Citrus Sinensis ID: 012025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
Protein Sequence
MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSLSLTHTHTHVHRHA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHcccccccEEcccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccEEEEEEcccccccccccccccHHHHHHHHccccccEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHccccHHHHHccccccccccccEEEEEEEEEEcccHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccEEccccccHHHHcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEcccccHcccccccccccccccEEcccEEEEEEccccccccccccccccHHHHHHHHHHHHHHcHHcccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHcccccEEEcccccEEEEEEEEcHHHHHHHHHccccccccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
msarrggkspiaagssntsvkgknvtevsnsqvdhlsgsvadisldsaqddggwEVYVRKsknkagsgttksfgsqnsnykawghldstqkpgmrgngssgrapaktwttvnadskipagrvnarpqltnwvpetnnmatqtgirpplehgwnwqsragstifkhsedghdkesgnldevhkdnveddyddekdddsnvsddsddellsdefdsdtsqkshdtrkKSRWFKKFFESLESLTVeeineparqwhcpacqggpgaidwyrglqplmthaktkgskRVKLHRELAELLDEELRRrgtsvipagevfgkwkglkdtekdheivwppmVIIMNTrldkdendkwtgmgNQELLEYFILYAAVRArhsygpqghrgmSVLIFESSAGGYLEAERLHKHFaeqgtdrdswnnsnRRVLFHAGGKRQLYGFMALKEDldvfnqhchgssfsplslslslthththvhrha
Flexible Loop (DISEMBL)
msarrggkspiaagssntsvkgkNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRksknkagsgttksfgsqnsnykaWGHLDSTQKPGMrgngssgrapaktwttvnadskipagrvnarpqltnwvpetnNMATQTGIRPPLEHGWNWQSRAGSTIFKHSedghdkesgnldevhkdnveddyddekdddsnvsddsddellsdefdsdtsqkshdtrkksrwFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHaktkgskrvkLHRELAELLDeelrrrgtsvipagevfgkwkglkdtekdheivwppmVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFaeqgtdrdswnnsNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSLSLTHTHTHVHRHA
Low Complexity Region (SEG)
MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHkdnveddyddekdddsnvsddsddellsdefdsdTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHrelaelldeelrrrGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHChgssfsplslslslthththvhrhA
Disordered region (IsUnstruct)
*****************************************************WEVY**********************************************************************LTNWV***********I**PLEHGWNWQ*************************************************************************WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAK******VKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFA********WNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSL***************
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************************************************RWFKKFFESLESL*V****EPARQWHCPACQGGPGAIDWYRGLQPLMT*************RELAELLDEELR***********************KDHEIVWPPMVIIMNTRLDKD**********QELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRR****AGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSLSLTHTHTHV****
Disordered Region (DISEMBL)
******************************SQVDHLSGSVADISLDSAQDDGGWEVYVRKS************GSQNSNYKAWGHLDSTQK*************AKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVE***************************************KSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHA********KLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSLSL***********
Disordered Region (DISPRO)
***********************N****SNSQVDHLSGSVADISLDSAQDDGGWEVYVRK***************************************************************************NNMATQTGIRPPLEH*******************************************************ELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSLSLTHT********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSLSLTHTHTHVHRHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	472	2.2.26 [Sep-21-2011]
Q9LDX1	625	Protein SUPPRESSOR OF GEN	yes	no	0.877	0.662	0.553	1e-119
A5YVF1	633	Protein SUPPRESSOR OF GEN	N/A	no	0.862	0.642	0.538	1e-111
A1Y2B7	594	Protein SUPPRESSOR OF GEN	N/A	no	0.650	0.516	0.605	2e-98
Q2QWE9	609	Protein SUPPRESSOR OF GEN	yes	no	0.703	0.545	0.559	2e-93
A2ZIW7	609	Protein SUPPRESSOR OF GEN	N/A	no	0.703	0.545	0.553	5e-92

>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/441 (55%), Positives = 309/441 (70%), Gaps = 27/441 (6%)

Query: 21  KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN 79
           K KNV      +V+ L   +A   L S+QDDGG WEV  +K+KNK G+ + K++ SQNSN
Sbjct: 10  KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSN 69

Query: 80  Y-KAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNM 138
             +AWG     Q+ G RG+  SGR    +         I A  ++ R +  +   + N +
Sbjct: 70  PPRAWG----GQQQG-RGSNVSGRGNNVSGRGNGNGRGIQAN-ISGRGRALSRKYDNNFV 123

Query: 139 ATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDD--EKDDD 196
           A     RPPLE GWNWQ+R GS      ++  D             VEDD D+  E+++D
Sbjct: 124 APPPVSRPPLEGGWNWQARGGSAQHTAVQEFPD-------------VEDDVDNASEEEND 170

Query: 197 SNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPA 256
           S+  DDSDD+L SD++DSD SQKSH +RK+++WFKKFF SL+SL++E+INEP RQWHCPA
Sbjct: 171 SDALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPA 230

Query: 257 CQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKW 316
           CQ GPGAIDWY  L PL+ HA+TKG++RVKLHRELAE+L+++L+ RG SVIP GE++G+W
Sbjct: 231 CQNGPGAIDWY-NLHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQW 289

Query: 317 KGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ 376
           KGL + EKD+EIVWPPMVIIMNTRLDKD+NDKW GMGNQELLEYF  Y A+RARHSYGPQ
Sbjct: 290 KGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQ 349

Query: 377 GHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMAL 436
           GHRGMSVL+FESSA GYLEAERLH+  AE G DR +W    +R +F +GG RQLYGF+A 
Sbjct: 350 GHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAW--GQKRSMF-SGGVRQLYGFLAT 406

Query: 437 KEDLDVFNQHCHGSSFSPLSL 457
           K+DLD+FNQH  G +     L
Sbjct: 407 KQDLDIFNQHSQGKTRLKFEL 427

Required for post-transcriptional gene silencing and natural virus resistance. May bind nucleic acids and is essential for the biogenesis of trans-acting siRNAs but is not required for silencing induced by IR-PTGS. Involved in the juvenile-to-adult transition regulation. In case of begomoviruses infection, it is targeted by the viral protein V2 leading to suppression of post-transcriptional gene silencing.
Arabidopsis thaliana (taxid: 3702)

>sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/444 (53%), Positives = 300/444 (67%), Gaps = 37/444 (8%)

Query: 16  SNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGS 75
           SN+S K K     S   V+ ++  V DI L+S Q++G WEVY RK KNK GS   K +  
Sbjct: 11  SNSSEKQK---ASSTPTVEEINRGVGDIGLNSEQNEG-WEVYARKPKNKGGSSAGKQWAP 66

Query: 76  QN--------SNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQ 127
           QN         N KAWGH D  +K G R N  SGR     W+T +   K+      ARP 
Sbjct: 67  QNPSPKAWGNQNTKAWGHPDVGKKSGTRNNAGSGRGSGNNWSTPSDPQKL------ARPH 120

Query: 128 LTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVED 187
           L +         +   + P L++GW+W SR  S         H K++  +     D+   
Sbjct: 121 LYD-----GGFPSSAPVPPALKNGWDWSSRVAS--------AHPKDNSQVAAAADDDKAS 167

Query: 188 DYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINE 247
           ++D E D++ +  D+SDD+L SD+FDSD  + S++TRKK+ WF + F SL+SLTV EINE
Sbjct: 168 EHDAE-DNELDFLDESDDDLHSDDFDSDVGEMSYETRKKNPWFNQLFHSLDSLTVTEINE 226

Query: 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVI 307
           P RQWHCPAC+GGPGAI+W+ GLQ LMTHAKTKG  RVK+HRELAELL+E+LR+RGTSV+
Sbjct: 227 PERQWHCPACKGGPGAIEWFTGLQSLMTHAKTKGL-RVKIHRELAELLEEDLRQRGTSVV 285

Query: 308 PAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV 367
           P GEV+G+W G++   KD EIVWPPMVIIMNTRLDKDENDKW GMGNQELLEYF  YAAV
Sbjct: 286 PPGEVYGRWGGMEF--KDKEIVWPPMVIIMNTRLDKDENDKWIGMGNQELLEYFSSYAAV 343

Query: 368 RARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGK 427
           +ARHSYGPQGHRGMS+LIFE+SA GY+EA+RL +HF+E G +RD+W    R   F+ GGK
Sbjct: 344 KARHSYGPQGHRGMSLLIFEASAVGYIEADRLSEHFSENGRNRDAW--ERRSARFYPGGK 401

Query: 428 RQLYGFMALKEDLDVFNQHCHGSS 451
           R LYG+MA K+D+D FNQH  G S
Sbjct: 402 RLLYGYMADKKDIDNFNQHSAGKS 425

Required for post-transcriptional gene silencing and natural virus resistance.

Solanum lycopersicum (taxid: 4081)

>sp|A1Y2B7|SGS3_MAIZE Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/322 (60%), Positives = 242/322 (75%), Gaps = 15/322 (4%)

Query: 133 PETNNMATQTGIRPPLEHGWNWQSR---AGSTIFKHSEDGHDKESGNLDEVHKDNVEDDY 189
           P   +  ++  + PPL +GW WQSR   +GS + K         SG++ EV  +NV+ + 
Sbjct: 81  PRPPSQTSRPVLAPPLANGWQWQSRPRPSGSEVKKDDAPP----SGSVPEV--ENVDGNN 134

Query: 190 DDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPA 249
             + DDD +     D     D   SD S+KS +TRK ++WFK+FFE L +L++E+INE  
Sbjct: 135 TSDDDDDDDDDLSDDISDDYD---SDASEKSFETRKTNKWFKEFFEVLNTLSLEQINEQT 191

Query: 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPA 309
           RQWHCPAC+ GPGAIDWY+GLQPL++HA+TKGS RVKLHRELA LL+EEL RRGTSV+PA
Sbjct: 192 RQWHCPACKNGPGAIDWYKGLQPLVSHARTKGSTRVKLHRELAALLEEELSRRGTSVLPA 251

Query: 310 GEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRA 369
           GE FGKWKGL+++  D EIVWPPMVI+MNT L+KDE+DKW GMGNQELL+YF  Y A +A
Sbjct: 252 GEQFGKWKGLQES-TDREIVWPPMVIVMNTFLEKDEDDKWKGMGNQELLDYFGEYEASKA 310

Query: 370 RHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQ 429
           RH+YGP GHRGMSVLIFESSA GY+EAERLHKHF  QGTDR+SW+   R+V F  GGKRQ
Sbjct: 311 RHAYGPSGHRGMSVLIFESSAVGYMEAERLHKHFVNQGTDRNSWH--LRKVRFVPGGKRQ 368

Query: 430 LYGFMALKEDLDVFNQHCHGSS 451
           LYGF+A KED++ FN+HCHG S
Sbjct: 369 LYGFLANKEDMEAFNKHCHGKS 390

Required for the biogenesis of miRNAs and trans-acting siRNAs and essential for the specification of adaxial/abaxial organ polarity. May be involved in natural virus resistance.

Zea mays (taxid: 4577)

>sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1

 Score =  343 bits (880), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/343 (55%), Positives = 245/343 (71%), Gaps = 11/343 (3%)

Query: 109 TTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSED 168
           T V    + PA R   RP   N   E    A    +  PL +GW W +R+          
Sbjct: 71  TLVRHSDRRPA-RGTPRPPPQNRSIEAELQAPHGVVTAPLANGWQWGARSCPP------- 122

Query: 169 GHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSR 228
           G + + G L  +   + E D  +  D   + +DD   + LSD++DSD S+KS +TRK  +
Sbjct: 123 GTESKEGGLP-LSGCDPETDNAEGYDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNHK 181

Query: 229 WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLH 288
            FK FFE LE+L+VE++NEP RQWHCPAC+ GPGAIDWY+GLQPLMTHAKTKGS +VK H
Sbjct: 182 LFKGFFEVLEALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKRH 241

Query: 289 RELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDK 348
           RELA LL+EEL RRGTSV+P+GE F KWKGL+++  D EIVWPPMV++MNT L++DE+DK
Sbjct: 242 RELASLLEEELSRRGTSVVPSGEQFRKWKGLRES-TDREIVWPPMVVVMNTVLEQDEDDK 300

Query: 349 WTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGT 408
           W GMGNQEL++YF  YAA +ARH+YGP GHRGMSVLIF+SSA GY+EAERLH HF  Q T
Sbjct: 301 WKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRT 360

Query: 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
           DR++WN+++ +V F  GGKRQLYGF+A K+D++ FN+HCHG S
Sbjct: 361 DRNTWNSAH-KVTFLPGGKRQLYGFLATKDDMETFNRHCHGKS 402

Required for post-transcriptional gene silencing and natural virus resistance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZIW7|SGS3_ORYSI Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1

 Score =  338 bits (867), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 190/343 (55%), Positives = 244/343 (71%), Gaps = 11/343 (3%)

Query: 109 TTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSED 168
           T V    + PA R   RP   N        A +  +  PL +GW W +R+          
Sbjct: 71  TLVRHSDRRPA-RGTPRPPPQNRSTGAELQAPRGVVTAPLANGWQWGARSCPP------- 122

Query: 169 GHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSR 228
           G + + G L  +   + E D  +  D   + +DD   + LSD++DSD S+KS +TRK  +
Sbjct: 123 GTESKEGGLP-LSGCDPETDNAEGDDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNHK 181

Query: 229 WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLH 288
            FK FFE L++L+VE++NEP RQWHCPAC+ GPGAIDWY+GLQPLMTHAKTKGS +VK H
Sbjct: 182 LFKGFFEVLDALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKRH 241

Query: 289 RELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDK 348
           RELA LL+EEL RRGTSV+P+GE F KWKGL++   D EIVWPPMV++MNT L++DE+DK
Sbjct: 242 RELASLLEEELSRRGTSVVPSGEQFRKWKGLREG-TDREIVWPPMVVVMNTVLEQDEDDK 300

Query: 349 WTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGT 408
           W GMGNQEL++YF  YAA +ARH+YGP GHRGMSVLIF+SSA GY+EAERLH HF  Q T
Sbjct: 301 WKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRT 360

Query: 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
           DR++WN+++ +V F  GGKRQLYGF+A K+D++ FN+HCHG S
Sbjct: 361 DRNTWNSAH-KVTFLPGGKRQLYGFLATKDDMETFNRHCHGKS 402

Required for post-transcriptional gene silencing and natural virus resistance.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
225463205	718	PREDICTED: protein SUPPRESSOR OF GENE SI	0.942	0.619	0.682	1e-158
147765658	1849	hypothetical protein VITISV_043511 [Viti	0.942	0.240	0.682	1e-158
255553943	634	conserved hypothetical protein [Ricinus	0.917	0.682	0.663	1e-154
356508892	628	PREDICTED: protein SUPPRESSOR OF GENE SI	0.883	0.664	0.642	1e-152
225030812	642	reduced leaflet 1 [Lotus japonicus]	0.921	0.677	0.604	1e-148
356516448	638	PREDICTED: protein SUPPRESSOR OF GENE SI	0.921	0.681	0.627	1e-147
449459200	650	PREDICTED: protein SUPPRESSOR OF GENE SI	0.953	0.692	0.631	1e-144
356512916	645	PREDICTED: protein SUPPRESSOR OF GENE SI	0.917	0.671	0.620	1e-142
357464867	644	Protein SUPPRESSOR OF GENE SILENCING-lik	0.923	0.677	0.590	1e-138
357464863	759	Protein SUPPRESSOR OF GENE SILENCING-lik	0.921	0.573	0.560	1e-127

>gi|225463205|ref|XP_002267929.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Vitis vinifera]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 309/453 (68%), Positives = 358/453 (79%), Gaps = 8/453 (1%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS R+GG   +AAG+SN S K ++ +EV N  V+ L+  VADISLDSAQD G WEVY RK
Sbjct: 72  MSLRKGGGKQLAAGASNASPKSRHASEVPNVGVEPLNQGVADISLDSAQD-GEWEVYSRK 130

Query: 61  SKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAG 120
           SKN+AGS   KS+  QNS+ KAWG  D+ QK GMR N  SG+APA +W    ADS+ PAG
Sbjct: 131 SKNRAGSSAAKSWAPQNSSTKAWGQPDTAQKLGMRSNDGSGKAPANSWAAQTADSRKPAG 190

Query: 121 RVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEV 180
           R N RPQ  N   E + M  Q  I PPLEHGW W +R GS     SED   K+  N +  
Sbjct: 191 RGNVRPQSINRGLEGSYMGPQPVIPPPLEHGWKWNNRPGSI---KSEDVRGKDENNFNSY 247

Query: 181 --HKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLE 238
               ++ +++  D+ DDD +V+DDSDDELLSD+FDSDTSQKSH+TRKKS+WFK FFE L+
Sbjct: 248 SADIEDDKEEDIDDNDDDVDVADDSDDELLSDDFDSDTSQKSHETRKKSKWFKSFFEILD 307

Query: 239 SLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEE 298
           SLT+EEINEPARQWHCPACQGGPGAIDWYRGLQPL+THAKTKGSKRVKLHRELAELLDEE
Sbjct: 308 SLTIEEINEPARQWHCPACQGGPGAIDWYRGLQPLITHAKTKGSKRVKLHRELAELLDEE 367

Query: 299 LRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELL 358
           L RRGTSV+PAGE FGKWKGL ++ KDHEIVWPPMVIIMNTRL++D ++KW GMGNQELL
Sbjct: 368 LYRRGTSVVPAGEAFGKWKGLYESVKDHEIVWPPMVIIMNTRLEQDADEKWIGMGNQELL 427

Query: 359 EYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNR 418
           +YF  YAAV+ARHSYGPQGHRGMSVLIFESSA GYLEAERLHKHFAEQGTDR++W+   R
Sbjct: 428 DYFSSYAAVKARHSYGPQGHRGMSVLIFESSAIGYLEAERLHKHFAEQGTDREAWD--RR 485

Query: 419 RVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
           RV F+ GGKRQLYG+MA+KEDL +FNQH  G S
Sbjct: 486 RVPFYPGGKRQLYGYMAIKEDLTLFNQHSQGKS 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 309/453 (68%), Positives = 357/453 (78%), Gaps = 8/453 (1%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS R+GG   +AAG+SN S K ++ +EV N  V+ L+  VADISLDSAQD G WEVY RK
Sbjct: 309 MSLRKGGGKQLAAGASNASPKSRHASEVPNVGVEPLNQGVADISLDSAQD-GEWEVYSRK 367

Query: 61  SKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAG 120
           SKN+AGS   KS+  QNS+ KAWG  D+ QK GMR N  SG+APA +W    ADS+ PAG
Sbjct: 368 SKNRAGSSAAKSWAPQNSSTKAWGQPDTAQKLGMRSNDGSGKAPANSWAAQTADSRKPAG 427

Query: 121 RVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEV 180
           R N RPQ  N   E + M  Q  I PPLEHGW W +R GS     SED   K+  N +  
Sbjct: 428 RGNVRPQSINRGLEGSYMGPQPVIPPPLEHGWKWNNRPGSI---KSEDVRGKDENNFNSY 484

Query: 181 --HKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLE 238
               ++ +++  D+ DDD +V+DDSDDELLSD+FDSDTSQKSH+TRKKS+WFK FFE L+
Sbjct: 485 SADIEDDKEEDIDDNDDDVDVADDSDDELLSDDFDSDTSQKSHETRKKSKWFKSFFEILD 544

Query: 239 SLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEE 298
           SLT+EEINEPARQWHCPACQGGPGAIDWYRGLQPL+THAKTKGSKRVKLHRELAELLDEE
Sbjct: 545 SLTIEEINEPARQWHCPACQGGPGAIDWYRGLQPLITHAKTKGSKRVKLHRELAELLDEE 604

Query: 299 LRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELL 358
           L RRGTSV+PAGE FGKWKGL ++ KDHEIVWPPMVIIMNTRL++D + KW GMGNQELL
Sbjct: 605 LYRRGTSVVPAGEAFGKWKGLYESVKDHEIVWPPMVIIMNTRLEQDADXKWIGMGNQELL 664

Query: 359 EYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNR 418
           +YF  YAAV+ARHSYGPQGHRGMSVLIFESSA GYLEAERLHKHFAEQGTDR++W+   R
Sbjct: 665 DYFSSYAAVKARHSYGPQGHRGMSVLIFESSAIGYLEAERLHKHFAEQGTDREAWD--RR 722

Query: 419 RVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
           RV F+ GGKRQLYG+MA+KEDL +FNQH  G S
Sbjct: 723 RVPFYPGGKRQLYGYMAIKEDLTLFNQHSQGKS 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553943|ref|XP_002518012.1| conserved hypothetical protein [Ricinus communis] gi|223542994|gb|EEF44530.1| conserved hypothetical protein [Ricinus communis]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 300/452 (66%), Positives = 350/452 (77%), Gaps = 19/452 (4%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS+R  GK   A   +N+S KGKN + VS+ +++ LS SVADI+LD+ +DDG WEV  RK
Sbjct: 1   MSSRWDGKPSNAVSGNNSSSKGKNSSHVSSPKLEQLSQSVADINLDATEDDGQWEVIARK 60

Query: 61  SKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAG 120
           +KN+AGS   K +GSQNSN KAW H D+ QK GMR NG SGR    T  T         G
Sbjct: 61  TKNRAGSSAAKPWGSQNSNTKAWEHQDTVQKLGMRSNGGSGRMSGNTRPTQ------ATG 114

Query: 121 RVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEV 180
           R N RPQ +NW  E N +A Q  I PPLEHGWNWQSR G+   K          G++D+ 
Sbjct: 115 RGNTRPQSSNWGMENNYVAPQPTIPPPLEHGWNWQSRFGAAAPK----------GSVDDQ 164

Query: 181 HKD-NVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLES 239
            KD +  D  +D  +++    DD+DDE+LS++FDSD SQKSH+TRKKSRWFKKFF+SL+S
Sbjct: 165 RKDEDFVDQENDADEEEDEAIDDTDDEVLSEDFDSDASQKSHETRKKSRWFKKFFDSLDS 224

Query: 240 LTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEEL 299
           LT EEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGS RV+LHRELAELLDEEL
Sbjct: 225 LTAEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSNRVRLHRELAELLDEEL 284

Query: 300 RRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLE 359
            RRGTSVIPAGEVFGKWKGLK+ E D EIVWPPMVIIMNTRL++DENDKWTGMGNQELL+
Sbjct: 285 HRRGTSVIPAGEVFGKWKGLKEEESDREIVWPPMVIIMNTRLEQDENDKWTGMGNQELLD 344

Query: 360 YFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRR 419
           YF  YAA +ARHSYGPQGHRGMS+L+FESS  GYLEAERLHKHF +QGTDR++W+   RR
Sbjct: 345 YFNGYAATKARHSYGPQGHRGMSLLVFESSPRGYLEAERLHKHFVDQGTDRNAWD--RRR 402

Query: 420 VLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
           VLF+ GGKRQLYG+MA+KEDL++FNQH  G S
Sbjct: 403 VLFYPGGKRQLYGYMAVKEDLEIFNQHSQGRS 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508892|ref|XP_003523187.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/436 (64%), Positives = 338/436 (77%), Gaps = 19/436 (4%)

Query: 21  KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGS--QNS 78
           KGK+++E    +V+ L+  +AD  L+S QDDG WEVY RKSKNKAGS   K +G    NS
Sbjct: 3   KGKSISE-PQPKVEQLTQGIADTKLNSEQDDGEWEVYARKSKNKAGSSAAKPWGPPVHNS 61

Query: 79  NYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNM 138
           N +AWG+ +  QKPG+R +G  GR+    W T NA+ + PAGR N RPQL     E+N +
Sbjct: 62  NPRAWGNAEMVQKPGIRSHGGVGRSSGNPWQTPNANFRRPAGRGNGRPQLGTSGYESNYV 121

Query: 139 ATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDY---DDEKDD 195
                IRPPLEHGWNWQSR G+            +S   DE+  ++++ +Y   DD +++
Sbjct: 122 TPNPVIRPPLEHGWNWQSRPGAM-----------QSNVRDEISPEDLQKNYGVDDDGEEE 170

Query: 196 DSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCP 255
           +S+  +D+DD+L+SD+ DSD SQKSH+TRKKS+W+KKFFE L+ LTVE+INEP RQWHCP
Sbjct: 171 ESDDLEDTDDDLMSDDDDSDASQKSHETRKKSKWYKKFFEILDGLTVEQINEPERQWHCP 230

Query: 256 ACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGK 315
           ACQGGPGAIDWYRGLQPL+THAKTKGSKRVK+HRELA LLDEELRRRGTSVIPAGEVFGK
Sbjct: 231 ACQGGPGAIDWYRGLQPLVTHAKTKGSKRVKIHRELAILLDEELRRRGTSVIPAGEVFGK 290

Query: 316 WKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGP 375
           WKGLK+ EKDHEIVWPPMV+I NT+L++DENDKW GMGNQELL+YF  YAA +ARHSYGP
Sbjct: 291 WKGLKEEEKDHEIVWPPMVVIQNTKLEQDENDKWIGMGNQELLDYFSTYAAAKARHSYGP 350

Query: 376 QGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMA 435
           QGHRGMSVLIFE+SA GYLEAERLHKHFAEQGTD+D+W   NR +L+  GG RQLYG+MA
Sbjct: 351 QGHRGMSVLIFEASASGYLEAERLHKHFAEQGTDKDAW--FNRPILYLPGGNRQLYGYMA 408

Query: 436 LKEDLDVFNQHCHGSS 451
            KEDLD FN+H  G S
Sbjct: 409 TKEDLDFFNRHSQGKS 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225030812|gb|ACN79519.1| reduced leaflet 1 [Lotus japonicus]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 281/465 (60%), Positives = 347/465 (74%), Gaps = 30/465 (6%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS+RRGG S           KGK + E S++Q++ L+  VAD +LD  QDDG WEVY +K
Sbjct: 1   MSSRRGGVS-----------KGKTIAE-SHAQIEQLTQGVADTNLDPGQDDGQWEVYGKK 48

Query: 61  SKNKAGSGTTKSFGSQ--NSNYKAWGHLDSTQKPGMRG-NGSSGRAPAKTWTTVNADSKI 117
           SKN+AGS   K +GSQ  NSN +AWG+ +  QKPGM+   G +GRA    W T NA+ + 
Sbjct: 49  SKNRAGSSAAKPWGSQAHNSNPRAWGNTNMAQKPGMQNLGGGAGRASGNPWQTQNANLRR 108

Query: 118 PAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNL 177
           PAGR N  PQ+ +   +  N+ +   IRPPLEHGWNWQSR GS            +S   
Sbjct: 109 PAGRGNGGPQVPSTGYQNYNVTSNPLIRPPLEHGWNWQSRTGSM-----------QSNVR 157

Query: 178 DEVHKDNVEDDYD---DEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFF 234
           +E   +++E + D   D+++++ ++ +DSDD+LLSD  DSD SQKSH+TRKKSRWF++FF
Sbjct: 158 NEFPPEDLERNNDVDDDDEEEEEDLLEDSDDDLLSDGDDSDASQKSHETRKKSRWFREFF 217

Query: 235 ESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAEL 294
           E L+ LT+E+IN+P RQWHC ACQGGPGAIDW+RGLQPLM HAKTKGSKRVK+HRELA L
Sbjct: 218 EILDGLTIEQINDPERQWHCAACQGGPGAIDWFRGLQPLMAHAKTKGSKRVKIHRELAVL 277

Query: 295 LDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGN 354
           LDEEL+RRGTSVIPAGE FGKWKGLK+ EKDHEIVWPPMV+I NT+L++DENDKW GMGN
Sbjct: 278 LDEELQRRGTSVIPAGEAFGKWKGLKNEEKDHEIVWPPMVVIQNTKLEQDENDKWIGMGN 337

Query: 355 QELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWN 414
           QELL+ F  YAAVRARH+YGPQGHRGMS+LIFE+SA GYLEAERLHKHF+EQGTD+++W 
Sbjct: 338 QELLDSFSTYAAVRARHAYGPQGHRGMSILIFEASASGYLEAERLHKHFSEQGTDKNAW- 396

Query: 415 NSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSLSL 459
              RR LF  GG RQL+G+MA KEDLD+FN+HC   S S L   +
Sbjct: 397 FGGRRSLFLPGGNRQLFGYMATKEDLDIFNKHCPVKSSSRLKYDM 441

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516448|ref|XP_003526906.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/456 (62%), Positives = 350/456 (76%), Gaps = 21/456 (4%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS++RGG  P+   +++ S KGK+++E ++ +V+ L+  +AD  L+S QDDG WEVY RK
Sbjct: 1   MSSKRGGGRPVTVANNDMS-KGKSISE-AHPKVEQLTQGIADTKLNSGQDDGEWEVYARK 58

Query: 61  SKNKAGSGTTKSFG--SQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIP 118
           SKNKAGS   K +   + NSN +AWG+ +  QKPG+RG+G  GR+    W T NA+ + P
Sbjct: 59  SKNKAGSSAAKPWAPPAHNSNPRAWGNAEMAQKPGIRGHGGLGRSSGNPWQTQNANFRRP 118

Query: 119 AGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLD 178
           AGR N RPQL     E+N +     IRPPLEHGWNWQSR G+            +S   D
Sbjct: 119 AGRGNGRPQLATSGYESNYVPN-PAIRPPLEHGWNWQSRPGAL-----------QSNARD 166

Query: 179 EVHKDNVEDDYDDEKDDDSNVS---DDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFE 235
           E+  ++++ + D + DD    S   +D+DD+L+SD++DSD SQKSH+TRKK +WFKKFFE
Sbjct: 167 EISPEDLQKNDDVDDDDGEEDSDAFEDTDDDLMSDDYDSDASQKSHETRKKIKWFKKFFE 226

Query: 236 SLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELL 295
            L+ LTVE+INEP RQWHCPACQGGPGAIDWYRGLQPL+THAKTKGSKRVK+HRELA LL
Sbjct: 227 ILDGLTVEQINEPERQWHCPACQGGPGAIDWYRGLQPLVTHAKTKGSKRVKIHRELAILL 286

Query: 296 DEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQ 355
           DEELRRRGTSVIPAGEVFGKWKGLK+ EKDH+IVWPPMV+I NT+L++DENDKW GMGNQ
Sbjct: 287 DEELRRRGTSVIPAGEVFGKWKGLKEEEKDHDIVWPPMVVIQNTKLEQDENDKWIGMGNQ 346

Query: 356 ELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNN 415
           ELL+YF  Y AVRARHSYGPQGHRGMSVLIFE+SA GYLEAERLHKHFAEQGTD+DSW  
Sbjct: 347 ELLDYFSTYDAVRARHSYGPQGHRGMSVLIFEASASGYLEAERLHKHFAEQGTDKDSW-- 404

Query: 416 SNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
            +R +L+  GG RQLYG+MA KED+D FN+H  G S
Sbjct: 405 FSRPILYLPGGNRQLYGYMATKEDMDFFNRHSQGKS 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459200|ref|XP_004147334.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Cucumis sativus] gi|449508711|ref|XP_004163389.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Cucumis sativus]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 290/459 (63%), Positives = 348/459 (75%), Gaps = 9/459 (1%)

Query: 1   MSARRG-GKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVR 59
           MS+ +G GK+  ++ ++  S KG NV+  S +  DHL   VAD+SL+  Q DG WEVY +
Sbjct: 1   MSSNKGRGKTFNSSSNNERSPKGNNVSGTSTTTPDHLKQDVADVSLEPGQADGDWEVYAK 60

Query: 60  KSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPA 119
           KS+NKAG+  +K +G+QNS+ K+      T +  +R  G  G+ P K W    +D++  A
Sbjct: 61  KSRNKAGANASKQWGAQNSSPKS----TETAQTSLRNGGGRGKVPGKNWQPQYSDARRTA 116

Query: 120 GRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDG-HDKESGNLD 178
           GR NA  Q  +  P+ N   T   IRPPLEHGWNWQSRAGS+  +  EDG H  E  +  
Sbjct: 117 GRGNAWSQ--SRAPDVNYTGTPAVIRPPLEHGWNWQSRAGSSQSRVLEDGQHIDEHNSNS 174

Query: 179 EVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLE 238
            ++ +N  DD  D+ DDDS   +DSDD+ LSD+FDSD S+KS +TRKKSRWFKKFFE L+
Sbjct: 175 NLNDENERDDNVDDNDDDSEDLEDSDDDALSDDFDSDASEKSFETRKKSRWFKKFFEILD 234

Query: 239 SLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEE 298
           SLTV+EI+EPARQWHCPACQGGPGAIDW+RGLQPLM HA+TKGSKRVKLHRELAELLDEE
Sbjct: 235 SLTVDEISEPARQWHCPACQGGPGAIDWFRGLQPLMAHARTKGSKRVKLHRELAELLDEE 294

Query: 299 LRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELL 358
           LRR+G SVIPAGE+FGKWKGLKD +KDHEIVWPPMV+IMNT+L+KDENDKW GMGNQEL+
Sbjct: 295 LRRKGASVIPAGELFGKWKGLKDGDKDHEIVWPPMVVIMNTKLEKDENDKWIGMGNQELV 354

Query: 359 EYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNR 418
           EYF LY  V+ARHSYGPQGHRGMSVLIFE SA GYL+AERLHKHF EQ TDRD+WN + R
Sbjct: 355 EYFSLYLPVKARHSYGPQGHRGMSVLIFEPSAKGYLDAERLHKHFIEQRTDRDAWNRAGR 414

Query: 419 RVLFHAGGKRQLYGFMALKEDLDVFNQHCHGSSFSPLSL 457
             LF+ GGKRQLYGFMAL+EDLD+FNQH  G S     L
Sbjct: 415 N-LFYPGGKRQLYGFMALQEDLDIFNQHMQGKSKMKFEL 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512916|ref|XP_003525160.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/445 (62%), Positives = 341/445 (76%), Gaps = 12/445 (2%)

Query: 13  AGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKS 72
           A   ++S KGKNV E S  +++ L+  VAD++++S QDDG W VY +KSKN+A S T K 
Sbjct: 2   ADIGDSSSKGKNVLE-SLPKIEQLTQGVADVNIESGQDDGEWVVYAKKSKNRARSTTVKP 60

Query: 73  FGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPA--KTWTTVNADSKIPAGRVNARPQLTN 130
           +     N +  G+     KP  R +G  GRA      W + NA+ K PAGR N RPQLT 
Sbjct: 61  WSPPVHNSRPTGNTKMAHKPVTRNDGGVGRASGSGNPWQSQNANFKRPAGRGNGRPQLTA 120

Query: 131 WVPET-NNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDE---VHKDNVE 186
              E+ NN+ +   IRPPLEHGWNWQS +GS   K  +D   K  G + E   +  D+V+
Sbjct: 121 SESESSNNVTSNPVIRPPLEHGWNWQSISGSKQSKSVDDSLVK--GEITEESPMKNDSVD 178

Query: 187 DDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEIN 246
           D+ D+E+  D+   +D+DD+L+SD++DSDTSQKSH+TRKKS+WFK FFE+L+ L++E+IN
Sbjct: 179 DEGDEEEGFDA--MEDTDDDLMSDDYDSDTSQKSHETRKKSKWFKDFFENLDGLSIEKIN 236

Query: 247 EPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSV 306
           EP RQWHC AC+GGPGAIDWYRGLQPL+THAKTKGSKRVK+HRE AELL+EELR+RG++V
Sbjct: 237 EPERQWHCTACRGGPGAIDWYRGLQPLITHAKTKGSKRVKIHREFAELLEEELRKRGSAV 296

Query: 307 IPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA 366
           IP GEVFGKWKGLKD EKDHEIVWPPMV+I NTRL++DENDKW GMGNQELL YF  Y A
Sbjct: 297 IPPGEVFGKWKGLKDEEKDHEIVWPPMVVIQNTRLEQDENDKWLGMGNQELLNYFSAYDA 356

Query: 367 VRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGG 426
           V+ARH+YGPQGHRG+SVLIFE+SA GYLEAERLHKHFAEQGTDRD+W + +RR LF  GG
Sbjct: 357 VKARHAYGPQGHRGLSVLIFEASAIGYLEAERLHKHFAEQGTDRDAWFSHHRR-LFLPGG 415

Query: 427 KRQLYGFMALKEDLDVFNQHCHGSS 451
           +RQLYG+MA+KEDLD FN+HC G S
Sbjct: 416 RRQLYGYMAIKEDLDFFNRHCQGKS 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464867|ref|XP_003602715.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] gi|355491763|gb|AES72966.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula]

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/459 (59%), Positives = 340/459 (74%), Gaps = 23/459 (5%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS+RRGG+   AAG+ +   KGK V++  + + + L+  +AD++L S QDDG WE Y +K
Sbjct: 1   MSSRRGGRPFTAAGNDDFQSKGKGVSQF-DPKTEQLAQGIADVNLGSGQDDGPWETYSKK 59

Query: 61  SKNKAG-SGTTKSFG--SQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKI 117
           SKN+ G SG  K  G  +  SN +AWG+ D  QK G+  N  +GRA    W T NA    
Sbjct: 60  SKNRGGGSGAAKQRGPPAHGSNPRAWGNADVAQKQGVWNNSGAGRAAGNPWQTPNAGYMR 119

Query: 118 PAGRVNARPQLTNWVPETN----NMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKE 173
           PAGR N RPQ     P T     N+ +   I PPL+ GWNW+S          E      
Sbjct: 120 PAGRGNGRPQ-----PATGGYGYNVTSNPIIPPPLQGGWNWKSTHARNEIVPEE------ 168

Query: 174 SGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKF 233
               ++ +    +DD ++E++DD +  +D+DD+L+SDE+DSD SQKSH+TRKKS+WFKKF
Sbjct: 169 ---FEQKNDGEEDDDDEEEEEDDCDDLEDTDDDLMSDEYDSDASQKSHETRKKSKWFKKF 225

Query: 234 FESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAE 293
           F++L++LT+++INEP RQWHCPACQGGPGAIDWYRGLQPLM HAKTKGSKRVK+HRELA 
Sbjct: 226 FQNLDNLTIDQINEPERQWHCPACQGGPGAIDWYRGLQPLMNHAKTKGSKRVKVHRELAV 285

Query: 294 LLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMG 353
           LLDEELRRRGT+V+PAGE FGKWKGLK+ EKDHEIVWPPMV+I NT+L++DENDKWTGMG
Sbjct: 286 LLDEELRRRGTTVVPAGEAFGKWKGLKEEEKDHEIVWPPMVMIQNTQLEQDENDKWTGMG 345

Query: 354 NQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSW 413
           NQELL+YF  YAAVRARHSYGPQGHRGMSVL+FE+SA G+LEAERL KHFAEQGT+R++W
Sbjct: 346 NQELLDYFSSYAAVRARHSYGPQGHRGMSVLMFEASASGFLEAERLDKHFAEQGTNREAW 405

Query: 414 NNSNRRV-LFHAGGKRQLYGFMALKEDLDVFNQHCHGSS 451
            ++ RR  LF  GG RQL+G+MA KEDL+ FN+HC G +
Sbjct: 406 FSNRRRYNLFLPGGNRQLFGYMATKEDLEAFNRHCQGKT 444

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464863|ref|XP_003602713.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] gi|355491761|gb|AES72964.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/453 (56%), Positives = 313/453 (69%), Gaps = 18/453 (3%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS RR G+ P      N   +GK V++   +    + G +AD++L S QDDG WE Y +K
Sbjct: 1   MSYRRSGR-PFTV-VHNNDFRGKCVSQFYPNNEQLIQG-IADVNLGSGQDDGLWETYSKK 57

Query: 61  SKNKAGSGTTKSFG--SQNSNYKAWG-HLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKI 117
           SKN+ GS   K  G  +++SN +A G   D    PGMR    +GRA      T N     
Sbjct: 58  SKNRGGSIAAKQLGCSARSSNPRACGGDTDMAPMPGMRDYSGAGRAAGNLRRTPNTGYMR 117

Query: 118 PAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNL 177
           PAGR   RP         N  +    IRPP E   N +S        H  D    E    
Sbjct: 118 PAGRGYGRPHPGTGGYGYNGTSNPI-IRPPPEGVCNRKS-------MHVRDEIVPEEF-- 167

Query: 178 DEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESL 237
            E  + N ++D DDE DDD +  +D+D +L+SDE+DSD SQKSH+TRKKS+WF+KFFE L
Sbjct: 168 -EFEQKNDDEDDDDEGDDDCDDLEDTDYDLMSDEYDSDASQKSHETRKKSKWFRKFFEYL 226

Query: 238 ESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDE 297
           + +T+E+INEP R+WHCPACQ GPG+IDWY GL PLM HAKTKGSKRVK+HRELA LLDE
Sbjct: 227 DKMTIEQINEPEREWHCPACQSGPGSIDWYSGLLPLMNHAKTKGSKRVKVHRELAVLLDE 286

Query: 298 ELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQEL 357
           ELRRRG +V+PAGE FGKWKGLK+ EKDHEIVWPPMVII NT+L++DEN+KWTGMGNQEL
Sbjct: 287 ELRRRGGTVVPAGESFGKWKGLKEEEKDHEIVWPPMVIIQNTKLEEDENNKWTGMGNQEL 346

Query: 358 LEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSN 417
           L+YF  YAAVRARHSYGP GHRGMSVL+FE+SA GYLEAERLHKHF +QGT+R++W +++
Sbjct: 347 LDYFSSYAAVRARHSYGPNGHRGMSVLMFEASASGYLEAERLHKHFTDQGTNRETWFSNH 406

Query: 418 RRV-LFHAGGKRQLYGFMALKEDLDVFNQHCHG 449
           R   LF  GG RQL+G+MA K+DL+ FN+HC G
Sbjct: 407 RSSNLFLPGGNRQLFGYMAAKDDLEFFNRHCQG 439

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
TAIR|locus:2171716	625	SGS3 "SUPPRESSOR OF GENE SILEN	0.862	0.651	0.488	1.1e-96

TAIR|locus:2171716 SGS3 "SUPPRESSOR OF GENE SILENCING 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 208/426 (48%), Positives = 256/426 (60%)

Query:    21 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNY 80
             K KNV      +V+ L   +A   L S+QDDGG E  V   KNK   G T      + N 
Sbjct:    10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGG-EWEVISKKNKNKPGNTSGKTWVSQNS 68

Query:    81 KAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMAT 140
                      Q+ G RG+  SGR    +    N + +     ++ R +  +   + N +A 
Sbjct:    69 NP-PRAWGGQQQG-RGSNVSGRGNNVSGRG-NGNGRGIQANISGRGRALSRKYDNNFVAP 125

Query:   141 QTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHXXXXXXXXXXXXXXXXXXX 200
                 RPPLE GWNWQ+R GS      ++  D E    D+V                    
Sbjct:   126 PPVSRPPLEGGWNWQARGGSAQHTAVQEFPDVE----DDVDNASEEENDSDALDDSDDDL 181

Query:   201 XXXXXXXXXXXXXXXTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGG 260
                             SQKSH +RK+++WFKKFF SL+SL++E+INEP RQWHCPACQ G
Sbjct:   182 ASDDYDSD-------VSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPACQNG 234

Query:   261 PGAIDWYRGLQPLMTHAKTKGSKRVKLHXXXXXXXXXXXXXXGTSVIPAGEVFGKWKGLK 320
             PGAIDWY  L PL+ HA+TKG++RVKLH              G SVIP GE++G+WKGL 
Sbjct:   235 PGAIDWYN-LHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQWKGLG 293

Query:   321 DTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRG 380
             + EKD+EIVWPPMVIIMNTRLDKD+NDKW GMGNQELLEYF  Y A+RARHSYGPQGHRG
Sbjct:   294 EDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRG 353

Query:   381 MSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDL 440
             MSVL+FESSA GYLEAERLH+  AE G DR +W    +R +F +GG RQLYGF+A K+DL
Sbjct:   354 MSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQ--KRSMF-SGGVRQLYGFLATKQDL 410

Query:   441 DVFNQH 446
             D+FNQH
Sbjct:   411 DIFNQH 416


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      472       400   0.00098  117 3  11 23  0.46    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  292 KB (2149 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.69u 0.20s 33.89t   Elapsed:  00:00:01
  Total cpu time:  33.69u 0.20s 33.89t   Elapsed:  00:00:01
  Start:  Tue May 21 06:49:29 2013   End:  Tue May 21 06:49:30 2013

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009616 "virus induced gene silencing" evidence=RCA;IMP

GO:0010050 "vegetative phase change" evidence=RCA;IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010025 "wax biosynthetic process" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LDX1	SGS3_ARATH	No assigned EC number	0.5532	0.8771	0.6624	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	472
cd12266	107	cd12266, RRM_like_XS, RNA recognition motif-like X	3e-38
pfam03468	116	pfam03468, XS, XS domain	2e-12
pfam03470	43	pfam03470, zf-XS, XS zinc finger domain	1e-06

>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants

 Score =  134 bits (339), Expect = 3e-38
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 6/113 (5%)

Query: 328 IVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFE 387
           IVWP M I+ NT   KD+  K  GMGN+ELLE    +   R +  YG QGH G +++ F 
Sbjct: 1   IVWPWMGILANTPTTKDDERKMEGMGNKELLERLRKFNPTRVKPLYGYQGHTGFAIVEFA 60

Query: 388 SSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDL 440
               G+ +A RL KHFA+ G  +  W           G KR+LYG++A ++D 
Sbjct: 61  KDWSGFRDALRLEKHFAKDGRGKKDWIG------KKGGRKRKLYGWLAREDDY 107

This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important. . Length = 107

>gnl|CDD|217578 pfam03468, XS, XS domain

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 328 IVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFE 387
            VWP M I++N   +K ++ +  G     L +    +  ++ +  +  +GH G +++ F 
Sbjct: 5   YVWPWMGILVNVPTEKKKDGRGVGESGATLRDRLSRFNPLKVKPLWNREGHTGFAIVKFA 64

Query: 388 SSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKED 439
               G+ +A R  KHF +QG  +  W     +         +LYG++A  +D
Sbjct: 65  KDWSGFRDALRFEKHFEKQGHGKKDWLARRGQ-------DSKLYGWVARADD 109

The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition. Length = 116

>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 10/46 (21%)

Query: 254 CPACQGGPGAIDWYRGLQPLMTHAKTKG-------SKRVKLHRELA 292
           CP C G       Y+  + L+ HA   G       +K    HR LA
Sbjct: 1   CPFCPGKKKQD--YK-YKDLLQHASGVGASSNRRSAKEKASHRALA 43

This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	472
PF03468	116	XS: XS domain; InterPro: IPR005380 The XS (rice ge	100.0
PF03470	43	zf-XS: XS zinc finger domain; InterPro: IPR005381	99.44
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	87.31
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	83.28

>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT

Probab=100.00  E-value=6.8e-46  Score=325.23  Aligned_cols=114  Identities=39%  Similarity=0.770  Sum_probs=85.4

Q ss_pred             CCceeeeCceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCchhhHHHHHHHHHH
Q 012025          324 KDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHF  403 (472)
Q Consensus       324 kDdliVWPWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~rLekhF  403 (472)
                      +||+|||||||||+||+|+++++|+++|+|+++|+++|+.|+|++|++||+++||+|+|||+|++||+||+||++||+||
T Consensus         1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F   80 (116)
T PF03468_consen    1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF   80 (116)
T ss_dssp             ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCChhhhhhhcccccccCCCcceeeeEecccccccccC
Q 012025          404 AEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFN  444 (472)
Q Consensus       404 e~qg~GRkDW~~~~r~~~~~pG~~~~LYGWlAradDyds~n  444 (472)
                      +.++|||+||.  +++.     .+++||||||++|||++-+
T Consensus        81 ~~~~~Gr~dW~--~~~~-----~~~~lYGw~A~~dD~~~~~  114 (116)
T PF03468_consen   81 EAQGHGRKDWE--RRRG-----GGSQLYGWVARADDYNSPG  114 (116)
T ss_dssp             HHTT-SHHHHT---SSS--------S-EEEE-BHHHHHSSS
T ss_pred             HHcCCCHHHHh--hccC-----CCCceeeeeCchhhccCCC
Confidence            99999999998  5443     4899999999999998744

SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.

>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO

Probab=99.44  E-value=3.1e-14  Score=106.42  Aligned_cols=36  Identities=42%  Similarity=0.775  Sum_probs=34.2

Q ss_pred             ccCCCCCCCCccccCCchHHhhhhcccC-------chhhhhHHHHH
Q 012025          254 CPACQGGPGAIDWYRGLQPLMTHAKTKG-------SKRVKLHRELA  292 (472)
Q Consensus       254 CP~C~gkkk~~D~Y~~lk~LLqHA~gvG-------ak~kalHrALa  292 (472)
                      ||||+++|++ | |+ |++|||||+|||       ++++++|||||
T Consensus         1 CP~C~~kkk~-~-Y~-~~~LlqHA~gvg~~~~~r~~k~ka~HrALa   43 (43)
T PF03470_consen    1 CPFCPGKKKQ-D-YK-YRELLQHASGVGASSSRRSAKEKANHRALA   43 (43)
T ss_pred             CCCCCCCCCc-c-ee-hhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence            9999999988 7 99 999999999999       79999999996

>PF14259 RRM_6: RNA recognition motif (a

Probab=87.31  E-value=2.7  Score=32.21  Aligned_cols=58  Identities=24%  Similarity=0.345  Sum_probs=41.9

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCCchhhHHHHHHHH
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAGGYLEAERLHK  401 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~rLek  401 (472)
                      +.|-|+|.         ..+.++|++.|..|+++ +++.+.+++|. +|+|+|+|. +-.....|+.+.+
T Consensus         1 v~i~nlp~---------~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~   60 (70)
T PF14259_consen    1 VYISNLPP---------STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN   60 (70)
T ss_dssp             EEEESSTT---------T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred             CEEeCCCC---------CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence            45777764         24578899999998765 68888887765 899999996 5666666666653

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>PF00076 RRM_1: RNA recognition motif

Probab=83.28  E-value=3.5  Score=30.75  Aligned_cols=55  Identities=18%  Similarity=0.304  Sum_probs=38.8

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCC-CcceEEEEeCCCchhhHHHHH
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAGGYLEAER  398 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~G-H~G~aVVeF~kdwsGF~nA~r  398 (472)
                      +.|-|+|.         .++.++|++.|+.|.++ .+....+..+ +.|+++|+|.+ ...-..|+.
T Consensus         1 l~v~nlp~---------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~   57 (70)
T PF00076_consen    1 LYVGNLPP---------DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE   57 (70)
T ss_dssp             EEEESETT---------TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred             cEEcCCCC---------cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence            35667764         24678999999999998 4556664444 58999999998 455555544

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	472
4e8u_A	172	Putative uncharacterized protein T8P19.180; XS dom	4e-40
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09

>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172

 Score =  141 bits (356), Expect = 4e-40
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 321 DTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFIL--YAAVRARHSYGPQGH 378
           D + D ++V+P   I++N    K ++ +  G    +L + +IL  +   R R  +   GH
Sbjct: 2   DCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGH 61

Query: 379 RGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKE 438
            G +++ F     G        K +   G  +  W   +       G K  LYG++A  +
Sbjct: 62  SGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKD-------GPKLGLYGWIARAD 114

Query: 439 DLDVFNQH 446
           D +  N  
Sbjct: 115 DYNGNNII 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 54/320 (16%), Positives = 89/320 (27%), Gaps = 91/320 (28%)

Query: 165 HSEDGH-DKESGNLDEVHKDNVEDDYDD-EKDDDSNVSDDSDDELLSD-EFDSDTSQKSH 221
           H    H D E+G     +KD +    D    + D     D    +LS  E D     K  
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 222 DTR----------KKSRWFKKFFES--------LESLTVEEINEPARQWHCPACQGGPGA 263
            +           K+    +KF E         L S    E  +P+        Q     
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-- 118

Query: 264 IDWYRGLQPLMTHAKTKGS-KRVKLHRELAELLDEELRRRGTSVI--PAGEVFGKW---- 316
              Y   Q        K +  R++ + +L + L  ELR     +I    G   GK     
Sbjct: 119 --LYNDNQVF-----AKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLG--SGKTWVAL 168

Query: 317 KGLKDTE----KDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHS 372
                 +     D +I W      +N +           +   + L Y       +   +
Sbjct: 169 DVCLSYKVQCKMDFKIFW------LNLKNCNSPETV---LEMLQKLLY-------QIDPN 212

Query: 373 YGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYG 432
           +  +     ++              +L  H         S     RR+L     +  L  
Sbjct: 213 WTSRSDHSSNI--------------KLRIH---------SIQAELRRLLKSKPYENCL-- 247

Query: 433 FMAL-----KEDLDVFNQHC 447
            + L      +  + FN  C
Sbjct: 248 -LVLLNVQNAKAWNAFNLSC 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	472
4e8u_A	172	Putative uncharacterized protein T8P19.180; XS dom	100.0
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	91.75
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	90.0
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	88.73
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	87.73
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	87.59
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	87.46
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	87.35
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	87.11
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	86.49
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	86.42
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	86.39
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	86.39
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	84.75
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	84.62
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	84.53
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	84.23
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	83.22
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	82.63
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	82.31
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	82.06
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	81.7
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	81.67
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	81.39
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	81.25
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	81.11

>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-46  Score=348.00  Aligned_cols=127  Identities=19%  Similarity=0.357  Sum_probs=117.5

Q ss_pred             CCCCceeeeCceEEEeecccccCCCCcccccChHHHHHHh--hccCcceeEeccCCCCCcceEEEEeCCCchhhHHHHHH
Q 012025          322 TEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYF--ILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERL  399 (472)
Q Consensus       322 ~~kDdliVWPWMGIIvNt~te~dddgk~~G~S~~eLkd~f--sgF~P~KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~rL  399 (472)
                      ++++++|||||||||+||+|+.++||+++|||+++|+++|  ++|+|++|+|||+++||+|+|||+|++||+||+||++|
T Consensus         3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f   82 (172)
T 4e8u_A            3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF   82 (172)
T ss_dssp             ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred             CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence            6789999999999999999988888999999999999977  89999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCChhhhhhhcccccccCCCcceeeeEecccccccc---cCccCCCCccccc
Q 012025          400 HKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDV---FNQHCHGSSFSPL  455 (472)
Q Consensus       400 ekhFe~qg~GRkDW~~~~r~~~~~pG~~~~LYGWlAradDyds---~n~hs~~k~~LK~  455 (472)
                      |+||+.++|||+||.  .++.     .+++|||||||+|||++   +.+|+++.++||-
T Consensus        83 ek~Fe~~~~GK~dW~--~~~~-----~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKT  134 (172)
T 4e8u_A           83 DKAYTVDGHGKKDWL--KKDG-----PKLGLYGWIARADDYNGNNIIGENLRKTGDLKT  134 (172)
T ss_dssp             HHHHHHTTCSHHHHT--CSSS-----CCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEE
T ss_pred             HHHHHHcCCCHHHHh--hCCC-----CCCceEEEecccccccCCChHHHHHHHcCCccc
Confidence            999999999999998  5544     48999999999999998   7789999999996

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.75  E-value=0.25  Score=40.34  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=43.8

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCCCchhhHHHHH
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER  398 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~r  398 (472)
                      -.+.|-|++..-         +.++|++.|+.|.++.|+.++.+.|. +|++.|+|...- --..|+.
T Consensus        16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~   73 (102)
T 1wez_A           16 HCVHMRGLPYRA---------TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHE-DAVAAMA   73 (102)
T ss_dssp             CEEEEESCCTTC---------CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSH-HHHHHHT
T ss_pred             CEEEEeCCCCCC---------CHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence            457788987533         56889999999999999999998775 899999998643 3444443

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.00  E-value=0.69  Score=36.78  Aligned_cols=49  Identities=16%  Similarity=0.384  Sum_probs=39.2

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS  389 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd  389 (472)
                      -.+.|-|++..         .+.++|++.|+.|.++ .++......+++|++.|+|..-
T Consensus        16 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~   65 (103)
T 2cq3_A           16 KRLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS   65 (103)
T ss_dssp             CEEEEESCCTT---------CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred             CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCH
Confidence            34668898752         3577899999999887 6778888888899999999873

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.73  E-value=0.81  Score=38.23  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=40.2

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESS  389 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~kd  389 (472)
                      ..+.|-|++..-         +.++|++.|+.|....|++++++.|. +|++.|+|...
T Consensus        17 ~~v~V~nLp~~~---------te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~   66 (109)
T 2dnn_A           17 LYVSVHGMPFSA---------MENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSP   66 (109)
T ss_dssp             HEEEEECCCSSC---------CHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSH
T ss_pred             CEEEEeCCCCCC---------CHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCH
Confidence            468899987533         46789999999977789999988875 89999999873

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.73  E-value=0.86  Score=37.35  Aligned_cols=47  Identities=13%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCC-CcceEEEEeCC
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQG-HRGMSVLIFES  388 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~G-H~G~aVVeF~k  388 (472)
                      .+.|-|++...         +.++|++.|..|..+.  |+.++.+.| .+|++.|+|..
T Consensus        17 ~l~V~nLp~~~---------t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~   66 (114)
T 2cpy_A           17 CAHITNIPFSI---------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN   66 (114)
T ss_dssp             EEEEESCCTTS---------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS
T ss_pred             EEEEeCcCCcC---------CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC
Confidence            35688987533         4678999999998875  899988877 48999999975

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.59  E-value=0.97  Score=35.90  Aligned_cols=48  Identities=10%  Similarity=0.095  Sum_probs=38.3

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS  389 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd  389 (472)
                      .+.|-|++..         .+.++|++.|+.|.++ .++......+++|++.|+|...
T Consensus        17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~   65 (103)
T 2cqi_A           17 TLYVGNLSRD---------VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH   65 (103)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSH
T ss_pred             EEEEeCCCcc---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCH
Confidence            4668888742         3578899999999987 4777887778899999999853

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=87.46  E-value=1  Score=36.47  Aligned_cols=58  Identities=14%  Similarity=0.126  Sum_probs=42.6

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCc----ceeEeccCCCC-CcceEEEEeCCCchhhHHHHHH
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQG-HRGMSVLIFESSAGGYLEAERL  399 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P----~KVr~lyg~~G-H~G~aVVeF~kdwsGF~nA~rL  399 (472)
                      ..+.|-|++..-         +.++|++.|+.|.+    ..|+.++++.| .+|++.|+|.. -..-..|+.+
T Consensus        12 ~~l~V~nLp~~~---------te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~   74 (107)
T 2lmi_A           12 FLIRAQGLPWSC---------TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEK   74 (107)
T ss_dssp             CEEEEECCCSSC---------CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTT
T ss_pred             cEEEEeCCCCCC---------CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh
Confidence            346788987533         45779999999887    57888888877 48999999975 4445555543

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=87.35  E-value=0.94  Score=39.12  Aligned_cols=49  Identities=18%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc--eeEeccCCCCC-cceEEEEeCCCc
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV--RARHSYGPQGH-RGMSVLIFESSA  390 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~--KVr~lyg~~GH-~G~aVVeF~kdw  390 (472)
                      .+.|-|++..-         +.++|++.|+.|..+  .|++++++.|. +|++.|+|...-
T Consensus        44 ~lfVgnLp~~~---------te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e   95 (126)
T 2hgm_A           44 FVRLRGLPFGC---------TKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQE   95 (126)
T ss_dssp             EEEEECCCTTC---------CHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTT
T ss_pred             EEEEeCCCCCC---------CHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHH
Confidence            46788987533         567899999999777  78999988874 899999998754

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.11  E-value=1.4  Score=34.21  Aligned_cols=57  Identities=14%  Similarity=0.248  Sum_probs=41.2

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCCCchhhHHHHH
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER  398 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~r  398 (472)
                      ..+.|-|++..         .+.++|++.|+.|....++.+.+..|. +|+|.|+|.. -..-..|+.
T Consensus        11 ~~l~v~nLp~~---------~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~   68 (91)
T 2dgw_A           11 HTVKLRGAPFN---------VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALK   68 (91)
T ss_dssp             CEEEEECCCSS---------CCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHH
T ss_pred             cEEEEECCCCC---------CCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHH
Confidence            35678898753         356789999999966788888886664 8999999985 333344443

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.49  E-value=1.3  Score=35.58  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=37.5

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCCC-cceEEEEeCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFES  388 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~GH-~G~aVVeF~k  388 (472)
                      ..+.|-|++..-         +.++|++.|+.|.++.  ++.++...|. +|++.|+|..
T Consensus        16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~   66 (104)
T 1wg5_A           16 GFVRLRGLPFGC---------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS   66 (104)
T ss_dssp             CEEEEESCCTTC---------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESS
T ss_pred             CEEEEeCCCCCC---------CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECC
Confidence            356788987532         4678999999999875  6777776664 8999999976

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.42  E-value=0.88  Score=38.94  Aligned_cols=50  Identities=14%  Similarity=0.260  Sum_probs=39.4

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-----eeEeccCCCCC-cceEEEEeCCCc
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-----RARHSYGPQGH-RGMSVLIFESSA  390 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-----KVr~lyg~~GH-~G~aVVeF~kdw  390 (472)
                      ..+.|-|++..-         +.++|++.|+.|.++     .|+.++...|. +|++.|+|...-
T Consensus        24 ~~v~V~nLp~~~---------te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~   79 (123)
T 2dha_A           24 VIVRMRGLPFTA---------TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE   79 (123)
T ss_dssp             CEEEECSCCTTC---------CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH
T ss_pred             CEEEEeCCCCCC---------CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHH
Confidence            467788987533         467899999999874     68888887775 899999998643

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=86.39  E-value=1.2  Score=36.87  Aligned_cols=57  Identities=12%  Similarity=0.127  Sum_probs=42.1

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCc----ceeEeccCCCCC-cceEEEEeCCCchhhHHHHH
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFESSAGGYLEAER  398 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P----~KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~r  398 (472)
                      ..+.|-|++..-         +.++|++.|+.|..    ..|+.++++.|. +|++.|+|.. -..-..|+.
T Consensus        18 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~   79 (118)
T 2db1_A           18 YVVKLRGLPWSC---------SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALK   79 (118)
T ss_dssp             CEEEEESCCTTC---------CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGG
T ss_pred             cEEEEeCCCCCC---------CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHh
Confidence            356788987532         56789999999987    578888888875 8999999975 333444443

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=86.39  E-value=0.61  Score=40.82  Aligned_cols=48  Identities=19%  Similarity=0.361  Sum_probs=39.6

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFES  388 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~k  388 (472)
                      .++.|-|++..-         +.++|++.|+.|.++.|++++++.|. +|++.|+|..
T Consensus        47 ~~lfV~nLp~~~---------te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~   95 (139)
T 2hgn_A           47 HCVHMRGLPYKA---------TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFAT   95 (139)
T ss_dssp             CCEECCSCCTTC---------CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSH
T ss_pred             CEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCC
Confidence            356788987532         56889999999999999999998875 8999999974

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=84.75  E-value=2.1  Score=33.26  Aligned_cols=50  Identities=14%  Similarity=0.286  Sum_probs=38.4

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCCch
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAG  391 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kdws  391 (472)
                      .+.|-|++..         .+.++|++.|+.|.++ .++....+.|. +|++.|+|...-.
T Consensus        18 ~l~v~nlp~~---------~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~   69 (95)
T 2ywk_A           18 TVFVGNLEAR---------VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES   69 (95)
T ss_dssp             EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHH
T ss_pred             EEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHH
Confidence            4668898742         3567899999999887 57777777665 8999999987543

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=84.62  E-value=0.89  Score=37.41  Aligned_cols=48  Identities=19%  Similarity=0.418  Sum_probs=38.3

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA  390 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw  390 (472)
                      +.|-|++..         .+.++|++.|+.|.++ .|+++....++.|++.|+|..--
T Consensus         8 lfV~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~   56 (115)
T 4f25_A            8 IFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE   56 (115)
T ss_dssp             EEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHH
T ss_pred             EEECCCCCC---------CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHH
Confidence            557788642         3568899999999996 57888888888999999998743

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.53  E-value=1.9  Score=34.73  Aligned_cols=49  Identities=12%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcce---------eEeccCCC-CC-cceEEEEeCCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-GH-RGMSVLIFESS  389 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K---------Vr~lyg~~-GH-~G~aVVeF~kd  389 (472)
                      -.+.|-|++..         .+.++|++.|+.|.++.         ++.+..+. |. +|+|.|+|..-
T Consensus        16 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~   75 (113)
T 2cpe_A           16 SAIYVQGLNDS---------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP   75 (113)
T ss_dssp             CEEEEECCCTT---------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred             CEEEEcCCCCC---------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence            35678898742         35678999999999987         78887743 43 89999999864

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.23  E-value=1.8  Score=35.28  Aligned_cols=50  Identities=18%  Similarity=0.397  Sum_probs=39.2

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCch
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAG  391 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdws  391 (472)
                      .+.|-|++..         .+.++|++.|+.|.++ .++......+.+|++.|+|...-.
T Consensus        31 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~   81 (109)
T 2err_A           31 RLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD   81 (109)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHH
T ss_pred             EEEEECCCCc---------CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHH
Confidence            4567887642         3578899999999887 577777777789999999987543

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=83.22  E-value=2.3  Score=33.53  Aligned_cols=48  Identities=21%  Similarity=0.308  Sum_probs=36.0

Q ss_pred             CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025          331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA  390 (472)
Q Consensus       331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw  390 (472)
                      |+.+.|-|++..         .+.++|++.|+.|.++ .++...   ..+|++.|+|...-
T Consensus        11 ~~~l~V~~Lp~~---------~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~   59 (89)
T 3d2w_A           11 GSKVFVGRCTED---------MTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDK   59 (89)
T ss_dssp             CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred             CCEEEEeCCCCC---------CCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHH
Confidence            456778888652         3578899999999986 455555   37899999998743

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.63  E-value=2.8  Score=33.60  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS  389 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd  389 (472)
                      -.+.|-|++..         .+.++|++.|+.|.++....+.....+.|++.|+|...
T Consensus        23 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~   71 (109)
T 1x4a_A           23 CRIYVGNLPPD---------IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDP   71 (109)
T ss_dssp             SEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCH
T ss_pred             CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCH
Confidence            35668898742         35788999999999876444433444689999999764

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=82.31  E-value=2.7  Score=33.38  Aligned_cols=48  Identities=19%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS  389 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd  389 (472)
                      .+.|-|++..         .+.++|++.|..|.++ .++.+..+.|. .|++.|+|..-
T Consensus        31 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~   80 (107)
T 3ulh_A           31 KLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK   80 (107)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred             EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCH
Confidence            4678898642         3567899999999887 67788777775 89999999853

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.06  E-value=0.81  Score=37.48  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=37.3

Q ss_pred             ceEEEeeccccc--CCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCc
Q 012025          332 PMVIIMNTRLDK--DENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA  390 (472)
Q Consensus       332 WMGIIvNt~te~--dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdw  390 (472)
                      .+++|.|+....  .++..+.....++|++.|+.|.++.-..+... ...|++.|+|...-
T Consensus        16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~G~afV~f~~~~   75 (112)
T 2dit_A           16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-HPDGVASVSFRDPE   75 (112)
T ss_dssp             CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-CTTCEEEEECSCHH
T ss_pred             eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-CCCEEEEEEECCHH
Confidence            457888974322  12222333345789999999998753344433 36899999998653

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=81.70  E-value=3.2  Score=32.83  Aligned_cols=50  Identities=16%  Similarity=0.350  Sum_probs=37.8

Q ss_pred             CceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025          331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS  389 (472)
Q Consensus       331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd  389 (472)
                      +-.+.|-|++..         .+.++|++.|+.|.++ .++...++.|. +|++.|+|...
T Consensus        15 ~~~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~   66 (105)
T 2dnh_A           15 DRKLFVGMLNKQ---------QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH   66 (105)
T ss_dssp             CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSH
T ss_pred             CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCH
Confidence            345668898742         3567899999999886 56777776664 79999999873

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.67  E-value=2  Score=33.90  Aligned_cols=47  Identities=21%  Similarity=0.198  Sum_probs=36.8

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS  389 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kd  389 (472)
                      -.+.|-|++..         .+.++|++.|+.|.++.++.+++  .+.|++.|+|...
T Consensus        20 ~~l~V~nL~~~---------~t~~~l~~~F~~~G~v~~~~~~~--~~~g~afV~f~~~   66 (97)
T 2e5j_A           20 ADVYVGNLPRD---------ARVSDLKRALRELGSVPLRLTWQ--GPRRRAFLHYPDS   66 (97)
T ss_dssp             CEEEEECCCTT---------CCHHHHHHHHHHTTCCCSEEEEE--TTTTEEEEECSSH
T ss_pred             CEEEEeCCCCc---------CcHHHHHHHHHhcCCEEEEEEcC--CCCcEEEEEECCH
Confidence            35778898642         35788999999999988777764  5679999999864

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.39  E-value=2.9  Score=33.60  Aligned_cols=47  Identities=30%  Similarity=0.455  Sum_probs=36.8

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCC
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFES  388 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~k  388 (472)
                      .+.|-|++..         .+.++|++.|+.|.++ .++.+..+.|. +|++.|+|..
T Consensus        17 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~   65 (114)
T 2do0_A           17 TVFVANLDYK---------VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ   65 (114)
T ss_dssp             CEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESS
T ss_pred             EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECC
Confidence            4668898742         3578899999999886 56777777764 8999999986

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.25  E-value=3.3  Score=32.59  Aligned_cols=49  Identities=18%  Similarity=0.246  Sum_probs=37.2

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS  389 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd  389 (472)
                      -.+.|-|++..         .+.++|++.|+.|.++ .++....+.|. +|++.|+|...
T Consensus        18 ~~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~   68 (100)
T 2do4_A           18 HKLFISGLPFS---------CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENE   68 (100)
T ss_dssp             SCEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred             CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCH
Confidence            34668898752         3578899999999986 56777777554 79999999763

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.11  E-value=2.7  Score=33.44  Aligned_cols=49  Identities=18%  Similarity=0.235  Sum_probs=37.4

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCC--C-CcceEEEEeCCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--G-HRGMSVLIFESS  389 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~--G-H~G~aVVeF~kd  389 (472)
                      ..+.|-|++..         .+.++|++.|..|....|+.+..+.  | +.|++.|+|...
T Consensus        16 ~~l~V~nlp~~---------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~   67 (104)
T 1wi8_A           16 YTAFLGNLPYD---------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL   67 (104)
T ss_dssp             EEEEEESCCSS---------CCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSH
T ss_pred             CEEEEeCCCCc---------CCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCH
Confidence            46778898753         3578899999999866777777764  3 489999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	472
d1d7qa_	143	b.40.4.5 (A:) Translation initiation factor-1a, eI	0.003

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 152 WNWQSRAGSTIFKHSEDGHD--KESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLS 209
            ++Q      I K++ D     K  G L E  K N  D +    DD+    D  DD+   
Sbjct: 81  RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140

Query: 210 DE 211
           D+
Sbjct: 141 DD 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	472
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.99
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	93.74
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	91.02
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	90.77
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	89.35
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	89.17
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	88.65
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	87.98
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	87.98
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	87.48
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	85.82
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	85.59
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	84.45
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	84.31
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	83.96
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	83.16
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	82.56
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	82.5
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	81.51
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	80.66

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.017  Score=43.37  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=45.4

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCchhhHHHHHHH
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLH  400 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdwsGF~nA~rLe  400 (472)
                      ++.|-|+|.         ..+.++|++.|+.|.+++ ++.+.++.+.+++|.|+|.. -..-..|+.++
T Consensus         2 tv~V~nlp~---------~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~-~~~a~~Al~~~   60 (75)
T d2ghpa2           2 TVLVKNLPK---------SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITKT   60 (75)
T ss_dssp             EEEEEEECT---------TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTTT
T ss_pred             EEEEECCCC---------CCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcc-hHHhHHHHHhc
Confidence            477889864         246889999999999975 78888999999999999954 55556666553

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.033  Score=43.81  Aligned_cols=59  Identities=15%  Similarity=0.254  Sum_probs=46.3

Q ss_pred             CceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCC-cceEEEEeCCCchhhHHHHHH
Q 012025          331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAERL  399 (472)
Q Consensus       331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH-~G~aVVeF~kdwsGF~nA~rL  399 (472)
                      +.+|.|.|+|..-         +.++|++.|..|.++.|+.++...|. +|+|.|+|..--.-- .|+++
T Consensus        15 ~~~v~v~nLp~~~---------te~dl~~~F~~~~~~~v~~~~~~~g~~~G~afVeF~~~~~a~-~Al~~   74 (102)
T d1weza_          15 GHCVHMRGLPYRA---------TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAV-AAMAK   74 (102)
T ss_dssp             SCEEEEESCCTTC---------CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHH-HHHTT
T ss_pred             CCEEEEeCCCCcC---------CHHHHHHHHhccCcceeeeEEecCCcceEEEEEEECCHHHHH-HHHHc
Confidence            3468999998643         46789999999999999999998875 999999998765443 34444

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.2  Score=38.49  Aligned_cols=56  Identities=14%  Similarity=0.275  Sum_probs=42.4

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCchhhHHHH
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAE  397 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdwsGF~nA~  397 (472)
                      -.+.|-|++..-         +.++|++.|+.|.++. |+.+.+..+.+|++.|+|.. -..-..|+
T Consensus        12 ~~l~v~nLp~~~---------t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~-~~~a~~Ai   68 (93)
T d2cq3a1          12 KRLHVSNIPFRF---------RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN-SADADRAR   68 (93)
T ss_dssp             CEEEEESCCTTC---------CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESC-HHHHHHHH
T ss_pred             CEEEEECCCCCC---------CHHHHHHHHhhcceeeeccccccccCCcceeEEEECC-HHHHHHHH
Confidence            347799998533         4678999999999974 78888899999999999974 33333333

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.19  Score=38.23  Aligned_cols=47  Identities=19%  Similarity=0.427  Sum_probs=38.4

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCC
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS  389 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kd  389 (472)
                      +.|-|++..         .+.++|++.|+.|.++ .++......++.|+|.|+|.+.
T Consensus        11 l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~   58 (89)
T d1cvja2          11 IFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ   58 (89)
T ss_dssp             EEEESCCSS---------CCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCH
T ss_pred             EEEeCCCCC---------CCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCH
Confidence            568888753         3578899999999886 5788888888899999999764

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.35  Score=37.97  Aligned_cols=59  Identities=19%  Similarity=0.203  Sum_probs=45.1

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCC-C-CcceEEEEeCCCchhhHHHHHHHH
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSAGGYLEAERLHK  401 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~-G-H~G~aVVeF~kdwsGF~nA~rLek  401 (472)
                      ++.|-|++..         .+..+|++.|..|..++ |+.+.+.. | ++|++.|+|.. -..-..|++|..
T Consensus        20 tifV~nL~~~---------~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~-~e~a~~A~~l~g   81 (101)
T d2cq4a1          20 TVFCMQLAAR---------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLTG   81 (101)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHTT
T ss_pred             EEEEECCCCC---------CCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECC-HHHHHHHHHHCC
Confidence            4678898753         35678999999998874 88888765 4 58999999965 566777877654

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.13  Score=40.34  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCCC-cceEEEEeCCCchhhHHHHHHH
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFESSAGGYLEAERLH  400 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~GH-~G~aVVeF~kdwsGF~nA~rLe  400 (472)
                      |.|-|+|..-         +-++|++.|+.|.++.  +..+....+. +|++.|+|..--.- ..|+.|+
T Consensus        18 v~v~nLP~~~---------te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a-~~a~~~~   77 (104)
T d1wg5a_          18 VRLRGLPFGC---------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIA-EKALKKH   77 (104)
T ss_dssp             EEEESCCTTC---------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHH-HHHHTTT
T ss_pred             EEEeCCCCCC---------CHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHH-HHHHhhC
Confidence            4688998643         4678999999999875  4556566654 79999999976443 4455443

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.26  Score=38.20  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=37.3

Q ss_pred             ceEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCC--C-CcceEEEEeCC
Q 012025          332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--G-HRGMSVLIFES  388 (472)
Q Consensus       332 WMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~--G-H~G~aVVeF~k  388 (472)
                      -++.|-|++..         .+.++|++.|+.|.++.++.+..+.  | .+|++.|+|..
T Consensus        16 ~~v~V~nLp~~---------~te~~l~~~f~~~g~~~~~~~~~~~~~g~~~g~afV~f~~   66 (104)
T d1wi8a_          16 YTAFLGNLPYD---------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED   66 (104)
T ss_dssp             EEEEEESCCSS---------CCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESS
T ss_pred             CEEEEeCCCCc---------CCHHHHHHHHHHhccccceeeeeeccCCCcceeeeEEECC
Confidence            45778899753         3568899999999988888776543  4 47899999986

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.16  Score=40.48  Aligned_cols=60  Identities=22%  Similarity=0.344  Sum_probs=43.4

Q ss_pred             eCceEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCCC-cceEEEEeCCCchhhHHHHHH
Q 012025          330 WPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFESSAGGYLEAERL  399 (472)
Q Consensus       330 WPWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~GH-~G~aVVeF~kdwsGF~nA~rL  399 (472)
                      .+.++.|-|+|..-         +-++|++.|+.|+++.  +.+.+...|. +|++.|+|..-- ....|+.|
T Consensus        17 ~~~~i~v~nLp~~~---------t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e-~a~~al~~   79 (112)
T d1wela1          17 AGFCVYLKGLPFEA---------ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALCR   79 (112)
T ss_dssp             CCCEEEEECCCTTC---------CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHTS
T ss_pred             CCeEEEEecCCCcC---------cHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHH-HHHHHHHc
Confidence            34578889998633         4678999999999874  4567777776 899999998842 23444443

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.98  E-value=0.4  Score=35.46  Aligned_cols=47  Identities=19%  Similarity=0.443  Sum_probs=37.3

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCCC
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS  389 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~kd  389 (472)
                      +.|-|++.+         .+.++|++.|+.|.++ .++..+++.|+ +|++.|+|...
T Consensus         3 l~V~nLp~~---------~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~   51 (78)
T d1no8a_           3 LLVSNLDFG---------VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK   51 (78)
T ss_dssp             EEEESCCTT---------CCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCH
T ss_pred             EEEECCCCC---------CCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCH
Confidence            357787652         3578899999999886 67888888875 89999999964

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=0.4  Score=36.35  Aligned_cols=49  Identities=10%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCCcceEEEEeCCCc
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA  390 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH~G~aVVeF~kdw  390 (472)
                      ++.|-|++..         .+.++|++.|+.|+++ +++.+......+|++.|+|...-
T Consensus        10 tl~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~   59 (90)
T d2cqia1          10 TLYVGNLSRD---------VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHR   59 (90)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHH
T ss_pred             EEEEECCCCC---------CCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHH
Confidence            5678898753         3567899999999986 57778888888999999999543

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.72  Score=35.17  Aligned_cols=54  Identities=19%  Similarity=0.295  Sum_probs=40.2

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCchhhHHHH
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAE  397 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdwsGF~nA~  397 (472)
                      +.|-|++..         .+.++|++.|+.|.++....+.....++|++.|+|..--.- ..|+
T Consensus        17 l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a-~~Ai   70 (95)
T d1x4aa1          17 IYVGNLPPD---------IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDA-EDAV   70 (95)
T ss_dssp             EEEESCCTT---------CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHH-HHHH
T ss_pred             EEEECCCCC---------CCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHH-HHHH
Confidence            568899752         35788999999999987666666667789999999765442 3444

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.59  E-value=0.61  Score=34.71  Aligned_cols=49  Identities=22%  Similarity=0.484  Sum_probs=37.8

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCCC-cceEEEEeCCCc
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFESSA  390 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~GH-~G~aVVeF~kdw  390 (472)
                      ++.|-|+|..         .+.++|++.|+.|.++.  +...+...|. +|++.|+|..-.
T Consensus        11 ~l~v~nLp~~---------~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e   62 (86)
T d2cqpa1          11 IIKVQNMPFT---------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD   62 (86)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHH
T ss_pred             EEEEECCCCC---------CCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcH
Confidence            4668898753         35788999999999874  4667777765 899999998743

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.45  E-value=0.89  Score=35.44  Aligned_cols=48  Identities=21%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCc
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA  390 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdw  390 (472)
                      ++.|-|++..         .+.++|.+.|+.|+++. ++... ...+.|++.|+|..--
T Consensus         9 ~l~V~nLp~~---------~te~~l~~~F~~~G~v~~i~~~~-~~~~kG~afV~f~~~~   57 (114)
T d2f9da1           9 ILYIRNLPYK---------ITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDIF   57 (114)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEC-STTTTTEEEEEESSHH
T ss_pred             EEEEECCCCC---------CCHHHHHHHHhhcCCeEeecccc-cCCcCCeEEEEECCHH
Confidence            3678898742         36788999999999974 44443 3446899999997543

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.31  E-value=1  Score=33.84  Aligned_cols=47  Identities=17%  Similarity=0.183  Sum_probs=36.1

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCCCC-cceEEEEeCC
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFES  388 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~GH-~G~aVVeF~k  388 (472)
                      .+.|-|+|...         +.++|++.|+.|+++ .++......|. .|++.|+|..
T Consensus         8 tvfV~nlp~~~---------te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~   56 (85)
T d1zh5a2           8 SVYIKGFPTDA---------TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS   56 (85)
T ss_dssp             EEEEECCCTTC---------CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESC
T ss_pred             EEEEECCCCCC---------CHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcC
Confidence            36788887643         467899999999886 46666666664 7999999986

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.96  E-value=0.79  Score=34.01  Aligned_cols=56  Identities=20%  Similarity=0.254  Sum_probs=42.1

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCCchhhHHHHHH
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAERL  399 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kdwsGF~nA~rL  399 (472)
                      +.|-|++...         +.++|++.|+.|.++ +++...++. | ++|++.|+|.. -.....|+.+
T Consensus         3 lfV~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~-~~~a~~al~~   61 (77)
T d1uawa_           3 MFIGGLSWQT---------TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLAQ   61 (77)
T ss_dssp             EEEESCCSSC---------CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCC-TTHHHHHHHT
T ss_pred             EEEeCCCCcC---------CHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECC-HHHHHHHHHc
Confidence            3467876533         457899999999885 688888775 4 58999999975 5667777764

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=83.16  E-value=0.17  Score=38.97  Aligned_cols=59  Identities=24%  Similarity=0.093  Sum_probs=42.2

Q ss_pred             CceEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCC-CcceEEEEeCCCchhhHHHHHH
Q 012025          331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESSAGGYLEAERL  399 (472)
Q Consensus       331 PWMGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~G-H~G~aVVeF~kdwsGF~nA~rL  399 (472)
                      ++.+.|-|++..         .+.++|++.|+.|.++. ++.+....| ++|++.|+|. +-.-...|++|
T Consensus        13 ~~~ifV~nL~~~---------~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~-~~e~a~~Al~~   73 (91)
T d1fjeb1          13 PFNLFIGNLNPN---------KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFE-SAEDLEKALEL   73 (91)
T ss_dssp             SEEEEEECCCTT---------SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEES-SHHHHHHHHHG
T ss_pred             CcEEEEeCccCc---------chHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeC-CHHHHHHHHhc
Confidence            567789999753         35788999999998754 555554444 5799999999 45555666654

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.56  E-value=0.82  Score=35.20  Aligned_cols=47  Identities=13%  Similarity=0.294  Sum_probs=34.8

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcce-eEeccCCCCCcceEEEEeCCCc
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA  390 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K-Vr~lyg~~GH~G~aVVeF~kdw  390 (472)
                      +++|-|++.+        .++.++|++.|+.|.+++ |+.+..+   .|+|.|+|..--
T Consensus         4 ~l~V~nL~p~--------~~te~~L~~~F~~fG~I~~v~i~~~~---kg~afV~f~~~~   51 (109)
T d2adca1           4 VLLVSNLNPE--------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGN   51 (109)
T ss_dssp             EEEEESCCTT--------TCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHH
T ss_pred             EEEEeCCCcc--------cCCHHHHHHHHhhccccceEEEEecc---cceEEEEECCHH
Confidence            5678888432        246788999999999975 5666654   579999998743

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=0.81  Score=35.22  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcce--eEeccCCCC-CcceEEEEeCCCch
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQG-HRGMSVLIFESSAG  391 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~K--Vr~lyg~~G-H~G~aVVeF~kdws  391 (472)
                      .+-|-|++..-         +.++|++.|..|..+.  +..+++..| ++|+|.|+|.+--.
T Consensus        10 ~v~v~nLp~~~---------t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~   62 (103)
T d2cpya1          10 CAHITNIPFSI---------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDD   62 (103)
T ss_dssp             EEEEESCCTTS---------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHH
T ss_pred             EEEEeCCCCCC---------CHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHH
Confidence            35688987533         4678999999998874  566777776 49999999987544

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=1.1  Score=34.28  Aligned_cols=54  Identities=19%  Similarity=0.345  Sum_probs=39.0

Q ss_pred             EEEeecccccCCCCcccccChHHHHHHhhccCcc-eeEeccCCC-C-CcceEEEEeCCCchhhHHHH
Q 012025          334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAE  397 (472)
Q Consensus       334 GIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~-KVr~lyg~~-G-H~G~aVVeF~kdwsGF~nA~  397 (472)
                      ++|-|++..         .+.++|++.|+.|.++ .++..+++. | ++|++.|.|... .....|+
T Consensus        11 lfV~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~-~~a~~al   67 (90)
T d2cqga1          11 LIVLGLPWK---------TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVM   67 (90)
T ss_dssp             EEEESCCSS---------CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHH
T ss_pred             EEEECCCCC---------CCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCH-HHHHHHH
Confidence            568898753         3567899999999885 577888664 4 589999999665 3334444

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.66  E-value=1.3  Score=33.92  Aligned_cols=47  Identities=11%  Similarity=0.041  Sum_probs=34.2

Q ss_pred             eEEEeecccccCCCCcccccChHHHHHHhhccCcceeEeccCCCCCcceEEEEeCCCch
Q 012025          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAG  391 (472)
Q Consensus       333 MGIIvNt~te~dddgk~~G~S~~eLkd~fsgF~P~KVr~lyg~~GH~G~aVVeF~kdws  391 (472)
                      +++|-|++..         .+.++|++.|+.|.++.-..+-   -+.|+|.|+|..--+
T Consensus        12 ~l~V~nLp~~---------~t~~~L~~~F~~fG~I~~v~l~---~~kg~afV~f~~~~~   58 (111)
T d1whxa_          12 VILAKNLPAG---------TLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPLE   58 (111)
T ss_dssp             EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHHH
T ss_pred             EEEEECCCCC---------CCHHHHHhhhhccCCccEEEee---ccCceEEEEEcCHHH
Confidence            4578898752         3578899999999987544442   356899999987543