEEEEEEECCCEEC
T ss_pred EECCCCc-Ccch--HHh-ccCCCCCEEeCCCCcccCCcccc
Confidence 9999965 5543 223 37899999999999887765443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-11 Score=100.09 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=42.0
Q ss_pred cccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
++|++|+++++. +.......+..+++|+.|+++++.+.......+. .+++|++|+++++ .++.. ....+..+++|+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCC-CTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcC-CCCCcCEEECCCC-cCCcc-CHhHhcCccCCC
Confidence 467777777663 3333334456667777777777665532222222 4566666666653 33211 011123445555
Q ss_pred EEecCCC
Q 012001 358 KLDITCC 364 (473)
Q Consensus 358 ~L~l~~~ 364 (473)
+|+++++
T Consensus 104 ~L~L~~N 110 (208)
T 2o6s_A 104 ELALNTN 110 (208)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 5555544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.6e-12 Score=113.52 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=91.9
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++++|.+.......+....++..+.+.++..+.......+......++.|+++++.. +... .-.....+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~--~~~f~~~~ 178 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIH--NSAFNGTQ 178 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEEC--TTSSTTEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCC--hhhccccc
Confidence 66888888888887764433344455566677776655554333222333234678888887652 2211 11123467
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|.+.++..+.......+..+++|+.|++++|.++.-.. ..+.+|++|.+.++..+.. ++. +..+++|+.+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~--lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKK--LPT-LEKLVALMEA 251 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCC--CCC-TTTCCSCCEE
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCc--CCC-chhCcChhhC
Confidence 88888876545554444567788899999999887664221 1356777887766555432 221 3456777777
Q ss_pred ecCC
Q 012001 360 DITC 363 (473)
Q Consensus 360 ~l~~ 363 (473)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 7754
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.4e-11 Score=106.74 Aligned_cols=156 Identities=18% Similarity=0.124 Sum_probs=100.7
Q ss_pred cccceeeccccccCchhHHHhhh-CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 278 DYLQQLILAYSFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+.++.|+++++. +.......+. .+++|+.|++++|.+.......+. .+++|+.|++++ +.++.. ....+..+++|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSS-NHLHTL-DEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCS-SCCCEE-CTTTTTTCTTC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCC-CcCCcC-CHHHhCCCcCC
Confidence 458889998873 4444444455 788999999999887754444443 678899999988 455432 12235567888
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHH--hcCccCCeeeecccccChhhhhhhhcCCC--C
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSK--L 432 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L 432 (473)
+.|+++++. ++...... ...+++|+.|+++++. ++......+. ..+++|+.|++++|.++......+..++. +
T Consensus 115 ~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred CEEECCCCc-ccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 888888765 44321111 2457888888888754 4432111110 25788888888888887766666666766 4
Q ss_pred CeeecCCC
Q 012001 433 SSLKLGIC 440 (473)
Q Consensus 433 ~~L~l~~~ 440 (473)
+.|++.+|
T Consensus 192 ~~l~l~~N 199 (361)
T 2xot_A 192 NGLYLHNN 199 (361)
T ss_dssp TTEECCSS
T ss_pred ceEEecCC
Confidence 77888887
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-10 Score=98.25 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=91.6
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
+.++.|+++++.+...........+++|+.|++++ +.++... ...+..+++|++|+++++. ++..... ....+++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIE-EGAFEGASGVNEILLTSNR-LENVQHK-MFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGG-GGTTCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHh-HhcCCcCC
Confidence 46789999999876543222223678999999988 4555321 2235577889999998775 4432222 22467889
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 108 ~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 166 (220)
T 2v70_A 108 KTLMLRSNR-ITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN-PFN 166 (220)
T ss_dssp CEEECTTSC-CCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC-CEE
T ss_pred CEEECCCCc-CCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc-CCc
Confidence 999998854 4432222222 6788999999988888876677778888999999888 443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.2e-11 Score=97.57 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=57.3
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhh-hhhhcC
Q 012001 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL-KSISRC 429 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~ 429 (473)
..+++|+.|++++|. ++. +......+++|+.|++++|. ++. +..+. .+++|+.|++++|.+++... ..+..+
T Consensus 67 ~~l~~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N~-l~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l 139 (198)
T 1ds9_A 67 SGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQ-IAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAAL 139 (198)
T ss_dssp HHHTTCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEEE-CCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTT
T ss_pred ccCCCCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCCc-CCc--CCccc-cCCCCCEEECCCCcCCchhHHHHHhcC
Confidence 344555555555543 221 11222334666777776643 433 22333 56777777777777766432 456667
Q ss_pred CCCCeeecCCCCCcchHH---------HHHHHhcCccCCeee
Q 012001 430 SKLSSLKLGICSNITDEG---------LKHVGSTCSMLKELD 462 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~---------~~~~~~~~~~L~~L~ 462 (473)
++|+.|++++| .++... .......+++|++|+
T Consensus 140 ~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 140 DKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77777777777 554321 112344677777776
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-10 Score=96.67 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=91.9
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
++++.|+++++.+.......+. .+++|+.|++++ +.++.. .+..+..+++|++|+++++. ++.... .....+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~-N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSN-NQISEL-APDAFQGLRSLNSLVLYGNK-ITELPK-SLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCS-SCCCEE-CTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCC-CcCCCc-CHHHhhCCcCCCEEECCCCc-CCccCH-hHccCCCCC
Confidence 5899999999987754433333 678999999998 455432 12345677899999998875 442221 122467889
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 107 ~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 107 QLLLLNANK-INCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCC-CCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 999998854 5433222233 7788999999998888877666778889999999888
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.8e-09 Score=99.28 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=20.9
Q ss_pred CCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchH
Q 012001 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (473)
|+.|++++|.++... ..+..+++|+.|++++| .++..
T Consensus 209 L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N-~l~~~ 245 (571)
T 3cvr_A 209 EIFFRCRENRITHIP-ENILSLDPTCTIILEDN-PLSSR 245 (571)
T ss_dssp CEEEECCSSCCCCCC-GGGGGSCTTEEEECCSS-SCCHH
T ss_pred ceEEecCCCcceecC-HHHhcCCCCCEEEeeCC-cCCCc
Confidence 466666666665432 33444666666666666 55543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-10 Score=110.84 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=105.5
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccC-----------HHHHHHHHhcCCcCceee-cccCCCCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLIT-----------DLGIGRIAACCRKLKLLC-LKWCIRVT 190 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------~~~~~~~~~~~~~L~~L~-l~~~~~~~ 190 (473)
.+++|+.|+++++ .++..+ ..++.+++|++|+++++..+. ..........+++|+.|+ +..+ .+.
T Consensus 347 ~~~~L~~L~Ls~n-~L~~Lp-~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred cCccceeccCChh-hHHhhH-HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 5778888888876 455443 678888888888886542100 001112222366777776 3321 111
Q ss_pred HH--------HHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCC
Q 012001 191 DL--------GVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (473)
Q Consensus 191 ~~--------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (473)
+. .+..+ ....|+.|++++|.++. ++.+..+++|+.|+++++ .+... +..+.. +++|+.|+++++
T Consensus 424 ~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~-l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKM--EYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHN-RLRAL-PPALAA-LRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSS-CCCCC-CGGGGG-CTTCCEEECCSS
T ss_pred hhhhhhhhccccccc--CccCceEEEecCCCCCC--CcCccccccCcEeecCcc-ccccc-chhhhc-CCCCCEEECCCC
Confidence 11 12222 12468899999988764 345778888888888884 34422 123444 778888888876
Q ss_pred CccchHHHHHHHhcCcccceeeccccccCchhH-HHhhhCCCCCCeeEecCCcCC
Q 012001 263 QNISHVGLSSLIKGADYLQQLILAYSFWVSADL-SKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 316 (473)
.... . + .+..+++|+.|+++++. +.... +..+..+++|+.|++++|.+.
T Consensus 497 ~l~~-l--p-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 497 ALEN-V--D-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCC-C--G-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCC-C--c-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 5322 1 1 24556777777777663 33222 556666777777777776654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.8e-10 Score=89.74 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=79.8
Q ss_pred hhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012001 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (473)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (473)
+.++++|+.|++++|.+..- ..+....++|+.|+++++ .+++. ..+..+++|+.|+++++. ++... ..+...
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHH
T ss_pred cCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccC-cchhhc
Confidence 34577889999998887642 233333458888888873 55532 234456777777777764 44221 112245
Q ss_pred CCCCCEEEccCCCCCCHHH-HHHHHhcCccCCeeeecccccChhhhh---hhhcCCCCCeeecCCCCCcc
Q 012001 379 CTSLTSLRMECCKLVSWEA-FVLIGQQCQYLEELDITENEVNDEGLK---SISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~l~ 444 (473)
+++|+.|+++++. +++.. +..+. .+++|+.|++++|.+++.... .+..+++|+.|++++| ...
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV-KLK 153 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC-CHH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC-CHH
Confidence 6777777777754 43311 22232 667777777777766544322 2556777777777776 444
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-10 Score=93.95 Aligned_cols=132 Identities=13% Similarity=0.064 Sum_probs=93.0
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
.++|+.|+++++.+.......+. .+++|++|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFD-ELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCChhhhc-ccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCc-CCccCH-hHhcCccC
Confidence 46899999999987754333333 6789999999984 55432 12234567899999999875 442221 12246889
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
|+.|+++++. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 102 L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 102 LKELALNTNQ-LQSLPDGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCc-CcccCHhHh-ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9999998854 543221112 37889999999999888776656778999999999998
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-10 Score=103.16 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=109.6
Q ss_pred CCCCcEEecCCCCccchHHHHHHHh-cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIK-GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (473)
.+.++.|+++++. ++.... ..+. .+++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS-DLQA 113 (361)
T ss_dssp CTTCSEEECCSSC-CCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTT
T ss_pred CCCCCEEECCCCC-CCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhC-CCcC
Confidence 3568999999876 332211 1123 68999999999873 4444456688999999999999987754333333 7899
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHH--HhcCCCCCEEEccCCCCCCHHHHHHHHhcCcc
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI--TKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (473)
|+.|++++ +.++.. ....+..+++|+.|+++++. ++......+ ...+++|+.|+++++. ++......+. .++.
T Consensus 114 L~~L~L~~-N~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~ 188 (361)
T 2xot_A 114 LEVLLLYN-NHIVVV-DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ-KLPA 188 (361)
T ss_dssp CCEEECCS-SCCCEE-CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHH-HSCH
T ss_pred CCEEECCC-CcccEE-CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhh-hccH
Confidence 99999998 455532 12335678999999999875 543222111 1358999999999854 6654444444 5666
Q ss_pred --CCeeeecccccCh
Q 012001 408 --LEELDITENEVND 420 (473)
Q Consensus 408 --L~~L~l~~~~~~~ 420 (473)
++.|++.+|.+..
T Consensus 189 ~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 189 WVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHTTEECCSSCEEC
T ss_pred hhcceEEecCCCccC
Confidence 5899999986653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.3e-10 Score=105.95 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=114.0
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCC
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (473)
.+|+.|+++++.. +.. +. .-.++|+.|+++++. +. .++ ..+++|+.|++++|.++.- +. +. .+|+
T Consensus 59 ~~L~~L~Ls~n~L-~~l--p~--~l~~~L~~L~Ls~N~-l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~---~~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSL--PD--NLPPQITVLEITQNA-LI-SLP---ELPASLEYLDACDNRLSTL-PE-LP---ASLK 123 (571)
T ss_dssp TTCSEEECCSSCC-SCC--CS--CCCTTCSEEECCSSC-CS-CCC---CCCTTCCEEECCSSCCSCC-CC-CC---TTCC
T ss_pred CCccEEEeCCCCC-Ccc--CH--hHcCCCCEEECcCCC-Cc-ccc---cccCCCCEEEccCCCCCCc-ch-hh---cCCC
Confidence 4677777776542 211 10 013567777777763 22 222 4467888888888876651 11 22 2888
Q ss_pred eEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCee
Q 012001 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEEL 411 (473)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 411 (473)
.|++++ +.++. ++. .+++|+.|+++++. ++.. . ..+++|+.|++++|. ++. ++.+ . ++|+.|
T Consensus 124 ~L~Ls~-N~l~~--lp~---~l~~L~~L~Ls~N~-l~~l--p---~~l~~L~~L~Ls~N~-L~~--lp~l--~-~~L~~L 185 (571)
T 3cvr_A 124 HLDVDN-NQLTM--LPE---LPALLEYINADNNQ-LTML--P---ELPTSLEVLSVRNNQ-LTF--LPEL--P-ESLEAL 185 (571)
T ss_dssp EEECCS-SCCSC--CCC---CCTTCCEEECCSSC-CSCC--C---CCCTTCCEEECCSSC-CSC--CCCC--C-TTCCEE
T ss_pred EEECCC-CcCCC--CCC---cCccccEEeCCCCc-cCcC--C---CcCCCcCEEECCCCC-CCC--cchh--h-CCCCEE
Confidence 888887 34543 222 56789999998775 4431 1 146899999999865 443 2222 2 899999
Q ss_pred eecccccChhhhhhhhcCCCC-------CeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 412 DITENEVNDEGLKSISRCSKL-------SSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 412 ~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
++++|.++.... +.. +| +.|++++| .++. ++.....+++|+.|++++|+-
T Consensus 186 ~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 186 DVSTNLLESLPA--VPV--RNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ECCSSCCSSCCC--CC----------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred ECcCCCCCchhh--HHH--hhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCCcC
Confidence 999998885432 332 66 99999999 8884 555444699999999999863
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-10 Score=89.06 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=59.6
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+++|+.|+++++. +. .++......++|+.|++++|.+.+. ..+. .+++|+.|++++ +.++.. ...++..+++|
T Consensus 18 ~~~L~~L~l~~n~-l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IP-VIENLGATLDQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNN-NRICRI-GEGLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTSC-CC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCS-SCCCEE-CSCHHHHCTTC
T ss_pred cCCceEEEeeCCC-Cc-hhHHhhhcCCCCCEEECCCCCCCcc--cccc-cCCCCCEEECCC-Cccccc-CcchhhcCCCC
Confidence 4456666665552 22 1111112223666666666655432 1222 455666666665 233321 01223455666
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHH--HHHHHhcCccCCeeeecccccCh
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA--FVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
++|+++++. +++.........+++|+.|+++++. ++... .......+++|+.|++++|...+
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 666666554 3322110112345666666666543 22110 01122255666666666554443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=9e-10 Score=93.15 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=47.6
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
.+++|+.|+++++. ++.... .....+++|+.|+++++. ++. +......+++|+.|++++|.++......+..+++
T Consensus 86 ~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQ-LTVLPS-AVFDRLVHLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp TCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCcCEEECCCCc-CCccCh-hHhCcchhhCeEeccCCc-ccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 34555555555443 321111 111245666666666633 331 1111136778888888888777665555667788
Q ss_pred CCeeecCCC
Q 012001 432 LSSLKLGIC 440 (473)
Q Consensus 432 L~~L~l~~~ 440 (473)
|+.|++++|
T Consensus 161 L~~L~l~~N 169 (229)
T 3e6j_A 161 LTHAYLFGN 169 (229)
T ss_dssp CCEEECTTS
T ss_pred CCEEEeeCC
Confidence 888888887
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-10 Score=94.15 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=87.3
Q ss_pred cccceeeccccccCchh-HHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 278 DYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+.++.|+++++. +... ....+..+++|+.|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSN-RLENV-QHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCCC-CGGGGTTCSSC
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCC-ccCcc-CHhHhcCCcCC
Confidence 457888888774 3322 223467888999999998887654443443 6788999999883 44432 12235677889
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
++|+++++. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.+..
T Consensus 108 ~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 108 KTLMLRSNR-ITCVGNDS-FIGLSSVRLLSLYDNQ-ITTVAPGAFD-TLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CEEECTTSC-CCCBCTTS-STTCTTCSEEECTTSC-CCCBCTTTTT-TCTTCCEEECCSCCEEC
T ss_pred CEEECCCCc-CCeECHhH-cCCCccCCEEECCCCc-CCEECHHHhc-CCCCCCEEEecCcCCcC
Confidence 999998775 44221111 2357889999998854 4432222222 67889999998886653
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-09 Score=88.80 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=17.0
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
++++.|+++++.+.......+..+++|+.|++++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN 65 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC
Confidence 3455555555554433333444455555555555
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.5e-10 Score=91.41 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=69.9
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+++|+.|++++|.+..-. .+. .+++|+.|+++++ .++. ++..+..+++|+.|++++|. ++.. .. ..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~-~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l--~~-~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLS-GMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ-IASL--SG-IE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHH-HHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEE-CCCH--HH-HH
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccc-cCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCc-CCcC--Cc-cc
Confidence 4555566666666665544321 222 4566666666653 2321 22334444667777777654 4432 22 23
Q ss_pred cCCCCCEEEccCCCCCCHH-HHHHHHhcCccCCeeeecccccChhhhh----------hhhcCCCCCeee
Q 012001 378 TCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGLK----------SISRCSKLSSLK 436 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~ 436 (473)
.+++|+.|+++++. ++.. .+..+. .+++|+.|++++|.+++.... .+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 46677777777744 4432 223333 677777777777766554321 245678888776
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.9e-09 Score=87.30 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCC
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (473)
++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~-l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDS-LTQLTVLDLGTNQ 99 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhccc-CCCcCEEECCCCc
Confidence 55666666666655444444555666666666653 232221111222 4555555555443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-10 Score=102.91 Aligned_cols=232 Identities=13% Similarity=0.125 Sum_probs=111.8
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.|++|+.+.+... +....-..+..+++|+.+.+... +....-.++.. ++.|+.+.+......... ......+
T Consensus 160 ~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~-~~~L~~i~~~~~~~~i~~----~~~~~~~ 231 (394)
T 4fs7_A 160 TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE-CILLENMEFPNSLYYLGD----FALSKTG 231 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT-CTTCCBCCCCTTCCEECT----TTTTTCC
T ss_pred ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhcc-ccccceeecCCCceEeeh----hhcccCC
Confidence 5667777776543 11122233445666666666431 22111112222 566666655433211110 1122355
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcC--ChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV--ARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
|+.+.+... ........+..+..++.+.+..+.. .... ...+..++.+.... ..+.+. .+..+.+|+
T Consensus 232 l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~----F~~~~~l~~~~~~~-~~i~~~----~F~~~~~L~ 300 (394)
T 4fs7_A 232 VKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSL----FYNCSGLKKVIYGS-VIVPEK----TFYGCSSLT 300 (394)
T ss_dssp CCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCT----TTTCTTCCEEEECS-SEECTT----TTTTCTTCC
T ss_pred CceEEECCC--ceecccccccccccceeEEcCCCcceeeccc----cccccccceeccCc-eeeccc----ccccccccc
Confidence 666655432 1111123345566677776655421 1111 11455666665544 222221 244567777
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.+.+... ++..+-.++ ..|.+|+.+++.. .++.-+-.++. +|.+|+.+.+..+ ++..+..++..|++|+.+.+
T Consensus 301 ~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 301 EVKLLDS--VKFIGEEAF-ESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp EEEECTT--CCEECTTTT-TTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccc--cceechhhh-cCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 7777532 221111111 3577788887743 12222222222 7888888888665 55555566777888888888
Q ss_pred CCCCCcchHHHHHHHhcCccCCee
Q 012001 438 GICSNITDEGLKHVGSTCSMLKEL 461 (473)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~~~L~~L 461 (473)
..+ ++..+ .-...|++|+.+
T Consensus 374 p~~--~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKR--LEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp EGG--GGGGG--GGBCTTCEEEEE
T ss_pred CCC--CEEhh--heecCCCCCcEE
Confidence 653 33211 122356666554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-06 Score=68.74 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=77.7
Q ss_pred hHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHh---CCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEccCCC
Q 012001 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS---HKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCK 391 (473)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 391 (473)
+.+..+...-+.|++|++++++.+.+.+...+... ...|+.|++++|. +++.+..+++. .-+.|+.|+|+. +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 34444544567788888876446777765555443 3678888887765 77776655543 346788888877 4
Q ss_pred CCCHHHHHHHHhcC---ccCCeeeeccc---ccChhhhhhhh----cCCCCCeeecCCC
Q 012001 392 LVSWEAFVLIGQQC---QYLEELDITEN---EVNDEGLKSIS----RCSKLSSLKLGIC 440 (473)
Q Consensus 392 ~~~~~~~~~~~~~~---~~L~~L~l~~~---~~~~~~~~~l~----~~~~L~~L~l~~~ 440 (473)
.+++.+...+++.+ +.|++|+++++ .+++.+...++ .-+.|++|+++.+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 47777777666533 45777777653 56666544443 3567777777766
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-08 Score=82.53 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=76.3
Q ss_pred CCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCc
Q 012001 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQ 406 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 406 (473)
.++|++|++++ +.++. ++..+..+++|+.|+++++. ++......+ ..+++|+.|+++++. ++......+. .++
T Consensus 30 ~~~l~~L~L~~-n~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~f~-~l~ 102 (193)
T 2wfh_A 30 PRDVTELYLDG-NQFTL--VPKELSNYKHLTLIDLSNNR-ISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPRTFD-GLK 102 (193)
T ss_dssp CTTCCEEECCS-SCCCS--CCGGGGGCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTT-TCT
T ss_pred CCCCCEEECCC-CcCch--hHHHhhcccCCCEEECCCCc-CCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHHHhC-CCC
Confidence 36899999998 45553 33456778999999998875 443222222 467899999998854 5433222233 788
Q ss_pred cCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|+.|++++|.++......+..+++|+.|++++|
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 9999999999888766666778889999999988
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.3e-09 Score=84.53 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=86.8
Q ss_pred CeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 012001 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (473)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (473)
+.++++++.+..- +.. ..++|++|++++ +.++.......+..+++|++|+++++. ++..... ....+++|+.|
T Consensus 11 ~~l~~s~~~l~~i-p~~---~~~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRD---IPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN-AFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSC-CSC---CCTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEE
T ss_pred CEEEcCCCCcCcC-ccC---CCCCCCEEECCC-CcCCccCCccccccCCCCCEEECCCCC-CCCcCHh-HcCCcccCCEE
Confidence 5666666654321 111 234899999998 455432111235678999999999875 4432212 22468999999
Q ss_pred EccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 84 ~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred ECCCCc-CCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 999854 5543222222 7899999999999998877777888999999999999 554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.8e-09 Score=85.46 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=85.4
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
+.++++++. +. .++..+ .++++.|+++++.+...........+++|++|++++ +.++.. .+..+..+++|++|+
T Consensus 11 ~~l~~s~~~-l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRG-LK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSC-CS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEE
T ss_pred CEEEcCCCC-cC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCc-CHhHcCCcccCCEEE
Confidence 567776652 21 222222 238999999999876544332223789999999998 455532 133456789999999
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
++++. ++......+ ..+++|+.|+++++. ++......+. .+++|+.|++++|.++..
T Consensus 85 Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 85 LGENK-IKEISNKMF-LGLHQLKTLNLYDNQ-ISCVMPGSFE-HLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSCC-CCEECSSSS-TTCTTCCEEECCSSC-CCEECTTSST-TCTTCCEEECTTCCBCCS
T ss_pred CCCCc-CCccCHHHh-cCCCCCCEEECCCCc-CCeeCHHHhh-cCCCCCEEEeCCCCccCc
Confidence 99875 543322112 457999999999854 5533222222 789999999999977643
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-06 Score=68.06 Aligned_cols=125 Identities=11% Similarity=0.212 Sum_probs=78.8
Q ss_pred hHHHhhhCCCCCCeeEecCC-cCChhHHHHHHhh---CCCCCeEecCCCCCCChHHHHH---HHHhCCCCcEEecCCCCC
Q 012001 294 DLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSF---VVQSHKELRKLDITCCRK 366 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 366 (473)
.+...+.+-+.|+.|+++++ .+.+.+...++.. -..|+.|+|++ +.+.+.+... .++..+.|++|+++++.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 34445556677888888775 7777776666642 35678888877 4666665333 34445778888887765
Q ss_pred CCHHHHHHHHhcC---CCCCEEEccCCC--CCCHHHHHHHH---hcCccCCeeeecccccCh
Q 012001 367 ITYASINSITKTC---TSLTSLRMECCK--LVSWEAFVLIG---QQCQYLEELDITENEVND 420 (473)
Q Consensus 367 ~~~~~~~~~~~~~---~~L~~L~l~~~~--~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 420 (473)
+++.+...++..+ ..|+.|+++++. .+.+.+...++ ..-+.|+.|+++.+.+..
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 7777777666543 568888887542 45655433332 345677777777665443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.1e-08 Score=79.31 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=84.8
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
.+.+++.++.+..... ...++|++|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++|+.
T Consensus 9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT----GIPSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT----TCCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC----CCCCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCc-ceEeCh-hHccCCCccCE
Confidence 3455565555433211 13478999999984 45421 12234567899999999875 543221 11246889999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
|+++++. ++......+ ..+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 81 L~l~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 81 LYLHENK-LQSLPNGVF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp EECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred EECCCCC-ccccCHHHh-hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Cee
Confidence 9999854 543222222 27889999999999888766555677899999999999 554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.5e-08 Score=78.41 Aligned_cols=109 Identities=14% Similarity=0.094 Sum_probs=70.8
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
++|+.|+++++.+..-. ..+. .+++|+.|++++ +.++.. ....+..+++|++|+++++. ++......+ ..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~-~l~~L~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f-~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELS-NYKHLTLIDLSN-NRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTF-DGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGG-GCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTC
T ss_pred CCCCEEECCCCcCchhH-HHhh-cccCCCEEECCC-CcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHh-CCCCCC
Confidence 57899999988876322 2333 678899999988 455432 12235577889999998875 443322222 467889
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccC
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (473)
+.|+++++. ++......+ ..+++|+.|++++|.+.
T Consensus 105 ~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 105 RLLSLHGND-ISVVPEGAF-NDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSC-CCBCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred CEEECCCCC-CCeeChhhh-hcCccccEEEeCCCCee
Confidence 999998854 543222122 26788999999888654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9.2e-09 Score=94.37 Aligned_cols=78 Identities=8% Similarity=0.052 Sum_probs=34.3
Q ss_pred CCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCccc
Q 012001 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL 228 (473)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 228 (473)
+..++.+.+.. .++..+-.++.. + +|+.+.+... +...+-..+. . .+|+.+.+.. .+......++..+++|
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~-~-~L~~i~l~~~--i~~I~~~aF~-~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRN-S-QIAKVVLNEG--LKSIGDMAFF-N-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTT-C-CCSEEECCTT--CCEECTTTTT-T-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECC--ccCEehHhhccc-C-CccEEEeCCC--ccEECHHhcC-C-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 35566666654 223322223332 3 5666666532 2222222221 2 2466666654 2322233344455666
Q ss_pred CeeeccC
Q 012001 229 EDLVLEG 235 (473)
Q Consensus 229 ~~L~l~~ 235 (473)
+.+.+..
T Consensus 183 ~~l~l~~ 189 (401)
T 4fdw_A 183 KKADLSK 189 (401)
T ss_dssp CEEECTT
T ss_pred CeeecCC
Confidence 6666554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-08 Score=94.39 Aligned_cols=303 Identities=18% Similarity=0.247 Sum_probs=162.9
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (473)
.|.+|+++.+... +......++..|.+|+.+++... +...+-.++. .|++|+.+.+... +...+...+ ..+.
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~-~c~~L~~i~~p~~--l~~i~~~aF-~~~~ 140 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFS-GCYALKSILLPLM--LKSIGVEAF-KGCD 140 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTT-TCTTCCCCCCCTT--CCEECTTTT-TTCC
T ss_pred CCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhc-ccccchhhcccCc--eeeecceee-eccc
Confidence 6788888888642 44433356777888888888642 2322222222 2677777666431 211111111 1333
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCC-ccchHHHHHHHhcCcccc
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ-NISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~ 281 (473)
. ....+.. ......-.++.++++|+.+.+... +....-..+.. +++|+.+.+...- .+.+. .+..+..|+
T Consensus 141 ~-~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~-c~~L~~i~l~~~~~~I~~~----~F~~~~~L~ 211 (394)
T 4fs7_A 141 F-KEITIPE-GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSG-CGKLKSIKLPRNLKIIRDY----CFAECILLE 211 (394)
T ss_dssp C-SEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CTTCCBCCCCTTCCEECTT----TTTTCTTCC
T ss_pred c-cccccCc-cccccchhhhcccCCCcEEecCCc--cceeccccccC-CCCceEEEcCCCceEeCch----hhccccccc
Confidence 2 2222221 111122345667788888887642 22111122333 7788888776432 11111 244567777
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCc--CChhHHHHHHhhCCCCCeEecCCCC-CCChHHHHHHHHhCCCCcE
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCS-GVTDEELSFVVQSHKELRK 358 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~ 358 (473)
.+.+....... ......+.+|+.+.+.... +.... ...+.+++.+.+.... .+.. ..+..++.++.
T Consensus 212 ~i~~~~~~~~i---~~~~~~~~~l~~i~ip~~~~~i~~~~----f~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~ 280 (394)
T 4fs7_A 212 NMEFPNSLYYL---GDFALSKTGVKNIIIPDSFTELGKSV----FYGCTDLESISIQNNKLRIGG----SLFYNCSGLKK 280 (394)
T ss_dssp BCCCCTTCCEE---CTTTTTTCCCCEEEECTTCCEECSST----TTTCSSCCEEEECCTTCEECS----CTTTTCTTCCE
T ss_pred eeecCCCceEe---ehhhcccCCCceEEECCCceeccccc----ccccccceeEEcCCCcceeec----cccccccccce
Confidence 77665432111 1122345677777776532 11111 1256778888776521 1111 12446677887
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecC
Q 012001 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (473)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (473)
+...... +.+. ....+.+|+.+.+.. .++.-+-.++. +|.+|+.+++.++ ++..+-.++..|.+|+.+.+.
T Consensus 281 ~~~~~~~-i~~~----~F~~~~~L~~i~l~~--~i~~I~~~aF~-~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 281 VIYGSVI-VPEK----TFYGCSSLTEVKLLD--SVKFIGEEAFE-SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp EEECSSE-ECTT----TTTTCTTCCEEEECT--TCCEECTTTTT-TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred eccCcee-eccc----ccccccccccccccc--ccceechhhhc-CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 7765432 2221 124688999998854 13222222222 8999999999754 666666778889999999997
Q ss_pred CCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 439 ICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 439 ~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
.+ ++..+-.++. +|++|+.+++..
T Consensus 352 ~~--l~~I~~~aF~-~C~~L~~i~lp~ 375 (394)
T 4fs7_A 352 LS--LRKIGANAFQ-GCINLKKVELPK 375 (394)
T ss_dssp TT--CCEECTTTBT-TCTTCCEEEEEG
T ss_pred cc--ccEehHHHhh-CCCCCCEEEECC
Confidence 64 5543333444 899999998754
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-08 Score=92.77 Aligned_cols=268 Identities=13% Similarity=0.159 Sum_probs=129.4
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (473)
.+..++.+.+... +......++..+ +|+.+.+... +...+-.++.. + +|+.+.+.. .+...+-.. ...|+
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~-~L~~i~lp~--~l~~I~~~a-F~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-S-TVQEIVFPS--TLEQLKEDI-FYYCY 180 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-C-CCCEEECCT--TCCEECSST-TTTCT
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-C-CceEEEeCC--CccEehHHH-hhCcc
Confidence 4566777776543 333333344444 5777777652 33333333333 3 577777754 222222111 23678
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCC-ccchHHHHHHHhcCcccc
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ-NISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~ 281 (473)
+|+.+++..+.++......+. +.+|+.+.+.. .+......++.. |++|+.+.+...- .+.... +.. .+|+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~-~~~L~~l~l~~~l~~I~~~a----F~~-~~L~ 251 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLK-TSQLKTIEIPENVSTIGQEA----FRE-SGIT 251 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTT-CTTCCCEECCTTCCEECTTT----TTT-CCCS
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhC-CCCCCEEecCCCccCccccc----ccc-CCcc
Confidence 888888877655433333333 56777777754 233322233443 7777777776421 111111 111 4566
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
.+.+... +.......+..|++|+.+.+.++..... .++. +.. ..+.+|++|+.+.+
T Consensus 252 ~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~----------~~~~--------I~~----~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 252 TVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDD----------PEAM--------IHP----YCLEGCPKLARFEI 307 (401)
T ss_dssp EEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCC----------TTCE--------ECT----TTTTTCTTCCEECC
T ss_pred EEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCC----------cccE--------ECH----HHhhCCccCCeEEe
Confidence 6666332 2222234455666666666655433200 0000 111 11345566666665
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC-CCCeeecCCC
Q 012001 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGIC 440 (473)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 440 (473)
... ++..+..++ ..|++|+.+.+.. .++.-+-..+. +| +|+.+.+.+|.........+..++ +++.|.+..+
T Consensus 308 ~~~--i~~I~~~aF-~~c~~L~~l~lp~--~l~~I~~~aF~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 308 PES--IRILGQGLL-GGNRKVTQLTIPA--NVTQINFSAFN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTT--CCEECTTTT-TTCCSCCEEEECT--TCCEECTTSSS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCc--eEEEhhhhh-cCCCCccEEEECc--cccEEcHHhCC-CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 421 221111111 3456666666633 12221112222 66 778888777655444334444553 6777777655
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.2e-08 Score=95.36 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=75.7
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (473)
.+++|+.|+++++ .+.. ++.-+..+++|++|+++++. ++ .+......+++|+.|+|+++. ++. +......+
T Consensus 222 ~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CSS--CCSSGGGG
T ss_pred cCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CCc--cChhhcCC
Confidence 6788999999884 3432 22223367889999998875 54 222223568899999998855 542 22222378
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchH
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (473)
++|+.|+|++|.++.. +..+..+++|+.|+|++| .++..
T Consensus 293 ~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGN-PLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTS-CCCSH
T ss_pred CCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCC-ccCCC
Confidence 8899999999888754 345778889999999998 77753
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-06 Score=70.82 Aligned_cols=110 Identities=17% Similarity=0.092 Sum_probs=47.6
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++...... ...+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDK-LTKLTILYLHENKLQSLP--NGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccC-CCccCEEECCCCCccccC--HHHhhCCcccC
Confidence 45666666665554333333445556666666553 232211111222 455555555544311100 01122344555
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCC
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (473)
.|+++++. +.......+..+++|+.|++++|++.
T Consensus 104 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 55555442 22222222344555555555555543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-07 Score=94.08 Aligned_cols=138 Identities=17% Similarity=0.076 Sum_probs=93.1
Q ss_pred HHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHH
Q 012001 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS 374 (473)
Q Consensus 295 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (473)
.+..+..+++|+.|++++|.+.. ....++ .+++|+.|+|+++ .++ .++..+..+++|+.|++++|. ++. ++.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-ISANIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-CCGGGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CSS--CCS
T ss_pred ChhhhccCCCCcEEECCCCCCCC-CChhhc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CCc--cCh
Confidence 35567788999999999998763 222333 7899999999984 565 245556788999999999876 552 233
Q ss_pred HHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC-CCCeeecCCCCCcc
Q 012001 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGICSNIT 444 (473)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~ 444 (473)
....+++|+.|++++|. ++. +......+++|+.|+|++|.++......+.... .+..+++++| .++
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N-~l~ 354 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN-RPE 354 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_pred hhcCCCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC-ccc
Confidence 33578999999999964 542 221133889999999999999987766655322 2223566666 444
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-06 Score=73.76 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=37.1
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhh-hhhhhhhhHHHHHhhh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARK-SFSLTCRNFYSIESRH 51 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~-~~~~vc~~w~~~~~~~ 51 (473)
...+..||+|++..||+ +|| .++++ ++++|||+|++++...
T Consensus 48 ~~~~~~LP~ell~~Il~-~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLA-ELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCCTTSSCHHHHHHHHH-TSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred ccChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 35789999999999999 998 99999 9999999999987643
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.09 E-value=9.3e-07 Score=70.55 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=69.6
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (473)
++|+.|+++++. ++..... ....+++|+.|+++++. ++......+ ..+++|+.|++++|.++......+..+++|+
T Consensus 30 ~~l~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~l~~~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLEPG-VFDRLTQLTRLDLDNNQ-LTVLPAGVF-DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-CCccChh-hhcCcccCCEEECCCCC-cCccChhhc-cCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 689999999875 4432221 22468999999999854 553222222 3789999999999999887766688899999
Q ss_pred eeecCCCCCcc-----hHHHHHHHhcCccCC
Q 012001 434 SLKLGICSNIT-----DEGLKHVGSTCSMLK 459 (473)
Q Consensus 434 ~L~l~~~~~l~-----~~~~~~~~~~~~~L~ 459 (473)
.|++++| .++ -..+..+.+..+.+.
T Consensus 106 ~L~L~~N-~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 106 HIWLLNN-PWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp EEECCSS-CBCTTBGGGHHHHHHHHHCGGGE
T ss_pred EEEeCCC-CCCCCchhHHHHHHHHHhCccee
Confidence 9999999 553 223444454444443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-06 Score=70.30 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=62.6
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (473)
++|+.|+++++. ++.... .....+++|+.|+++++. ++..... ....+++|+.|++++|.++......+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEP-GVFDHLVNLQQLYFNSNK-LTAIPTG-VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccCH-HHhcCCcCCCEEECCCCC-CCccChh-HhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 689999999875 443211 222468999999999854 5532211 223789999999999999877655677899999
Q ss_pred eeecCCCCCcc
Q 012001 434 SLKLGICSNIT 444 (473)
Q Consensus 434 ~L~l~~~~~l~ 444 (473)
.|++++| .+.
T Consensus 109 ~L~L~~N-~~~ 118 (174)
T 2r9u_A 109 HIYLYNN-PWD 118 (174)
T ss_dssp EEECCSS-CBC
T ss_pred EEEeCCC-Ccc
Confidence 9999999 554
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-06 Score=72.81 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=36.0
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
.++.||+||+.+||+ ||+ ++|+++++.|||+|+.++...
T Consensus 4 ~l~~LP~ei~l~Ils-fL~-p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 4 TLTRLPIDVQLYILS-FLS-PHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp HHHHSCHHHHHHHHH-TSC-HHHHHHHHTTCHHHHHHHTCH
T ss_pred hhHhCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhccc
Confidence 588999999999999 997 999999999999999987654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.7e-07 Score=82.33 Aligned_cols=308 Identities=15% Similarity=0.168 Sum_probs=162.3
Q ss_pred cC-CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccC--cccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHh
Q 012001 123 NC-RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC--KLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVAL 199 (473)
Q Consensus 123 ~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 199 (473)
.| ..|+++.+... ++.....++..|.+|+++.+... ..+...+-.++.. |.+|+.+.+... +...+... ..
T Consensus 61 ~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~-c~~L~~i~~~~~--~~~I~~~a-F~ 134 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF-CSELTDIPILDS--VTEIDSEA-FH 134 (394)
T ss_dssp TCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT-CTTCCBCGGGTT--CSEECTTT-TT
T ss_pred CCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchh-cccceeeccCCc--cceehhhh-hh
Confidence 45 46999999753 44444467888999999988653 1233333333333 788888877542 22222111 23
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCc-cchHHHHHHHhcCc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN-ISHVGLSSLIKGAD 278 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~ 278 (473)
.|.+|+.+.+... +....-..+..+..|+.+.+.. .+......++. ...|+.+.+..... +.. ..+..+.
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip~~~~~i~~----~af~~c~ 205 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIPAKVTRIGT----NAFSECF 205 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEECTTCCEECT----TTTTTCT
T ss_pred hhcccccccccce-eeeecccceecccccccccccc--eeeEecccccc--ccceeEEEECCccccccc----chhhhcc
Confidence 7888999988754 2222334455678888887764 22221111222 45788888764321 111 1134456
Q ss_pred ccceeeccccccCc--hhH----------HHhhhCCCCCCeeEecCCc--CChhHHHHHHhhCCCCCeEecCCCCCCChH
Q 012001 279 YLQQLILAYSFWVS--ADL----------SKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344 (473)
Q Consensus 279 ~L~~L~l~~~~~~~--~~~----------~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 344 (473)
.++........... ... .........+..+.+...- +.+. . ...|.+|+.+.+... +...
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~---a-F~~c~~L~~i~lp~~--~~~I 279 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETH---A-FDSCAYLASVKMPDS--VVSI 279 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTT---T-TTTCSSCCEEECCTT--CCEE
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccc---e-eeecccccEEecccc--ccee
Confidence 66665543221100 000 0000112233344433210 1111 1 126778888888642 1111
Q ss_pred HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC-CCCCCHHHHHHHHhcCccCCeeeecccccChhhh
Q 012001 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC-CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL 423 (473)
Q Consensus 345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 423 (473)
+ ...+..|+.|+.+.+... ++..+-.++ ..|.+|+.+.+.. ...+.+.. +. +|.+|+.+.+..+ ++..+-
T Consensus 280 ~-~~aF~~c~~L~~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~~v~~I~~~a---F~-~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 280 G-TGAFMNCPALQDIEFSSR--ITELPESVF-AGCISLKSIDIPEGITQILDDA---FA-GCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp C-TTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCTTCCEECTTT---TT-TCTTCCEEEECTT-CCBCCG
T ss_pred c-CcccccccccccccCCCc--ccccCceee-cCCCCcCEEEeCCcccEehHhH---hh-CCCCCCEEEECcc-cCEEhH
Confidence 1 122456788998888532 222211122 4688999999853 22233332 22 8899999999754 666666
Q ss_pred hhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 424 KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 424 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
.++..|++|+.+++.++ .. ....+ ..+.+|+.+.+..
T Consensus 351 ~aF~~C~~L~~i~~~~~-~~---~~~~~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGS-RS---QWNAI-STDSGLQNLPVAP 387 (394)
T ss_dssp GGGTTCTTCCEEEESSC-HH---HHHTC-BCCCCC-------
T ss_pred hHhhCCCCCCEEEECCc-ee---ehhhh-hccCCCCEEEeCC
Confidence 77888999999999876 22 12222 3677888887753
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.94 E-value=7e-07 Score=82.19 Aligned_cols=308 Identities=16% Similarity=0.225 Sum_probs=165.6
Q ss_pred CCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCC--CcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
..|+++.+... ++..+-.++. .|.+|+++.+..+ ..+......++..+.+|+.+.+... +...+-..+. .|.
T Consensus 64 ~~L~sI~iP~s--vt~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~-~c~ 137 (394)
T 4gt6_A 64 YVLTSVQIPDT--VTEIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH-HCE 137 (394)
T ss_dssp SCCCEEEECTT--CCEECTTTTT-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT-TCT
T ss_pred CcCEEEEECCC--eeEEhHHHhh-CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh-hhc
Confidence 45899998643 3332323333 8999999998643 1244433456778899998887652 3332222333 389
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcE
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (473)
+|+.+.+... +...+-. ....|..|+.+.+... +....-.++ ...+|+.+.+.. .+......++.. +..++.
T Consensus 138 ~L~~i~lp~~--~~~I~~~-~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~--~~~~i~~~af~~-c~~l~~ 209 (394)
T 4gt6_A 138 ELDTVTIPEG--VTSVADG-MFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPA--KVTRIGTNAFSE-CFALST 209 (394)
T ss_dssp TCCEEECCTT--CCEECTT-TTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECT--TCCEECTTTTTT-CTTCCE
T ss_pred ccccccccce--eeeeccc-ceecccccccccccce-eeEeccccc-cccceeEEEECC--cccccccchhhh-ccccce
Confidence 9999999642 2221111 1237899999998764 221222223 235688888764 122222222333 777877
Q ss_pred EecCCCCccchHHHH---------HH--HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCc--CChhHHHHH
Q 012001 257 LNLSKCQNISHVGLS---------SL--IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAI 323 (473)
Q Consensus 257 L~l~~~~~~~~~~~~---------~~--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l 323 (473)
............... .. ......+..+.+... +.......+..+.+|+.+.+.... +... .+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~---aF 284 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCAYLASVKMPDSVVSIGTG---AF 284 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCSSCCEEECCTTCCEECTT---TT
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecccccEEecccccceecCc---cc
Confidence 765533211100000 00 000112223332211 111223456778899999887643 2221 11
Q ss_pred HhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCCCEEEccC-CCCCCHHHHHHH
Q 012001 324 GNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC-RKITYASINSITKTCTSLTSLRMEC-CKLVSWEAFVLI 401 (473)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~ 401 (473)
..+++|+.+.+.. .++..+ ...+.+|.+|+.+.|... ..+.+. ++ ..|.+|+.+.+.. ...+.+..+.
T Consensus 285 -~~c~~L~~i~l~~--~i~~I~-~~aF~~c~~L~~i~lp~~v~~I~~~---aF-~~C~~L~~i~ip~sv~~I~~~aF~-- 354 (394)
T 4gt6_A 285 -MNCPALQDIEFSS--RITELP-ESVFAGCISLKSIDIPEGITQILDD---AF-AGCEQLERIAIPSSVTKIPESAFS-- 354 (394)
T ss_dssp -TTCTTCCEEECCT--TCCEEC-TTTTTTCTTCCEEECCTTCCEECTT---TT-TTCTTCCEEEECTTCCBCCGGGGT--
T ss_pred -ccccccccccCCC--cccccC-ceeecCCCCcCEEEeCCcccEehHh---Hh-hCCCCCCEEEECcccCEEhHhHhh--
Confidence 2678999999864 222211 123667899999999642 223322 22 4689999999953 2334443333
Q ss_pred HhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 402 GQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|++|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 355 --~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 355 --NCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp --TCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred --CCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 8999999999886432 245667888998888654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.7e-05 Score=65.40 Aligned_cols=85 Identities=24% Similarity=0.250 Sum_probs=58.6
Q ss_pred hcCCCCCEEEccCCCCCCH-HHHHHHHhcCccCCeeeecccccChh-hhhhhhcCCCCCeeecCCCCCcch------HHH
Q 012001 377 KTCTSLTSLRMECCKLVSW-EAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGICSNITD------EGL 448 (473)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~------~~~ 448 (473)
..+|+|+.|+++++. ++. .++......+++|+.|+|++|.+++. .+..+..+ +|++|++++| .+.. ...
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~N-pl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGN-SLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTS-TTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCC-cCccccCcchhHH
Confidence 457888888888744 443 33444444789999999999988875 23333334 8999999999 5653 233
Q ss_pred HHHHhcCccCCeeecC
Q 012001 449 KHVGSTCSMLKELDLY 464 (473)
Q Consensus 449 ~~~~~~~~~L~~L~l~ 464 (473)
..+...+|+|+.|+=.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 4566789999998643
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.81 E-value=6.1e-06 Score=65.75 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=68.1
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
.+.++++++.+..-. .. ..++|+.|++++ +.++.. .+..+..+++|++|+++++. ++.... .....+++|+.
T Consensus 11 ~~~l~~s~n~l~~ip-~~---~~~~l~~L~L~~-N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TG---IPTTTQVLYLYD-NQITKL-EPGVFDRLTQLTRLDLDNNQ-LTVLPA-GVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCC-SC---CCTTCSEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccC-cc---CCCCCcEEEcCC-CcCCcc-ChhhhcCcccCCEEECCCCC-cCccCh-hhccCCCCCCE
Confidence 456666666544311 11 237899999998 455432 13335678899999999875 553222 12246899999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
|+++++. ++......+ ..+++|+.|++++|.++..
T Consensus 83 L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQ-LKSIPRGAF-DNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCBCTT
T ss_pred EECCCCc-cCEeCHHHh-cCCCCCCEEEeCCCCCCCC
Confidence 9999854 543222222 2789999999999977644
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.7e-06 Score=65.78 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=67.6
Q ss_pred CeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 012001 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (473)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (473)
+.++++++.+..- +.. ..++|+.|++++ +.++.. .+..+..+++|+.|+++++. ++.... .....+++|+.|
T Consensus 15 ~~l~~~~n~l~~i-P~~---~~~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAG---IPTDKQRLWLNN-NQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPT-GVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSC-CSC---CCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEE
T ss_pred cEEEeCCCCCCcc-CCC---cCCCCcEEEeCC-CCcccc-CHHHhcCCcCCCEEECCCCC-CCccCh-hHhCCcchhhEE
Confidence 5666666654321 111 237899999998 455432 13345678999999999875 553221 122468999999
Q ss_pred EccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
+++++. ++......+ ..+++|+.|++++|.+...
T Consensus 87 ~L~~N~-l~~l~~~~~-~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNH-LKSIPRGAF-DNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSC-CCCCCTTTT-TTCTTCSEEECCSSCBCTT
T ss_pred ECCCCc-cceeCHHHh-ccccCCCEEEeCCCCcccc
Confidence 999854 543221112 3789999999999977643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=76.21 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=39.0
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 6 ~~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
.-..|++..||+||+.+||+ ||+ .++++++++|||+|++++..
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHT-TSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHcC
Confidence 34568899999999999999 997 99999999999999998765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.55 E-value=2.6e-05 Score=70.31 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=67.2
Q ss_pred EecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeee
Q 012001 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (473)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (473)
++.++.+.++. ++. +..+++|+.|+++++..++......+ ..+++|+.|+|+++ .++...-..+. ++++|+.|+
T Consensus 13 v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~ 86 (347)
T 2ifg_A 13 LRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLN 86 (347)
T ss_dssp EECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCEEE
T ss_pred EEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCC-ccceeCHHHhc-CCcCCCEEe
Confidence 44444224443 444 55677899999986333553322222 46899999999985 46543222233 789999999
Q ss_pred ecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
|++|.++......+..++ |+.|++.+| .++
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 999988876544444444 999999998 554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.47 E-value=6.8e-05 Score=70.21 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=38.7
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 6 ~~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
....++++.||+|++.+||+ ||+ .+|+.++++|||+|++++..
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~-~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred cccCChhHHCCHHHHHHHHH-hCC-HHHHHHHHHHhHHHHhhcCc
Confidence 34578999999999999999 997 99999999999999998753
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00049 Score=58.50 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=38.4
Q ss_pred hcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCC
Q 012001 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (473)
..+++|+.|+++++....-.++...+..+++|+.|+++++..........+..+ +|+.|++.+|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 347888888888776443333344455667777777776643222222223333 6677777766654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=4.7e-05 Score=71.11 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=38.3
Q ss_pred cCCCCcccCcHH----HHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 7 KNSNPFDFLSEE----IIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 7 ~~~~~~~~LP~e----il~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
-..|++..||+| |+.+||+ ||+ .+++.++++|||+|++++..
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhcC
Confidence 457899999999 9999999 997 99999999999999998754
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.35 E-value=5.5e-05 Score=68.23 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=66.1
Q ss_pred CeeEecCC-cCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 306 QSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 306 ~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
..++.++. .+.. .+. +. .+++|+.|+|++++.++.. ....+..+++|+.|+++++. ++..... ....+++|+.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~-~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~-~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LP-GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPD-AFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SC-SCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTT-GGGSCSCCCE
T ss_pred CEEEcCCCCCCCc-cCC-CC-CCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHH-HhcCCcCCCE
Confidence 34566665 5543 222 33 6678999999864566532 12335678999999999875 5543222 2257899999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
|+|+++. ++..... ....++ |+.|++.+|.+..
T Consensus 85 L~l~~N~-l~~~~~~-~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNA-LESLSWK-TVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSC-CSCCCST-TTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCCc-cceeCHH-HcccCC-ceEEEeeCCCccC
Confidence 9999854 5432111 121333 9999999987663
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.17 E-value=9.2e-06 Score=74.35 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=69.1
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+.+|+.+.+...- ...+...+ ..+.+|+.+.+... ++..+ ...+..+.+|+.+.+... +...+..++ .
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f-~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~--i~~i~~~aF-~ 283 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAF-YGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAK--VKTVPYLLC-S 283 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTT-TTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCC--CSEECTTTT-T
T ss_pred ccccccccceeeeccce-eEEccccc-cCCccceEEEcCCC--ccEeC-ccccceeehhcccccccc--ceecccccc-c
Confidence 34456677777765431 11111111 15677888877542 22111 112456677888877532 222111111 3
Q ss_pred cCCCCCEEEccCC--CCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 378 TCTSLTSLRMECC--KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 378 ~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
.|++|+.+.+... ..+.+..+ . +|.+|+.+.+..+ ++..+-.++..|++|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF---~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVF---M-DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTT---T-TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccceehhhhh---c-CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5778888887642 12222222 2 7788888888653 5555555677788888887754
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.14 E-value=9.9e-06 Score=74.13 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=78.4
Q ss_pred cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
.+.+|+.+.+... +.......+..+.+|+.+.+..+ +..-+-.. ...+.+|+.+.+.. .+...+ ...+..|++
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a-F~~~~~l~~i~l~~--~i~~i~-~~aF~~c~~ 287 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL-LQNCTALKTLNFYA--KVKTVP-YLLCSGCSN 287 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTT-TTTCTTCCEEEECC--CCSEEC-TTTTTTCTT
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccc-cceeehhccccccc--cceecc-ccccccccc
Confidence 3556666666432 22222344566778888887654 11111111 12567888888754 222111 123567889
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC-CCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCC
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMEC-CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (473)
|+.+.+.++. ++..+-.++ ..|.+|+.+.+.. ...+.+.. +. +|.+|+.+.+..+ ++..+-.++..|+.+
T Consensus 288 L~~i~l~~~~-i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a---F~-~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPRVF-MDCVKLSSVTLPTALKTIQVYA---FK-NCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCEEEECCTT-CCEECTTTT-TTCTTCCEEECCTTCCEECTTT---TT-TCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccc-cceehhhhh-cCCCCCCEEEcCccccEEHHHH---hh-CCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 9999886532 221111122 4688999999853 22333333 22 8999999999764 555454556656433
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.2 Score=37.16 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=21.7
Q ss_pred cCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|+.|+|++|.++......+..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5666666666666655555556666666666666
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 473 | ||||
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-04 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 7e-06
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKL--VSWEAFVLIGQQCQYLEELD 412
+++ LDI C +++ A + +R++ C L + + L EL+
Sbjct: 3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 413 ITENEVNDEGLKSISRCSKLSSLKL 437
+ NE+ D G+ + + + S K+
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKI 86
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 4e-05
Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 203 EIRTLDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDG---LASVEYSCKSLKALN 258
+I++LD+ +++ ++ LQ + + L+ C G+ + ++S +L LN
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELN 61
Query: 259 LSKCQNISHVGLSSLIKGADY----LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC 313
L + + VG+ +++G +Q+L L A L +++
Sbjct: 62 LRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 1e-04
Identities = 48/407 (11%), Positives = 96/407 (23%), Gaps = 16/407 (3%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRL---FTKVGLSSLTVNCRFLTE 129
+ L C I S+ L +NL + L L L + +
Sbjct: 29 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 88
Query: 130 IDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRV 189
+ L N G + + L L G C L C +++
Sbjct: 89 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 148
Query: 190 TDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEY 249
+ + + + + + L
Sbjct: 149 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 208
Query: 250 SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309
S +L + + + S+ + I
Sbjct: 209 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 268
Query: 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITY 369
+ C ++A + + G + + + +C
Sbjct: 269 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 328
Query: 370 ASINS----ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKS 425
S S + L E +GQ L L + + +V+D S
Sbjct: 329 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 388
Query: 426 I----SRCSKLSSLKLGICSNITDEGLKHVGST----CSMLKELDLY 464
+ L L L + + D G+ + + +L++L LY
Sbjct: 389 LAATLLANHSLRELDLS-NNCLGDAGILQLVESVRQPGCLLEQLVLY 434
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 5/192 (2%)
Query: 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS 339
+Q + L+ S + L L LQ++ E ++ + + + +L L+LS CS
Sbjct: 48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCS 106
Query: 340 GVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM--ECCKLVSWEA 397
G ++ L ++ S L +L+++ C T + + + K +
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166
Query: 398 FVLIGQQCQYLEELDITENE-VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456
+ ++C L LD++++ + ++ + + + L L L C +I E L +G
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IP 225
Query: 457 MLKELDLYRFVT 468
LK L ++ V
Sbjct: 226 TLKTLQVFGIVP 237
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 7e-04
Identities = 35/243 (14%), Positives = 76/243 (31%), Gaps = 13/243 (5%)
Query: 74 TQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLS 133
LDL+ ++ + +L + + R + + + +DLS
Sbjct: 3 QTLDLTGK--------NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 54
Query: 134 NGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLG 193
N +++ L+ L L + ++D + +A L L L C ++
Sbjct: 55 NSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNS-NLVRLNLSGCSGFSEFA 112
Query: 194 VELVALKCQEIRTLDLSYLPITEKCLPPV---VKLQYLEDLVLEGCHGIDDDGLASVEYS 250
++ + C + L+LS+ + V + + L L G S
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310
+ +YLQ L L+ + + + L P L++++
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232
Query: 311 EDC 313
Sbjct: 233 FGI 235
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.92 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.92 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.88 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.87 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.7 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.7 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.45 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.42 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.36 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.35 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.29 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.29 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.28 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.26 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.24 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.23 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.23 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.18 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.17 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.99 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.94 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.93 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.92 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.86 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.86 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.85 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.84 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.79 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.77 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.77 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.75 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.74 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.72 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.7 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.67 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.61 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.52 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.37 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.31 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.1 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.98 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.7 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.37 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4e-24 Score=185.77 Aligned_cols=203 Identities=18% Similarity=0.300 Sum_probs=161.4
Q ss_pred CCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCC-cCChhHHHHHHhhCCCCC
Q 012001 253 SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLK 331 (473)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~ 331 (473)
+|++|+++++. ++...+..++..+++|++|+++++ .+.+..+..+.++++|+.|++++| .+++.++..+...+++|+
T Consensus 47 ~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~ 124 (284)
T d2astb2 47 RVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124 (284)
T ss_dssp CCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCEEECCCCc-cCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence 45555554432 344444445555566666666555 344555566677788888888886 478888888888899999
Q ss_pred eEecCCCCCCChHHHHHHHHh-CCCCcEEecCCC-CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCC
Q 012001 332 ELSLSKCSGVTDEELSFVVQS-HKELRKLDITCC-RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (473)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (473)
+|++++|..+++.++...+.. +++|+.|++++| ..+++.++..++.++|+|++|++++|..+++.++..+. .+++|+
T Consensus 125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~ 203 (284)
T d2astb2 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQ 203 (284)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCC
T ss_pred ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCC
Confidence 999999999998887766555 479999999987 45888899999889999999999999999998888887 799999
Q ss_pred eeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCe
Q 012001 410 ELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (473)
Q Consensus 410 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 460 (473)
+|++++| .+++.++..++++|+|+.|++++| +++.++..+.+.+|+|+.
T Consensus 204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i 253 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI 253 (284)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE
T ss_pred EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCccccc
Confidence 9999996 899999989999999999999998 677788888888999874
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6e-24 Score=184.64 Aligned_cols=229 Identities=19% Similarity=0.288 Sum_probs=185.2
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
.+++++ ..+....+..+.. .....+.+..... .... . ......+|++|+++++......+...+..+++|++|+
T Consensus 4 ~lDLs~-~~l~~~~l~~l~~--~~~~~lrl~~~~~-~~~~-~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~ 77 (284)
T d2astb2 4 TLDLTG-KNLHPDVTGRLLS--QGVIAFRCPRSFM-DQPL-A-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 77 (284)
T ss_dssp EEECTT-CBCCHHHHHHHHH--TTCSEEECTTCEE-CSCC-C-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred EEECCC-CCCCchHHHHHHh--ccceEeecccccc-ccch-h-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence 566766 3455555555554 2344555543321 1100 0 0123468999999988544455667788999999999
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH-hcCCCCCEEEcc
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT-KTCTSLTSLRME 388 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~ 388 (473)
+.+|.+.+..+..++ .+++|++|++++|..+++.++..+...+++|++|++++|..+++..+.... ..+++|+.|+++
T Consensus 78 L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~ 156 (284)
T d2astb2 78 LEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 156 (284)
T ss_dssp CTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred ccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence 999999999998887 789999999999999999999999999999999999999999988876544 457899999999
Q ss_pred CC-CCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 389 CC-KLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 389 ~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
+| ..+++.++..+..+||+|++|++++| .+++.++..++++++|++|++++|..+++.++..+. .+|+|+.|++.+|
T Consensus 157 ~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~ 235 (284)
T d2astb2 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI 235 (284)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred ccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC
Confidence 87 46899999999889999999999997 799999999999999999999999899998887765 7999999999998
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-20 Score=176.43 Aligned_cols=385 Identities=20% Similarity=0.271 Sum_probs=211.1
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHH---hhcCCCCcEEEcCCCCcccHHHHHHHH
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL---TVNCRFLTEIDLSNGTEMGDAAAAAIA 147 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~ 147 (473)
++|+.|++++. .+++..+..+ ...+++++.|++.+|. ++...+..+ ...+++|++|+++++ .+++.....+.
T Consensus 2 ~~l~~ld~~~~-~i~~~~~~~l--~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~ 76 (460)
T d1z7xw1 2 LDIQSLDIQCE-ELSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVL 76 (460)
T ss_dssp EEEEEEEEESC-CCCHHHHHHH--HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred CCCCEEEeeCC-cCChHHHHHH--HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHH
Confidence 35788999654 5677666554 3556888999998885 666555444 357899999999987 57777666665
Q ss_pred c-----CCCCCEEecccCcccCHHHHHHHH---hcCCcCceeecccCCCCCHHHHHHHHhhC----CCCcEEeeccccCC
Q 012001 148 E-----AKNLERLWLARCKLITDLGIGRIA---ACCRKLKLLCLKWCIRVTDLGVELVALKC----QEIRTLDLSYLPIT 215 (473)
Q Consensus 148 ~-----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~ 215 (473)
. ..+|++|++.+|. +++.+...+. ..+++|++|+++++. +++.+...+.... ..............
T Consensus 77 ~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 154 (460)
T d1z7xw1 77 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 154 (460)
T ss_dssp HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccc
Confidence 4 2579999999875 6766655443 357889999998864 5555554443322 12223333222222
Q ss_pred CCcccc----cccCcccCeeeccCCCCCChHHHHH----HHhcCCCCcEEecCCCCccchH--HHHHHHhcCcccceeec
Q 012001 216 EKCLPP----VVKLQYLEDLVLEGCHGIDDDGLAS----VEYSCKSLKALNLSKCQNISHV--GLSSLIKGADYLQQLIL 285 (473)
Q Consensus 216 ~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l 285 (473)
...... +...+.++.+.++.+. ..+..... +.........+.+..+...... .........+.++.+.+
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~ls~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 233 (460)
T d1z7xw1 155 AASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 233 (460)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred hhhhcccccccccccccccccccccc-cccccccccccccccccccccccccccccccchhhhcccccccccccccccch
Confidence 111111 1234566666666532 22222221 1221234555655554422221 12233344566666666
Q ss_pred cccccCch----hHHHhhhCCCCCCeeEecCCcCChhHHHHHH---hhCCCCCeEecCCCCCCChHHHHHHHHh----CC
Q 012001 286 AYSFWVSA----DLSKCLHNFPMLQSIKFEDCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVVQS----HK 354 (473)
Q Consensus 286 ~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~ 354 (473)
.++..... ..........+++.+++++|.+......... ...+.++.+++++ +.+++.++..+... .+
T Consensus 234 ~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~-n~i~~~~~~~l~~~l~~~~~ 312 (460)
T d1z7xw1 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGC 312 (460)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTC
T ss_pred hhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccc-ccccccccchhhcccccccc
Confidence 55432211 1122223455666666666665554433222 1455666666665 35555554444322 24
Q ss_pred CCcEEecCCCCCCCHHHHHHH---HhcCCCCCEEEccCCCCCCHHHHHHHHh----cCccCCeeeecccccChhhhhhhh
Q 012001 355 ELRKLDITCCRKITYASINSI---TKTCTSLTSLRMECCKLVSWEAFVLIGQ----QCQYLEELDITENEVNDEGLKSIS 427 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~ 427 (473)
.|+.+.++++. +++.....+ ....++|++|+++++ .+++.++..+.. ..+.|++|++++|.+++.++..++
T Consensus 313 ~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 390 (460)
T d1z7xw1 313 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 390 (460)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccccccccccc-hhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence 56666666654 444433332 234566666666664 356555554432 344566666666666666554433
Q ss_pred ----cCCCCCeeecCCCCCcchHHHHHHHhc----CccCCeeecCCCC
Q 012001 428 ----RCSKLSSLKLGICSNITDEGLKHVGST----CSMLKELDLYRFV 467 (473)
Q Consensus 428 ----~~~~L~~L~l~~~~~l~~~~~~~~~~~----~~~L~~L~l~~c~ 467 (473)
.+++|++|++++| ++++.++..+.+. ..+|+.|++.++.
T Consensus 391 ~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~ 437 (460)
T d1z7xw1 391 ATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 437 (460)
T ss_dssp HHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence 3566666666666 6666666555432 2256666666543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.3e-19 Score=167.08 Aligned_cols=393 Identities=19% Similarity=0.204 Sum_probs=270.6
Q ss_pred hhHHHHhccCCCccEEecCCCCCCChhhHHhhh-ccccCCCccEEEcCCCccccHHHHHHHhhc----CCCCcEEEcCCC
Q 012001 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVS-SSSWKLTLRSINLSRSRLFTKVGLSSLTVN----CRFLTEIDLSNG 135 (473)
Q Consensus 61 ~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~ 135 (473)
..+...+..+++++.|++.+|. +++.....++ .....++|++|+++++. +++..+..+... ..+|++|+++++
T Consensus 17 ~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 94 (460)
T d1z7xw1 17 ARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC 94 (460)
T ss_dssp HHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred HHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCC
Confidence 3456677888999999999994 7777776663 24678899999999875 677776666643 357999999998
Q ss_pred CcccHHHHHH----HHcCCCCCEEecccCcccCHHHHHHHHhcC----CcCceeecccCCCC--CHHHHHHHHhhCCCCc
Q 012001 136 TEMGDAAAAA----IAEAKNLERLWLARCKLITDLGIGRIAACC----RKLKLLCLKWCIRV--TDLGVELVALKCQEIR 205 (473)
Q Consensus 136 ~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~ 205 (473)
.+++..... +..+++|++|++.++. +.+.++..+.... .............. ............+.++
T Consensus 95 -~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (460)
T d1z7xw1 95 -CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 172 (460)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred -Cccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccc
Confidence 576654433 4468999999999975 6666665554422 22333333322111 1223344445778999
Q ss_pred EEeeccccCCCCcccccc-----cCcccCeeeccCCCCCChHH--HHHHHhcCCCCcEEecCCCCccchH---HHHHHHh
Q 012001 206 TLDLSYLPITEKCLPPVV-----KLQYLEDLVLEGCHGIDDDG--LASVEYSCKSLKALNLSKCQNISHV---GLSSLIK 275 (473)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~ 275 (473)
.+.++.+...+.....+. .......+.+..+....... ........+.++.+.+.++...... .......
T Consensus 173 ~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~ 252 (460)
T d1z7xw1 173 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 252 (460)
T ss_dssp EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccc
Confidence 999988765544333322 23355667777654333221 2222223789999999887633221 2223334
Q ss_pred cCcccceeeccccccCch---hHHHhhhCCCCCCeeEecCCcCChhHHHHHHh----hCCCCCeEecCCCCCCChHH---
Q 012001 276 GADYLQQLILAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN----WHGSLKELSLSKCSGVTDEE--- 345 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~--- 345 (473)
..++++.++++++..... .....+...+.++.++++++.+++.+...+.. ....|+.+.++++ .+++.+
T Consensus 253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~ 331 (460)
T d1z7xw1 253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSH 331 (460)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc-chhhhhhhh
Confidence 567899999998754332 23345667899999999999999888877754 3458999999985 565544
Q ss_pred HHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh----cCCCCCEEEccCCCCCCHHHHHHHH---hcCccCCeeeeccccc
Q 012001 346 LSFVVQSHKELRKLDITCCRKITYASINSITK----TCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEV 418 (473)
Q Consensus 346 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 418 (473)
+..+...+++|++|+++++. +++.++..++. ..+.|+.|++++|. +++.++..+. ..+++|++|++++|.+
T Consensus 332 l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i 409 (460)
T d1z7xw1 332 FSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL 409 (460)
T ss_dssp HHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence 33445677899999999875 88877766653 45779999999985 8988776653 3679999999999999
Q ss_pred Chhhhhhhh-----cCCCCCeeecCCCCCcchHHHH---HHHhcCccCCee
Q 012001 419 NDEGLKSIS-----RCSKLSSLKLGICSNITDEGLK---HVGSTCSMLKEL 461 (473)
Q Consensus 419 ~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L 461 (473)
++.++..+. ...+|+.|.+.++ .+...... .+.+..|+|+.|
T Consensus 410 ~~~g~~~l~~~l~~~~~~L~~l~l~~~-~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 410 GDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp CHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CHHHHHHHHHHHHhCCCccCEEECCCC-CCCHHHHHHHHHHHHhCCCCEEe
Confidence 999888775 2447999999999 87765444 445678888876
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.9e-16 Score=144.28 Aligned_cols=188 Identities=17% Similarity=0.167 Sum_probs=132.6
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++++.+.++++....... ....++|++|+++++.. .. ...+..+++|+.+++.++.+.+... +. .+++|
T Consensus 196 l~~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~n~l-~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L 265 (384)
T d2omza2 196 LTNLESLIATNNQISDITP----LGILTNLDELSLNGNQL-KD--IGTLASLTNLTDLDLANNQISNLAP--LS-GLTKL 265 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTC
T ss_pred ccccceeeccCCccCCCCc----ccccCCCCEEECCCCCC-CC--cchhhcccccchhccccCccCCCCc--cc-ccccC
Confidence 7888888888765322211 34467888998887742 22 2356788899999999988765332 32 67899
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
++|+++++ .+.. +.. +..++.++.+.+..+. +++. .. ...+++++.|+++++. +++. ..+ ..+++|++
T Consensus 266 ~~L~l~~~-~l~~--~~~-~~~~~~l~~l~~~~n~-l~~~--~~-~~~~~~l~~L~ls~n~-l~~l--~~l-~~l~~L~~ 333 (384)
T d2omza2 266 TELKLGAN-QISN--ISP-LAGLTALTNLELNENQ-LEDI--SP-ISNLKNLTYLTLYFNN-ISDI--SPV-SSLTKLQR 333 (384)
T ss_dssp SEEECCSS-CCCC--CGG-GTTCTTCSEEECCSSC-CSCC--GG-GGGCTTCSEEECCSSC-CSCC--GGG-GGCTTCCE
T ss_pred CEeeccCc-ccCC--CCc-cccccccccccccccc-cccc--cc-cchhcccCeEECCCCC-CCCC--ccc-ccCCCCCE
Confidence 99999874 4432 111 4467888999988765 3321 11 2568999999999864 5542 223 38899999
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
|++++|.+++. ..++.+++|++|++++| ++++ +.. ..++++|++|+|+++
T Consensus 334 L~L~~n~l~~l--~~l~~l~~L~~L~l~~N-~l~~--l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 334 LFFANNKVSDV--SSLANLTNINWLSAGHN-QISD--LTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp EECCSSCCCCC--GGGGGCTTCCEEECCSS-CCCB--CGG-GTTCTTCSEEECCCE
T ss_pred EECCCCCCCCC--hhHcCCCCCCEEECCCC-cCCC--Chh-hccCCCCCEeeCCCC
Confidence 99999988874 35788999999999999 8874 333 458999999999875
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.70 E-value=2.9e-15 Score=133.71 Aligned_cols=241 Identities=17% Similarity=0.209 Sum_probs=149.6
Q ss_pred HhhCCCCcEEeeccccCCCCcccccc----cCcccCeeeccCCCC--CC---hHHHHHHHh---cCCCCcEEecCCCCcc
Q 012001 198 ALKCQEIRTLDLSYLPITEKCLPPVV----KLQYLEDLVLEGCHG--ID---DDGLASVEY---SCKSLKALNLSKCQNI 265 (473)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~--~~---~~~~~~l~~---~~~~L~~L~l~~~~~~ 265 (473)
......++.|+++++.+.+++...++ ..++|+.+.+.++.. .. ......+.. .+++|++|+++++. +
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i 105 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 105 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-c
Confidence 34678888999988877776655543 567888888876431 11 122222222 26788888888765 3
Q ss_pred chH---HHHHHHhcCcccceeeccccccCchhHHH-------------hhhCCCCCCeeEecCCcCChhHHHHHH---hh
Q 012001 266 SHV---GLSSLIKGADYLQQLILAYSFWVSADLSK-------------CLHNFPMLQSIKFEDCPVARSGIKAIG---NW 326 (473)
Q Consensus 266 ~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~l~~~~~L~~L~l~~~~~~~~~~~~l~---~~ 326 (473)
++. .+...+...++|++|+++++. +...... .....+.|+.+.+.++.+.+.+...+. ..
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~ 184 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred ccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence 333 344445567788888887764 2221111 113456777788777777766555443 24
Q ss_pred CCCCCeEecCCCCCCChHHHHHH----HHhCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCCCHHHHH
Q 012001 327 HGSLKELSLSKCSGVTDEELSFV----VQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSWEAFV 399 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~ 399 (473)
+++|+.|+++.| .+++.++..+ +..+++|+.|+++++. +++.+...++ ..+++|++|++++|. +++.+..
T Consensus 185 ~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~ 261 (344)
T d2ca6a1 185 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA 261 (344)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred hhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchhhH
Confidence 677788887773 5666554432 3345777777777664 6665544443 456777777777765 6776666
Q ss_pred HHHhc-----CccCCeeeecccccChhhhhhhh-----cCCCCCeeecCCCCCcc
Q 012001 400 LIGQQ-----CQYLEELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNIT 444 (473)
Q Consensus 400 ~~~~~-----~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~ 444 (473)
.++.. .+.|++|++++|.+++.++..+. ++++|+.|++++| .++
T Consensus 262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-~~~ 315 (344)
T d2ca6a1 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS 315 (344)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC-cCC
Confidence 55432 34577777777777777655544 3567777777777 553
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.70 E-value=1.4e-15 Score=135.85 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=51.5
Q ss_pred hhCCCCCCeeEecCCcCChhHHHHHH----hhCCCCCeEecCCCCCCChHHHHH---HHHhCCCCcEEecCCCCCCCHHH
Q 012001 299 LHNFPMLQSIKFEDCPVARSGIKAIG----NWHGSLKELSLSKCSGVTDEELSF---VVQSHKELRKLDITCCRKITYAS 371 (473)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~ 371 (473)
+..+++|+.|++.+|.+++.+...+. ..+++|+.|++++ +.+++.+... .+..+++|++|++++|. +++.+
T Consensus 182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g 259 (344)
T d2ca6a1 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARG 259 (344)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHH
T ss_pred hhhhhhhcccccccccccccccccchhhhhcchhhhccccccc-ccccccccccccccccccccchhhhhhcCc-cCchh
Confidence 33445555555555555444332211 1344555555554 2344333222 22334455555555543 44444
Q ss_pred HHHHHhc-----CCCCCEEEccCCCCCCHHHHHHHHh----cCccCCeeeecccccC
Q 012001 372 INSITKT-----CTSLTSLRMECCKLVSWEAFVLIGQ----QCQYLEELDITENEVN 419 (473)
Q Consensus 372 ~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~ 419 (473)
...++.. .+.|+.|+++++. +++.++..+.. .+++|+.|++++|.+.
T Consensus 260 ~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 260 AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 4443321 2345555555532 44444333322 3445555555555443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=2.2e-14 Score=130.35 Aligned_cols=323 Identities=20% Similarity=0.181 Sum_probs=197.1
Q ss_pred CCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC
Q 012001 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (473)
Q Consensus 70 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (473)
..++++|+++++. +.+ +. ....+++|++|+++++. ++.. .. ...+++|++|+++++. +.+. ..+..+
T Consensus 43 l~~l~~L~l~~~~-I~~--l~---gl~~L~nL~~L~Ls~N~-l~~l--~~-l~~L~~L~~L~L~~n~-i~~i--~~l~~l 109 (384)
T d2omza2 43 LDQVTTLQADRLG-IKS--ID---GVEYLNNLTQINFSNNQ-LTDI--TP-LKNLTKLVDILMNNNQ-IADI--TPLANL 109 (384)
T ss_dssp HTTCCEEECCSSC-CCC--CT---TGGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSC-CCCC--GGGTTC
T ss_pred hCCCCEEECCCCC-CCC--cc---ccccCCCCCEEeCcCCc-CCCC--cc-ccCCcccccccccccc-cccc--cccccc
Confidence 3578888888764 222 12 23456888888888874 3322 12 3378888888888874 4432 236778
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHH------------------HHHHHhhCCCCcEEeecc
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLG------------------VELVALKCQEIRTLDLSY 211 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------~~~~~~~~~~L~~L~l~~ 211 (473)
++|+.|++.++......... ....+.......+....... ... ..............
T Consensus 110 ~~L~~L~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (384)
T d2omza2 110 TNLTGLTLFNNQITDIDPLK----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISS 184 (384)
T ss_dssp TTCCEEECCSSCCCCCGGGT----TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCS
T ss_pred cccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccchhhh-hccccccccccccc
Confidence 88888888775432211111 12233333222110000000 000 00112222222222
Q ss_pred ccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccC
Q 012001 212 LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV 291 (473)
Q Consensus 212 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 291 (473)
+.. ........+++++.+.+.++. +.... .... +++|++|++.++...... .+..+++|+.|+++++. +
T Consensus 185 ~~~--~~~~~~~~l~~~~~l~l~~n~-i~~~~--~~~~-~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~-l 253 (384)
T d2omza2 185 NKV--SDISVLAKLTNLESLIATNNQ-ISDIT--PLGI-LTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ-I 253 (384)
T ss_dssp SCC--CCCGGGGGCTTCSEEECCSSC-CCCCG--GGGG-CTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSC-C
T ss_pred ccc--ccccccccccccceeeccCCc-cCCCC--cccc-cCCCCEEECCCCCCCCcc----hhhcccccchhccccCc-c
Confidence 211 223344567888888888743 33321 1223 788999999887633221 24567899999998874 3
Q ss_pred chhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHH
Q 012001 292 SADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYAS 371 (473)
Q Consensus 292 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 371 (473)
.. ...+..+++|+.|+++++.+.... .+. .++.++.+.+..+ .+++. . .+..+++++.|+++++. +++..
T Consensus 254 ~~--~~~~~~~~~L~~L~l~~~~l~~~~--~~~-~~~~l~~l~~~~n-~l~~~--~-~~~~~~~l~~L~ls~n~-l~~l~ 323 (384)
T d2omza2 254 SN--LAPLSGLTKLTELKLGANQISNIS--PLA-GLTALTNLELNEN-QLEDI--S-PISNLKNLTYLTLYFNN-ISDIS 323 (384)
T ss_dssp CC--CGGGTTCTTCSEEECCSSCCCCCG--GGT-TCTTCSEEECCSS-CCSCC--G-GGGGCTTCSEEECCSSC-CSCCG
T ss_pred CC--CCcccccccCCEeeccCcccCCCC--ccc-ccccccccccccc-ccccc--c-ccchhcccCeEECCCCC-CCCCc
Confidence 22 224678899999999998876432 122 6788899998874 44431 1 25678999999999875 55432
Q ss_pred HHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 372 INSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
. ...+++|++|++++|. +++. ..+. .+++|++|++++|.+++.. .+.++++|+.|++++|
T Consensus 324 --~-l~~l~~L~~L~L~~n~-l~~l--~~l~-~l~~L~~L~l~~N~l~~l~--~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 324 --P-VSSLTKLQRLFFANNK-VSDV--SSLA-NLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383 (384)
T ss_dssp --G-GGGCTTCCEEECCSSC-CCCC--GGGG-GCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCCE
T ss_pred --c-cccCCCCCEEECCCCC-CCCC--hhHc-CCCCCCEEECCCCcCCCCh--hhccCCCCCEeeCCCC
Confidence 2 3579999999999974 6542 2343 8999999999999998754 3778999999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.45 E-value=2.2e-16 Score=139.26 Aligned_cols=252 Identities=14% Similarity=0.203 Sum_probs=140.6
Q ss_pred CCcEEeeccccCCCC--cccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 203 EIRTLDLSYLPITEK--CLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
+++.|+++++.+... ....+.++++|++|++++++.+....+..+.. +++|++|+++++...... ...+...+.|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~--~~~~~~~~~L 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAI--PDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEEC--CGGGGGCTTC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccc--cccccchhhh
Confidence 456666666554432 23455566666666665533332211223444 666666666655422111 1113445666
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCC-CCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS-LKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
+.++++++. .....+..+..+++++.++++++.+....+..+. .+.+ ++.+.+.. +.++.. .+..+... ....+
T Consensus 128 ~~l~l~~N~-~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~-n~l~~~-~~~~~~~l-~~~~l 202 (313)
T d1ogqa_ 128 VTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISR-NRLTGK-IPPTFANL-NLAFV 202 (313)
T ss_dssp CEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCS-SEEEEE-CCGGGGGC-CCSEE
T ss_pred ccccccccc-ccccCchhhccCcccceeeccccccccccccccc-ccccccccccccc-cccccc-cccccccc-ccccc
Confidence 666666552 2334455666777777777777765544333333 3333 35566555 233211 11112222 34456
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
++..+..... .......+++++.+++.++. ++.. +..+. .+++|+.|++++|.+++..+..++++++|+.|++++
T Consensus 203 ~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~-l~~~-~~~~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~ 277 (313)
T d1ogqa_ 203 DLSRNMLEGD--ASVLFGSDKNTQKIHLAKNS-LAFD-LGKVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp ECCSSEEEEC--CGGGCCTTSCCSEEECCSSE-ECCB-GGGCC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred cccccccccc--cccccccccccccccccccc-cccc-ccccc-cccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence 6655432111 12222356788888888765 3221 12222 678899999999988877777788899999999999
Q ss_pred CCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 440 CSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
| +++. .++.+ ..+++|+.+++.+++.+.
T Consensus 278 N-~l~g-~iP~~-~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 278 N-NLCG-EIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp S-EEEE-ECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred C-cccc-cCCCc-ccCCCCCHHHhCCCcccc
Confidence 8 7763 23333 367888888888887654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.42 E-value=3.6e-14 Score=124.35 Aligned_cols=248 Identities=17% Similarity=0.127 Sum_probs=142.4
Q ss_pred CcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
+++++|+++++. ++..+-.. +..+++|++|+++++.+.......+.++++|+.|+++++ .+..... ...+.++
T Consensus 31 ~~l~~L~Ls~N~-i~~l~~~~-f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~----~~~~~l~ 103 (305)
T d1xkua_ 31 PDTALLDLQNNK-ITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE----KMPKTLQ 103 (305)
T ss_dssp TTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS----SCCTTCC
T ss_pred CCCCEEECcCCc-CCCcChhH-hhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCcc----chhhhhh
Confidence 578888888863 43322111 236788888988888777555566778888888888874 3332211 1246778
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccC-chhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEe
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV-SADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (473)
.|.+..+...... .........+..+.+..+... .......+..+++|+.+++.++.+..... ..+++|++|+
T Consensus 104 ~L~~~~n~l~~l~--~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~----~~~~~L~~L~ 177 (305)
T d1xkua_ 104 ELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELH 177 (305)
T ss_dssp EEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS----SCCTTCSEEE
T ss_pred hhhccccchhhhh--hhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc----ccCCccCEEE
Confidence 8877765432211 122344566666666554322 12223456667788888888876543211 1356788888
Q ss_pred cCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeec
Q 012001 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (473)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (473)
+.++. .... ....+..++.++.|+++++. ++..... ....+++|++|++++|. ++... ..+. .+++|+.|+++
T Consensus 178 l~~n~-~~~~-~~~~~~~~~~l~~L~~s~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-L~~lp-~~l~-~l~~L~~L~Ls 250 (305)
T d1xkua_ 178 LDGNK-ITKV-DAASLKGLNNLAKLGLSFNS-ISAVDNG-SLANTPHLRELHLNNNK-LVKVP-GGLA-DHKYIQVVYLH 250 (305)
T ss_dssp CTTSC-CCEE-CTGGGTTCTTCCEEECCSSC-CCEECTT-TGGGSTTCCEEECCSSC-CSSCC-TTTT-TCSSCCEEECC
T ss_pred CCCCc-CCCC-ChhHhhcccccccccccccc-ccccccc-cccccccceeeeccccc-ccccc-cccc-cccCCCEEECC
Confidence 87643 2221 12334566777777777654 4332221 12356777777777753 33210 1122 66777777777
Q ss_pred ccccChhhhhhh------hcCCCCCeeecCCCCCcc
Q 012001 415 ENEVNDEGLKSI------SRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 415 ~~~~~~~~~~~l------~~~~~L~~L~l~~~~~l~ 444 (473)
+|.++..+...+ ...++|+.|++++| .++
T Consensus 251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N-~~~ 285 (305)
T d1xkua_ 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQ 285 (305)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSC
T ss_pred CCccCccChhhccCcchhcccCCCCEEECCCC-cCc
Confidence 776665432222 23566777777777 444
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.36 E-value=1.9e-12 Score=107.62 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred hCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012001 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (473)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (473)
..+++++.+.+.++.+++- ..+. .+++|+.+.++++....... +...+.++.+.++++....... ...+
T Consensus 82 ~~l~~l~~l~~~~n~~~~i--~~l~-~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~----~~~~ 150 (227)
T d1h6ua2 82 KNLTKITELELSGNPLKNV--SAIA-GLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP----LAGL 150 (227)
T ss_dssp TTCCSCCEEECCSCCCSCC--GGGT-TCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG----GGGC
T ss_pred ccccccccccccccccccc--cccc-ccccccccccccccccccch----hccccchhhhhchhhhhchhhh----hccc
Confidence 3444444444444443321 1122 44555555555533222111 2234566666665543221111 1346
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCC
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 459 (473)
++|+.|.+.+|......+ + .++++|+.|++++|.+++. ..++.+++|++|++++| ++++ +.. .+.+++|+
T Consensus 151 ~~L~~L~l~~n~~~~~~~---l-~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N-~lt~--i~~-l~~l~~L~ 220 (227)
T d1h6ua2 151 TNLQYLSIGNAQVSDLTP---L-ANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN-QISD--VSP-LANTSNLF 220 (227)
T ss_dssp TTCCEEECCSSCCCCCGG---G-TTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTS-CCCB--CGG-GTTCTTCC
T ss_pred cccccccccccccccchh---h-cccccceecccCCCccCCC--hhhcCCCCCCEEECcCC-cCCC--Ccc-cccCCCCC
Confidence 677777776654222222 2 2677888888888877663 34667788888888888 7774 332 34788888
Q ss_pred eeecCC
Q 012001 460 ELDLYR 465 (473)
Q Consensus 460 ~L~l~~ 465 (473)
.|++++
T Consensus 221 ~L~lsn 226 (227)
T d1h6ua2 221 IVTLTN 226 (227)
T ss_dssp EEEEEE
T ss_pred EEEeeC
Confidence 887753
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.35 E-value=4.3e-15 Score=130.79 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=133.8
Q ss_pred hCCCCcEEeecc-ccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCc
Q 012001 200 KCQEIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (473)
Q Consensus 200 ~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (473)
.+++|++|++++ +.+.+..+..+.++++|++|+++++. +.......+.. +++|+.++++.+..... +...+..++
T Consensus 74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~-~~~L~~l~l~~N~~~~~--~p~~l~~l~ 149 (313)
T d1ogqa_ 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQ-IKTLVTLDFSYNALSGT--LPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGG-CTTCCEEECCSSEEESC--CCGGGGGCT
T ss_pred cCccccccccccccccccccccccccccccchhhhcccc-ccccccccccc-hhhhccccccccccccc--CchhhccCc
Confidence 556666666654 34544455556666666666666532 22211112222 56677776665542221 111245567
Q ss_pred ccceeeccccccCchhHHHhhhCCCCC-CeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 279 YLQQLILAYSFWVSADLSKCLHNFPML-QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
.++.++++++. +...++..+..+.++ +.+.+.++.+....+..+. . .....+++..+.... .++.....+++++
T Consensus 150 ~L~~l~l~~n~-l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~-~-l~~~~l~l~~~~~~~--~~~~~~~~~~~l~ 224 (313)
T d1ogqa_ 150 NLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-N-LNLAFVDLSRNMLEG--DASVLFGSDKNTQ 224 (313)
T ss_dssp TCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-G-CCCSEEECCSSEEEE--CCGGGCCTTSCCS
T ss_pred ccceeeccccc-ccccccccccccccccccccccccccccccccccc-c-ccccccccccccccc--ccccccccccccc
Confidence 77777777653 333445556666654 7777777766544333332 2 344456666532211 1222344568889
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.+++.++. +... ... ...+++|+.|+++++. ++......+. ++++|+.|++++|.++...+ .++++++|+.+++
T Consensus 225 ~l~~~~~~-l~~~-~~~-~~~~~~L~~L~Ls~N~-l~g~iP~~l~-~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l 298 (313)
T d1ogqa_ 225 KIHLAKNS-LAFD-LGK-VGLSKNLNGLDLRNNR-IYGTLPQGLT-QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298 (313)
T ss_dssp EEECCSSE-ECCB-GGG-CCCCTTCCEEECCSSC-CEECCCGGGG-GCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGT
T ss_pred cccccccc-cccc-ccc-cccccccccccCccCe-ecccCChHHh-CCCCCCEEECcCCcccccCC-CcccCCCCCHHHh
Confidence 99888765 3221 112 2457899999999855 4432222333 88999999999999986543 4567889999999
Q ss_pred CCCCCcc
Q 012001 438 GICSNIT 444 (473)
Q Consensus 438 ~~~~~l~ 444 (473)
++|+.+.
T Consensus 299 ~~N~~l~ 305 (313)
T d1ogqa_ 299 ANNKCLC 305 (313)
T ss_dssp CSSSEEE
T ss_pred CCCcccc
Confidence 9995454
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.7e-13 Score=118.55 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=15.2
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeecc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLE 234 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 234 (473)
.+++|++|+++++.+.......+...+.++++.+.
T Consensus 54 ~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~ 88 (284)
T d1ozna_ 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (284)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 34455555555544443333333334444444443
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.1e-12 Score=74.15 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=34.3
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 12 ~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
|+.||+||+.+||+ ||+ .+|+.++++|||+|++++..
T Consensus 1 f~~LP~eil~~If~-~L~-~~dl~~~~~Vcr~w~~l~~~ 37 (41)
T d1fs1a1 1 WDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASD 37 (41)
T ss_dssp CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCcCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCC
Confidence 67899999999999 997 99999999999999998753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.29 E-value=4e-12 Score=103.09 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=94.8
Q ss_pred cccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
+++++|+++++.. .. ...+..+++|+.|++++|.+++... +. .+++|++|+++++....- . .+..++.|+
T Consensus 40 ~~l~~L~l~~~~i-~~--l~~l~~l~nL~~L~Ls~N~l~~~~~--l~-~l~~L~~L~l~~n~~~~~---~-~l~~l~~L~ 109 (199)
T d2omxa2 40 DQVTTLQADRLGI-KS--IDGVEYLNNLTQINFSNNQLTDITP--LK-NLTKLVDILMNNNQIADI---T-PLANLTNLT 109 (199)
T ss_dssp TTCCEEECTTSCC-CC--CTTGGGCTTCCEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCCCCC---G-GGTTCTTCS
T ss_pred cCCCEEECCCCCC-CC--ccccccCCCcCcCccccccccCccc--cc-CCcccccccccccccccc---c-ccccccccc
Confidence 4555555554421 11 1234556667777777766554321 22 566777777776432221 1 144667777
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.|+++++....... ...+++|+.|+++++. +.. +..+. .+++|+.|++.+|.+++. ..++++++|++|++
T Consensus 110 ~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~--~~~l~-~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~l 179 (199)
T d2omxa2 110 GLTLFNNQITDIDP----LKNLTNLNRLELSSNT-ISD--ISALS-GLTSLQQLNFSSNQVTDL--KPLANLTTLERLDI 179 (199)
T ss_dssp EEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCC--CGGGT-TCTTCSEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred cccccccccccccc----cchhhhhHHhhhhhhh-hcc--ccccc-ccccccccccccccccCC--ccccCCCCCCEEEC
Confidence 77777665433221 2357788888887754 332 12222 678888888888877764 34677888888888
Q ss_pred CCCCCcchHHHHHHHhcCccCCee
Q 012001 438 GICSNITDEGLKHVGSTCSMLKEL 461 (473)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~~~L~~L 461 (473)
++| ++++ ++.+ .++++|++|
T Consensus 180 s~N-~i~~--i~~l-~~L~~L~~L 199 (199)
T d2omxa2 180 SSN-KVSD--ISVL-AKLTNLESL 199 (199)
T ss_dssp CSS-CCCC--CGGG-GGCTTCSEE
T ss_pred CCC-CCCC--Cccc-cCCCCCCcC
Confidence 888 7775 3333 367777765
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.28 E-value=1.7e-12 Score=113.51 Aligned_cols=246 Identities=16% Similarity=0.122 Sum_probs=167.2
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
+++++|++++|.++.-....+.++++|++|+++++.. .......+.. +++|+.|+++++. ++... ....+.++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~-~~i~~~~f~~-l~~L~~L~l~~n~-l~~l~----~~~~~~l~ 103 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAP-LVKLERLYLSKNQ-LKELP----EKMPKTLQ 103 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-CCBCTTTTTT-CTTCCEEECCSSC-CSBCC----SSCCTTCC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccc-cccchhhhhC-CCccCEecccCCc-cCcCc----cchhhhhh
Confidence 6899999999988754445678899999999998643 3322233444 8999999999876 32211 12346788
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChh--HHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARS--GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
.|.+..+. +.......+.....+..+....+..... ....+ ..+++|+.+.+.++ .+... . ...+++|++|
T Consensus 104 ~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~-~~l~~L~~l~l~~n-~l~~l--~--~~~~~~L~~L 176 (305)
T d1xkua_ 104 ELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADT-NITTI--P--QGLPPSLTEL 176 (305)
T ss_dssp EEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSS-CCCSC--C--SSCCTTCSEE
T ss_pred hhhccccc-hhhhhhhhhhccccccccccccccccccCCCcccc-ccccccCccccccC-Ccccc--C--cccCCccCEE
Confidence 88887753 3333344456677888888877653322 12222 36789999999885 33321 1 1235899999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
+++++.... ... .....++.++.|+++++. ++......+. ++++|++|++++|.++... ..+..+++|+.|++++
T Consensus 177 ~l~~n~~~~-~~~-~~~~~~~~l~~L~~s~n~-l~~~~~~~~~-~l~~L~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~ 251 (305)
T d1xkua_ 177 HLDGNKITK-VDA-ASLKGLNNLAKLGLSFNS-ISAVDNGSLA-NTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHN 251 (305)
T ss_dssp ECTTSCCCE-ECT-GGGTTCTTCCEEECCSSC-CCEECTTTGG-GSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCS
T ss_pred ECCCCcCCC-CCh-hHhhcccccccccccccc-cccccccccc-ccccceeeecccccccccc-cccccccCCCEEECCC
Confidence 998865322 212 222568899999999864 5543333333 8899999999999888653 4678899999999999
Q ss_pred CCCcchHHHHH-----HHhcCccCCeeecCCCC
Q 012001 440 CSNITDEGLKH-----VGSTCSMLKELDLYRFV 467 (473)
Q Consensus 440 ~~~l~~~~~~~-----~~~~~~~L~~L~l~~c~ 467 (473)
| +++..+-.. .....++|+.|++++++
T Consensus 252 N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 252 N-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp S-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred C-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 9 887532222 22356789999999987
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.8e-13 Score=115.72 Aligned_cols=176 Identities=16% Similarity=0.101 Sum_probs=104.1
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCC
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (473)
++++.|+++++.. +... ...+..+++|++|+++++. +.. + ..+..+++|+.|++++|.+..... ....+++|+
T Consensus 31 ~~l~~L~Ls~N~i-~~l~-~~~f~~l~~L~~L~L~~N~-l~~-l-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~ 103 (266)
T d1p9ag_ 31 KDTTILHLSENLL-YTFS-LATLMPYTRLTQLNLDRAE-LTK-L-QVDGTLPVLGTLDLSHNQLQSLPL--LGQTLPALT 103 (266)
T ss_dssp TTCCEEECTTSCC-SEEE-GGGGTTCTTCCEEECTTSC-CCE-E-ECCSCCTTCCEEECCSSCCSSCCC--CTTTCTTCC
T ss_pred cCCCEEECcCCcC-CCcC-HHHhhcccccccccccccc-ccc-c-cccccccccccccccccccccccc--ccccccccc
Confidence 4788898888763 2211 1124567888888888773 321 1 234567888888888887653211 122567888
Q ss_pred eEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCee
Q 012001 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEEL 411 (473)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 411 (473)
.|+++++. +... ....+..+++++.|.++++. ++.... .....+++|+.++++++. ++......+. .+++|++|
T Consensus 104 ~L~l~~~~-~~~~-~~~~~~~l~~l~~L~l~~n~-l~~l~~-~~~~~l~~l~~l~l~~N~-l~~~~~~~~~-~l~~L~~L 177 (266)
T d1p9ag_ 104 VLDVSFNR-LTSL-PLGALRGLGELQELYLKGNE-LKTLPP-GLLTPTPKLEKLSLANNN-LTELPAGLLN-GLENLDTL 177 (266)
T ss_dssp EEECCSSC-CCCC-CSSTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CSCCCTTTTT-TCTTCCEE
T ss_pred cccccccc-ccee-eccccccccccccccccccc-cceecc-ccccccccchhccccccc-ccccCccccc-ccccccee
Confidence 88887743 2211 11123455778888887654 332211 112346778888887743 4432222222 67788888
Q ss_pred eecccccChhhhhhhhcCCCCCeeecCCCC
Q 012001 412 DITENEVNDEGLKSISRCSKLSSLKLGICS 441 (473)
Q Consensus 412 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (473)
++++|.++.. ...+..+++|+.|++++|+
T Consensus 178 ~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 178 LLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp ECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred ecccCCCccc-ChhHCCCCCCCEEEecCCC
Confidence 8888877743 3445567778888888773
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=8.5e-13 Score=114.00 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=18.9
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
.+++|++|+++++.+.......+...++|+.+.+.+
T Consensus 103 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 138 (284)
T d1ozna_ 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138 (284)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCCEEecCCcccccccccccchhcccchhhhcc
Confidence 455666666666554433333444455555555555
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.23 E-value=8.7e-12 Score=101.93 Aligned_cols=164 Identities=21% Similarity=0.241 Sum_probs=100.2
Q ss_pred cccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
.+|+.|+++++.. .. ...+..+++|+.|++++|.+++-. .+. .+++|+.|+++++ .+++ ++ .+..+++|+
T Consensus 46 ~~L~~L~l~~~~i-~~--l~~l~~l~~L~~L~L~~n~i~~l~--~~~-~l~~L~~L~l~~n-~i~~--l~-~l~~l~~L~ 115 (210)
T d1h6ta2 46 NSIDQIIANNSDI-KS--VQGIQYLPNVTKLFLNGNKLTDIK--PLA-NLKNLGWLFLDEN-KVKD--LS-SLKDLKKLK 115 (210)
T ss_dssp HTCCEEECTTSCC-CC--CTTGGGCTTCCEEECCSSCCCCCG--GGT-TCTTCCEEECCSS-CCCC--GG-GGTTCTTCC
T ss_pred cCccEEECcCCCC-CC--chhHhhCCCCCEEeCCCccccCcc--ccc-cCccccccccccc-cccc--cc-ccccccccc
Confidence 3556666655422 11 123456667777777777665422 122 5677777777763 4543 22 244567777
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.|+++++.... +.. ...+++++.++++++. +++.. . ...+++|+.+++++|.+++. ..++.+++|++|++
T Consensus 116 ~L~l~~~~~~~---~~~-l~~l~~l~~l~~~~n~-l~~~~--~-~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~L 185 (210)
T d1h6ta2 116 SLSLEHNGISD---ING-LVHLPQLESLYLGNNK-ITDIT--V-LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYL 185 (210)
T ss_dssp EEECTTSCCCC---CGG-GGGCTTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ccccccccccc---ccc-cccccccccccccccc-ccccc--c-cccccccccccccccccccc--ccccCCCCCCEEEC
Confidence 78777665222 111 2456788888887754 44321 1 22678888888888877753 34677888888888
Q ss_pred CCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 438 GICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
++| .+++ ++. ..++++|++|++++
T Consensus 186 s~N-~i~~--l~~-l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 SKN-HISD--LRA-LAGLKNLDVLELFS 209 (210)
T ss_dssp CSS-CCCB--CGG-GTTCTTCSEEEEEE
T ss_pred CCC-CCCC--Chh-hcCCCCCCEEEccC
Confidence 888 7774 343 34788888888764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.23 E-value=1.6e-11 Score=101.90 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=123.4
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+.+|+.|.+.++. +.. + ..+..+++|+.|++++|.+.+... + ..+++++.+.+.++ .+++ +. .+..+++|
T Consensus 40 l~~L~~L~l~~~~-i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l-~~l~~l~~l~~~~n-~~~~--i~-~l~~l~~L 109 (227)
T d1h6ua2 40 LDGITTLSAFGTG-VTT-I-EGVQYLNNLIGLELKDNQITDLAP--L-KNLTKITELELSGN-PLKN--VS-AIAGLQSI 109 (227)
T ss_dssp HHTCCEEECTTSC-CCC-C-TTGGGCTTCCEEECCSSCCCCCGG--G-TTCCSCCEEECCSC-CCSC--CG-GGTTCTTC
T ss_pred cCCcCEEECCCCC-CCc-c-hhHhcCCCCcEeecCCceeecccc--c-cccccccccccccc-cccc--cc-cccccccc
Confidence 4678888887763 332 2 457789999999999998765432 3 37899999999985 3432 22 24578999
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeee
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (473)
+.+.++++....... ....+.++.+.++.+.......+ ..+++|+.|++++|.+++.. .++++++|+.|+
T Consensus 110 ~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~ 179 (227)
T d1h6ua2 110 KTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLK 179 (227)
T ss_dssp CEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred cccccccccccccch----hccccchhhhhchhhhhchhhhh----ccccccccccccccccccch--hhcccccceecc
Confidence 999999876433222 13578999999988654332322 27899999999999887643 477899999999
Q ss_pred cCCCCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 437 LGICSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 437 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
+++| ++++ +.. ..++++|++|++++| +++
T Consensus 180 Ls~n-~l~~--l~~-l~~l~~L~~L~Ls~N-~lt 208 (227)
T d1h6ua2 180 ADDN-KISD--ISP-LASLPNLIEVHLKNN-QIS 208 (227)
T ss_dssp CCSS-CCCC--CGG-GGGCTTCCEEECTTS-CCC
T ss_pred cCCC-ccCC--Chh-hcCCCCCCEEECcCC-cCC
Confidence 9999 8885 333 458999999999999 455
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.18 E-value=8.7e-11 Score=94.99 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=84.0
Q ss_pred cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
.+++|++|+++++. +... ..+.++++|+.|+++++.+.... .+. .+++|+.|+++++....... +..+++
T Consensus 60 ~l~nL~~L~Ls~N~-l~~~--~~l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~~~~~~~~~----~~~l~~ 129 (199)
T d2omxa2 60 YLNNLTQINFSNNQ-LTDI--TPLKNLTKLVDILMNNNQIADIT--PLA-NLTNLTGLTLFNNQITDIDP----LKNLTN 129 (199)
T ss_dssp GCTTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCCCG--GGT-TCTTCSEEECCSSCCCCCGG----GTTCTT
T ss_pred cCCCcCcCcccccc-ccCc--ccccCCccccccccccccccccc--ccc-cccccccccccccccccccc----cchhhh
Confidence 34555555555542 2211 12556666666666666544322 122 56777777777654333211 345678
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCee
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (473)
|+.|+++++. +... .. ...+++|+.|++.+|. +++. ..+. ++++|+.|++++|.+++. ..++++++|++|
T Consensus 130 L~~L~l~~n~-l~~~--~~-l~~~~~L~~L~l~~n~-l~~l--~~l~-~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L 199 (199)
T d2omxa2 130 LNRLELSSNT-ISDI--SA-LSGLTSLQQLNFSSNQ-VTDL--KPLA-NLTTLERLDISSNKVSDI--SVLAKLTNLESL 199 (199)
T ss_dssp CSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSC-CCCC--GGGT-TCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred hHHhhhhhhh-hccc--cc-cccccccccccccccc-ccCC--cccc-CCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence 8888887764 3322 12 2467888888888754 4432 2233 789999999999988874 346778888875
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.17 E-value=7e-11 Score=96.44 Aligned_cols=144 Identities=20% Similarity=0.185 Sum_probs=87.8
Q ss_pred cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
.+++|++|+++++. +.+ ...+..+++|+.|++++|.+.+-. .+. .+++|+.|++.++.... +. .+..++.
T Consensus 66 ~l~~L~~L~L~~n~-i~~--l~~~~~l~~L~~L~l~~n~i~~l~--~l~-~l~~L~~L~l~~~~~~~---~~-~l~~l~~ 135 (210)
T d1h6ta2 66 YLPNVTKLFLNGNK-LTD--IKPLANLKNLGWLFLDENKVKDLS--SLK-DLKKLKSLSLEHNGISD---IN-GLVHLPQ 135 (210)
T ss_dssp GCTTCCEEECCSSC-CCC--CGGGTTCTTCCEEECCSSCCCCGG--GGT-TCTTCCEEECTTSCCCC---CG-GGGGCTT
T ss_pred hCCCCCEEeCCCcc-ccC--ccccccCccccccccccccccccc--ccc-ccccccccccccccccc---cc-ccccccc
Confidence 34555555555542 221 112455666777777666655421 222 56777777777643222 11 2446678
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCee
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (473)
++.+.++++. +++.. ....+++|+.++++++. +++ +..+. ++++|++|++++|.+++. ..++.+++|+.|
T Consensus 136 l~~l~~~~n~-l~~~~---~~~~l~~L~~l~l~~n~-l~~--i~~l~-~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L 205 (210)
T d1h6ta2 136 LESLYLGNNK-ITDIT---VLSRLTKLDTLSLEDNQ-ISD--IVPLA-GLTKLQNLYLSKNHISDL--RALAGLKNLDVL 205 (210)
T ss_dssp CCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSC-CCC--CGGGT-TCTTCCEEECCSSCCCBC--GGGTTCTTCSEE
T ss_pred cccccccccc-ccccc---ccccccccccccccccc-ccc--ccccc-CCCCCCEEECCCCCCCCC--hhhcCCCCCCEE
Confidence 8888887654 44321 12457888888888864 443 22233 789999999999988864 457789999999
Q ss_pred ecCC
Q 012001 436 KLGI 439 (473)
Q Consensus 436 ~l~~ 439 (473)
++++
T Consensus 206 ~Ls~ 209 (210)
T d1h6ta2 206 ELFS 209 (210)
T ss_dssp EEEE
T ss_pred EccC
Confidence 8864
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3.3e-11 Score=102.58 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=18.4
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
.+++|+.|+++++.+.......+..+++++.|.+.+
T Consensus 98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~ 133 (266)
T d1p9ag_ 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (266)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred cccccccccccccccceeeccccccccccccccccc
Confidence 445566666655544433333344455555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.8e-10 Score=89.23 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=41.5
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCCCCCeeecCCCCCcchHH-H-HHHHhc
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNITDEG-L-KHVGST 454 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~-~-~~~~~~ 454 (473)
.+++|+.|++++|. ++.... .+...+++|+.|++++|.+++.. +..+..+++|++|++++| .++... . ......
T Consensus 61 ~l~~L~~L~ls~N~-i~~l~~-~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~ 137 (162)
T d1a9na_ 61 LLRRLKTLLVNNNR-ICRIGE-GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYK 137 (162)
T ss_dssp CCSSCCEEECCSSC-CCEECS-CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHH
T ss_pred cCcchhhhhccccc-ccCCCc-cccccccccccceeccccccccccccccccccccchhhcCCC-ccccccchHHHHHHH
Confidence 34555555555533 322111 11125566666666666665532 344556666666666666 444321 1 123345
Q ss_pred CccCCeee
Q 012001 455 CSMLKELD 462 (473)
Q Consensus 455 ~~~L~~L~ 462 (473)
+|+|++|+
T Consensus 138 lp~L~~LD 145 (162)
T d1a9na_ 138 VPQVRVLD 145 (162)
T ss_dssp CTTCSEET
T ss_pred CCCcCeeC
Confidence 66666665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.93 E-value=2.7e-10 Score=101.47 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=92.3
Q ss_pred CCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcC
Q 012001 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178 (473)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (473)
.++++|+++++. ++. ++ ...++|++|+++++ .+++.+ ....+|++|++.++. ++. +..-.+.|
T Consensus 38 ~~l~~LdLs~~~-L~~--lp---~~~~~L~~L~Ls~N-~l~~lp----~~~~~L~~L~l~~n~-l~~-----l~~lp~~L 100 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSS--LP---ELPPHLESLVASCN-SLTELP----ELPQSLKSLLVDNNN-LKA-----LSDLPPLL 100 (353)
T ss_dssp HTCSEEECTTSC-CSC--CC---SCCTTCSEEECCSS-CCSSCC----CCCTTCCEEECCSSC-CSC-----CCSCCTTC
T ss_pred cCCCEEEeCCCC-CCC--CC---CCCCCCCEEECCCC-CCcccc----cchhhhhhhhhhhcc-cch-----hhhhcccc
Confidence 468888887764 221 11 23578888888876 455432 124678888777653 221 11112457
Q ss_pred ceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEe
Q 012001 179 KLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALN 258 (473)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 258 (473)
++|+++++. +...+ . ...+++|+.|++.++.+.... . ..+.+..+.+..+...... .+.. ++.++.+.
T Consensus 101 ~~L~L~~n~-l~~lp--~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~~~---~l~~-l~~l~~L~ 168 (353)
T d1jl5a_ 101 EYLGVSNNQ-LEKLP--E-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEELP---ELQN-LPFLTAIY 168 (353)
T ss_dssp CEEECCSSC-CSSCC--C-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCC---CCTT-CTTCCEEE
T ss_pred ccccccccc-ccccc--c-hhhhccceeeccccccccccc-c---ccccccchhhccccccccc---cccc-cccceecc
Confidence 777777653 32221 1 125567777777666443211 1 1234444444432211111 1112 56667776
Q ss_pred cCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCC
Q 012001 259 LSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (473)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (473)
+..+...... ......+.+...+.. . ........++.|+.+++.++...... ....++..+.+..
T Consensus 169 l~~n~~~~~~------~~~~~~~~l~~~~~~-~--~~~~~~~~l~~L~~l~l~~n~~~~~~-----~~~~~l~~~~~~~ 233 (353)
T d1jl5a_ 169 ADNNSLKKLP------DLPLSLESIVAGNNI-L--EELPELQNLPFLTTIYADNNLLKTLP-----DLPPSLEALNVRD 233 (353)
T ss_dssp CCSSCCSSCC------CCCTTCCEEECCSSC-C--SSCCCCTTCTTCCEEECCSSCCSSCC-----SCCTTCCEEECCS
T ss_pred cccccccccc------ccccccccccccccc-c--cccccccccccccccccccccccccc-----ccccccccccccc
Confidence 6654422110 011122233332221 1 11122345677777777776533211 1234556665554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.92 E-value=1.4e-08 Score=78.81 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=79.0
Q ss_pred hHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEccCCC
Q 012001 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCK 391 (473)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 391 (473)
+.++.+....++|++|+++++..++++++..++. ..++|++|++++|. +++.+...++ ...+.|+.|++++|.
T Consensus 5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~ 83 (167)
T d1pgva_ 5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF 83 (167)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh
Confidence 4456666567888888888766677776665544 34678888888764 7766554443 346778888888764
Q ss_pred CCCHHHHHHHHh---cCccCCeeeeccc---ccChhhhhhhh----cCCCCCeeecCCC
Q 012001 392 LVSWEAFVLIGQ---QCQYLEELDITEN---EVNDEGLKSIS----RCSKLSSLKLGIC 440 (473)
Q Consensus 392 ~~~~~~~~~~~~---~~~~L~~L~l~~~---~~~~~~~~~l~----~~~~L~~L~l~~~ 440 (473)
+++.+...++. ..+.|++|++++| .+++.+...++ ..++|+.|+++.+
T Consensus 84 -i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 84 -LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred -cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 77777666654 3456888888765 34444444433 4677777777665
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.86 E-value=5.5e-08 Score=75.48 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=81.3
Q ss_pred hHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEccCCC
Q 012001 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCK 391 (473)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 391 (473)
+.+..+....++|++|++.++..+++.++..++. ..++|++|++++|. +++.+...++. ..++++.+++.+|.
T Consensus 7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 4455555567888888888766777777666554 45778888888774 77776655443 46778888887754
Q ss_pred CCCHHHHHHHHh---cCccCCeeeec--ccccChhhhhhhh----cCCCCCeeecCCC
Q 012001 392 LVSWEAFVLIGQ---QCQYLEELDIT--ENEVNDEGLKSIS----RCSKLSSLKLGIC 440 (473)
Q Consensus 392 ~~~~~~~~~~~~---~~~~L~~L~l~--~~~~~~~~~~~l~----~~~~L~~L~l~~~ 440 (473)
+++.+...+.. ..++|+.++|. +|.+++.+...++ .+++|++|++..+
T Consensus 86 -~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 86 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred -ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 66666665553 45667765554 4577777666554 5777888877766
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.86 E-value=4.5e-10 Score=100.06 Aligned_cols=313 Identities=14% Similarity=0.090 Sum_probs=171.5
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC-
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA- 149 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~- 149 (473)
.+++.|+++++. ++. +| ...++|++|+++++. ++. +-....+|++|++.++. ++. +..+
T Consensus 38 ~~l~~LdLs~~~-L~~-----lp--~~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~l~~n~-l~~-----l~~lp 97 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSS-----LP--ELPPHLESLVASCNS-LTE-----LPELPQSLKSLLVDNNN-LKA-----LSDLP 97 (353)
T ss_dssp HTCSEEECTTSC-CSC-----CC--SCCTTCSEEECCSSC-CSS-----CCCCCTTCCEEECCSSC-CSC-----CCSCC
T ss_pred cCCCEEEeCCCC-CCC-----CC--CCCCCCCEEECCCCC-Ccc-----cccchhhhhhhhhhhcc-cch-----hhhhc
Confidence 468899998763 222 31 345789999998764 331 12245789999998873 332 2233
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
+.|++|++.++. +.... .+ ..+++|+.|++.++...... ...+.+..+.+..+.. .....+..++.++
T Consensus 98 ~~L~~L~L~~n~-l~~lp--~~-~~l~~L~~L~l~~~~~~~~~------~~~~~l~~l~~~~~~~--~~~~~l~~l~~l~ 165 (353)
T d1jl5a_ 98 PLLEYLGVSNNQ-LEKLP--EL-QNSSFLKIIDVDNNSLKKLP------DLPPSLEFIAAGNNQL--EELPELQNLPFLT 165 (353)
T ss_dssp TTCCEEECCSSC-CSSCC--CC-TTCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCC--SSCCCCTTCTTCC
T ss_pred cccccccccccc-ccccc--ch-hhhccceeeccccccccccc------cccccccchhhccccc--cccccccccccce
Confidence 469999999875 33221 22 23789999999876432111 1346777777766533 2334555678888
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
.+.+..+..... .......+.+............ ...++.|+.+.++++.... . .....++..+.
T Consensus 166 ~L~l~~n~~~~~------~~~~~~~~~l~~~~~~~~~~~~----~~~l~~L~~l~l~~n~~~~--~---~~~~~~l~~~~ 230 (353)
T d1jl5a_ 166 AIYADNNSLKKL------PDLPLSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKT--L---PDLPPSLEALN 230 (353)
T ss_dssp EEECCSSCCSSC------CCCCTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSS--C---CSCCTTCCEEE
T ss_pred eccccccccccc------cccccccccccccccccccccc----ccccccccccccccccccc--c---ccccccccccc
Confidence 888876432211 1112234444444332111100 2346778888887653211 1 12345677777
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhC-CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH-KELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (473)
+..+.+.... ...+++....+... .... +..+ ......++..+. +.. +...+++|++|+++
T Consensus 231 ~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~------l~~l~~~~~~~~~~~~~-~~~-----~~~~~~~L~~L~Ls 292 (353)
T d1jl5a_ 231 VRDNYLTDLP-----ELPQSLTFLDVSEN-IFSG------LSELPPNLYYLNASSNE-IRS-----LCDLPPSLEELNVS 292 (353)
T ss_dssp CCSSCCSCCC-----CCCTTCCEEECCSS-CCSE------ESCCCTTCCEEECCSSC-CSE-----ECCCCTTCCEEECC
T ss_pred cccccccccc-----cccccccccccccc-cccc------cccccchhcccccccCc-ccc-----ccccCCCCCEEECC
Confidence 7766543211 02345555555432 1111 0111 233444444322 211 11236788888888
Q ss_pred CCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecC
Q 012001 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLY 464 (473)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 464 (473)
+|. ++. +...+++|+.|++++|.+++.. ..+++|++|++++| .++. ++. ...+|+.|.+.
T Consensus 293 ~N~-l~~-----lp~~~~~L~~L~L~~N~L~~l~----~~~~~L~~L~L~~N-~L~~--lp~---~~~~L~~L~~~ 352 (353)
T d1jl5a_ 293 NNK-LIE-----LPALPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYN-PLRE--FPD---IPESVEDLRMN 352 (353)
T ss_dssp SSC-CSC-----CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSS--CCC---CCTTCCEEECC
T ss_pred CCc-cCc-----cccccCCCCEEECCCCcCCccc----cccCCCCEEECcCC-cCCC--CCc---cccccCeeECc
Confidence 864 432 1124678888888888877532 12567888999888 5763 222 23356666553
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=3.6e-10 Score=79.21 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=38.0
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
..|+++.||+||+.+||+ ||+ .+|++++++|||+|++++...
T Consensus 2 k~D~~~~LP~Ell~~I~s-~Ld-~~dL~~~s~Vcr~W~~~~~~d 43 (100)
T d1nexb1 2 KRDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRKS 43 (100)
T ss_dssp CCCHHHHSCHHHHHHHHT-TSC-HHHHHHHTTTCHHHHHHHHTC
T ss_pred CCCchhhCCHHHHHHHHH-CCC-HHHHHHHHHHHHHHHHHHHCC
Confidence 357899999999999999 996 999999999999999987643
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=9.5e-12 Score=104.61 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=22.3
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (473)
++.++++.+..+..+.......+..+++|+.+++.++.+.
T Consensus 77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred ccccccccccccccccccccccccccccccccccchhhhc
Confidence 4555555554433333334445566677777777776554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.79 E-value=4.8e-08 Score=75.71 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=36.9
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEccCCCCCCHHHHHHHH---hcCccCCeeeecccccChhhh
Q 012001 350 VQSHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDEGL 423 (473)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~ 423 (473)
....|+|++|+++++..+++.++..++. ..+.|++|++++|. +++.+...++ ...+.|++|++++|.+++.+.
T Consensus 11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~ 89 (167)
T d1pgva_ 11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELL 89 (167)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence 3333444444444433344444333322 23444444444432 3433322221 133444444444444444444
Q ss_pred hhhh----cCCCCCeeecCCC
Q 012001 424 KSIS----RCSKLSSLKLGIC 440 (473)
Q Consensus 424 ~~l~----~~~~L~~L~l~~~ 440 (473)
..++ ..++|++|++++|
T Consensus 90 ~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 90 ARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhCCcCCEEECCCC
Confidence 3322 2344444444443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=6.6e-10 Score=85.92 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=73.8
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (473)
.++++|+++++. ++.. +.+...+++|+.|+++++. ++.- ..+ ..+++|++|++++|.++......+..+++|+
T Consensus 18 ~~lr~L~L~~n~-I~~i--~~~~~~l~~L~~L~Ls~N~-i~~l--~~~-~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 18 VRDRELDLRGYK-IPVI--ENLGATLDQFDAIDFSDNE-IRKL--DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp TSCEEEECTTSC-CCSC--CCGGGGTTCCSEEECCSSC-CCEE--CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCcEEECCCCC-CCcc--CccccccccCCEEECCCCC-CCcc--CCc-ccCcchhhhhcccccccCCCccccccccccc
Confidence 456666666654 3322 1222456777777777743 4431 112 2789999999999999887655556799999
Q ss_pred eeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 434 SLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 434 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
.|++++| .+++..-......+++|++|++++|+-
T Consensus 91 ~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 91 ELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp EEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred cceeccc-cccccccccccccccccchhhcCCCcc
Confidence 9999999 887532212345899999999999963
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.77 E-value=3.3e-10 Score=91.01 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=19.7
Q ss_pred cCccCCeeeecccccChhh-hhhhhcCCCCCeeecCCC
Q 012001 404 QCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~ 440 (473)
.+++|+.|++++|.+++.. +..+..+++|+.|++++|
T Consensus 113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred ccccccccccccchhccccccccccCCCccceeecCCC
Confidence 4455555555555555432 234455555666666555
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.75 E-value=1.9e-07 Score=72.26 Aligned_cols=71 Identities=11% Similarity=0.205 Sum_probs=29.7
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEccCCCCCCHHHHHHHH---hcCccCCeeeecccccChhhh
Q 012001 352 SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDEGL 423 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~ 423 (473)
..|+|++|+++++..+++.++..++. ..+.|++|++++| .+++.+...++ ...+.++.+++++|.+++.+.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~ 91 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 91 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence 33444444444433344444433332 2344444444443 24443333222 123444444444444444443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=2.5e-09 Score=78.36 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=61.2
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcC
Q 012001 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRC 429 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~ 429 (473)
..+++|++|+++++. ++.. +.....+++|+.|+++++. ++.. +.+. .+++|+.|++++|.+++.. +..+..+
T Consensus 17 ~~l~~L~~L~ls~N~-l~~l--p~~~~~l~~L~~L~l~~N~-i~~l--~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~~ 89 (124)
T d1dcea3 17 EQLLLVTHLDLSHNR-LRAL--PPALAALRCLEVLQASDNA-LENV--DGVA-NLPRLQELLLCNNRLQQSAAIQPLVSC 89 (124)
T ss_dssp GGGTTCCEEECCSSC-CCCC--CGGGGGCTTCCEEECCSSC-CCCC--GGGT-TCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred ccCCCCCEEECCCCc-cCcc--hhhhhhhhccccccccccc-cccc--Cccc-cccccCeEECCCCccCCCCCchhhcCC
Confidence 344556666665543 3321 1112346666666666633 4321 2222 7788888888888877643 4556778
Q ss_pred CCCCeeecCCCCCcchHH--HHHHHhcCccCCee
Q 012001 430 SKLSSLKLGICSNITDEG--LKHVGSTCSMLKEL 461 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L 461 (473)
++|+.|++++| .+++.. ...+...+|+|+.|
T Consensus 90 ~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 90 PRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp TTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence 88888888888 665321 23455567887765
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=1.3e-08 Score=74.43 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=62.4
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.|+++++.++ .+..+.++++|++|+++++ .+.... ..+.. +++|+.|+++++....-.+ +..+++|++|+
T Consensus 1 R~L~Ls~n~l~--~l~~l~~l~~L~~L~ls~N-~l~~lp-~~~~~-l~~L~~L~l~~N~i~~l~~----~~~l~~L~~L~ 71 (124)
T d1dcea3 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHN-RLRALP-PALAA-LRCLEVLQASDNALENVDG----VANLPRLQELL 71 (124)
T ss_dssp SEEECTTSCCS--SCCCGGGGTTCCEEECCSS-CCCCCC-GGGGG-CTTCCEEECCSSCCCCCGG----GTTCSSCCEEE
T ss_pred CEEEcCCCCCC--CCcccccCCCCCEEECCCC-ccCcch-hhhhh-hhcccccccccccccccCc----cccccccCeEE
Confidence 35666666654 2344556666666666663 343321 12333 6666666666655222111 34456666666
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChh--HHHHHHhhCCCCCeE
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARS--GIKAIGNWHGSLKEL 333 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L 333 (473)
++++....-.....+..+++|+.|++++|++.+. ....+...+|+|+.|
T Consensus 72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 6665332222234456677777777777765432 122333345555554
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.5e-09 Score=74.03 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=38.4
Q ss_pred cCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 7 ~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
-..|+++.||+||+.+||+ ||+ +.|+++++.|||+|++++..
T Consensus 14 ~~~D~i~~LP~Eil~~Ils-~Ld-~~dL~~~~~vcr~w~~l~~~ 55 (102)
T d2ovrb1 14 FQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (102)
T ss_dssp CCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred hccCChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHHCC
Confidence 3578999999999999999 996 99999999999999998754
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.67 E-value=1.1e-09 Score=87.97 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=99.0
Q ss_pred ccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcE
Q 012001 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (473)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (473)
.++.+.+.+...-...+...+..+++|+.|+++++.+.+- ..+. .+++|+.|+++++ .+++ ++.+...+++|+.
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~-~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~ 97 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLS-GMENLRILSLGRN-LIKK--IENLDAVADTLEE 97 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC--CCHH-HHTTCCEEECCEE-EECS--CSSHHHHHHHCCE
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc--cccc-CCccccChhhccc-cccc--ccccccccccccc
Confidence 4556666543222234456788899999999999987653 2233 6799999999984 4443 2223334568999
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHH-HHHHHHhcCccCCeeeecccccChhhhhh----------hh
Q 012001 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGLKS----------IS 427 (473)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------l~ 427 (473)
|+++++. ++.. ..+ ..+++|+.|+++++. +++. .+..+. .+++|+.|++++|.+....... +.
T Consensus 98 L~l~~N~-i~~l--~~~-~~l~~L~~L~L~~N~-i~~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~ 171 (198)
T d1m9la_ 98 LWISYNQ-IASL--SGI-EKLVNLRVLYMSNNK-ITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp EECSEEE-CCCH--HHH-HHHHHSSEEEESEEE-CCCHHHHHHHT-TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred ccccccc-cccc--ccc-cccccccccccccch-hcccccccccc-CCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence 9999875 6643 222 457899999999855 5543 445555 8999999999999776543221 34
Q ss_pred cCCCCCeee
Q 012001 428 RCSKLSSLK 436 (473)
Q Consensus 428 ~~~~L~~L~ 436 (473)
.+|+|+.|+
T Consensus 172 ~lp~L~~LD 180 (198)
T d1m9la_ 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCCEES
T ss_pred HCCCcCEeC
Confidence 577777765
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6.9e-11 Score=99.22 Aligned_cols=188 Identities=14% Similarity=0.055 Sum_probs=105.6
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCC-cCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhC
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH 353 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (473)
.++++|++|+++++..........+..+++++.+.+..+ .+.......+ ..+++|+++.+.++ .+............
T Consensus 50 ~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~-~~l~~L~~l~l~~~-~l~~~~~~~~~~~l 127 (242)
T d1xwdc1 50 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNT-GIKHLPDVHKIHSL 127 (242)
T ss_dssp TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE-ECCTTCCEEEEESC-CCCSCCCCTTTCBS
T ss_pred hccchhhhhhhccccccceeeccccccccccccccccccccccccccccc-cccccccccccchh-hhcccccccccccc
Confidence 446677777776654332222344667889999988764 3433332222 26899999999884 44422111112222
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeee-ecccccChhhhhhhhcCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD-ITENEVNDEGLKSISRCSKL 432 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~~~~L 432 (473)
+.+..+...+. .+.......+......++.|++.++ .++..... ....++++++. +.+|.+++.....+.++++|
T Consensus 128 ~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~--~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L 203 (242)
T d1xwdc1 128 QKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKN-GIQEIHNC--AFNGTQLDELNLSDNNNLEELPNDVFHGASGP 203 (242)
T ss_dssp SCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCC
T ss_pred ccccccccccc-ccccccccccccccccceeeecccc-cccccccc--cccchhhhccccccccccccccHHHhcCCCCC
Confidence 33433333332 2332222222122347888888773 34432211 11456666664 45578887766667889999
Q ss_pred CeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 433 SSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 433 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
++|++++| +++..... ..+++++|+.+++.+...+.
T Consensus 204 ~~L~Ls~N-~l~~l~~~-~~~~l~~L~~l~~~~l~~lp 239 (242)
T d1xwdc1 204 VILDISRT-RIHSLPSY-GLENLKKLRARSTYNLKKLP 239 (242)
T ss_dssp SEEECTTS-CCCCCCSS-SCTTCCEEESSSEESSSCSC
T ss_pred CEEECCCC-cCCccCHH-HHcCCcccccCcCCCCCcCC
Confidence 99999999 78743222 23466777777766665554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=3.6e-09 Score=84.70 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=78.3
Q ss_pred CCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCcc
Q 012001 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (473)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (473)
+++++|++++ +.++...-...+..+++|+.|+++++. +..... .....+++|+.|+++++ .++......+ .++++
T Consensus 29 ~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~-~~~~~~~~L~~L~Ls~N-~l~~l~~~~F-~~l~~ 103 (192)
T d1w8aa_ 29 LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGEN-KIKEISNKMF-LGLHQ 103 (192)
T ss_dssp TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSC-CCCEECSSSS-TTCTT
T ss_pred CCCCEEEeCC-CCCcccccccccCCCceEeeeeccccc-cccccc-cccccccccceeeeccc-cccccCHHHH-hCCCc
Confidence 6899999998 555432122345678999999998765 332222 22246789999999985 4554322223 27899
Q ss_pred CCeeeecccccChhhhhhhhcCCCCCeeecCCCC
Q 012001 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (473)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (473)
|++|++++|.++......+..+++|++|++++|+
T Consensus 104 L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccccccCCccccccCHHHhcCCcccccccccccc
Confidence 9999999999988877778889999999999984
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=7.6e-08 Score=69.47 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=36.8
Q ss_pred CCCCcccCc----HHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 8 NSNPFDFLS----EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 8 ~~~~~~~LP----~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
..|++..|| +||+..||+ ||+ .+|++++++|||+|++++..
T Consensus 7 ~~D~i~~LP~~l~~EI~~~Ils-~Ld-~~dL~~~s~Vck~W~~l~~d 51 (118)
T d1p22a1 7 QRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSD 51 (118)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHH
T ss_pred cccHHHHCCCCChHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHHcC
Confidence 457889999 599999999 996 99999999999999998764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.31 E-value=2.6e-08 Score=79.55 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=77.7
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
++++.|++++|.++..........+++|++|+++++ .+... ....+..+++|++|+++++. ++...... ...+++|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~-F~~l~~L 104 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQELQLGENK-IKEISNKM-FLGLHQL 104 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEEECCSCC-CCEECSSS-STTCTTC
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccc-cccccccccccceeeecccc-ccccCHHH-HhCCCcc
Confidence 589999999999865333333337899999999884 44322 22345567999999999875 55432222 2568999
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
+.|+++++. ++......+. .+++|++|++++|.+..
T Consensus 105 ~~L~L~~N~-l~~i~~~~f~-~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 105 KTLNLYDNQ-ISCVMPGSFE-HLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSSC-CCEECTTSST-TCTTCCEEECTTCCBCC
T ss_pred cccccCCcc-ccccCHHHhc-CCccccccccccccccc
Confidence 999999954 6542222222 78999999999986653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=4.7e-07 Score=68.95 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=59.6
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
+..+++|++|++.++..++......+ ..+++|+.|+++++. ++......+. .+++|+.|++++|.++......+ ..
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~-~~ 102 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSG-LRFVAPDAFH-FTPRLSRLNLSFNALESLSWKTV-QG 102 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSC-CCEECTTGGG-SCSCCCEEECCSSCCSCCCSTTT-CS
T ss_pred ccCccccCeeecCCCccccccCchhh-ccccccCcceeeccc-cCCccccccc-ccccccceeccCCCCcccChhhh-cc
Confidence 34567899999976655654433333 468899999998854 5543222233 78899999999998886554444 34
Q ss_pred CCCCeeecCCC
Q 012001 430 SKLSSLKLGIC 440 (473)
Q Consensus 430 ~~L~~L~l~~~ 440 (473)
.+|+.|++++|
T Consensus 103 ~~l~~L~L~~N 113 (156)
T d2ifga3 103 LSLQELVLSGN 113 (156)
T ss_dssp CCCCEEECCSS
T ss_pred ccccccccCCC
Confidence 57889999988
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=4.1e-06 Score=64.09 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=54.4
Q ss_pred HhcCCCCCEEEccCCCCCCH-HHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch------HHH
Q 012001 376 TKTCTSLTSLRMECCKLVSW-EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD------EGL 448 (473)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~------~~~ 448 (473)
...+++|+.|+++++. +++ .++......+++|+.|++++|.+++.......+..+|+.|++++| .++. ...
T Consensus 61 ~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~~~~~y~ 138 (162)
T d1koha1 61 EENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSDTFRDQSTYI 138 (162)
T ss_dssp HHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSSSHHHHH
T ss_pred HHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC-CcCcCcccchhHH
Confidence 3456777777777743 443 233333347888888888888887754333334567888888888 4432 234
Q ss_pred HHHHhcCccCCeee
Q 012001 449 KHVGSTCSMLKELD 462 (473)
Q Consensus 449 ~~~~~~~~~L~~L~ 462 (473)
..+.+.+|+|+.||
T Consensus 139 ~~i~~~~P~L~~LD 152 (162)
T d1koha1 139 SAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHTTSTTCCEET
T ss_pred HHHHHHCCCCCEEC
Confidence 45666788888875
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=5e-06 Score=63.06 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=54.6
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (473)
..+.++..+....+. +..+. .+++|++|++.+.+.++... ...+.++++|+.|+++++. ++.....++ ..+++|+
T Consensus 9 ~~~~l~c~~~~~~~~-p~~l~-~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f-~~l~~L~ 83 (156)
T d2ifga3 9 GSSGLRCTRDGALDS-LHHLP-GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAF-HFTPRLS 83 (156)
T ss_dssp SSSCEECCSSCCCTT-TTTSC-SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGG-GSCSCCC
T ss_pred CCCeEEecCCCCccC-ccccc-CccccCeeecCCCccccccC-chhhccccccCcceeeccc-cCCcccccc-ccccccc
Confidence 344555555444321 22222 45677777776544444221 1124456777777777654 443322222 4567777
Q ss_pred EEEccCCCCCCHHHHHHHHhcCccCCeeeecccccC
Q 012001 384 SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (473)
Q Consensus 384 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (473)
.|+++++. ++......+ ....|+.|+|++|.+.
T Consensus 84 ~L~Ls~N~-l~~l~~~~~--~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 84 RLNLSFNA-LESLSWKTV--QGLSLQELVLSGNPLH 116 (156)
T ss_dssp EEECCSSC-CSCCCSTTT--CSCCCCEEECCSSCCC
T ss_pred ceeccCCC-CcccChhhh--ccccccccccCCCccc
Confidence 77777643 432111111 2345777777776553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=6.2e-05 Score=57.26 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=52.7
Q ss_pred HHHHHhcCccCCeeeecccccChhh--hhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 398 FVLIGQQCQYLEELDITENEVNDEG--LKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 398 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+..+...+++|+.|++++|.+++.. ...+..+++|+.|++++| .+++..-.... ...+|+.+++.++|-
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~Npl 127 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGNSL 127 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTSTT
T ss_pred hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhh-hccccceeecCCCCc
Confidence 4445558999999999999998753 234567999999999999 88864433344 455799999999864
|