Citrus Sinensis ID: 012043

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
Protein Sequence
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHccccccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHcccccccEEEEEccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEcccEEEEEEEccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccEEEEEEEccccHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEccccEEHHHHcccccEEEEEEEHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEcccccccccccEEEccHccccHHEEccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEcEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHcHEEEEEccccccHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHHcHcccEEEEEccEEEEEcccccccHHHHcccccccccHHHcccHHcccccccccccccccccccccccEEEEccccccccccccccEEEEEccccccccccEEEEEEEccccHHHHHHHHHHHHccccEcEEEEccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHEEEEEEccHHHHHHHHHHHHHHHcEEEEcccccHHHHHHHcHccEEEEEEccEEEEEccccccHHHHHcccccc
Coil and Loop (DISEMBL)
maatmtpyqklnlshcfitkscdfvlfwrppsqgrtsfsssaevssKKLQLVTAsgstsnnalpvsqsvppitaskvkrhtisvfvgdesgiINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKvedisnephVERELMLIKLngdtstwpeIMWLVDIFRAKVvdisehaltievtgdpgkMVAVQRNLSKFGIKELARTGKIALrreklgdtapfwnfsaasypdleekkrtgifipetnqslngnanvdtssrgdvypvepyddfsanqvldahwgilydedpsglrshtlsmlvnntpgvlNIVTGVISrrgyniqslavgpaekeglscittvvpgtdesIGKLVQLLHKLIDlhevqdithlpfAERELILIKIAVNTAARRDVLDIAKIFRAravdvsdhtITLERllepygicevarTGRVALVREsgvdstylrgyplpl
Flexible Loop (DISEMBL)
maatmtpyqklnlshCFITKSCDFVLFWRPPSQGRTsfsssaevsSKKLQLVTASgstsnnalpvsqsvppitaskvKRHTIsvfvgdesgiiNRIAGVFARRGYNIESlavglnvdKALFTIVVSGTERVLRQVVEQLNKLVnvikvedisnephvERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAltievtgdpgkmVAVQRNLSKFGIKELARTGKIAlrreklgdtapfwnfsaasypdleEKKRTGIFipetnqslngnanvdTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLavgpaekegLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAvntaarrdVLDIAKIFraravdvsdhtitlerllepygiceVARTGRVALvresgvdstylrgyplpl
Low Complexity Region (SEG)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTsfsssaevssKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Disordered region (IsUnstruct)
*******YQKLNLSHCFITKSCDFVLFWR***********************************************VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE***RTGIFI*******************DVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYGICEVARTGRVALVRESGVDSTYLRG*****
Disordered Region (DISOPRED)
******P*QKLNLS******************************************************************TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR********************************************************YDDFSANQVLDAHWGI*Y*****GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYGICEVARTGRVALVRESG*****LRGYPL**
Disordered Region (DISEMBL)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQ*****************************LPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Disordered Region (DISPRO)
****MTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFS*S**********************************KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKR**********************RGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	472	2.2.26 [Sep-21-2011]
Q9FFF4	477	Acetolactate synthase sma	yes	no	0.927	0.918	0.707	0.0
Q93YZ7	491	Acetolactate synthase sma	no	no	0.864	0.830	0.693	1e-174
Q9SMC2	449	Acetolactate synthase sma	N/A	no	0.754	0.792	0.751	1e-157
Q55141	172	Acetolactate synthase sma	N/A	no	0.326	0.895	0.589	3e-45
Q9TLY1	172	Acetolactate synthase sma	N/A	no	0.324	0.889	0.567	1e-44
O78451	169	Acetolactate synthase sma	yes	no	0.322	0.899	0.594	7e-44
Q1XDQ7	174	Acetolactate synthase sma	N/A	no	0.347	0.942	0.530	5e-42
Q9MS98	181	Acetolactate synthase sma	N/A	no	0.324	0.845	0.541	5e-41
P51230	174	Acetolactate synthase sma	N/A	no	0.347	0.942	0.505	7e-41
P65161	168	Putative acetolactate syn	yes	no	0.326	0.916	0.467	4e-34

>sp|Q9FFF4|ILVH1_ARATH Acetolactate synthase small subunit 1, chloroplastic OS=Arabidopsis thaliana GN=VAT1 PE=1 SV=1

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/455 (70%), Positives = 371/455 (81%), Gaps = 17/455 (3%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RL 437
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE              
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQ 442

Query: 438 LEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           LE YGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 443 LEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL 477

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids but not in herbicide tolerance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93YZ7|ILVH2_ARATH Acetolactate synthase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=At2g31810 PE=1 SV=1

 Score =  613 bits (1580), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 305/440 (69%), Positives = 353/440 (80%), Gaps = 32/440 (7%)

Query: 53  TASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAV 112
           +  G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAV
Sbjct: 62  SVDGKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAV 119

Query: 113 GLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTST 172
           GLN DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +
Sbjct: 120 GLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPES 179

Query: 173 WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
             EIMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRRE
Sbjct: 180 RAEIMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRRE 239

Query: 233 KLGDTAPFWNFSAASYPDLEEK--------KRTGIFIPETNQSLNGNANVDTSSRGDVYP 284
           K+G TAPFW FSAASYPDL+E+         + G  +P+           +TS+ GDVYP
Sbjct: 240 KMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK----------ETSAGGDVYP 289

Query: 285 VEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQS 344
           VEP+ D   +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQS
Sbjct: 290 VEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQS 349

Query: 345 LAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIA 404
           LAVG AE +G+S ITTV+P TDES+ KLVQ L+KL+D+HEV D+THLPF+EREL+LIKIA
Sbjct: 350 LAVGHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIA 409

Query: 405 VNTAARRDVLDIAKIFRARAVDVSDHTIT------------LERLLEPYGICEVARTGRV 452
           VN AARRDVLDIA IFRA+AVDVSDHTIT            L+RLLEPYGICEVARTGRV
Sbjct: 410 VNAAARRDVLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVARTGRV 469

Query: 453 ALVRESGVDSTYLRGYPLPL 472
           AL RESGVDS YLRGY  PL
Sbjct: 470 ALARESGVDSKYLRGYSFPL 489

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids. Contains 2 repeats, each of them being able to activate partially the catalytic subunit. The enzyme reconstituted with the first repeat is inhibited by leucine, but not by valine or isoleucine and the enzyme reconstituted with the second repeat is not inhibited by any branched-chain amino acid.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMC2|ILVH_NICPL Acetolactate synthase small subunit 1, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/370 (75%), Positives = 312/370 (84%), Gaps = 14/370 (3%)

Query: 92  IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151
           +INRIAGVFARRGYNIESLAVGLN DKALFTIVVSGTERVL+QV+EQL KLVNVIKVED+
Sbjct: 37  MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVMEQLQKLVNVIKVEDL 96

Query: 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQR 211
           S EP VERELMLIK++ D     E+MWLVD+FRAK+VDIS+ +LTIEVTGDPGKMVAVQR
Sbjct: 97  SKEPQVERELMLIKISADPKYRAEVMWLVDVFRAKIVDISDQSLTIEVTGDPGKMVAVQR 156

Query: 212 NLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGN 271
           NLSKFGI+E+ARTGKIALRREK+G++APFW FSAASYPDLE     G       ++ NG 
Sbjct: 157 NLSKFGIREIARTGKIALRREKMGESAPFWRFSAASYPDLEGAMSAGTISRTIKRTPNGE 216

Query: 272 ANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIV 331
           +   + + GDVYPVE  D+   +QVLDAHWG+L DED SGLRSHTLSMLVN+TPGVLNIV
Sbjct: 217 SM--SMAEGDVYPVETDDNSGVSQVLDAHWGVLNDEDTSGLRSHTLSMLVNDTPGVLNIV 274

Query: 332 TGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391
           TGV +RRGYNIQSLAVG AE EGLS ITTVVPGTDES+ KLVQ L+KL+D+HEV+DITHL
Sbjct: 275 TGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESVSKLVQQLYKLVDIHEVRDITHL 334

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLE 439
           PFAEREL+LIKIAVN AARR+VLDIA IFRA+AVDVSDHTITLE            RLLE
Sbjct: 335 PFAERELMLIKIAVNAAARRNVLDIASIFRAKAVDVSDHTITLELTGDLHKMVRLQRLLE 394

Query: 440 PYGICEVART 449
           PYGICEVART
Sbjct: 395 PYGICEVART 404

Regulatory subunit of acetohydroxy-acid synthase. Probably involved in feedback inhibition by branched-chain amino acids. Not involved in herbicide tolerance.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q55141|ILVH_SYNY3 Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=2

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 120/156 (76%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G++ RIAG+FARRG+NIESLAVG     D +  T+VV G E  + Q+ 
Sbjct: 2   KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVNVIKV+DI+  P VERELML+K++ +     E++ L  +FRA++VDISE  +T
Sbjct: 62  KQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           IEV GDPGKMVA+ + L+KFGIKE+ARTGKIAL RE
Sbjct: 122 IEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRE 157

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9TLY1|ILVH_CYACA Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 123/155 (79%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           ++T+SV V DE+G++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+ 
Sbjct: 2   KYTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++KV++I+  P VEREL+L+K+N  TS+ PEI+ ++ +FRAKVVD+SE+ L 
Sbjct: 62  KQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLV 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           +E+TGDPGK+ A+Q+ L KFGI E+ARTGKIAL R
Sbjct: 122 LELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTR 156

Cyanidium caldarium (taxid: 2771)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|O78451|ILVH_GUITH Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1

 Score =  178 bits (452), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 120/158 (75%), Gaps = 6/158 (3%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDKALFTIVVSGTERVLRQ 134
           +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    L + +   T+VV   ER + Q
Sbjct: 2   KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISR--ITMVVPSDERTIEQ 59

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL KLVN++KVEDI+N P VERELMLIKL   T    E + +++IFRAKVVD+SE  
Sbjct: 60  LTKQLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDF 119

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           L IEVTGDPGK+VA+++ LSKF I E+ RTGKI+L RE
Sbjct: 120 LIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRE 157

Guillardia theta (taxid: 55529)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q1XDQ7|ILVH_PORYE Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1

 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 122/166 (73%), Gaps = 2/166 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++ V+D++N P VERELMLIK+  ++ T  E + +V IFRAK+VDI+E  L 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLI 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWN 242
           IEVTGDPGK+VA+++ L+KFGI E+ARTGKI L R    +T    N
Sbjct: 122 IEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVRTSKINTEYLKN 167

Porphyra yezoensis (taxid: 2788)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9MS98|ILVH_GALSU Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1

 Score =  169 bits (427), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 120/157 (76%), Gaps = 4/157 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA---LFTIVVSGTERVLRQV 135
           +HT+SV V DESG++ RI+G+FARRG+NI+SLAVG   +KA     T+V+ G  R++ Q+
Sbjct: 2   KHTLSVLVEDESGVLTRISGLFARRGFNIDSLAVG-PAEKAGISRITMVIRGDNRIIEQI 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            + L KLVNV+K++DI+N P VERELMLIK+    +   EI+ + +IFRA+VVD+SE  +
Sbjct: 61  TKHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFI 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
            +E+TGDPGK+ A+++ L K+GI E+ARTGKIAL RE
Sbjct: 121 ILEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRE 157

Galdieria sulphuraria (taxid: 130081)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P51230|ILVH_PORPU Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1

 Score =  168 bits (426), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 8/172 (4%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++ V+D++N P VERELMLIK+  ++    E + +V IFRA VVDI+E  + 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLII 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR------EKLGDTAPFWN 242
           +EVTGDPGK+VA+++ L+KFGI E+ARTGKI+L R      E L D    +N
Sbjct: 122 VEVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLKDKVVAYN 173

Porphyra purpurea (taxid: 2787)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P65161|ILVH_MYCTU Putative acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=1 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 110/156 (70%), Gaps = 2/156 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQV 135
           K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct: 4   KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct: 64  TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R
Sbjct: 124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
359495876	476	PREDICTED: uncharacterized protein LOC10	0.853	0.846	0.822	0.0
449442655	480	PREDICTED: uncharacterized protein LOC10	0.934	0.918	0.715	0.0
224098798	414	predicted protein [Populus trichocarpa]	0.838	0.956	0.799	0.0
224112371	414	predicted protein [Populus trichocarpa]	0.834	0.951	0.788	0.0
225434187	482	PREDICTED: uncharacterized protein LOC10	0.908	0.890	0.726	0.0
15237321	477	protein valine-tolerant 1 [Arabidopsis t	0.927	0.918	0.707	0.0
147792338	451	hypothetical protein VITISV_043824 [Viti	0.838	0.878	0.780	0.0
222423112	477	AT5G16290 [Arabidopsis thaliana]	0.927	0.918	0.705	0.0
255577893	493	acetolactate synthase, putative [Ricinus	0.908	0.870	0.723	0.0
297807659	476	hypothetical protein ARALYDRAFT_488480 [	0.927	0.920	0.703	0.0

>gi|359495876|ref|XP_002266924.2| PREDICTED: uncharacterized protein LOC100256605 [Vitis vinifera] gi|296083398|emb|CBI23353.3| unnamed protein product [Vitis vinifera]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/417 (82%), Positives = 360/417 (86%), Gaps = 14/417 (3%)

Query: 68  SVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127
           S PPI  SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVVSG
Sbjct: 62  SAPPIQRSKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSG 121

Query: 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKV 187
           TE VLRQVVEQLNKLVNV+KV+D+S EP VERELMLIKLN D S   EIMWLVDIFRAK+
Sbjct: 122 TETVLRQVVEQLNKLVNVLKVKDLSREPQVERELMLIKLNADPSKRAEIMWLVDIFRAKI 181

Query: 188 VDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAAS 247
           VDISEH+LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK+G+TAPFW FSAAS
Sbjct: 182 VDISEHSLTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKMGETAPFWRFSAAS 241

Query: 248 YPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDE 307
           YPDLEE       +    + LNGN +  TS  GDVYPVEP++DFS N VLD HWG L DE
Sbjct: 242 YPDLEETIPVNALVRNVKRPLNGNPS--TSPGGDVYPVEPFNDFSVNPVLDPHWGALNDE 299

Query: 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE 367
           D SGLRSHTLSMLVN+TPGVLNIVTGVISRR YNIQSLAVGPAE EG S ITTVVPGTDE
Sbjct: 300 DSSGLRSHTLSMLVNDTPGVLNIVTGVISRRSYNIQSLAVGPAEMEGRSHITTVVPGTDE 359

Query: 368 SIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDV 427
           SI KLVQ L KLIDLHEV+DITH+PFAEREL+LIKIAVNTAARRDVLDIA IFRA+AVDV
Sbjct: 360 SISKLVQQLQKLIDLHEVRDITHMPFAERELMLIKIAVNTAARRDVLDIASIFRAKAVDV 419

Query: 428 SDHTITLE------------RLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           SDHTITLE            RLLEPYGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 420 SDHTITLELTGDLNKMVALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYALPL 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442655|ref|XP_004139096.1| PREDICTED: uncharacterized protein LOC101208212 [Cucumis sativus]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/468 (71%), Positives = 381/468 (81%), Gaps = 27/468 (5%)

Query: 29  RPPSQG---RTSFSSSAEVSSKKLQ---------LVTASGSTSNNALPVSQSVPPITASK 76
           +PP      R  FS+S  V  +++Q         L  +S + ++NA+ V+ S  P   S 
Sbjct: 16  KPPYSALASRHFFSTSLIVKYQEVQKWNRFEFQRLQVSSAAVNDNAVTVTDSSRPSIRST 75

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           V RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV+GTE VLRQVV
Sbjct: 76  VMRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVTGTENVLRQVV 135

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VEREL+L+KLN D+ST  EIMWLVDIFR K+VDISEH++T
Sbjct: 136 EQLNKLVNVIKVEDISRQPQVERELVLMKLNADSSTRAEIMWLVDIFRGKIVDISEHSVT 195

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKR 256
           IEVTGDPGK+VAV+RN SKFGI+ELARTGKIALRREK G+TAPFW FSAASYPDLE+ + 
Sbjct: 196 IEVTGDPGKLVAVERNFSKFGIRELARTGKIALRREKRGETAPFWRFSAASYPDLEDSRP 255

Query: 257 TGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHT 316
              F+ +  QSL G     ++S GDVYPVEPY+ F ++QVLDAHWG+LYDED SG +SHT
Sbjct: 256 INSFVEDAIQSLKGQV---STSTGDVYPVEPYESFHSDQVLDAHWGVLYDEDSSGHQSHT 312

Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           LSMLVN+ PGVLN+VTG+ISRRGYNIQSLAVG AE+EGLS ITTV+PGTDESIGKLVQ L
Sbjct: 313 LSMLVNDYPGVLNVVTGIISRRGYNIQSLAVGHAEREGLSRITTVIPGTDESIGKLVQQL 372

Query: 377 HKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTIT--- 433
           HKLIDLHEV+D+THLPFAEREL+LIKIA N  ARRDVLDIA IFRA+AVDVS HTIT   
Sbjct: 373 HKLIDLHEVRDLTHLPFAERELMLIKIAANATARRDVLDIADIFRAKAVDVSGHTITLQL 432

Query: 434 ---------LERLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
                    L+RLLEP+GICEVARTGRVAL RESGVDS YLRGYPLP+
Sbjct: 433 TGDLNKMVALQRLLEPFGICEVARTGRVALERESGVDSAYLRGYPLPI 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098798|ref|XP_002311270.1| predicted protein [Populus trichocarpa] gi|222851090|gb|EEE88637.1| predicted protein [Populus trichocarpa]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/414 (79%), Positives = 362/414 (87%), Gaps = 18/414 (4%)

Query: 76  KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQV 135
           +++RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GTE+VLRQV
Sbjct: 1   RLQRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVCGTEKVLRQV 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
           VEQLNKLVNVIKV+DIS EP VERELMLIK N D ST  E+MWLVDIFRAK+VDISE++L
Sbjct: 61  VEQLNKLVNVIKVDDISREPQVERELMLIKFNADPSTRAEVMWLVDIFRAKIVDISENSL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKK 255
           TIEVTGDPGKM A+QRNLSKFGIKELARTGKIALRRE++G+TAPFWNFSAASYPDLE   
Sbjct: 121 TIEVTGDPGKMAAIQRNLSKFGIKELARTGKIALRRERMGETAPFWNFSAASYPDLERVP 180

Query: 256 RTGIFIPETNQSLNGNA------NVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDP 309
                   + +++ GNA      +  +SS+GDVYPVEPYDDF  N VLDAHWG+LYDED 
Sbjct: 181 SGVALARNSTKTVAGNANLSLNGSNSSSSKGDVYPVEPYDDFLMNPVLDAHWGVLYDEDS 240

Query: 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESI 369
           +GLRSHTLSMLVNN PGVLNIVTGVISRRGYNIQSLAVGPAE+EGLS ITTV+PGTDESI
Sbjct: 241 NGLRSHTLSMLVNNCPGVLNIVTGVISRRGYNIQSLAVGPAEEEGLSRITTVIPGTDESI 300

Query: 370 GKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSD 429
           GKLVQ LHKLIDLHEV+DITH PFAEREL+LIKIA N+AARRDVLDIA+IFRA+AVDVSD
Sbjct: 301 GKLVQQLHKLIDLHEVRDITHSPFAERELMLIKIAANSAARRDVLDIARIFRAKAVDVSD 360

Query: 430 HTITLE------------RLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLP 471
           HTITLE            R+LEPYGICEVARTGRVALVRESGVDSTYLRG+PLP
Sbjct: 361 HTITLELTGDFNKMVALQRILEPYGICEVARTGRVALVRESGVDSTYLRGFPLP 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112371|ref|XP_002316167.1| predicted protein [Populus trichocarpa] gi|222865207|gb|EEF02338.1| predicted protein [Populus trichocarpa]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/416 (78%), Positives = 358/416 (86%), Gaps = 22/416 (5%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           ++RHTISVFVGDE GIINRIAGVFARRGY+IESLAVGLN DKALFTIVV GTE+VLRQVV
Sbjct: 1   MQRHTISVFVGDEIGIINRIAGVFARRGYSIESLAVGLNKDKALFTIVVCGTEKVLRQVV 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VERELMLIKLN + ST  EIMWLVDIFRAK+VDISEH+LT
Sbjct: 61  EQLNKLVNVIKVEDISRDPQVERELMLIKLNANPSTRAEIMWLVDIFRAKIVDISEHSLT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE---- 252
           IEVTGDPGKM AVQRNLSKFGIKELARTGKIAL+RE +G+TAPFW FSAASYPDL+    
Sbjct: 121 IEVTGDPGKMAAVQRNLSKFGIKELARTGKIALKRETMGETAPFWGFSAASYPDLDRIPS 180

Query: 253 ----EKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDED 308
               ++  T  F    + SLNG+    +SS+GDVY VEPYDDF ANQVLDAHWG+LYDED
Sbjct: 181 GVALDRNSTNTFAGNGDLSLNGSNT--SSSKGDVYAVEPYDDFLANQVLDAHWGVLYDED 238

Query: 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES 368
            +GLRSHTLSMLVNN PGVLNI+TGVISRRGYNIQSLAVG AEKEGLS ITTV+PGTDES
Sbjct: 239 SNGLRSHTLSMLVNNCPGVLNILTGVISRRGYNIQSLAVGHAEKEGLSRITTVIPGTDES 298

Query: 369 IGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS 428
           IGKLVQ LHK ID HEV+DITH PFAEREL LIKIA N+AARRDVLDIA+IFRA+AVD S
Sbjct: 299 IGKLVQQLHKSIDFHEVRDITHSPFAERELTLIKIAANSAARRDVLDIARIFRAKAVDFS 358

Query: 429 DHTITLE------------RLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           DHTITLE            R+LEPYGICEVARTGRVALVRESGVDS++LRG+PLPL
Sbjct: 359 DHTITLELTGDLNKMVALQRILEPYGICEVARTGRVALVRESGVDSSHLRGFPLPL 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434187|ref|XP_002279286.1| PREDICTED: uncharacterized protein LOC100261174 [Vitis vinifera] gi|296084341|emb|CBI24729.3| unnamed protein product [Vitis vinifera]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/450 (72%), Positives = 370/450 (82%), Gaps = 21/450 (4%)

Query: 42  AEVSSKKLQLVTASGSTSNNAL-------PVSQSVPPITASKVKRHTISVFVGDESGIIN 94
           +++ + +L  +  S S++ N +        V+   P    SKV+RHTISVFVGDESG+IN
Sbjct: 33  SKLKNPQLGKLVVSASSAENGVGFNDKTAAVANPAPSAARSKVRRHTISVFVGDESGMIN 92

Query: 95  RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154
           RIAGVFARRGYNI+SLAVGLN DKALFTIVVSGTERVL+QVVEQL+KLVNV+KVEDIS E
Sbjct: 93  RIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQVVEQLHKLVNVLKVEDISTE 152

Query: 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214
           PHVERELMLIK+N +     EIMWLV+IFRAK+VDISEH++TIEVTGDPGKMVAVQRNLS
Sbjct: 153 PHVERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLS 212

Query: 215 KFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANV 274
           KFGI+E+ARTGKIALRREK+G++APFW FSA+SYPDLE +     F+    ++LN  +  
Sbjct: 213 KFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGEIPENTFVETRTKTLNSES-- 270

Query: 275 DTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGV 334
           D S  GDVYPVEP D F  N+VLDAHWG+LYDED SGLRSHTLSM+VNN PGVLN+VTGV
Sbjct: 271 DASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRSHTLSMVVNNAPGVLNLVTGV 330

Query: 335 ISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394
            +RRGYNIQSLAVG AE EGLS ITTVVPGTDESI KLVQ L KLIDLH+V+DITHLPFA
Sbjct: 331 FARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQQLKKLIDLHDVRDITHLPFA 390

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG 442
           EREL+LIKIAVN AARRDVLDIA IFRA+A+DVSDHTITLE            RLLEPYG
Sbjct: 391 ERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTITLELTGALDKMVALQRLLEPYG 450

Query: 443 ICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           ICEVARTGRVALVRESGVDS YLRGY  PL
Sbjct: 451 ICEVARTGRVALVRESGVDSNYLRGYAFPL 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237321|ref|NP_197133.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|30685790|ref|NP_850829.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|75271992|sp|Q9FFF4.1|ILVH1_ARATH RecName: Full=Acetolactate synthase small subunit 1, chloroplastic; AltName: Full=Acetohydroxy-acid synthase small subunit; Short=AHAS; Short=ALS; AltName: Full=Protein valine-tolerant 1; Flags: Precursor gi|9759111|dbj|BAB09596.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|63003744|gb|AAY25401.1| At5g16290 [Arabidopsis thaliana] gi|110742103|dbj|BAE98982.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|332004889|gb|AED92272.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|332004890|gb|AED92273.1| protein valine-tolerant 1 [Arabidopsis thaliana]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/455 (70%), Positives = 371/455 (81%), Gaps = 17/455 (3%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RL 437
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE              
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQ 442

Query: 438 LEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           LE YGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 443 LEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792338|emb|CAN61470.1| hypothetical protein VITISV_043824 [Vitis vinifera]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/410 (78%), Positives = 354/410 (86%), Gaps = 14/410 (3%)

Query: 75  SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQ 134
           S+V+RHTISVFVGDESG+INRIAGVFARRGYNI+SLAVGLN DKALFTIVVSGTERVL+Q
Sbjct: 42  SQVRRHTISVFVGDESGMINRIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQ 101

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           VVEQL+KLVNV+KVEDIS EPHVERELMLIK+N +     EIMWLV+IFRAK+VDISEH+
Sbjct: 102 VVEQLHKLVNVLKVEDISTEPHVERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHS 161

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEK 254
           +TIEVTGDPGKMVAVQRNLSKFGI+E+ARTGKIALRREK+G++APFW FSA+SYPDLE +
Sbjct: 162 VTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGE 221

Query: 255 KRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRS 314
                F+    ++LN  +  D S  GDVYPVEP D F  N+VLDAHWG+LYDED SGLRS
Sbjct: 222 IPENTFVETRTKTLNSES--DASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRS 279

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLSM+VNN PGVLN+VTGV +RRGYNIQSLAVG AE EGLS ITTVVPGTDESI KLVQ
Sbjct: 280 HTLSMVVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQ 339

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L KLIDLH+V+DITHLPFAEREL+LIKIAVN AARRDVLDIA IFRA+A+DVSDHTITL
Sbjct: 340 QLKKLIDLHDVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTITL 399

Query: 435 E------------RLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           E            RLLEPYGICEVARTGRVALVRESGVDS YLRGY  PL
Sbjct: 400 ELTGALDKMVALQRLLEPYGICEVARTGRVALVRESGVDSNYLRGYAFPL 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423112|dbj|BAH19535.1| AT5G16290 [Arabidopsis thaliana]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/455 (70%), Positives = 371/455 (81%), Gaps = 17/455 (3%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGI+E+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIQEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RL 437
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE              
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQ 442

Query: 438 LEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           LE YGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 443 LEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577893|ref|XP_002529819.1| acetolactate synthase, putative [Ricinus communis] gi|223530696|gb|EEF32568.1| acetolactate synthase, putative [Ricinus communis]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/452 (72%), Positives = 369/452 (81%), Gaps = 23/452 (5%)

Query: 33  QGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGI 92
           Q R  F  SA   S K   V     +SN ++P +      T SKV+RHTISVFVGDESG+
Sbjct: 53  QPRRKFIVSATADSHKDDTVL----SSNGSVPAAA-----TLSKVRRHTISVFVGDESGM 103

Query: 93  INRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152
           INRIAGVFARRGYNIESLAVGLN DKALFTIVVSGTERVL+QVVEQL KLVNV+KVED+S
Sbjct: 104 INRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVVEQLQKLVNVMKVEDLS 163

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
           +EP VERELMLIK+N D S   EIMWLV IFRAK+VDISEH+LTIEVTGDPGKMVAVQRN
Sbjct: 164 SEPQVERELMLIKVNADPSYRAEIMWLVGIFRAKIVDISEHSLTIEVTGDPGKMVAVQRN 223

Query: 213 LSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNA 272
           LSKFGI+E+ARTGKIALRREK+G+ APFW FSAASYPDL E +     +   ++++ G+ 
Sbjct: 224 LSKFGIREIARTGKIALRREKMGECAPFWRFSAASYPDLGEIRSEDALLGSKSRAVLGDD 283

Query: 273 NVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVT 332
             +TS+ GDVYPVE  D F   QVLDAHWG+L +ED +GLRSHTLSMLVN++PGVLNIVT
Sbjct: 284 --ETSAGGDVYPVETSDSFMLTQVLDAHWGVLNEEDTTGLRSHTLSMLVNDSPGVLNIVT 341

Query: 333 GVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392
           G+ +RRGYN+QSLAVG +E EGLS ITTVVPGTDESI KLVQ L+KLIDLHEV+D+THLP
Sbjct: 342 GIFARRGYNVQSLAVGHSETEGLSRITTVVPGTDESISKLVQQLYKLIDLHEVRDLTHLP 401

Query: 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEP 440
           FAEREL+LIKIAVN AARRDVLDIA IFRA+AVDVSDHTITLE            RLLEP
Sbjct: 402 FAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEP 461

Query: 441 YGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
           YGICEVARTGR+ALVRESGVDS YLRGY  P+
Sbjct: 462 YGICEVARTGRIALVRESGVDSKYLRGYSFPI 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807659|ref|XP_002871713.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata] gi|297317550|gb|EFH47972.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/456 (70%), Positives = 372/456 (81%), Gaps = 18/456 (3%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QS+ P    +V+RHTISVFVGDE
Sbjct: 25  PAKTPNSLQVTPIIDGRKMRNATVLSAASTDKAITTAQSIAPTACDRVRRHTISVFVGDE 84

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 85  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 144

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SEH+LTIEVTGDPGKMVA+
Sbjct: 145 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEHSLTIEVTGDPGKMVAL 204

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPE-TNQSL 268
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L  +  +   + E T  +L
Sbjct: 205 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVNESSSHETVAEKTKLAL 264

Query: 269 NGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVL 328
            GN N   S  GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVL
Sbjct: 265 TGNGNA--SPGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVL 320

Query: 329 NIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388
           N++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+I
Sbjct: 321 NLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNI 380

Query: 389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------R 436
           TH+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE             
Sbjct: 381 THMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQT 440

Query: 437 LLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 472
            LE YG+CEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 441 QLEAYGLCEVARTGRVALVRESGVDSTYLRGYSLPL 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
TAIR|locus:2171292	477	VAT1 "VALINE-TOLERANT 1" [Arab	0.894	0.884	0.728	7.3e-162
TAIR|locus:2045248	491	AT2G31810 [Arabidopsis thalian	0.881	0.847	0.701	1.7e-153
TIGR_CMR|CHY_0518	170	CHY_0518 "acetolactate synthas	0.324	0.9	0.574	1.2e-40
UNIPROTKB|P65161	168	ilvH "Putative acetolactate sy	0.334	0.940	0.462	9.5e-34
TIGR_CMR|DET_0832	178	DET_0832 "acetolactate synthas	0.324	0.859	0.470	2.9e-32
TIGR_CMR|GSU_1910	163	GSU_1910 "acetolactate synthas	0.332	0.963	0.433	4.7e-32
TIGR_CMR|CHY_1594	164	CHY_1594 "acetolactate synthas	0.324	0.932	0.419	7.5e-28
TIGR_CMR|SPO_2579	186	SPO_2579 "acetolactate synthas	0.362	0.919	0.397	4.8e-25
TIGR_CMR|CPS_3237	165	CPS_3237 "acetolactate synthas	0.332	0.951	0.378	8.1e-25
UNIPROTKB|P00894	163	ilvH "IlvH" [Escherichia coli	0.319	0.926	0.386	6.5e-24

TAIR|locus:2171292 VAT1 "VALINE-TOLERANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 320/439 (72%), Positives = 367/439 (83%)

Query:    47 KKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGY 105
             +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDESGIINRIAGVFARRGY
Sbjct:    43 RKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDESGIINRIAGVFARRGY 102

Query:   106 NIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165
             NIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVED+S EPHVERELMLIK
Sbjct:   103 NIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIK 162

Query:   166 LNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTG 225
             LN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+  NL KFGIKE+ARTG
Sbjct:   163 LNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVALTTNLEKFGIKEIARTG 222

Query:   226 KIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPV 285
             KIALRREK+G+TAPFW FSAASYP L ++        +T  +L GN N   SS GDVYPV
Sbjct:   223 KIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALTGNGNA--SSGGDVYPV 280

Query:   286 EPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSL 345
             EPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN++TG ISRRGYNIQSL
Sbjct:   281 EPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLNLITGAISRRGYNIQSL 338

Query:   346 AVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAV 405
             AVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+ITH+PFAEREL+LIK+A 
Sbjct:   339 AVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNITHMPFAERELMLIKVAA 398

Query:   406 NTAARRDVLDIAKIFRARAVDVSDHTITLE------RL------LEPYGICEVARTGRVA 453
             +T+ARRDVLDIA++FRA+A+DVSDHTITLE      ++      LE YGICEVARTGRVA
Sbjct:   399 DTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQLEAYGICEVARTGRVA 458

Query:   454 LVRESGVDSTYLRGYPLPL 472
             LVRESGVDSTYLRGY LPL
Sbjct:   459 LVRESGVDSTYLRGYSLPL 477

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0006551 "leucine metabolic process" evidence=IMP

GO:0006573 "valine metabolic process" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2045248 AT2G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
 Identities = 303/432 (70%), Positives = 351/432 (81%)

Query:    53 TASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAV 112
             +  G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAV
Sbjct:    62 SVDGKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAV 119

Query:   113 GLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTST 172
             GLN DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +
Sbjct:   120 GLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPES 179

Query:   173 WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
               EIMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRRE
Sbjct:   180 RAEIMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRRE 239

Query:   233 KLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFS 292
             K+G TAPFW FSAASYPDL+E+    +       ++      +TS+ GDVYPVEP+ D  
Sbjct:   240 KMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK--ETSAGGDVYPVEPFFDPK 297

Query:   293 ANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK 352
              +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQSLAVG AE 
Sbjct:   298 VHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAET 357

Query:   353 EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRD 412
             +G+S ITTV+P TDES+ KLVQ L+KL+D+HEV D+THLPF+EREL+LIKIAVN AARRD
Sbjct:   358 KGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRD 417

Query:   413 VLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESGV 460
             VLDIA IFRA+AVDVSDHTITL+            RLLEPYGICEVARTGRVAL RESGV
Sbjct:   418 VLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVARTGRVALARESGV 477

Query:   461 DSTYLRGYPLPL 472
             DS YLRGY  PL
Sbjct:   478 DSKYLRGYSFPL 489

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TIGR_CMR|CHY_0518 CHY_0518 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 89/155 (57%), Positives = 119/155 (76%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVV 136
             RHT++V V +  G++ R+AG+F+RRGYNI+SLAVG   N D +  TIVV G +RVL QVV
Sbjct:     2 RHTLAVLVENNPGVLARVAGLFSRRGYNIDSLAVGRTENPDISRMTIVVEGDDRVLEQVV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL KLV+VIKV+DI++E +V REL+L+K++ D++T  EIM +V+IFRA++VDI    LT
Sbjct:    62 KQLRKLVDVIKVQDITSEQYVSRELLLLKVHADSNTRGEIMQIVEIFRARIVDIGPKTLT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             IE TGD  K+ A++  L  FGIKEL RTGKIAL R
Sbjct:   122 IEATGDEDKIEAIENALRPFGIKELVRTGKIALLR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P65161 ilvH "Putative acetolactate synthase small subunit" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 74/160 (46%), Positives = 111/160 (69%)

Query:    78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQV 135
             K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct:     4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query:   136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
              +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct:    64 TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query:   196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R   G
Sbjct:   124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0832 DET_0832 "acetolactate synthase, small subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/155 (47%), Positives = 106/155 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             +HTI   V D  G++NR+A +F RRG+NI+S+AVG +        TIVV G   ++ QV 
Sbjct:     5 KHTIVALVEDRPGVLNRMASLFRRRGFNIDSIAVGRSETPGFSRMTIVVDGANTMVEQVR 64

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL+K+V+V+KV DI+ +  + REL LIK+    +   EIM +VDIFRAK+VD++  +LT
Sbjct:    65 KQLDKVVDVVKVSDITGQDIICRELALIKVKSTPANRSEIMQIVDIFRAKIVDVASDSLT 124

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             +EVTGD  K+ ++   L  FGIKE+ RTG+IA+ R
Sbjct:   125 VEVTGDEEKVNSLYNLLRAFGIKEITRTGRIAMTR 159

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1910 GSU_1910 "acetolactate synthase, small subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 69/159 (43%), Positives = 109/159 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             RHTI+V V +E G+++R+AG+F+ RG+NI+SL+V    D+++   TIV  G +++L Q+ 
Sbjct:     2 RHTITVLVENEFGVLSRVAGLFSGRGFNIDSLSVAPTNDESISRMTIVTRGDDQILEQIT 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QLNKL++VIKV D ++   +ERE+ LIK+  +     E++ +VDIFR+K++D++  + T
Sbjct:    62 KQLNKLIDVIKVIDFTDGEVIEREMALIKVTAEDDARAEVLRIVDIFRSKIIDVTPRSFT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             IE TG P K+ A+   L   G+KEL RTG  A+ R   G
Sbjct:   122 IEATGTPAKIDAILELLRPLGLKELVRTGPAAIGRGAKG 160

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1594 CHY_1594 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 312 (114.9 bits), Expect = 7.5e-28, P = 7.5e-28
 Identities = 65/155 (41%), Positives = 104/155 (67%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             +HT+SV V ++ G++ RI+G+ +RR +NIES+  G + +  +   TIVV G + VL QV+
Sbjct:     2 KHTLSVLVLNKPGVLARISGLLSRRMFNIESITAGYSEEPNITRITIVVQGDDLVLEQVI 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
              QL+KL++VIK++++  E  + REL LIK+        +I+ +V+IFRA +VD++   + 
Sbjct:    62 NQLSKLIDVIKIKELPMEETIARELALIKVRALPEKRADIVNIVNIFRANIVDVNRETMV 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             IE+TGD  K+ A+   L+  GI E+ RTGK+AL R
Sbjct:   122 IELTGDEDKINALCEVLTDHGIVEIVRTGKVALNR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_2579 SPO_2579 "acetolactate synthase, small subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 288 (106.4 bits), Expect = 4.8e-25, P = 4.8e-25
 Identities = 72/181 (39%), Positives = 108/181 (59%)

Query:    56 GSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115
             GS+S++A     ++ P  +   +RHTI++ V +E G++ R+ G+F+ RGYNIESL V   
Sbjct:     9 GSSSHSAY----NLRPTFSDVAERHTIALLVENEPGVLARVIGLFSGRGYNIESLTVA-E 63

Query:   116 VDK----ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH-VERELMLIKLNGDT 170
             VD     +  TIV +GT +V+ Q+  QL ++V+V  V D++ E   VEREL ++K+ G  
Sbjct:    64 VDHTGHLSRITIVTTGTPQVIEQIKAQLGRIVSVRDVHDLTVEGRSVERELAMLKVVGSG 123

Query:   171 STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALR 230
                 E + L DIFRA VVD +  +   E+TG P K+ A    +   G+ E+ARTG  AL 
Sbjct:   124 DKRVEALRLADIFRANVVDSTLSSFVFEITGAPEKIDAFADLMRPLGLAEIARTGVAALL 183

Query:   231 R 231
             R
Sbjct:   184 R 184

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3237 CPS_3237 "acetolactate synthase III, small subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 286 (105.7 bits), Expect = 8.1e-25, P = 8.1e-25
 Identities = 62/164 (37%), Positives = 104/164 (63%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             R  +++ + +E G ++RI G+F++R +NIESL V    D +L   TI   G ++VL Q+V
Sbjct:     2 RRILAILMENEPGSLSRIVGLFSQRAFNIESLTVAPTDDNSLSRMTIATKGDDKVLEQIV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNG-DTSTWPEIMWLVDIFRAKVVDISEHAL 195
             +Q+NKL++VIK+ DI++  H+EREL+L+K+   +  +  E+  + DIFR  ++DI +   
Sbjct:    62 KQVNKLIDVIKITDITDRKHIERELLLVKVAAMNDKSRTEVTRITDIFRGNIIDIGKQVY 121

Query:   196 TIEVTGDPGKMVAVQRNL-SKFGIKELARTGKIALRREKLGDTA 238
             T+++TGD  K+ A    L ++  I E AR+G + + R   GD A
Sbjct:   122 TVQLTGDAEKLNAFINALQNETEIIESARSGCVGMAR---GDQA 162

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P00894 ilvH "IlvH" [Escherichia coli K-12 (taxid:83333)]

 Score = 278 (102.9 bits), Expect = 6.5e-24, P = 6.5e-24
 Identities = 61/158 (38%), Positives = 100/158 (63%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct:     2 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++    T
Sbjct:    62 KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 121

Query:   197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
             +++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct:   122 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 157

GO:0009097 "isoleucine biosynthetic process" evidence=IEA;IDA

GO:0003984 "acetolactate synthase activity" evidence=IEA;IDA

GO:0009099 "valine biosynthetic process" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SMC2	ILVH_NICPL	No assigned EC number	0.7513	0.7542	0.7928	N/A	no
Q9FFF4	ILVH1_ARATH	No assigned EC number	0.7076	0.9279	0.9182	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.2.1	LOW CONFIDENCE prediction!
4th Layer	2.2.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	472
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	5e-71
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	3e-66
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	4e-59
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	9e-57
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	3e-56
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	5e-56
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	2e-44
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	2e-42
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	2e-28
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	3e-28
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	1e-25
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	1e-21
pfam13710	63	pfam13710, ACT_5, ACT domain	5e-12
pfam13710	63	pfam13710, ACT_5, ACT domain	6e-10
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	4e-08
pfam01842	66	pfam01842, ACT, ACT domain	3e-07
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	4e-07
pfam01842	66	pfam01842, ACT, ACT domain	7e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-04
cd04883	72	cd04883, ACT_AcuB, C-terminal ACT domain of the Ba	0.001
pfam13291	77	pfam13291, ACT_4, ACT domain	0.003
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	0.003
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	0.003
cd04879	71	cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include	0.004
PRK13562	84	PRK13562, PRK13562, acetolactate synthase 1 regula	0.004
PRK06349	426	PRK06349, PRK06349, homoserine dehydrogenase; Prov	0.004

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  221 bits (567), Expect = 5e-71
 Identities = 82/155 (52%), Positives = 111/155 (71%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RHT+SV V +E G+++R+AG+F+RRGYNIESL VG   D  L   TIV SG E+V+ Q+ 
Sbjct: 2   RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQIT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL++V+KV D++ E HVEREL L+K+        EI+ L DIFRAK+VD++  +LT
Sbjct: 62  KQLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IEVTGD  K+ A    L  +GIKE+ RTG +A+ R
Sbjct: 122 IEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGR 156

Length = 161

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  209 bits (535), Expect = 3e-66
 Identities = 96/157 (61%), Positives = 125/157 (79%), Gaps = 2/157 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQV 135
            +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+
Sbjct: 1   MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQL 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QL KLVN++KV+DI+N P VERELMLIK+N ++ T PEI+ +  IFRAKVVD+SE +L
Sbjct: 61  TKQLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
            +EVTGDPGK+VA+++ L KFGI E+ARTGKIAL RE
Sbjct: 121 ILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRE 157

Length = 174

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  191 bits (488), Expect = 4e-59
 Identities = 85/168 (50%), Positives = 124/168 (73%), Gaps = 12/168 (7%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV +  GVL  + G+ +RRG+NI+SLAVGPAE++G+S IT VVPG D +I +L +
Sbjct: 3   HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTK 62

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KL+++ +VQDIT++P  EREL+LIKI VN+  R ++L+IA+IFRA+ VD+S+ ++ L
Sbjct: 63  QLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLIL 122

Query: 435 E------------RLLEPYGICEVARTGRVALVRESGVDSTYLRGYPL 470
           E            +LLE +GI E+ARTG++AL+RES V++ YLR    
Sbjct: 123 EVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKVNTEYLRYISE 170

Length = 174

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  184 bits (470), Expect = 9e-57
 Identities = 80/156 (51%), Positives = 107/156 (68%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH +SV V +E G+++R+AG+F RRG+NIESL VG   D  L   TIVV G ++VL Q+ 
Sbjct: 1   RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQIT 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKLV+VIKV D++    VEREL L+K++       EI+ L +IFR ++VD+S  + T
Sbjct: 61  KQLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           +EVTGD  K+ A    L  FGIKE+ARTGK AL R 
Sbjct: 121 VEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRG 156

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  183 bits (468), Expect = 3e-56
 Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 12/158 (7%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV N PGVL+ V G+ SRRGYNI+SL VGP E  GLS +T V  G ++ I ++ +
Sbjct: 3   HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITK 62

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KLID+ +V D+T     EREL L+K+  +   R ++L +A IFRA+ VDV+  ++T+
Sbjct: 63  QLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTI 122

Query: 435 E------------RLLEPYGICEVARTGRVALVRESGV 460
           E             LL PYGI E+ RTG VA+ R   +
Sbjct: 123 EVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEKI 160

Length = 161

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  183 bits (466), Expect = 5e-56
 Identities = 81/158 (51%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
             R  +S+ V +E G+++R+ G+F+RRGYNIESL VG      L   TIVVSG E+VL Q
Sbjct: 2   PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQ 61

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           +++QLNKL++V+KV D+++EPHVEREL LIK++ + S   EI  + +IFRA VVD+S  +
Sbjct: 62  IIKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPES 121

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           LTIE+TGD  K+ A  R L  +GI E+ARTG +A+ R 
Sbjct: 122 LTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRG 159

Length = 163

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  153 bits (388), Expect = 2e-44
 Identities = 76/158 (48%), Positives = 102/158 (64%), Gaps = 12/158 (7%)

Query: 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKL 372
               LS+LV N PGVL+ VTG+ SRRGYNI+SL VGP E  GLS IT VV G ++ + ++
Sbjct: 3   MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQI 62

Query: 373 VQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTI 432
           ++ L+KLID+ +V D+T  P  EREL LIK++   + R ++  I +IFRA  VDVS  ++
Sbjct: 63  IKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESL 122

Query: 433 TLE------------RLLEPYGICEVARTGRVALVRES 458
           T+E            RLL PYGI E+ARTG VA+ R  
Sbjct: 123 TIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGP 160

Length = 163

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  147 bits (373), Expect = 2e-42
 Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 12/156 (7%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           H LS+LV N PGVL+ V G+ +RRG+NI+SL VGP E   LS +T VV G D+ + ++ +
Sbjct: 2   HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITK 61

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KL+D+ +V D+T     EREL L+K++     R +++ +  IFR R VDVS  + T+
Sbjct: 62  QLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTV 121

Query: 435 E------------RLLEPYGICEVARTGRVALVRES 458
           E             LL P+GI EVARTG+ AL R  
Sbjct: 122 EVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score =  106 bits (268), Expect = 2e-28
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVE 137
           HT+SV V +E G++NRI+G+FARRG+NIESL VG   +   +  TIVV G + V+ Q+V+
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 138 QLNKLVNVIKVE 149
           QLNKLV+V+KV 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score =  106 bits (267), Expect = 3e-28
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query: 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217
           EREL L+K+     T  EI+ + DIFRAK+VD++  + TIE+TGDP K+ A    L  FG
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIELTGDPEKIDAFIDLLRPFG 60

Query: 218 IKELARTGKIALRRE 232
           I E+ RTG +A+ R 
Sbjct: 61  ILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score = 99.1 bits (248), Expect = 1e-25
 Identities = 39/72 (54%), Positives = 55/72 (76%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV N PGVLN ++G+ +RRG+NI+SL VGP E  G+S IT VV G D+ I ++V+
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 375 LLHKLIDLHEVQ 386
            L+KL+D+ +V 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score = 88.3 bits (220), Expect = 1e-21
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 12/75 (16%)

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG 442
           EREL L+K+      R ++L IA IFRA+ VDV+  + T+E             LL P+G
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIELTGDPEKIDAFIDLLRPFG 60

Query: 443 ICEVARTGRVALVRE 457
           I EV RTG VA+ R 
Sbjct: 61  ILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 60.6 bits (148), Expect = 5e-12
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G++ RI  V  RRG+NI SL +    D  +   T+ V G ER +  +V QL KL++V
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 146 IKV 148
           ++V
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDL 382
           + PGVL  +  V+ RRG+NI SL +   E +G++ +T  V G +  +  LV  L KLID+
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 383 HEV 385
            EV
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLV 373
           SHT S++++N P VL  ++G+ +RRGY I SL +   +  G+S +      T+     LV
Sbjct: 2   SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLV 61

Query: 374 QLLHKLIDLHEVQDI 388
             L KLI++ +V  +
Sbjct: 62  SQLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ 138
             + V V D  G++  + G  A RG NIES++   + DKA +  IVV   E  L   +E 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

Query: 139 LNKLVN 144
           L KL+ 
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVE 137
           HT S+ + ++  ++ RI+G+FARRGY I SL +        +   +    TE     +V 
Sbjct: 3   HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVS 62

Query: 138 QLNKLVNVIKVEDI 151
           QL KL+NV++V  +
Sbjct: 63  QLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L + V + PG+L  V G ++ RG NI+S++   +  +       VV   +E +   ++
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVD-EEDLEAALE 59

Query: 375 LLHKLID 381
            L KL+ 
Sbjct: 60  ALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVEQL 139
           ++V   D  G++ ++  V A  G NI S+      +  +A   IVV G    L +++E L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           L++   + PG+L  V  V++  G NI S+    +   G + I  VV G  + + KL++ L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Query: 377 H 377
            
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153155 cd04883, ACT_AcuB, C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG 354
           V + PG L  +  +   RG NI S+ V P+++E 
Sbjct: 8   VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEED 41

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---ALFTIVVSGTERVLRQVVE 137
            + +   D  G++  I  V +    NI S+      +       T+ V   E  L +++ 
Sbjct: 6   DLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKDLEH-LARLIR 64

Query: 138 QLNKLVNVIKVE 149
           +L K+  VI VE
Sbjct: 65  KLRKIPGVISVE 76

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 86  VGDESGIINRIAGVFARRGYNIES---LAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142
           V +  G+++ + G+FARR +N+E    L +  + DK+   ++V+  +R L Q++ Q+ KL
Sbjct: 15  VRNHPGVMSHVCGLFARRAFNVEGILCLPIQ-DGDKSRIWLLVNDDQR-LEQMISQIEKL 72

Query: 143 VNVIKVEDISNEPHV 157
            +V+KV    ++P +
Sbjct: 73  EDVLKVRRNQSDPTM 87

Length = 96

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL 375
            L + V N PGV++ V G+ +RR +N++ +   P +    S I  +V   D+ + +++  
Sbjct: 10  ILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-NDDQRLEQMISQ 68

Query: 376 LHKLIDLHEVQ 386
           + KL D+ +V+
Sbjct: 69  IEKLEDVLKVR 79

Length = 96

>gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G+I ++  +    G NI ++ VG       A   + V     V  +V+E+L  L  +
Sbjct: 8   DVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGI 65

Query: 146 IKVEDI 151
           I+V  I
Sbjct: 66  IRVRLI 71

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|184144 PRK13562, PRK13562, acetolactate synthase 1 regulatory subunit; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQV 135
              + + V D+   +NRI   F R  YNI++L V  +    +  + +      +  L  +
Sbjct: 2   TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHIL 61

Query: 136 VEQLNKLVNVIKV--EDIS 152
           +++L + +NV+ V   D+ 
Sbjct: 62  IKKLKQQINVLTVECYDLV 80

Length = 84

>gnl|CDD|235783 PRK06349, PRK06349, homoserine dehydrogenase; Provisional

 Score = 38.9 bits (92), Expect = 0.004
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV---SGTERVLRQV 135
           ++ + + V D+ G++ +IA +FA  G +IES+ +          IV+     +E  LR  
Sbjct: 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESI-LQKGAGGEGAEIVIVTHETSEAALRAA 406

Query: 136 VEQLNKL------VNVIKVE 149
           +  +  L       +VI+VE
Sbjct: 407 LAAIEALDVVLGIPSVIRVE 426

Length = 426

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	472
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	100.0
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	100.0
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	99.98
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.98
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.97
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.96
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.96
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.96
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.95
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.93
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.92
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.89
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.83
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.77
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	98.94
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	98.93
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.88
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.81
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.75
PRK06349	426	homoserine dehydrogenase; Provisional	98.63
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.62
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.62
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.61
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.55
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.5
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.49
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.46
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.43
PRK06349	426	homoserine dehydrogenase; Provisional	98.42
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.41
PRK08577	136	hypothetical protein; Provisional	98.37
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.32
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.3
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.3
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.28
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.27
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.23
PRK08577	136	hypothetical protein; Provisional	98.22
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.21
PRK11589	190	gcvR glycine cleavage system transcriptional repre	98.18
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.16
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.15
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	98.14
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	98.12
PRK00194	90	hypothetical protein; Validated	98.06
PRK00194	90	hypothetical protein; Validated	98.06
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	98.06
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.04
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	98.03
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	98.03
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	98.0
PRK04435	147	hypothetical protein; Provisional	97.98
cd02116	60	ACT ACT domains are commonly involved in specifica	97.96
PRK04435	147	hypothetical protein; Provisional	97.96
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.95
COG4747	142	ACT domain-containing protein [General function pr	97.95
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.9
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.9
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.89
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.87
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.87
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	97.86
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.85
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.82
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.81
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.8
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.79
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.76
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.74
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.74
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.73
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.7
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.67
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.6
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.53
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.52
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.52
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	97.5
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.49
cd02116	60	ACT ACT domains are commonly involved in specifica	97.47
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.47
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.47
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.42
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.41
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.39
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.36
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.32
PRK07431	587	aspartate kinase; Provisional	97.32
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	97.31
PRK05092	931	PII uridylyl-transferase; Provisional	97.29
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	97.29
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.29
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.25
COG4492	150	PheB ACT domain-containing protein [General functi	97.24
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.23
COG4492	150	PheB ACT domain-containing protein [General functi	97.2
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.18
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.16
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.15
COG4747	142	ACT domain-containing protein [General function pr	97.08
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	97.05
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	96.99
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.99
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.99
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	96.98
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.96
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.96
PRK03381	774	PII uridylyl-transferase; Provisional	96.91
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	96.85
COG1707	218	ACT domain-containing protein [General function pr	96.8
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	96.77
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.75
PRK03059	856	PII uridylyl-transferase; Provisional	96.65
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.65
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.64
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.63
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.62
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.6
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	96.6
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.59
PRK00275	895	glnD PII uridylyl-transferase; Provisional	96.59
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.55
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.52
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.51
PRK05007	884	PII uridylyl-transferase; Provisional	96.42
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.25
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.24
COG1707	218	ACT domain-containing protein [General function pr	96.22
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	96.19
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.15
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.12
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.1
PRK07334	403	threonine dehydratase; Provisional	96.07
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	96.07
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.06
PRK07431	587	aspartate kinase; Provisional	96.01
PRK11589	190	gcvR glycine cleavage system transcriptional repre	95.99
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.94
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	95.91
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	95.9
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.88
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.88
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.85
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.85
PRK04374	869	PII uridylyl-transferase; Provisional	95.83
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.7
PRK11899	279	prephenate dehydratase; Provisional	95.68
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.58
COG2150	167	Predicted regulator of amino acid metabolism, cont	95.56
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.54
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	95.5
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	95.42
PRK06635	404	aspartate kinase; Reviewed	95.3
PRK07334	403	threonine dehydratase; Provisional	95.29
PRK06382	406	threonine dehydratase; Provisional	95.29
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.27
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.24
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	95.09
PRK11899	279	prephenate dehydratase; Provisional	95.09
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.06
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	95.05
PRK08198	404	threonine dehydratase; Provisional	94.99
PRK06382	406	threonine dehydratase; Provisional	94.96
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	94.85
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.81
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	94.73
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	94.66
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	94.65
PRK06545	359	prephenate dehydrogenase; Validated	94.65
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	94.61
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.55
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	94.5
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.5
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.45
COG2061	170	ACT-domain-containing protein, predicted allosteri	94.4
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.38
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	94.37
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	94.24
PRK06545	359	prephenate dehydrogenase; Validated	94.12
PRK08198	404	threonine dehydratase; Provisional	93.89
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.88
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	93.84
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.7
PRK08818	370	prephenate dehydrogenase; Provisional	93.68
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	93.51
PRK11898	283	prephenate dehydratase; Provisional	93.46
PRK12483	521	threonine dehydratase; Reviewed	93.42
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	93.33
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.16
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.14
PRK03059	856	PII uridylyl-transferase; Provisional	93.1
PRK08818	370	prephenate dehydrogenase; Provisional	93.08
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	93.07
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	93.07
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	93.01
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	92.75
COG2150	167	Predicted regulator of amino acid metabolism, cont	92.7
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	92.65
PRK11898	283	prephenate dehydratase; Provisional	92.32
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	92.3
PRK05092	931	PII uridylyl-transferase; Provisional	92.3
COG2061	170	ACT-domain-containing protein, predicted allosteri	92.17
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	92.02
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	91.91
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	91.85
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	91.84
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	91.56
PRK08210	403	aspartate kinase I; Reviewed	91.54
PLN02317	382	arogenate dehydratase	91.44
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	91.31
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	91.29
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	91.04
PRK03381	774	PII uridylyl-transferase; Provisional	90.87
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	90.87
PRK05007	884	PII uridylyl-transferase; Provisional	90.77
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	90.75
COG3830	90	ACT domain-containing protein [Signal transduction	90.73
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	90.49
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	90.48
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	90.45
PRK15385	225	magnesium transport protein MgtC; Provisional	90.44
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	90.23
PRK01759	854	glnD PII uridylyl-transferase; Provisional	89.75
PLN02317	382	arogenate dehydratase	89.29
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	89.26
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	89.2
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	89.06
PLN02550	591	threonine dehydratase	88.82
PRK02047	91	hypothetical protein; Provisional	88.82
PRK00275	895	glnD PII uridylyl-transferase; Provisional	88.69
COG3830	90	ACT domain-containing protein [Signal transduction	88.68
PF04350	144	PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.	88.53
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	88.45
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	88.39
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	88.23
PRK08639	420	threonine dehydratase; Validated	88.16
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	87.91
PRK09034	454	aspartate kinase; Reviewed	87.82
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	87.72
TIGR02079	409	THD1 threonine dehydratase. This model represents	87.52
PRK15385	225	magnesium transport protein MgtC; Provisional	87.39
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	87.32
PRK08526	403	threonine dehydratase; Provisional	86.63
PRK04374	869	PII uridylyl-transferase; Provisional	86.32
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	86.08
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	85.76
PRK01759	854	glnD PII uridylyl-transferase; Provisional	85.59
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	85.55
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	85.48
PF09383	76	NIL: NIL domain; InterPro: IPR018449 This domain i	85.46
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	85.46
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	85.29
PRK09084	448	aspartate kinase III; Validated	84.74
PRK09224	504	threonine dehydratase; Reviewed	84.61
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	84.25
PRK06291	465	aspartate kinase; Provisional	84.18
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	84.0
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	83.75
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	83.28
PRK00907	92	hypothetical protein; Provisional	83.14
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	83.13
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	82.96
PRK06635	404	aspartate kinase; Reviewed	82.86
PRK14434	92	acylphosphatase; Provisional	82.03
PRK12483	521	threonine dehydratase; Reviewed	81.74
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	81.74
PLN02551	521	aspartokinase	81.72
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	81.63
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	81.49
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	80.62
PRK04998	88	hypothetical protein; Provisional	80.43
PLN02550	591	threonine dehydratase	80.21

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=6.2e-52  Score=382.70  Aligned_cols=157  Identities=52%  Similarity=0.827  Sum_probs=153.2

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~  155 (472)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||+++||++.++|+.|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            5899999999999999999999999999999999999997764  99999999999999999999999999999999999


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 012043          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (472)
Q Consensus       156 ~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~  234 (472)
                      +|+|||+||||++++++|.+|++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||.+||.||..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~  159 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK  159 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999964

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=1.9e-51  Score=378.03  Aligned_cols=155  Identities=52%  Similarity=0.801  Sum_probs=151.5

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~  156 (472)
                      +|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||+++||++.++||.|||+||+||++|.+++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            599999999999999999999999999999999999997764  999999999999999999999999999999999999


Q ss_pred             hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 012043          157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (472)
Q Consensus       157 V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~  233 (472)
                      |+||||||||++++++|.+|++++++|||+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||.
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~  157 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP  157 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999983

acetohydroxyacid synthase is a synonym.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=1.2e-51  Score=385.04  Aligned_cols=167  Identities=59%  Similarity=0.877  Sum_probs=159.1

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~  155 (472)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||++.++++.++||.+||+||+||++|+++++++
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            5899999999999999999999999999999999999999975  99999999888999999999999999999999999


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 012043          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG  235 (472)
Q Consensus       156 ~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~~  235 (472)
                      +|+||||||||++++++|.+|++++++|||||||+++++++||+||+++|||+|+++|+||||+|++|||++||.||+..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~  160 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV  160 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCccccccc
Q 012043          236 DTAPFWNFS  244 (472)
Q Consensus       236 ~~~~~~~~~  244 (472)
                      ...++.++|
T Consensus       161 ~~~~l~~~~  169 (174)
T CHL00100        161 NTEYLRYIS  169 (174)
T ss_pred             hHHHHHhhh
Confidence            665554433

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-51  Score=377.42  Aligned_cols=159  Identities=50%  Similarity=0.776  Sum_probs=155.3

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      +|+|+++++++|+||+|+||+|||+||||||+||+|++||+++  +|||++.||+..+|||.|||+||+||++|.+++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            5899999999999999999999999999999999999999997  59999999999999999999999999999999999


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 012043          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (472)
Q Consensus       155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~  234 (472)
                      ++++|||+|+||++++..|.|+.+++++|||+|||++++++++|+||+++|+++||+.|+||||+|++|||.+||.||++
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~  161 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK  161 (163)
T ss_pred             chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999976


Q ss_pred             C
Q 012043          235 G  235 (472)
Q Consensus       235 ~  235 (472)
                      .
T Consensus       162 ~  162 (163)
T COG0440         162 K  162 (163)
T ss_pred             C
Confidence            4

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-52  Score=402.00  Aligned_cols=236  Identities=51%  Similarity=0.734  Sum_probs=220.2

Q ss_pred             cccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        74 ~~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      ..+.++|+|+++|.|+||||+||+|+|++||||||||.||.||++..  ||||+.|+|..++|.++||+||++|++|.|+
T Consensus        72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy  151 (309)
T KOG2663|consen   72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY  151 (309)
T ss_pred             cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence            46789999999999999999999999999999999999999999975  8999999999999999999999999999999


Q ss_pred             CCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 012043          152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR  231 (472)
Q Consensus       152 t~~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~R  231 (472)
                      +.+++|+|||||+||+         +...+.|+|  ||..++++++|+|||++   ++...|++|+|-|++|||. |+.|
T Consensus       152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr  216 (309)
T KOG2663|consen  152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR  216 (309)
T ss_pred             CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence            9999999999999998         899999999  99999999999999999   7889999999999999999 8999


Q ss_pred             CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCC
Q 012043          232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG  311 (472)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (472)
                      .+++..+++|+|+++.||++.+..+...+.+..            +.+|||||++++.++         +| +++++.+|
T Consensus       217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp---------~g-vle~~rSG  274 (309)
T KOG2663|consen  217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDP---------KG-VLEEDRSG  274 (309)
T ss_pred             HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCc---------cc-chhhcccc
Confidence            999999999999999999999888877755432            678999999997443         22 66889999


Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g  364 (472)
                      ++.||++.+++|-|                  ++++|+.|.+++||||.+.+|
T Consensus       275 l~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg  309 (309)
T KOG2663|consen  275 LRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG  309 (309)
T ss_pred             hhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence            99999999999999                  999999999999999988765

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=2.7e-48  Score=358.52  Aligned_cols=147  Identities=49%  Similarity=0.778  Sum_probs=144.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCch
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP  392 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~  392 (472)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++++|||+++++|++.++|++|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCCC
Q 012043          393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESG  459 (472)
Q Consensus       393 ~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~~  459 (472)
                      +|+|||+||||++++++|.+|++++++|||+|||++++++++|            ++|+||||+|++|||++||.||++
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~  159 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK  159 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence            9999999999999999999999999999999999999999999            999999999999999999999974

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=9.6e-49  Score=365.46  Aligned_cols=157  Identities=54%  Similarity=0.894  Sum_probs=153.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCch
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP  392 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~  392 (472)
                      |+|+|+++++|+||+|+||+++|+||||||+||++++++++++|||||+++++++.++||.+||+||+||++|.++++.+
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCCCc
Q 012043          393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESGV  460 (472)
Q Consensus       393 ~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~~~  460 (472)
                      +|+|||+||||++++++|.+|++++++|||||||++++++++|            ++|+||||+|++|||++||.|++..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~  160 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV  160 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence            9999999999999999999999999999999999999999999            9999999999999999999999988


Q ss_pred             cccccccCC
Q 012043          461 DSTYLRGYP  469 (472)
Q Consensus       461 ~~~~l~~~~  469 (472)
                      ...||..||
T Consensus       161 ~~~~l~~~~  169 (174)
T CHL00100        161 NTEYLRYIS  169 (174)
T ss_pred             hHHHHHhhh
Confidence            888998876

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-48  Score=358.22  Aligned_cols=148  Identities=51%  Similarity=0.804  Sum_probs=145.5

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCc
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~  391 (472)
                      +|+|+||++|+|+||||+|++|||+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.|++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCCC
Q 012043          392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESG  459 (472)
Q Consensus       392 ~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~~  459 (472)
                      ++++|||+|+||++++..|.|+.+++++|||+|+|++++++++|            ++|+||||+|++|||.+||.||++
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~  161 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK  161 (163)
T ss_pred             chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence            99999999999999999999999999999999999999999999            999999999999999999999975

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=9.9e-48  Score=353.45  Aligned_cols=145  Identities=47%  Similarity=0.774  Sum_probs=142.6

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchH
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF  393 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~  393 (472)
                      +|+|+++++|+||+|+||+++|+||||||+||++++++++++||||+++++|++.++||.|||+||+||++|.|++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCC
Q 012043          394 AERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRES  458 (472)
Q Consensus       394 V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~  458 (472)
                      |+||||||||++++++|.+|++++++|||+|||++++++++|            ++|+||||+|++|||++||.||.
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~  157 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP  157 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence            999999999999999999999999999999999999999999            99999999999999999999973

acetohydroxyacid synthase is a synonym.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=100.00  E-value=1e-32  Score=235.95  Aligned_cols=90  Identities=23%  Similarity=0.377  Sum_probs=85.6

Q ss_pred             CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       309 ~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      +..+.+|+||++|+|+||||+||+|||+||||||+||+||+||+|++|||||++. +++.++||+|||+||+||++|.++
T Consensus         3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l   81 (96)
T PRK08178          3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRN   81 (96)
T ss_pred             CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEEC
Confidence            4456789999999999999999999999999999999999999999999999999 568999999999999999999999


Q ss_pred             CCchHHHHhhh
Q 012043          389 THLPFAERELI  399 (472)
Q Consensus       389 t~~~~V~REL~  399 (472)
                      ++++.|++|+.
T Consensus        82 ~~~~~v~~e~~   92 (96)
T PRK08178         82 QSDPTMFNKIA   92 (96)
T ss_pred             CCchhHHHHHH
Confidence            99999999985

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=99.98  E-value=9.2e-34  Score=276.27  Aligned_cols=136  Identities=40%  Similarity=0.613  Sum_probs=129.7

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCC
Q 012043          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH  390 (472)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~  390 (472)
                      ..++|+|+++|.|+|||||||+|+|+|||||||||.||-+|++.+||||||+.|+|+.++|.++||+||++|++|.|+|.
T Consensus        74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~  153 (309)
T KOG2663|consen   74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTN  153 (309)
T ss_pred             cccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh---------HhhccCCcEEEeecceeeeecCC
Q 012043          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE---------RLLEPYGICEVARTGRVALVRES  458 (472)
Q Consensus       391 ~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE---------~lL~pyGI~EvaRTG~vAl~Rg~  458 (472)
                      +++|+|||||+||+         +-..+.|||  ||...+++|+|         .-|+.++|-|.+|||. |+-|..
T Consensus       154 e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsgal~tnlkkkq~~e~v~tak-allrlk  218 (309)
T KOG2663|consen  154 EPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSGALVTNLKKKQIHEIVRTAK-ALLRLK  218 (309)
T ss_pred             ChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCchHHHhhHHHhccchhhccHH-HHHHHh
Confidence            99999999999998         678999999  99999999999         6688999999999999 666653

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.98  E-value=1.7e-32  Score=229.51  Aligned_cols=80  Identities=28%  Similarity=0.395  Sum_probs=76.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEE--ecC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ--DIT  389 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~--dlt  389 (472)
                      |+|+||++|+|+||||+||+|+|+||||||+||+||+||+|++||||||++ ||++.++||+|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            589999999999999999999999999999999999999999999999998 99999999999999999999999  777


Q ss_pred             Cch
Q 012043          390 HLP  392 (472)
Q Consensus       390 ~~~  392 (472)
                      +.+
T Consensus        81 ~~~   83 (84)
T PRK13562         81 DNE   83 (84)
T ss_pred             ccC
Confidence            653

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.97  E-value=9.1e-31  Score=215.59  Aligned_cols=76  Identities=34%  Similarity=0.568  Sum_probs=74.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      |+|+|+++|+|+||||+||+|+|+||||||+||+||+||++++|||||++.||++.++||+|||+||+||++|.|+
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999985

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.96  E-value=3.6e-29  Score=214.13  Aligned_cols=85  Identities=24%  Similarity=0.448  Sum_probs=80.9

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      +.+|+||++|+|+||||+||+|||+||||||+||+||+|++++  +|||++. +++.++||+|||+||+||++|.+++++
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~~   84 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQSD   84 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCCc
Confidence            5689999999999999999999999999999999999999997  5999998 568999999999999999999999999


Q ss_pred             hhhhhhee
Q 012043          155 PHVERELM  162 (472)
Q Consensus       155 ~~V~RELa  162 (472)
                      +.|++|+.
T Consensus        85 ~~v~~e~~   92 (96)
T PRK08178         85 PTMFNKIA   92 (96)
T ss_pred             hhHHHHHH
Confidence            99999974

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.96  E-value=3.9e-29  Score=209.33  Aligned_cols=78  Identities=27%  Similarity=0.460  Sum_probs=74.0

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhhHHHHHHHHhcCceeeEEE--ecC
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS  152 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~--dlt  152 (472)
                      |+|+||++|+|+||||+||+|+|+||||||+||+||+||+|+  +|||+++ ||++.++||+|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            589999999999999999999999999999999999999998  4999998 99999999999999999999999  777


Q ss_pred             Cch
Q 012043          153 NEP  155 (472)
Q Consensus       153 ~~~  155 (472)
                      +.+
T Consensus        81 ~~~   83 (84)
T PRK13562         81 DNE   83 (84)
T ss_pred             ccC
Confidence            653

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.96  E-value=9.7e-29  Score=203.48  Aligned_cols=75  Identities=25%  Similarity=0.375  Sum_probs=72.6

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d  387 (472)
                      ||+|+|+++|+|+||||+||+|||+||||||+||+||+|+++++||||+++. +++.++||.|||+||+||++|..
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence            6899999999999999999999999999999999999999999999999995 89999999999999999999974

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.95  E-value=9.5e-28  Score=197.73  Aligned_cols=74  Identities=34%  Similarity=0.558  Sum_probs=71.4

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      |+|+|+++|+|+||||+||+|+|+||||||+||++|+||+++  +|||++.||++.++||.|||+||+||++|.++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            589999999999999999999999999999999999999998  49999999999999999999999999999985

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.93  E-value=5.4e-26  Score=187.22  Aligned_cols=73  Identities=27%  Similarity=0.436  Sum_probs=69.3

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~d  150 (472)
                      ||+|+|+++|+|+||||+||+|+|+||||||+||++|+|++++.  |||++ ++++.++||.|||+||+||++|+.
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence            68999999999999999999999999999999999999999974  99999 589999999999999999999974

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.92  E-value=1.2e-25  Score=183.95  Aligned_cols=75  Identities=47%  Similarity=0.753  Sum_probs=70.8

Q ss_pred             hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 012043          158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (472)
Q Consensus       158 ~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg  232 (472)
                      +||||||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg   75 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG   75 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence            699999999998899999999999999999999999999999999999999999999999999999999999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.89  E-value=3.5e-23  Score=164.03  Aligned_cols=63  Identities=59%  Similarity=0.920  Sum_probs=59.2

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V  385 (472)
                      |+||+|+||+++|+||||||+||+|+++++++++||||++.|+++.++||++||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999999999999999999999999999999999987

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.83  E-value=7.8e-21  Score=150.63  Aligned_cols=61  Identities=56%  Similarity=0.950  Sum_probs=56.3

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV  148 (472)
                      |+||+|+||+++|+||||||+||+++++++++.  |||+++|+++.++||++||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999985  9999999999999999999999999987

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.77  E-value=1.5e-19  Score=147.97  Aligned_cols=63  Identities=56%  Similarity=0.897  Sum_probs=59.4

Q ss_pred             HHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecC
Q 012043          395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRE  457 (472)
Q Consensus       395 ~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg  457 (472)
                      +|||+||||+++.++|.+|+++++.|+|+|||++++++++|            ++|+||||+|++|||++||.||
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg   75 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG   75 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence            58999999999889999999999999999999999999999            9999999999999999999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=98.94  E-value=2.8e-09  Score=89.26  Aligned_cols=77  Identities=23%  Similarity=0.309  Sum_probs=73.1

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      ||.|.+.+.+..+||.|.||.++-++|||-+.+++..+..+.+.-.|.++|++| +.++-|..||+||.||..|+..-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-R~~~lL~~QLeKl~Dv~~V~i~~   77 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-RSVDLLTSQLEKLYDVAHVEITQ   77 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-CChHHHHHHHHHHccceeEEEee
Confidence            789999999999999999999999999999999999999999999999999986 89999999999999999997543

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=98.93  E-value=3e-09  Score=89.12  Aligned_cols=75  Identities=20%  Similarity=0.311  Sum_probs=69.1

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      ||+|.+.+.+..+||.|.||.++-++|||-+.+++.....|.+.  +.++|++ ++.++-|..||+||.||..|+-.-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~   77 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ   77 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence            78999999999999999999999999999999999999888876  8889986 668999999999999999998543

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.88  E-value=8.7e-09  Score=78.53  Aligned_cols=66  Identities=24%  Similarity=0.422  Sum_probs=59.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID  381 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLid  381 (472)
                      |+|.+.+.|+||+|.+|+++|+++|+||.++......+. ...+.++...++...+++.+.|+++.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG   66 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence            789999999999999999999999999999999999886 666666666788899999999998764

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.81  E-value=4.2e-08  Score=74.80  Aligned_cols=71  Identities=55%  Similarity=0.918  Sum_probs=63.5

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V  385 (472)
                      |+|.+.+.|+||+|.+++.+|+..|+||+++...+....+..++.+.+......+++++++|+++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            79999999999999999999999999999999876535688888888875438899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.75  E-value=4.1e-08  Score=74.82  Aligned_cols=65  Identities=28%  Similarity=0.460  Sum_probs=56.2

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhhHHHHHHHHhcCce
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVN  144 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gdd~~ieQI~kQL~KLvd  144 (472)
                      |+|.+.+.|+||+|.+|+.+|+++|+||.++......+. ..+.++...+....+++.+.|+++.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG   66 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence            789999999999999999999999999999999998874 34555556678889999999988753

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.63  E-value=8.6e-08  Score=100.69  Aligned_cols=73  Identities=19%  Similarity=0.260  Sum_probs=67.3

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      ..+|.|++.++|+||||++|+++|+++|+||+|+...+++. +.++++++++ .++..++++++||+||.+|.+.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            45799999999999999999999999999999999987755 8899999999 7889999999999999998764

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.62  E-value=4.8e-07  Score=73.13  Aligned_cols=73  Identities=26%  Similarity=0.419  Sum_probs=63.8

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEE
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ  386 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~  386 (472)
                      ..+|.|...|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .|-+.+++++++|+++-+|.+|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence            56899999999999999999999999999999999986678888888877 67889999999999999999986

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.62  E-value=1.7e-07  Score=71.01  Aligned_cols=71  Identities=25%  Similarity=0.417  Sum_probs=63.1

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      +|.+.+.|+||+|++|+.+|+.+|+||.++.+.+.+..+...+++.++..  ..++++++|+++-+|.+|..+
T Consensus         1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            36789999999999999999999999999999877656899999998653  588999999999999999764

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.61  E-value=3.2e-07  Score=69.90  Aligned_cols=69  Identities=59%  Similarity=0.947  Sum_probs=58.2

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV  148 (472)
                      |+|.+.+.|+||+|.+++.+|+..|+||.++........+  .+.+.+......+++++++|.++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            7899999999999999999999999999999987642233  36666653337899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.55  E-value=3.2e-07  Score=71.13  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=62.6

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      |.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++.+++. .+...+++++++|+++-+|.++
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~   72 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV   72 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence            5789999999999999999999999999999887655558888888776 5778899999999999888765

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.50  E-value=5.4e-07  Score=68.65  Aligned_cols=71  Identities=24%  Similarity=0.336  Sum_probs=62.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      ||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.+.+++.  .+++++++|+++-.|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            57899999999999999999999999999998775557888888888865  788999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.49  E-value=6.9e-07  Score=70.11  Aligned_cols=46  Identities=30%  Similarity=0.543  Sum_probs=39.8

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEE
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITT  360 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTI  360 (472)
                      +.|++.++|+||+|++|+.+|+++|+||+|+.+.+.+++.+.|+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence            4688999999999999999999999999999998887765555533

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.46  E-value=9.6e-07  Score=69.29  Aligned_cols=46  Identities=20%  Similarity=0.501  Sum_probs=40.4

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV  125 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV  125 (472)
                      +.|++.++|+||+|++|+.+|+++|+||+++.+.++++++.+.+.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence            4688999999999999999999999999999998887765566656

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.43  E-value=8.5e-07  Score=67.21  Aligned_cols=68  Identities=26%  Similarity=0.467  Sum_probs=58.0

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      |.+.+.|+||+|++|+.+|+.+|+||.++.+...+.  ...+++.++..  .+++++++|.++-+|.+|..+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            678999999999999999999999999999987652  33477777543  588999999999999999764

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.42  E-value=6.2e-07  Score=94.30  Aligned_cols=75  Identities=25%  Similarity=0.389  Sum_probs=65.7

Q ss_pred             cccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhhHHHHHHHHhcCceeeEE
Q 012043           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        74 ~~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV  148 (472)
                      .+...+|.|++.++|+||||++|+++|+++|+||+|+...++++. ..++|+++ .++..++++++||+||.+|.+.
T Consensus       343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            445678999999999999999999999999999999998876542 35888887 7899999999999999998764

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.41  E-value=2.5e-06  Score=68.90  Aligned_cols=71  Identities=27%  Similarity=0.401  Sum_probs=57.6

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~  149 (472)
                      -.-+|.|.+.|+||+|+.|+.+++..|.||.++++....+.+  .  +++.| .|-+.+++++++|+++-+|.+|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-KDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-SSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-CCHHHHHHHHHHHHCCCCeeEEE
Confidence            356899999999999999999999999999999999875333  3  44445 46789999999999999999986

>PRK08577 hypothetical protein; Provisional

Probab=98.37  E-value=3.7e-06  Score=75.42  Aligned_cols=76  Identities=24%  Similarity=0.382  Sum_probs=66.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEEEec
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      ..+.|.+.+.|+||+|+.|+.+|+..|+||.++++......+..++++++.-  .+..++++.++|+++-+|..|...
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            3689999999999999999999999999999999987766788888877763  236899999999999999999754

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.32  E-value=5.2e-06  Score=63.58  Aligned_cols=70  Identities=34%  Similarity=0.424  Sum_probs=61.8

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d  387 (472)
                      .|.+.+.|+||+|++++.+|+..++||.++...+. ..+..++++.+++. +.++.+.++|++.-+|..|+-
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            47788999999999999999999999999987654 36788899999876 788999999999999998864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.30  E-value=2.8e-06  Score=65.81  Aligned_cols=70  Identities=24%  Similarity=0.349  Sum_probs=58.0

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhhHHHHHHHHhcCceeeEEE
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~  149 (472)
                      |.|.+.+.|+||+|++++.+|++.|.||+++...+..+.+  .+.+++. .+...+++++++|.++-+|.++.
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~   73 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP   73 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence            5789999999999999999999999999999876554323  4666554 57788999999999998887653

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.30  E-value=2.7e-06  Score=64.82  Aligned_cols=69  Identities=30%  Similarity=0.425  Sum_probs=57.9

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      +|.+.+.|+||+|.+++.+|+..|+||.++.+.+..  +.+.+.|.+++.  .+++++++|.++-.|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            578999999999999999999999999999987643  233466777654  788999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.28  E-value=7.8e-06  Score=64.48  Aligned_cols=72  Identities=25%  Similarity=0.367  Sum_probs=60.0

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChH-HHHHHHHHHhcccceEEEEec
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE-SIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~-~ieQIvkQL~KLidVi~V~dl  388 (472)
                      .|.+...|+||+|++|+..+++.|.||.+++... ...+..++.+.+. .+.+ .+++++++|+++-+|.+|+-+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            5889999999999999999999999999998743 2246767777765 3444 899999999999999999754

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.27  E-value=1.4e-06  Score=67.56  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=56.9

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      |.+..+|+||+|++|+.++++.|+||.+++...+...+.+.+.++..  .+++++++|.++-+|++|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999876654444566666654  888999999999999999754

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.23  E-value=2.5e-06  Score=66.10  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      |-+..+|+||+|++|+.++++.|+||.+++...+.  +...+.+.++..  .+++++++|+++-+|++|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999876543  566666666644  888999999999999999754

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK08577 hypothetical protein; Provisional

Probab=98.22  E-value=9.6e-06  Score=72.77  Aligned_cols=76  Identities=28%  Similarity=0.331  Sum_probs=62.3

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEE--eCChhhHHHHHHHHhcCceeeEEEec
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV--~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      .-..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+  .+++++  +..+..+++++++|.++-+|..|...
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            34578999999999999999999999999999999987654333  345444  44346799999999999999999853

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.21  E-value=4.6e-06  Score=65.01  Aligned_cols=71  Identities=21%  Similarity=0.332  Sum_probs=61.1

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      +-+.+.|+||+|++|+.+|+++|.||.++.+.+.+..+.+.+.+-++++  ....+.+.|.++-+|++|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence            4568999999999999999999999999998887677888888888874  3468889999999999988763

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=98.18  E-value=5.6e-05  Score=72.39  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=49.9

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHH
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL  139 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL  139 (472)
                      .+++..|+++=.|+||+.++|+.+++..|.||...+...-...--+.+.+++....+.++...|
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L   68 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTL   68 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHH
Confidence            3467899999999999999999999999999998887766554335555677666665555555

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.16  E-value=1.5e-05  Score=61.01  Aligned_cols=69  Identities=28%  Similarity=0.388  Sum_probs=58.2

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d  150 (472)
                      .|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. ..++.+.++|++.-+|..|.-
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            477899999999999999999999999999876543 233477788876 688899999999999998864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.15  E-value=1.4e-05  Score=62.98  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      .|.+.+.|+||+|++|+..+++.|.||+.++..... ....  +++.+.+-+..+++++++|.++-+|.+|+-+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            588999999999999999999999999999874322 1122  4454554445999999999999999999754

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=98.14  E-value=1.7e-05  Score=62.58  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE  384 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~  384 (472)
                      +|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+.+. .+.+.++++++.|+++-+|.-
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~   69 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKV   69 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence            47899999999999999999999999999998654 368888888887 578899999999999999865

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=98.12  E-value=3.1e-05  Score=56.66  Aligned_cols=69  Identities=22%  Similarity=0.385  Sum_probs=59.3

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEE
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ  386 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~  386 (472)
                      |.+.+.|+||.+++++.+|+..++||.++...... .+...+.+.+. .+...++.+.++|.++..|.+|+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999987654 56777777766 46778999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK00194 hypothetical protein; Validated

Probab=98.06  E-value=6.7e-06  Score=68.00  Aligned_cols=73  Identities=22%  Similarity=0.287  Sum_probs=56.9

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hhHHHHHHHHhcCceeeEEE
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~~ieQI~kQL~KLvdVikV~  149 (472)
                      |+++++++.-.|+||++++|+++|+.+|.||..+......+.-.++++++.+.  ..++.+.+.|+++-+...++
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            56899999999999999999999999999999998775322223556666543  34688888888877776655

>PRK00194 hypothetical protein; Validated

Probab=98.06  E-value=6.6e-06  Score=68.00  Aligned_cols=73  Identities=15%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC--hHHHHHHHHHHhcccceEEEE
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEVQ  386 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd--e~~ieQIvkQL~KLidVi~V~  386 (472)
                      |++|++++.-.|+||++++|+++|+.+|.||..+.....  .+.--+.++++..  ...++.+.+.|+++-+...+.
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            568999999999999999999999999999999987764  3444454455533  234678888887777665554

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=98.06  E-value=3.7e-05  Score=61.72  Aligned_cols=70  Identities=11%  Similarity=0.284  Sum_probs=60.1

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      .|.|...|++|+|+.|+.+++..|+||.++.+...   +.-++++.+. +-..+++++++|+++-.|.+|+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999999653   4455666665 5678999999999999999998654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.04  E-value=1.5e-05  Score=62.07  Aligned_cols=69  Identities=23%  Similarity=0.437  Sum_probs=55.6

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      +-+...|+||+|++|+.+|+++|.||.++.+.+....+  .+.+.++++  ....+.+.|.++-+|++|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence            45688999999999999999999999999987764333  366667663  3458889999999999887653

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=98.03  E-value=1.4e-05  Score=60.38  Aligned_cols=46  Identities=22%  Similarity=0.516  Sum_probs=39.9

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG  127 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g  127 (472)
                      |++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+++.+.++.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46899999999999999999999999999999887 44557777764

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=98.03  E-value=2.6e-05  Score=61.02  Aligned_cols=61  Identities=23%  Similarity=0.374  Sum_probs=51.8

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      .+++.+.|+||.|.+++.+|+++|+||+++...+...++...+.+-+++++.  +++.+.|.+
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHH
Confidence            5788999999999999999999999999999888767888999999886443  466666665

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=98.00  E-value=1.7e-05  Score=59.94  Aligned_cols=47  Identities=26%  Similarity=0.512  Sum_probs=39.6

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g  364 (472)
                      |++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+...+-+.++.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence            46899999999999999999999999999999987 455555555553

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK04435 hypothetical protein; Provisional

Probab=97.98  E-value=4.8e-05  Score=69.82  Aligned_cols=74  Identities=31%  Similarity=0.411  Sum_probs=59.6

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEE--eCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV--~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      .-+|.+.+.|+||+|++|..++++.|.||.+++.....+. ..+++++  .+.+..+++|+.+|+++-.|.+|+-+.
T Consensus        69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            4589999999999999999999999999999987533222 2355554  444458999999999999999998654

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.96  E-value=4.5e-05  Score=52.84  Aligned_cols=59  Identities=31%  Similarity=0.442  Sum_probs=50.7

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL  376 (472)
                      |++...|+||++.++++.|+++|+||.++........+..++++.++..+ .++.++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46788999999999999999999999999998776677888999888654 777777765

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK04435 hypothetical protein; Provisional

Probab=97.96  E-value=9.1e-05  Score=68.00  Aligned_cols=76  Identities=26%  Similarity=0.372  Sum_probs=64.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEEecC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      +.-+|.+.+.|+||+|++|..++++.|.||.+++.... ..+...++++++  ..+..+++|+.+|+++-.|.+|+-+.
T Consensus        68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            56899999999999999999999999999999987432 246777777776  33348999999999999999998664

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.95  E-value=5.6e-05  Score=60.69  Aligned_cols=70  Identities=9%  Similarity=0.268  Sum_probs=58.4

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      .|.|...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +-..+++++++|.++-.|.+|+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999998653 2212555554 5667999999999999999998654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.95  E-value=2.6e-05  Score=70.48  Aligned_cols=124  Identities=19%  Similarity=0.278  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~  156 (472)
                      |+-.+||+++||+||-|..++..++..|+||..++.+.|.+.|++.++|+..+.. .++.+.               ..+
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-~~~Lee---------------~gF   64 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-HSVLEE---------------AGF   64 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-HHHHHH---------------CCc
Confidence            4557899999999999999999999999999999999999999999999865543 333222               223


Q ss_pred             hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccCCcE
Q 012043          157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG--------DPGKMVAVQRNLSKFGIK  219 (472)
Q Consensus       157 V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG--------~~~KIdafi~~L~~fGIl  219 (472)
                      +-|+--.+-|..+. .-..+-.|++.++..  |++-+++--=++-        ..+.+|..++.|+.-||.
T Consensus        65 ~Vr~~dVlaVEmeD-~PG~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~  132 (142)
T COG4747          65 TVRETDVLAVEMED-VPGGLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK  132 (142)
T ss_pred             EEEeeeEEEEEecC-CCCcHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence            33333333444431 111334444554432  2233332221111        346789999999999975

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.90  E-value=8.1e-05  Score=59.54  Aligned_cols=67  Identities=21%  Similarity=0.296  Sum_probs=56.2

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceE
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLH  383 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi  383 (472)
                      +.+.++|+||.|.+|...|+++|.||.+|.--|... ++-.++.|-+.|  ++..++++++.|++..+-+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~   71 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV   71 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence            567789999999999999999999999997777765 666677777888  5788999999999865533

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.90  E-value=5.2e-05  Score=57.81  Aligned_cols=63  Identities=22%  Similarity=0.281  Sum_probs=52.6

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPGT-DESIGKLVQLLHKL  379 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~gd-e~~ieQIvkQL~KL  379 (472)
                      |.+.+.|+||.|.+|+.+++..|.||.++...+..   ..+...+.+.+... .+.++++.+.|++.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            45788999999999999999999999999987754   36778888887754 47789999998774

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.89  E-value=8.4e-05  Score=58.57  Aligned_cols=66  Identities=17%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeE
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK  147 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVik  147 (472)
                      +|.+.+.|+||.|++|+..++..|.||.++...... .+.  +.+++. .+...++++++.|+++-+|.-
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~   69 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKV   69 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence            478999999999999999999999999999987643 343  555554 467789999999999999765

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.87  E-value=0.00013  Score=59.35  Aligned_cols=67  Identities=22%  Similarity=0.375  Sum_probs=53.8

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID  381 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd--e~~ieQIvkQL~KLid  381 (472)
                      .+|.+.+.|+||.|.+|..+|+++|+||.||..-|..+ .....+-+-+++.  +..++++.++|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            46788889999999999999999999999999888754 4444444445564  6788999999998544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.87  E-value=4.8e-05  Score=61.06  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=50.5

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeCCh-HHHHHHHHHHhccc
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPGTD-ESIGKLVQLLHKLI  380 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te----~~~iSRiTIVv~gde-~~ieQIvkQL~KLi  380 (472)
                      |++...|+||.+++|+.+|+++|.||.++.....+    ..+...|++.+...+ ..+.++.+.|+++-
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~   70 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC   70 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            78999999999999999999999999999996655    336677777776543 35777777776553

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=97.86  E-value=0.00011  Score=53.63  Aligned_cols=68  Identities=24%  Similarity=0.299  Sum_probs=55.6

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEe-CChhhHHHHHHHHhcCceeeEEE
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~  149 (472)
                      |.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.+.++|.++..|.+|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999987654 2233555554 45678999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.85  E-value=7.1e-05  Score=58.48  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      |.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.++++.+ ...+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence            689999999999999999999999999999987775322233456667643 366677776654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.82  E-value=8.4e-05  Score=58.06  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      |.+++.+.|+||.|.+++++|+..|+||.++......  ..+.+.++++.++ ..+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence            6899999999999999999999999999999877653  2456777787543 56677776654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.81  E-value=0.00012  Score=58.08  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=50.2

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH  383 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi  383 (472)
                      +++.+.|+||.|.+++.++++.|.||.|+...+.. +.+...+.+.+. .++..++.|.+.|++-.+|.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~~   70 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTVV   70 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccEE
Confidence            68899999999999999999999999999887752 334444444443 23345888888888765443

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.80  E-value=0.00015  Score=58.86  Aligned_cols=65  Identities=22%  Similarity=0.385  Sum_probs=51.8

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEE--EEEEeCC--hhhHHHHHHHHhcCce
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALF--TIVVSGT--ERVLRQVVEQLNKLVN  144 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~i--TIVV~gd--d~~ieQI~kQL~KLvd  144 (472)
                      ..|.+.+.|+||.|.+|..+|+++|+||.|+..-+..+. ..+  -+-++|.  +..++++.++|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            367888899999999999999999999999998887653 333  4445664  6778888899887544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.79  E-value=0.00011  Score=57.38  Aligned_cols=59  Identities=31%  Similarity=0.454  Sum_probs=46.5

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhc
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      .+++.+.|+||.|.+++.+|+++|+||+++........+  .+.|.+++++  .+++.+.|.+
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence            578999999999999999999999999999887764444  3677776544  2466666654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.76  E-value=4.1e-05  Score=63.38  Aligned_cols=69  Identities=20%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhcCceeeEEE
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~KLvdVikV~  149 (472)
                      ++.+++...|+||++++|++.|+++|.||..+.....  .+.  ++++++...  ..++++.+.|++|-+-..++
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~   73 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK   73 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            5789999999999999999999999999999987753  333  666776553  45889998888877655544

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.74  E-value=0.0001  Score=59.15  Aligned_cols=62  Identities=24%  Similarity=0.354  Sum_probs=48.2

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC----CcE--EEEEEeCCh-hhHHHHHHHHhcCc
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKLV  143 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted----~~~--iTIVV~gdd-~~ieQI~kQL~KLv  143 (472)
                      |++...|+||.+++|+.+|+++|.||.++.....+.    .++  |++.++..+ ..+.++.+.|+++-
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~   70 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC   70 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            789999999999999999999999999999865542    244  566666543 35778887776543

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.74  E-value=0.00019  Score=57.36  Aligned_cols=64  Identities=17%  Similarity=0.329  Sum_probs=52.4

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeC--ChhhHHHHHHHHhcCcee
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVNV  145 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~g--dd~~ieQI~kQL~KLvdV  145 (472)
                      +.+.++|+||.|++|...|+++|.||.+|.--|... ++.  +-|-+.|  ++..++++.+.|.+..+-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~   70 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTED   70 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCe
Confidence            567789999999999999999999999997777665 333  5666777  578899999999886553

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.73  E-value=4.7e-05  Score=63.03  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcccceEEE
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~KLidVi~V  385 (472)
                      ++.+++...|+||++++|+++|+++|.||..+.....  .+.-.|.+++....  ..++++.+.|++|-+-..+
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l   72 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV   72 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999988763  44555666666443  4588888888877755443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.70  E-value=0.00013  Score=55.65  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g  364 (472)
                      |.+.+.|+||.|.+++++|+..|+||.++...+....+..++.+.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            688999999999999999999999999998876655677788877775

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.67  E-value=0.00024  Score=56.40  Aligned_cols=63  Identities=13%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeec--CC-CcE--EEEEEeCChhhHHHHHHHHhcCcee
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VD-KAL--FTIVVSGTERVLRQVVEQLNKLVNV  145 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed-~~~--iTIVV~gdd~~ieQI~kQL~KLvdV  145 (472)
                      +++.+.|+||.|++++.++++.|.||.|+.....  +. ...  +++.+..++ .++.|.+.|.+-.+|
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-~~~~i~~~L~~~~~~   69 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS-KENELIEELKAKFTV   69 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch-HHHHHHHHHhCcccE
Confidence            6889999999999999999999999999987765  22 223  344443333 478888888776444

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.60  E-value=0.00026  Score=53.93  Aligned_cols=61  Identities=15%  Similarity=0.259  Sum_probs=47.3

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC---CcE--EEEEEeC-ChhhHHHHHHHHhcC
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KAL--FTIVVSG-TERVLRQVVEQLNKL  142 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~~--iTIVV~g-dd~~ieQI~kQL~KL  142 (472)
                      |.+.+.|+||.|++|+.+++..|.||.++...+...   .+.  +.+.+.. +...++++++.|.+.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            457889999999999999999999999999876532   332  5555543 346788999988764

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.53  E-value=0.00025  Score=56.70  Aligned_cols=65  Identities=17%  Similarity=0.175  Sum_probs=49.8

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhccc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLI  380 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~KLi  380 (472)
                      +|++...|+||++++|++.|+.+|.||..+........+.-.|.+.+..+.  ..++++.+.|+++-
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999999877534445555555555553  25788887777653

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.52  E-value=0.00063  Score=54.55  Aligned_cols=64  Identities=14%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHK  378 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~K  378 (472)
                      ..+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-+-..-.+.+.      +++..+++.+.|.+
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            36889999999999999999999999999999988865555554444442      34556667777654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.52  E-value=0.00049  Score=55.91  Aligned_cols=64  Identities=28%  Similarity=0.393  Sum_probs=52.8

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcC
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KL  142 (472)
                      ...|+++=.|+||++++|++.+++.|.||..+......+.-.+.+.+++++..++++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence            4689999999999999999999999999999998877654346777888888999999999876

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=97.50  E-value=0.00065  Score=76.38  Aligned_cols=90  Identities=16%  Similarity=0.225  Sum_probs=73.9

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 012043          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (472)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQI  372 (472)
                      .++++.+|+.    +....-.-.|.|.+.|++|+|+.|+.+++.-+.||.+++.. +.+.+...|.+.+. .|-+.+++|
T Consensus       610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i  684 (702)
T PRK11092        610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANI  684 (702)
T ss_pred             ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHH
Confidence            4688999972    21222356999999999999999999999999999999975 44457777777766 577899999


Q ss_pred             HHHHhcccceEEEEec
Q 012043          373 VQLLHKLIDLHEVQDI  388 (472)
Q Consensus       373 vkQL~KLidVi~V~dl  388 (472)
                      +.+|+++-+|.+|...
T Consensus       685 ~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        685 MRKIRVMPDVIKVTRN  700 (702)
T ss_pred             HHHHhCCCCcceEEEc
Confidence            9999999999999764

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.49  E-value=0.00031  Score=56.15  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=48.4

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhcCc
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLV  143 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~KLv  143 (472)
                      +|++...|+||++++|++.|+.+|+||..+........+.  +.+.++.+.  ..++++.+.|+++-
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999998775334444  555555553  25888888776653

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.47  E-value=0.0006  Score=47.10  Aligned_cols=57  Identities=30%  Similarity=0.425  Sum_probs=45.5

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHH
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL  139 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL  139 (472)
                      |++...|+||.+.++++.|+++|+||.++........+  .+++.++..+ .+++++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46888999999999999999999999999987765343  3677776544 677777665

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.47  E-value=0.00043  Score=52.67  Aligned_cols=46  Identities=22%  Similarity=0.315  Sum_probs=37.9

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG  127 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g  127 (472)
                      |.+.+.|+||.|++++++|++.|+||.++...+....+  .+.+.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            68899999999999999999999999999876654333  36666664

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.47  E-value=0.00074  Score=51.85  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=40.3

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd  129 (472)
                      .|.|.+.|+||+|++++++|+..|.||.++.+...++....++.+.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence            5789999999999999999999999999999887765334566665443

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.42  E-value=0.0011  Score=50.85  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=44.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh------HHHHHHHHHH
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD------ESIGKLVQLL  376 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde------~~ieQIvkQL  376 (472)
                      .|.+.+.|+||+|.+++++|+..|.||.++.+...++  ....++.+.+.+      +..+++.+-|
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~l   66 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEEAL   66 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999877654  555566665433      4444444444

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.41  E-value=0.0004  Score=55.99  Aligned_cols=63  Identities=17%  Similarity=0.204  Sum_probs=48.3

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-hHHHHHHHHhcCce
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLVN  144 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~-~ieQI~kQL~KLvd  144 (472)
                      +++.-.|+||.+++|+..|+.+|.||..+........=.+.+.++..+. .++++.+.|+++-+
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~   65 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH   65 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            6889999999999999999999999999975544322125566665543 68888888877653

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.39  E-value=0.00042  Score=55.87  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH-HHHHHHHHHhccc
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-SIGKLVQLLHKLI  380 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~-~ieQIvkQL~KLi  380 (472)
                      +++.-.|+||.+++|+++|+.+|.||..+......  +.-.|.+.+...+. .++++.+.|+++-
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~   64 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA   64 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68889999999999999999999999999755443  55667777776544 6788888887765

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.36  E-value=0.00097  Score=53.98  Aligned_cols=64  Identities=16%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-------ChHHHHHHHHHHhccc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-------TDESIGKLVQLLHKLI  380 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-------de~~ieQIvkQL~KLi  380 (472)
                      +|++...|+||+|++|++.|++.|.||.+-.+... +..+.-+-.|.+.       +++..+++.+.|.+.+
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l   72 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL   72 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999988855 4334433344432       3456788888887643

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.32  E-value=0.0015  Score=50.78  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC------ChhhHHHHHHHHhc
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK  141 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g------dd~~ieQI~kQL~K  141 (472)
                      .|.|.+.|+||+|++|+++|+..|+||.++.+....+....++.+.+      +++..++|.+.|.+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~   68 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE   68 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence            47899999999999999999999999999998765543334555432      23455666666654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.32  E-value=0.023  Score=62.26  Aligned_cols=269  Identities=14%  Similarity=0.164  Sum_probs=161.0

Q ss_pred             EEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheee
Q 012043           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML  163 (472)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaL  163 (472)
                      -+.++||.++||.+.|.+.|.||+.++.+..+.. .-+.++++.++  +++..+.|+++.+=++.    ..-.+.+++++
T Consensus       277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~  350 (587)
T PRK07431        277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK  350 (587)
T ss_pred             cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence            3567899999999999999999999987765432 23667775433  44444444443210000    12226678999


Q ss_pred             EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccceeeecCcCCCC
Q 012043          164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKIALRREKLGDT  237 (472)
Q Consensus       164 IKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlEvaRTG~iAl~Rg~~~~~  237 (472)
                      |.|--..     .--..+++.....+.+|.-++....-|-+.=+.+..+..++.|.. |.           +.+......
T Consensus       351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~-----------~~~~~~~~~  419 (587)
T PRK07431        351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFE-----------LEDSQIEIN  419 (587)
T ss_pred             EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhc-----------cCCcccccC
Confidence            9887543     234477888888888898887665666666666667777777653 32           111000000


Q ss_pred             cccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCCceEEEE
Q 012043          238 APFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTL  317 (472)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~htL  317 (472)
                      .-.|+                                  ..+.-|-.+-.                     ...+..-+|
T Consensus       420 ~~~~~----------------------------------~~~~~v~gIa~---------------------~~~~~~i~l  444 (587)
T PRK07431        420 PTASG----------------------------------QDEPEVRGVAL---------------------DRNQAQLAI  444 (587)
T ss_pred             ccccC----------------------------------CCCCcEEEEEc---------------------cCCEEEEEE
Confidence            00000                                  00111111111                     112222233


Q ss_pred             EEEEeCchhHHHHHHHHHhccCceeeeeeeeec-CCCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCchHHH
Q 012043          318 SMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAE  395 (472)
Q Consensus       318 SilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~t-e~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~~V~  395 (472)
                      . .+.++||.++++.+.+.++|.||+.++.... +..+.-.++++++.++ ..+.++.++|.+..+...+       .+.
T Consensus       445 ~-~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------~~~  516 (587)
T PRK07431        445 R-NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------EDG  516 (587)
T ss_pred             C-CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------EEe
Confidence            2 4668899999999999999999999987543 3335667888888532 3456666666654444333       244


Q ss_pred             HhhheeEEecCcc-c----HHHHHHHHHHhCcEEEEecCChhh
Q 012043          396 RELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDHTIT  433 (472)
Q Consensus       396 REL~LiKV~~~~~-~----r~eI~~ia~iFrakIVDvs~~sit  433 (472)
                      +.+++|-|--..- .    -..+++.....+.++.-++...+.
T Consensus       517 ~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~  559 (587)
T PRK07431        517 PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIR  559 (587)
T ss_pred             CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceE
Confidence            5677777754321 2    247777778888888887765433

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=97.31  E-value=0.0015  Score=73.86  Aligned_cols=91  Identities=20%  Similarity=0.356  Sum_probs=75.1

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 012043          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (472)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQI  372 (472)
                      +.+++..|+.   ..+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......++..|++++. .|-..+++|
T Consensus       650 eR~I~V~W~~---~~~~-~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l  725 (743)
T PRK10872        650 ERIVDAVWGE---SYSS-GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV  725 (743)
T ss_pred             ceEEEeEecC---CCCc-eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence            3578999972   1122 2356999999999999999999999999999999986544467888888877 677899999


Q ss_pred             HHHHhcccceEEEEec
Q 012043          373 VQLLHKLIDLHEVQDI  388 (472)
Q Consensus       373 vkQL~KLidVi~V~dl  388 (472)
                      +.+|+++-+|.+|...
T Consensus       726 ~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        726 LGKLNQVPDVIDARRL  741 (743)
T ss_pred             HHHHhcCCCcCeEEec
Confidence            9999999999999864

>PRK05092 PII uridylyl-transferase; Provisional

Probab=97.29  E-value=0.013  Score=67.86  Aligned_cols=66  Identities=17%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe------CChHHHHHHHHHHhcccc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP------GTDESIGKLVQLLHKLID  381 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~------gde~~ieQIvkQL~KLid  381 (472)
                      ..|.|...|+||+|.+|+++|++.|+||.+..+. |.....-.+-.+.+      .+++..++|.+.|.+.++
T Consensus       844 t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~-T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        844 TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA-TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             EEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE-EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999998 44444444444433      234467788888877664

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=97.29  E-value=0.0015  Score=73.15  Aligned_cols=88  Identities=17%  Similarity=0.242  Sum_probs=73.2

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 012043          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (472)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQI  372 (472)
                      .++++..|+.   +.+. .-...|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+.+. .+-+.+..|
T Consensus       594 er~I~v~W~~---~~~~-~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i  668 (683)
T TIGR00691       594 EKIIEVEWNA---SKPR-RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI  668 (683)
T ss_pred             ccEEEEEecC---CCCc-eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence            4688999972   1122 335699999999999999999999999999999999654 457877777776 578899999


Q ss_pred             HHHHhcccceEEEE
Q 012043          373 VQLLHKLIDLHEVQ  386 (472)
Q Consensus       373 vkQL~KLidVi~V~  386 (472)
                      +.+|.++-+|.+|.
T Consensus       669 i~~L~~i~~V~~v~  682 (683)
T TIGR00691       669 MLKIKTKNDVIVVK  682 (683)
T ss_pred             HHHHhCCCCceEEe
Confidence            99999999999985

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.29  E-value=0.0014  Score=53.51  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK  378 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~K  378 (472)
                      +|.|...|+||+|.++++.|++.|+||.+-.+..|.+...-..-.|.+.+     ++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999887776555555555532     2445566666654

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.25  E-value=0.0023  Score=51.91  Aligned_cols=64  Identities=23%  Similarity=0.408  Sum_probs=53.3

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL  379 (472)
                      ...|++.-.|+||+++++++.+++.|.||..+......  +.-.+.+.+.++++..+++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~--~~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLG--GRFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEET--TEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEc--CeEEEEEEEEeCcccHHHHHHHHHHH
Confidence            45899999999999999999999999999999888765  44668888888888999999999876

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.24  E-value=0.0016  Score=60.00  Aligned_cols=77  Identities=27%  Similarity=0.384  Sum_probs=63.5

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEE--eCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV--~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      +.+.+||++.++|+.|.|+++....++++.||-+++..- -+...-+||.+  .+-+..++.|+..|.|+-.|.+|+-+.
T Consensus        69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg  148 (150)
T COG4492          69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG  148 (150)
T ss_pred             cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence            346799999999999999999999999999999888663 22223366654  477888999999999999999998543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.23  E-value=0.0019  Score=51.95  Aligned_cols=45  Identities=18%  Similarity=0.347  Sum_probs=36.7

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV  125 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV  125 (472)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v   47 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV   47 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence            578899999999999999999999999999987553322345554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.20  E-value=0.002  Score=59.43  Aligned_cols=76  Identities=22%  Similarity=0.356  Sum_probs=63.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEEecC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      +.+||++.++++.|.|+++....+|++.||-+++-.-. -.+...+|+.++  +-+..++.|+..|+|+-.|.+|+-+.
T Consensus        71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg  148 (150)
T COG4492          71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG  148 (150)
T ss_pred             eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence            46899999999999999999999999999998877532 235555666655  77889999999999999999998653

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.18  E-value=0.0027  Score=50.89  Aligned_cols=61  Identities=28%  Similarity=0.387  Sum_probs=44.9

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe---C----ChhhHHHHHHHHhc
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G----TERVLRQVVEQLNK  141 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~---g----dd~~ieQI~kQL~K  141 (472)
                      .|.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-. =++.|.   |    +++..+++.+.|.+
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999877744432 233332   1    34456666666654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.16  E-value=0.0035  Score=48.66  Aligned_cols=62  Identities=24%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhcc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKL  379 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~KL  379 (472)
                      .|.|...|+||+|++|+++|+..|.||.++.+....+  ..-.++.+.+      +++..++|.+.|.+.
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            4789999999999999999999999999999876543  4444554432      344566666666543

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.15  E-value=0.0021  Score=51.99  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=46.2

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe----C----ChhhHHHHHHHHhcC
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL  142 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~----g----dd~~ieQI~kQL~KL  142 (472)
                      +|+++..|+||+|++|++.|++.|.||.+-.+....+.-.-++.|.    |    ++...+++.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999885422212344432    2    345577787777664

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.08  E-value=0.0011  Score=60.22  Aligned_cols=61  Identities=18%  Similarity=0.361  Sum_probs=50.1

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHH
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL  375 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQ  375 (472)
                      |+-..||+++||+||=|..++..++..|+||..++.+.|.+.||-||.  |+.. +...+..+.
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmv--V~~~-d~A~~~Lee   61 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMV--VDRP-DEAHSVLEE   61 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEE--cCCh-HHHHHHHHH
Confidence            345689999999999999999999999999999999999999998874  4533 344444443

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.05  E-value=0.0019  Score=52.60  Aligned_cols=63  Identities=22%  Similarity=0.317  Sum_probs=47.3

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcC
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KL  142 (472)
                      .+|++.-.|+||+.++|+++++.+|.||..+..-...+.-.|.+.++.+....+++.+.|+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence            578999999999999999999999999999987773222125566665544566666666544

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.99  E-value=0.0033  Score=51.37  Aligned_cols=61  Identities=16%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEE-eC-----ChhhHHHHHHHHhc
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV-SG-----TERVLRQVVEQLNK  141 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV-~g-----dd~~ieQI~kQL~K  141 (472)
                      +|.|++.|+||+|+++++.|++.|+||.+-.+..|.+.-. =++.| ++     +++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999987765532 23333 32     22445556666544

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.99  E-value=0.0054  Score=49.73  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=53.4

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCChhhHHHHHHHHhcCceeeE
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGTERVLRQVVEQLNKLVNVIK  147 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV~gdd~~ieQI~kQL~KLvdVik  147 (472)
                      +|.+.+.|+||.|.+|...|+.+|+|+..|---|..... .  +=|-++|++..+++++++|.+...=++
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~   71 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN   71 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence            456667899999999999999999999999988876542 2  555677877789999999988654333

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.99  E-value=0.0061  Score=49.42  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=55.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceEE
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHE  384 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~  384 (472)
                      +|.+.+.|+||.|.++...|+.+|+|+..|.--|... +.-..+-|=++|++..+++++++|++...=++
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~   71 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN   71 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence            4556678999999999999999999999999888765 44556666677888889999999998655443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.98  E-value=0.0036  Score=50.34  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=37.3

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP  363 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~  363 (472)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+.+.+  +..-.++.+.
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~--~~~~d~f~v~   48 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQG--DMAVNVFYVT   48 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCC--CeEEEEEEEE
Confidence            578899999999999999999999999999887553  3444555553

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.96  E-value=0.0049  Score=50.43  Aligned_cols=49  Identities=16%  Similarity=0.235  Sum_probs=40.9

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP  363 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~  363 (472)
                      |.|.|+..|+||++++++|.|++.|+||.+-.+-.+.+.-.--.-.|.+
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d   50 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG   50 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec
Confidence            6789999999999999999999999999999888886655444444444

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.96  E-value=0.0064  Score=54.12  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V  385 (472)
                      .+.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ++-..+-|=+.|+.+.+.+++++|.+...-++|
T Consensus        40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            3678888889999999999999999999999999988744 444555566778777899999999886664443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=96.91  E-value=0.03  Score=63.76  Aligned_cols=50  Identities=16%  Similarity=0.268  Sum_probs=40.3

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g  364 (472)
                      ..+|.|...|+||+|.+|+++|+..|+||.+..+... ....--.-.|.+.
T Consensus       707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~d~  756 (774)
T PRK03381        707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVTGA  756 (774)
T ss_pred             eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEECC
Confidence            3689999999999999999999999999999999888 4344444444443

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=96.85  E-value=0.049  Score=62.37  Aligned_cols=65  Identities=22%  Similarity=0.302  Sum_probs=49.3

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-C---ChHHHHHHHHHHhc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHK  378 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-g---de~~ieQIvkQL~K  378 (472)
                      ...+.|...|+||+|.+|+.+|+.+|+||.+..+........--+.+... |   +++..+.|.++|.+
T Consensus       779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~  847 (850)
T TIGR01693       779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA  847 (850)
T ss_pred             eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998766444444444322 1   34566777776654

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.80  E-value=0.0052  Score=58.85  Aligned_cols=83  Identities=25%  Similarity=0.266  Sum_probs=68.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchH
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF  393 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~  393 (472)
                      ..-||+.++|+||||..+||+.+.+|-||.-...---.+....+|-+-++|- +..+.|+..|+..-.|++|+.+...+-
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi-~d~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI-DDFEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC-CCHHHHHHHhhccceEEEeeecchHHH
Confidence            4579999999999999999999999999987655444455588888888864 467899999999999999998887666


Q ss_pred             HHHh
Q 012043          394 AERE  397 (472)
Q Consensus       394 V~RE  397 (472)
                      ++--
T Consensus        81 iyGK   84 (218)
T COG1707          81 IYGK   84 (218)
T ss_pred             HhCc
Confidence            5543

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=96.77  E-value=0.0048  Score=50.29  Aligned_cols=63  Identities=27%  Similarity=0.258  Sum_probs=46.5

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL  379 (472)
                      .+|++.-.|+||+.++|+++++.+|.||..+..-.....-..||.+.++  ....+++.+.|+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHH
Confidence            5789999999999999999999999999999888744444444444444  33455565555443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.75  E-value=0.0046  Score=62.64  Aligned_cols=70  Identities=10%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             ccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhhHHHHHHHHhcCce
Q 012043           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNKLVN  144 (472)
Q Consensus        75 ~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-d~~ieQI~kQL~KLvd  144 (472)
                      .+|.++.+++...|+||+.++|+++|+.+|.||+.++...+...++  |.+.++.. ...++++...|+++-+
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~   75 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA   75 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence            3677899999999999999999999999999999999874444555  44444422 2347777777766544

>PRK03059 PII uridylyl-transferase; Provisional

Probab=96.65  E-value=0.063  Score=61.89  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=51.7

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe---CChHHHHHHHHHHhcccce
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP---GTDESIGKLVQLLHKLIDL  382 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~---gde~~ieQIvkQL~KLidV  382 (472)
                      ..|.|...|+||+|.+|+++|++.|+||.+-.+..+ +..+-..-.|..   .+++..++|.+.|.+.++|
T Consensus       787 T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVEDTFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             EEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999888877 433333333322   1456788888888877665

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.65  E-value=0.0034  Score=66.26  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=59.9

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      -.|+|.+.=+|+||++++|+.++++.|+||..+.+....+..++.|-+++  ..-+.++++|+++-+|++|.-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            45899999999999999999999999999999999766644456666665  4466888999999999998753

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.64  E-value=0.0065  Score=61.59  Aligned_cols=71  Identities=14%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 012043          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLI  380 (472)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-e~~ieQIvkQL~KLi  380 (472)
                      ..|.++++++...|+||+.++||++|+.+|.||..++...+...++-.|.+.+... ...++++...|+++-
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~   74 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIA   74 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999755556666677666522 223555555555543

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.63  E-value=0.0088  Score=60.52  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC--hHHHHHHHHHHhccc
Q 012043          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLI  380 (472)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd--e~~ieQIvkQL~KLi  380 (472)
                      .|+++.+++.-.|+||..+.|+++++.+|.||..++.......+.-.|.+.++.+  ...++++...|+++-
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~   74 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA   74 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998874344555666565541  223555555555444

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.62  E-value=0.012  Score=48.49  Aligned_cols=62  Identities=15%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHh
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLH  377 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~  377 (472)
                      .+|.|...|+||+|.+|+..|++-|.+|.+-.++.-.. ..-..-.|.+.      |++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ge-rv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGG-WFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCC-eEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            47899999999999999999999999999988876554 33333334332      3456777777764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.60  E-value=0.013  Score=50.13  Aligned_cols=68  Identities=12%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGT-DESIGKLVQLLHKLI  380 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~gd-e~~ieQIvkQL~KLi  380 (472)
                      .+.+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=++|. +..+++++++|.+-+
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~   82 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI   82 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence            35678888899999999999999999999999999887543 444555556674 677888888887733

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=96.60  E-value=0.013  Score=66.05  Aligned_cols=88  Identities=18%  Similarity=0.378  Sum_probs=73.1

Q ss_pred             ccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHH
Q 012043          295 QVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLV  373 (472)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIv  373 (472)
                      .+++..|+.-.    ++.-...|.|...|++|+|+.|+.++++-+.||.+++.... ..++.-|.+.+. .|-..+.+|+
T Consensus       612 r~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~  686 (701)
T COG0317         612 RVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVL  686 (701)
T ss_pred             eEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHHH
Confidence            68888998332    33346899999999999999999999999999999999886 556665555555 4778999999


Q ss_pred             HHHhcccceEEEEe
Q 012043          374 QLLHKLIDLHEVQD  387 (472)
Q Consensus       374 kQL~KLidVi~V~d  387 (472)
                      .||..+-+|..|..
T Consensus       687 ~~l~~~~~V~~v~R  700 (701)
T COG0317         687 ARLKQLPDVISVRR  700 (701)
T ss_pred             HHHhcCCCeEEEEe
Confidence            99999999999874

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.59  E-value=0.0051  Score=62.22  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVN  144 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~g--dd~~ieQI~kQL~KLvd  144 (472)
                      .|+++.|++.-.|+||..+.|+++|+.+|.||+.++.......+.  |.+.++.  ....++++...|++|-+
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~   75 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE   75 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999887333344  4444544  12346666666665553

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=96.59  E-value=0.062  Score=62.25  Aligned_cols=65  Identities=11%  Similarity=0.233  Sum_probs=50.6

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhccc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKLI  380 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~KLi  380 (472)
                      ..|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+-..-.|.+.      +++..++|.+.|.+.+
T Consensus       815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999888 5444444444442      2346777777777654

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.55  E-value=0.014  Score=48.23  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEE-eC----ChhhHHHHHHHHh
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-SG----TERVLRQVVEQLN  140 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV-~g----dd~~ieQI~kQL~  140 (472)
                      .+|.|...|+||+|.+|+..|++.|.+|.+-.++.-.+.-.  |-+.- +|    |++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            47899999999999999999999999999988886555432  43332 23    3466777777763

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.52  E-value=0.015  Score=47.61  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=38.8

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS  126 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~  126 (472)
                      |.|.|+..|+||++++++|.|++.|+||.+-.+-.+.+.-. =++.|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~   49 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT   49 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence            67899999999999999999999999999998877755432 344443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.51  E-value=0.018  Score=51.27  Aligned_cols=70  Identities=16%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gdd~~ieQI~kQL~KLvdVikV  148 (472)
                      +..|.+.+.|+||.|.+|...|+.+|+|+.+|---|+....  + +=|-+.|+...+.+++++|.+...-++|
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            56888888999999999999999999999999988875443  2 5555677766788899998876654444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05007 PII uridylyl-transferase; Provisional

Probab=96.42  E-value=0.1  Score=60.47  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-----ChHHHHHHHHHHhccc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLI  380 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-----de~~ieQIvkQL~KLi  380 (472)
                      ...|.|...|+||+|.+|+.+|.+-|+||.+--+..-.+ ..-.+-.|.+.     +++..+.|.++|..-+
T Consensus       808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge-ra~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE-RVEDLFILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc-eEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999988876444 44444444432     2455667777665544

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.25  E-value=0.022  Score=48.68  Aligned_cols=64  Identities=13%  Similarity=0.247  Sum_probs=50.6

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhhHHHHHHHHhc
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK  141 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-d~~ieQI~kQL~K  141 (472)
                      .+-+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+....  + +=|-++|. +..++++++.|.+
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~   80 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN   80 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence            346777888999999999999999999999999988876543  2 44556664 6677778877766

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.24  E-value=0.0093  Score=63.01  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=59.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      -.|+|.+.=+|+||++++|+.++++.|+||.++.+....  +..-|+|-+++  ..-+.++++|+++-+|++|.-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            458999999999999999999999999999999996554  55555555554  4567899999999999999754

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.22  E-value=0.017  Score=55.42  Aligned_cols=81  Identities=23%  Similarity=0.368  Sum_probs=63.1

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~  156 (472)
                      ..-||+.++|+||||..++|+.+.+|-||.-...-...+  .+.+-+-+.|-+ ..+.++..|+-+-.|++|+.+..-+.
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence            346899999999999999999999999998655433222  234666777644 58899999999999999998887555


Q ss_pred             hhhh
Q 012043          157 VERE  160 (472)
Q Consensus       157 V~RE  160 (472)
                      ++--
T Consensus        81 iyGK   84 (218)
T COG1707          81 IYGK   84 (218)
T ss_pred             HhCc
Confidence            5543

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=96.19  E-value=0.022  Score=64.38  Aligned_cols=72  Identities=21%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEEEec
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      .-.|.|.+.|++|+|+.|+.+++..+.||.+++.... +.+.  +++.+. .+-..+++|+++|.++-+|++|...
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN  700 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence            3489999999999999999999999999999997543 3332  444443 4678999999999999999999864

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.15  E-value=0.011  Score=64.41  Aligned_cols=74  Identities=20%  Similarity=0.384  Sum_probs=60.1

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      ..|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-.++++-|+..-+.++++|.++.+|.+|..+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence            34778777799999999999999999999999999987665553334444555668888999999999998765

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.12  E-value=0.024  Score=47.16  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=46.5

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeee--ecCCCCeEEEEEEEeC----ChHHHHHHHHHHhc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVPG----TDESIGKLVQLLHK  378 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg--~te~~~iSRiTIVv~g----de~~ieQIvkQL~K  378 (472)
                      +|.|...|+||+|.+|+..|.+-|++|.+-.++  .-...-+.-+.+-.+|    |++..+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            688999999999999999999999999998887  4444444444443334    44556677766654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.10  E-value=0.022  Score=47.38  Aligned_cols=61  Identities=13%  Similarity=0.187  Sum_probs=45.1

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeee--ecCCCc--EEEEEEeC----ChhhHHHHHHHHhc
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKA--LFTIVVSG----TERVLRQVVEQLNK  141 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg--~Ted~~--~iTIVV~g----dd~~ieQI~kQL~K  141 (472)
                      +|.|.+.|+||+|.+|+..|++-|++|.+--++  .-.+..  .|-+..+|    |+...+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            688999999999999999999999999998888  333322  25554434    44556667666644

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=96.07  E-value=0.027  Score=59.01  Aligned_cols=79  Identities=19%  Similarity=0.196  Sum_probs=63.1

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHH
Q 012043          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESI  369 (472)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~-gde~~i  369 (472)
                      ..++..+|.      ..++ ...|.|.+.|+||+|++|+.+++.-+.||.+++.....   ..+..+|.+++. .|.+.+
T Consensus       313 ~~il~~~l~------~~~y-~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L  385 (403)
T PRK07334        313 ANVLLRGLV------RAGR-LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHL  385 (403)
T ss_pred             HHHHHHHHH------hCCC-EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHH
Confidence            344555554      3343 46999999999999999999999999999999986431   357788887776 578899


Q ss_pred             HHHHHHHhcc
Q 012043          370 GKLVQLLHKL  379 (472)
Q Consensus       370 eQIvkQL~KL  379 (472)
                      ++++++|++.
T Consensus       386 ~~vi~~Lr~~  395 (403)
T PRK07334        386 QEVIAALRAA  395 (403)
T ss_pred             HHHHHHHHHc
Confidence            9999999985

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=96.07  E-value=0.027  Score=44.57  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhc
Q 012043          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHK  378 (472)
Q Consensus       317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~K  378 (472)
                      +++.+.++||-|.++..+++. |-||-.+.-.... .+..++.+.++. +.+.++++.++|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            467889999999999999999 9999999887665 667788888773 55789999999876

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.06  E-value=0.016  Score=55.89  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHH
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGK  371 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g--de~~ieQ  371 (472)
                      |+|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+-.=|.|-+++  +++.+++
T Consensus       149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            67778889999999999999999999999999999988888778888875  5555554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK07431 aspartate kinase; Provisional

Probab=96.01  E-value=0.32  Score=53.48  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=40.5

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLi  380 (472)
                      .++||++.|+...+++.|+|+..++.      .=-+++++|+  ++..++.++.|++-.
T Consensus       530 ~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~--~~~~~~av~~Lh~~f  580 (587)
T PRK07431        530 PGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVA--EDDGVKALQAVHQAF  580 (587)
T ss_pred             cCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEe--HHHHHHHHHHHHHHh
Confidence            58899999999999999999988882      2235667776  567788888887765

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=95.99  E-value=0.036  Score=53.35  Aligned_cols=114  Identities=15%  Similarity=0.169  Sum_probs=78.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc---e-EEEEec
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID---L-HEVQDI  388 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLid---V-i~V~dl  388 (472)
                      ...+|+++-.|+||..++|+.+++..|.||..........  .--|.+.+.+....+.++...|.++.+   + +.++..
T Consensus         7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~   84 (190)
T PRK11589          7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT   84 (190)
T ss_pred             cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence            4569999999999999999999999999999988776644  455777778887888888888877763   2 234343


Q ss_pred             CCchHHHHhhh-eeEEecCcccHH----HHHHHHHHhCcEEEEecCC
Q 012043          389 THLPFAERELI-LIKIAVNTAARR----DVLDIAKIFRARAVDVSDH  430 (472)
Q Consensus       389 t~~~~V~REL~-LiKV~~~~~~r~----eI~~ia~iFrakIVDvs~~  430 (472)
                      ....  ..+.. .+.|.+...+|+    +|-+....++..|.+.+.+
T Consensus        85 ~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~  129 (190)
T PRK11589         85 TARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR  129 (190)
T ss_pred             cccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence            2211  22332 366666656663    4444445556666666544

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.94  E-value=0.033  Score=57.57  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=56.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee---ecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG---PAEKEGLSCITTVVPG-TDESIGKLVQLLHKL  379 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg---~te~~~iSRiTIVv~g-de~~ieQIvkQL~KL  379 (472)
                      +.++|++.+.|+||.|.+++.+++..|.||.++...   .....+...+++.++. +.+.+++|++-|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            467999999999999999999999999999999776   3334577788888884 567788999888764

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.91  E-value=0.03  Score=46.61  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=48.2

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEE-EeC----ChhhHHHHHHHHhcC
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL  142 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIV-V~g----dd~~ieQI~kQL~KL  142 (472)
                      .+.|...|+||+|.+|+..|++.|++|.+-.++...+...  +-|. .+|    |+...+.|.+.|.+.
T Consensus         3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999987655433  4443 234    566677777777543

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=95.90  E-value=0.086  Score=53.72  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeee-cCCC-CeEEEEEEEe--C--ChHHHHHHHHHHhcccce
Q 012043          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGP-AEKE-GLSCITTVVP--G--TDESIGKLVQLLHKLIDL  382 (472)
Q Consensus       309 ~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~-te~~-~iSRiTIVv~--g--de~~ieQIvkQL~KLidV  382 (472)
                      .+.|.+++|++.-.|+||+.++||++++..|.||..++.-. +... -+.|+.++..  +  +...+++-.+++-+-.++
T Consensus         4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l   83 (289)
T PRK13010          4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDM   83 (289)
T ss_pred             cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            45577789999999999999999999999999999998851 2223 3445555533  2  223444444444444442


Q ss_pred             -EEEEec
Q 012043          383 -HEVQDI  388 (472)
Q Consensus       383 -i~V~dl  388 (472)
                       ++++..
T Consensus        84 ~~~i~~~   90 (289)
T PRK13010         84 QWAIHPD   90 (289)
T ss_pred             eEEEecC
Confidence             344443

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.88  E-value=0.045  Score=45.01  Aligned_cols=61  Identities=15%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhhHHHHHHHHhc
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      .+.+.+.|+||.|.++...|..+|+|+..|.--|.....  + +=|-++|+...++++++.|.+
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            345566899999999999999999999999988865543  2 556677877777788777765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.88  E-value=0.052  Score=44.68  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      +|.+.+.|+||.|.++...|..+|+|+..|.--|.-. +.-..+-|=++|+...+.++++.|.+
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            3455668999999999999999999999999888654 34455566677887788888888876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.85  E-value=0.04  Score=62.76  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=59.5

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEEEec
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      -.|.|.+.|++|+|+.|+.+++.-+.||.++++......+.  +++++. .|-..+.+|+++|.++-+|++|...
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL  741 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence            48999999999999999999999999999999854332332  444444 4678999999999999999999864

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.85  E-value=0.036  Score=62.44  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=58.4

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEEE
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV~  149 (472)
                      .-.|.|.+.|++|+|+.|+.+++.-+.||.++++.... .+.  +.+.+. .+-..+..|+.+|.++-+|++|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~  682 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG-KREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK  682 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence            44899999999999999999999999999999986543 333  444443 46789999999999999999885

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=95.83  E-value=0.22  Score=57.69  Aligned_cols=67  Identities=15%  Similarity=0.226  Sum_probs=48.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C---ChHHHHHHHHHHhcccc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHKLID  381 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--g---de~~ieQIvkQL~KLid  381 (472)
                      ..+|.|...|+||+|.+|++.|+..|.||.+-.+... +..+--.-.|.+  |   ++...++|.+.|.+.++
T Consensus       796 ~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        796 RTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             eEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            3589999999999999999999999999999988888 433333333333  2   12333677777665443

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.70  E-value=0.025  Score=54.59  Aligned_cols=56  Identities=23%  Similarity=0.238  Sum_probs=45.7

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC--ChhhHHH
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ  134 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g--dd~~ieQ  134 (472)
                      .|+|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+  +|.|.+++  +++.+++
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            47888888999999999999999999999999999876555  47777775  4454443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.68  E-value=0.06  Score=54.63  Aligned_cols=71  Identities=17%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEE
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHE  384 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~  384 (472)
                      +-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+.. ++-..+-|=+.|  ++..+.+.+++|++.-.-++
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~k  267 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVR  267 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEE
Confidence            567777889999999999999999999999999999854 566676677777  45678888888887655333

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.58  E-value=0.025  Score=61.57  Aligned_cols=73  Identities=22%  Similarity=0.369  Sum_probs=60.7

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      .|+|-+.-.|+||++.+|+.+|++.++||.++.++..+..+..=|.+-+  |+..-+.++++|+++.+|.+|..+
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~--D~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV--DDPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC--CCCCCHHHHHHHhcCCCcceEEEE
Confidence            3788777799999999999999999999999999998776665554444  445668888999999999998865

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=95.56  E-value=0.037  Score=52.50  Aligned_cols=71  Identities=21%  Similarity=0.334  Sum_probs=60.6

Q ss_pred             EEEEEEEE--eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEE
Q 012043          314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ  386 (472)
Q Consensus       314 ~htLSilV--eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~  386 (472)
                      .++|.++.  .+.||+|+.|+++.+.||++|..+-....|-.+-+++||++++  ..-..++.||.|+--|.+|.
T Consensus        93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~  165 (167)
T COG2150          93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS  165 (167)
T ss_pred             CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence            35677776  4689999999999999999999998888877888999999985  35667899999999888875

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.54  E-value=0.018  Score=55.06  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=52.2

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc----E----EEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----L----FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~----~----iTIVV~gdd~~ieQI~kQL~KLvdVikV~  149 (472)
                      ..+.+.+-+.|+||.+++++.+|.++|+||++|..-..-.++    .    +|+-+.. ...+.+|..+++.|-|=+.|+
T Consensus        91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v~  169 (176)
T COG2716          91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNVD  169 (176)
T ss_pred             ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcce
Confidence            357899999999999999999999999999999887544443    2    3333332 335777778877766555444

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.50  E-value=0.064  Score=44.69  Aligned_cols=64  Identities=11%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHhcc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKL  379 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--g----de~~ieQIvkQL~KL  379 (472)
                      .++.|...|+||+|.+|+..|++-||+|.+-.++...+. ....--+.+  |    |+...+.|.+.|.+.
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~ger-a~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDD-AHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCce-EEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999888875543 333333333  3    566677777777654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=95.42  E-value=0.038  Score=55.95  Aligned_cols=62  Identities=15%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhc
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~K  141 (472)
                      ++|++.-.|+||+.++|+++++.+|.||..++.-.....+.  |.+.++.++  ...+++...|+.
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            37899999999999999999999999999999776655566  555566433  345666655544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK06635 aspartate kinase; Reviewed

Probab=95.30  E-value=0.1  Score=54.26  Aligned_cols=120  Identities=20%  Similarity=0.241  Sum_probs=82.5

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeCChhhHHHHHHHHhcCc---eeeEEEecCCchhhhhhe
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKLV---NVIKVEDISNEPHVEREL  161 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~gdd~~ieQI~kQL~KLv---dVikV~dlt~~~~V~REL  161 (472)
                      ..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++.  ...++..+.|+++.   .+..+.       +.+.+
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i~-------~~~~i  340 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--DDLEKALELLEEVKDEIGAESVT-------YDDDI  340 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence            67899999999999999999999998776554 3457888763  33455666666632   222222       56678


Q ss_pred             eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043          162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (472)
Q Consensus       162 aLIKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (472)
                      +++.|...     +..-.++++....++..|.-++....-+-++=+.+..+..++.|.
T Consensus       341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh  398 (404)
T PRK06635        341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH  398 (404)
T ss_pred             EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence            88888532     234457888888889889877644444545555566666666664

>PRK07334 threonine dehydratase; Provisional

Probab=95.29  E-value=0.071  Score=55.95  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=51.7

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC---CCc--EEEEEEe-CChhhHHHHHHHHhcC
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL  142 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te---d~~--~iTIVV~-gdd~~ieQI~kQL~KL  142 (472)
                      ...|.|.+.|+||+|++|+.+++.-+.||.+++.....   ..+  .+.+++. .|.+.+++++++|++.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999986431   223  2454444 4778899999999885

>PRK06382 threonine dehydratase; Provisional

Probab=95.29  E-value=0.07  Score=56.10  Aligned_cols=66  Identities=18%  Similarity=0.329  Sum_probs=54.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee----ecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG----PAEKEGLSCITTVVPGT-DESIGKLVQLLHKL  379 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg----~te~~~iSRiTIVv~gd-e~~ieQIvkQL~KL  379 (472)
                      ++..|.+.+.|+||.|.+++.+|...|.||.++...    +. .++...+++.++.. .+..++|.+.|++.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            357899999999999999999999999999999876    33 35677888888863 45667899988764

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.27  E-value=0.029  Score=61.02  Aligned_cols=71  Identities=17%  Similarity=0.356  Sum_probs=57.6

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      -|+|-+.-.|+||++.+|+.+++..++||.++.++..+..+.  |.|.+  |+..-+.++++|.++.+|.+|..+
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~--D~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL--DQPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc--CCCCCHHHHHHHhcCCCccEEEEE
Confidence            467777778999999999999999999999999998766554  44545  445567788888888888888754

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.24  E-value=0.079  Score=54.81  Aligned_cols=65  Identities=14%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeee---ecCCCc--EEEEEEeC-ChhhHHHHHHHHhcC
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL  142 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg---~Ted~~--~iTIVV~g-dd~~ieQI~kQL~KL  142 (472)
                      +.++|++.+.|+||.|.+++.++++.|.||.++...   .....+  .+++.++. +.+.+++|++-|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            456999999999999999999999999999999765   222223  37777764 456778888888664

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=95.09  E-value=0.3  Score=49.84  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=36.3

Q ss_pred             ccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeee
Q 012043           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG  113 (472)
Q Consensus        75 ~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg  113 (472)
                      ++|.+++|++.-.|+||+.++|+++++..|.||..++.-
T Consensus         5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            457788999999999999999999999999999999975

>PRK11899 prephenate dehydratase; Provisional

Probab=95.09  E-value=0.15  Score=51.86  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvd  144 (472)
                      +-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+... + + +-|-+.|  ++..+.+.+++|.+.-.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~  264 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE  264 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            5677778899999999999999999999999999887654 3 2 5555666  45667888888876554

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.06  E-value=0.029  Score=53.63  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=53.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC----CeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE----GLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQ  386 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~----~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~  386 (472)
                      ..+.+.+.++||||.++++|.+|.++|+||++|..-..-.|    .+-.+.|.+.- ---.+.+|..+++.|-|=+.|+
T Consensus        91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v~  169 (176)
T COG2716          91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNVD  169 (176)
T ss_pred             ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcce
Confidence            35899999999999999999999999999999987644333    33344444331 2246778888877765544443

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=95.05  E-value=0.066  Score=43.85  Aligned_cols=56  Identities=13%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhcccce
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDL  382 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL~KLidV  382 (472)
                      ..+.||++.++.+.|++.|.|++-++.++      .+++++++.++     +.+++|++.|+++=+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v   71 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV   71 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence            46789999999999999999999996422      67999999664     3799999999995444

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=94.99  E-value=0.12  Score=53.93  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=57.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPG-TDESIGKLVQLLHKL  379 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~g-de~~ieQIvkQL~KL  379 (472)
                      +..+|++.+.|+||.|.++..+++..|.||.+++-.+..   ..+...+++.++. +.+.+++|.+.|++.
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            457999999999999999999999999999999987632   2578889999884 556789999999765

>PRK06382 threonine dehydratase; Provisional

Probab=94.96  E-value=0.091  Score=55.25  Aligned_cols=65  Identities=23%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeee----ecCCC-cEEEEEEeCC-hhhHHHHHHHHhcC
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDK-ALFTIVVSGT-ERVLRQVVEQLNKL  142 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg----~Ted~-~~iTIVV~gd-d~~ieQI~kQL~KL  142 (472)
                      ++..|.+.+.|+||.|.+++.+|...|.||.++...    +.+.. ..+++.++.. .+..++|.+.|++.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            467899999999999999999999999999999875    33222 2477777754 34556888888663

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=94.85  E-value=0.11  Score=38.04  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=39.9

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL  376 (472)
                      +.|.||++.++...+++.|.||+.++.++... +.-.++++++.  +..++..+.|
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~~--~~~~~~~~~l   60 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVPK--SDLEKALAIL   60 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEeH--HHHHHHHHHh
Confidence            57899999999999999999999998876543 33557777763  4455554443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.81  E-value=0.14  Score=40.58  Aligned_cols=59  Identities=14%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeC-ChhhHHHHHHHHhc
Q 012043           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSG-TERVLRQVVEQLNK  141 (472)
Q Consensus        82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~g-dd~~ieQI~kQL~K  141 (472)
                      +++.+.++||-|.+++.+++. |.||-.+.-..... ...+.++++. +.+.++++.++|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            467889999999999999999 99999998765442 2345555552 45678899988865

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=94.73  E-value=0.13  Score=37.68  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=37.7

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCChhhHHHHHHH
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ  138 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~iTIVV~gdd~~ieQI~kQ  138 (472)
                      +.|.||++.++...+++.|.||+.++.++..... .++++++.  ...++..+.
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~   59 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAI   59 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHH
Confidence            5789999999999999999999999887644332 37777753  334444443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=94.66  E-value=0.13  Score=41.48  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=44.6

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHK  378 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL~K  378 (472)
                      ..+.||++.|+...+++.|+|++.++.++      .+++++++.++     +.+..|.+.|+|
T Consensus        11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            56789999999999999999999986422      77999999655     488999999999

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=94.65  E-value=0.16  Score=57.66  Aligned_cols=72  Identities=26%  Similarity=0.356  Sum_probs=61.5

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~d  150 (472)
                      .-...|.|...|++|+|+.|+.++++-+.||.+++.... +.+  .  |+|.|+ +-..+.+|+.||..+-+|+.|..
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R  700 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR  700 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence            346789999999999999999999999999999998886 333  2  555554 67889999999999999999874

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.65  E-value=0.096  Score=54.09  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=52.8

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhhHHHHHHHHhcCcee
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNV  145 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gdd~~ieQI~kQL~KLvdV  145 (472)
                      -|.+.|.+.|+||.|++++.++.+.|+||+.|.+-++.+.  |.+.|.+.. +...++..+.|.+-..+
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~  357 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWTY  357 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCcc
Confidence            4899999999999999999999999999999999876433  458888873 45566666777665443

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.61  E-value=0.17  Score=42.00  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=58.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C-hHHHHHHHHHHhcccceEEEEecCCch
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITHLP  392 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-d-e~~ieQIvkQL~KLidVi~V~dlt~~~  392 (472)
                      .++.+.+.++||-|.+++.+++  |-||..+.-..... +-.++.++++. + .+.++++.+.|++.=  .++.+.++.+
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~   76 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE   76 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence            4789999999999999999999  77888776665443 67778888774 3 478999999988743  3556677665


Q ss_pred             HHH
Q 012043          393 FAE  395 (472)
Q Consensus       393 ~V~  395 (472)
                      ...
T Consensus        77 ~~~   79 (85)
T cd04906          77 LAK   79 (85)
T ss_pred             HHH
Confidence            543

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.55  E-value=0.089  Score=40.32  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=39.3

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      +.|+||++.++...+++.|.||+.+..+..+.. -.+++++++.  +..+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH--HHHHHHHHHHHH
Confidence            578999999999999999999998877654332 3457777773  334444444444

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=94.50  E-value=0.091  Score=53.28  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK  378 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~K  378 (472)
                      ++|++.-.|+||+.++||++++.+|.||..++.--....+.--|.+.++.++  ...+++...|+.
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            3789999999999999999999999999999987765556665666666433  234555544444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.50  E-value=0.063  Score=58.48  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=59.8

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      |+|-+.-.|+||++.+|+.+++..++||.++.++..+..+..=|.+-++  +..-+.++++|+++.+|.+|..+
T Consensus       452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence            6787777899999999999999999999999999987776655555555  45567888888889999888765

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.45  E-value=0.11  Score=39.80  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=38.4

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhhHHHHHHHHhc
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      +.|+||++.++...+++.|.||+.+..+..+.. ..+++++..  ...+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence            578999999999999999999998876654432 247777763  234444444444

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.40  E-value=1.2  Score=42.35  Aligned_cols=137  Identities=22%  Similarity=0.259  Sum_probs=94.7

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCC-hhhHHHHHHHHhc-CceeeEEEe
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLNK-LVNVIKVED  150 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV~gd-d~~ieQI~kQL~K-LvdVikV~d  150 (472)
                      .+|+.++.|-.+|+||-|-++..=.+.-|-||-++.=...+..+ +  +.|++.+| +.....+.+-+++ =+.++++..
T Consensus         2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg   81 (170)
T COG2061           2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG   81 (170)
T ss_pred             cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence            36889999999999999999999999999999887755443322 3  78888887 5556667777733 355555543


Q ss_pred             cCCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 012043          151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK  215 (472)
Q Consensus       151 lt~~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs--------~~s--l~iE~TG~~~KIdafi~~L~~  215 (472)
                      ...  ..+-...||-=-+...-+.-|-.+-.+-+|.++|++        +.+  ++|+..| .+|++..++.|+.
T Consensus        82 ~~~--~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e  153 (170)
T COG2061          82 ARL--REKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE  153 (170)
T ss_pred             cCc--ceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence            332  222334555434444556678888889999999984        233  5555554 5777777777764

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.38  E-value=0.041  Score=46.01  Aligned_cols=63  Identities=16%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             EEEEEEcC-cchHHHHHHHHHhccCceeeeEeeeecCC---------Cc-EEEEEEeCChhhHHHHHHHHhcCce
Q 012043           81 TISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLVN  144 (472)
Q Consensus        81 tISIlVeN-~pGVL~RIagLFsRRGyNIeSLtVg~Ted---------~~-~iTIVV~gdd~~ieQI~kQL~KLvd  144 (472)
                      +++++-++ ++|.+++|+.+++.+|+||+.+.-= +..         +- .|.+.++|.+..++.+.++|.++-.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~   74 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELAS   74 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            36788899 9999999999999999999988752 211         22 3677788877788888888876543

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=94.37  E-value=0.22  Score=50.97  Aligned_cols=75  Identities=23%  Similarity=0.402  Sum_probs=61.0

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 012043          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V  385 (472)
                      +..+.+|.+.+.|+||.|-++-+.|+.||+|+..|.--|+.. ++-..+-|=+.|  ++..+.+..+.|.++-..+++
T Consensus       191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            456889999999999999999999999999999999999874 565666665665  556688888888877665555

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=94.24  E-value=0.19  Score=41.12  Aligned_cols=56  Identities=16%  Similarity=0.365  Sum_probs=44.2

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHHhcCcee
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNV  145 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL~KLvdV  145 (472)
                      ..+.||++.+|.+.|++.|.|++-++.++    .-++++++.++     +.+++|.+.|+++-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v   71 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV   71 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence            46789999999999999999999997522    44777777544     3788999999985444

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.12  E-value=0.14  Score=52.93  Aligned_cols=64  Identities=25%  Similarity=0.346  Sum_probs=48.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EGLSCITTVVPGTDESIGKLVQLLHKLI  380 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~--~~iSRiTIVv~gde~~ieQIvkQL~KLi  380 (472)
                      -|.+.+.+.|+||+|.++++++.+.|+||+.|.+-++-.  .++-|+++--   ++..++..+.|++-.
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~  355 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN---EEDRERAKALLEEFW  355 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC---HHHHHHHHHHHHhcC
Confidence            489999999999999999999999999999999976543  3565555543   344555555555443

>PRK08198 threonine dehydratase; Provisional

Probab=93.89  E-value=0.28  Score=51.31  Aligned_cols=65  Identities=11%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC---Cc--EEEEEEeC-ChhhHHHHHHHHhcC
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KA--LFTIVVSG-TERVLRQVVEQLNKL  142 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~--~iTIVV~g-dd~~ieQI~kQL~KL  142 (472)
                      +..++++.+.|+||.|.++..+++..|.||.+++......   .+  .++++++. +.+.+++|++.|++.
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            4579999999999999999999999999999999875321   23  26666663 455788899988664

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.88  E-value=0.55  Score=48.91  Aligned_cols=128  Identities=17%  Similarity=0.230  Sum_probs=89.3

Q ss_pred             EEEEEE---EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043           80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (472)
Q Consensus        80 htISIl---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~  156 (472)
                      ..+++.   +.|+||++.|+...|.+.|+||+.++.+.++  .-++++++.  +.++++.+.|++...-.....    -.
T Consensus       261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~~----i~  332 (401)
T TIGR00656       261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLDR----VE  332 (401)
T ss_pred             EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCce----EE
Confidence            457776   7899999999999999999999999876544  337788863  345666666666432211111    12


Q ss_pred             hhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043          157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (472)
Q Consensus       157 V~RELaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~  215 (472)
                      +.+.+++|.|--..     ..-..+++.....+.+|.-++....-+-+.=+.+..+..++.|..
T Consensus       333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~  396 (401)
T TIGR00656       333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE  396 (401)
T ss_pred             EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence            66788888886542     334578888888889998888766666666666777777777653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.84  E-value=0.14  Score=41.99  Aligned_cols=56  Identities=14%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH----HHH-HHHHHHhcccce
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE----SIG-KLVQLLHKLIDL  382 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~----~ie-QIvkQL~KLidV  382 (472)
                      +.+.||++.+|...|++.|+||+-++.++      -.++++++.++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            57889999999999999999999997522      668999987653    344 688888885444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.70  E-value=0.077  Score=44.36  Aligned_cols=64  Identities=23%  Similarity=0.335  Sum_probs=48.7

Q ss_pred             EEEEEeC-chhHHHHHHHHHhccCceeeeeeeee-------cCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043          317 LSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGP-------AEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (472)
Q Consensus       317 LSilVeN-~pGVL~RVtgLFsRRgyNIeSLtVg~-------te~~~iSRiTIVv~gde~~ieQIvkQL~KLi  380 (472)
                      ++++-.+ ++|.+++|+.+++.+|.||+.|.-=.       +..+...-|.+-+.+.+...+.+.++|.++-
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la   73 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA   73 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            6788888 99999999999999999999987621       1122455677777877677788888777553

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.68  E-value=0.12  Score=54.48  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             EEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043          314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (472)
Q Consensus       314 ~htLSilVe-N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd  365 (472)
                      .|.|.+.+. |+||+|.+|+++|+++|+||.+|....+....+. +-|-+.+.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~  346 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPG  346 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEecc
Confidence            488999995 9999999999999999999999999554443333 66666643

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=93.51  E-value=0.4  Score=52.17  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCe--EEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043          308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGL--SCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       308 ~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~i--SRiTIVv~gde~~ieQIvkQL~KLidVi~V  385 (472)
                      +..+..+-+|.+.+.|+||.|.++-.+|+.+|+|+..|.--|+....-  ..+-|=++|+...+.++++.|.+..+.+.|
T Consensus        25 ~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~  104 (464)
T TIGR01270        25 EEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEV  104 (464)
T ss_pred             cCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhccccee
Confidence            445556677777789999999999999999999999998888754332  355566778888899999999998887666


Q ss_pred             E
Q 012043          386 Q  386 (472)
Q Consensus       386 ~  386 (472)
                      .
T Consensus       105 ~  105 (464)
T TIGR01270       105 S  105 (464)
T ss_pred             c
Confidence            4

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK11898 prephenate dehydratase; Provisional

Probab=93.46  E-value=0.42  Score=48.45  Aligned_cols=66  Identities=18%  Similarity=0.351  Sum_probs=49.9

Q ss_pred             EEEEEEEEcCc-chHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043           79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKLVN  144 (472)
Q Consensus        79 ~htISIlVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~-iTIVV~g--dd~~ieQI~kQL~KLvd  144 (472)
                      +-.|.+.+.|+ ||.|.++.+.|+++|+|+..|---|....  .+ +=|-++|  ++..++++++.|++...
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            56677777665 99999999999999999999998886543  22 3344444  44478888888888654

>PRK12483 threonine dehydratase; Reviewed

Probab=93.42  E-value=2  Score=47.36  Aligned_cols=132  Identities=13%  Similarity=0.199  Sum_probs=91.2

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEE--EeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIV--V~gdd~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      +++.+++...++||-|.+++.+++.+  ||..+.--..... ..+.++  +.+.++..++|+++|++.=  .++.++++.
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn  419 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD  419 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence            57899999999999999999999988  9998776542222 234444  4444444599999997743  577888887


Q ss_pred             hh---------------hhhheeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe-----cCCE----EEEEEeCChhHHHH
Q 012043          155 PH---------------VERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI-----SEHA----LTIEVTGDPGKMVA  208 (472)
Q Consensus       155 ~~---------------V~RELaLIKV~~~~~~r~eI~~l~~~FrAk--IVDv-----s~~s----l~iE~TG~~~KIda  208 (472)
                      +.               +.|| +|+.|..+ |......+.++.++-+  |-..     +.+.    +=|++.  .++.+.
T Consensus       420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~  495 (521)
T PRK12483        420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA  495 (521)
T ss_pred             HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence            65               3444 47777775 6777888888888762  2221     1111    236763  377788


Q ss_pred             HHHHhccCC
Q 012043          209 VQRNLSKFG  217 (472)
Q Consensus       209 fi~~L~~fG  217 (472)
                      |++.|+..|
T Consensus       496 ~~~~l~~~g  504 (521)
T PRK12483        496 LDAALAALG  504 (521)
T ss_pred             HHHHHHHCC
Confidence            999998766

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=93.33  E-value=0.22  Score=40.74  Aligned_cols=56  Identities=11%  Similarity=0.213  Sum_probs=44.9

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--H-HHHHHHHHHhcccce
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--E-SIGKLVQLLHKLIDL  382 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~-~ieQIvkQL~KLidV  382 (472)
                      ....||++.+|.+.|++.|.|++-+..++      ..++++++.++  + .++.|.+-|+|+-+|
T Consensus        11 m~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v   69 (73)
T cd04934          11 KSLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV   69 (73)
T ss_pred             CccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence            35679999999999999999999997522      66889988543  3 788999999985433

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.16  E-value=0.38  Score=49.21  Aligned_cols=71  Identities=20%  Similarity=0.425  Sum_probs=55.2

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEe--CChhhHHHHHHHHhcCceeeEE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVS--GTERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~--gdd~~ieQI~kQL~KLvdVikV  148 (472)
                      .+.+|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . |-|=+.  .++..+.+..+-|.++-..+|+
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            47788899999999999999999999999999998887743 3 2 444454  4566677777777776665554

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.14  E-value=0.43  Score=50.55  Aligned_cols=71  Identities=15%  Similarity=0.112  Sum_probs=56.6

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeC--ChHHHHHHHHHHhcccceEE
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPG--TDESIGKLVQLLHKLIDLHE  384 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~  384 (472)
                      +-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+... +-..+-|=+.|  ++..+++..++|++.-.-++
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~k  370 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSLK  370 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEE
Confidence            5677777889999999999999999999999999887764 55666666776  44568889999888655333

>PRK03059 PII uridylyl-transferase; Provisional

Probab=93.10  E-value=0.24  Score=57.19  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=51.3

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChhhHHHHHHHHhcCcee
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV  145 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g----dd~~ieQI~kQL~KLvdV  145 (472)
                      ....|.|.+.|+||+|.+|++.|++.|+||.+-.+..+.+.-.=++.|.+    +++..+.|.+.|.+.++|
T Consensus       785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            45689999999999999999999999999999888877222122333332    346678888888776654

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.08  E-value=0.27  Score=51.86  Aligned_cols=51  Identities=25%  Similarity=0.391  Sum_probs=40.2

Q ss_pred             EEEEEEEEc-CcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCCh
Q 012043           79 RHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTE  129 (472)
Q Consensus        79 ~htISIlVe-N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~gdd  129 (472)
                      -+.|.+.+. |+||+|.+|+++|+++|+||.+|....+..... +-|-+.+.+
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~  347 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGS  347 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccc
Confidence            578999995 999999999999999999999999854443333 666666433

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.07  E-value=0.44  Score=38.47  Aligned_cols=52  Identities=15%  Similarity=0.399  Sum_probs=42.7

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHHhc
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK  141 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL~K  141 (472)
                      ..+.||++.||...|++.|+|++.++.++    ..+++++..++     ..++.|.+-|+|
T Consensus        11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~----~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE----VSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEcCC----cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            56789999999999999999999886322    45788887554     488899999999

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.07  E-value=0.29  Score=40.13  Aligned_cols=56  Identities=13%  Similarity=0.392  Sum_probs=42.3

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh----hHH-HHHHHHhcCcee
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV  145 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~----~ie-QI~kQL~KLvdV  145 (472)
                      +.+.||++.+|...|++.|+||+-++.++    .-++++++.++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            57889999999999999999999997522    447777776552    344 577888885443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.01  E-value=0.5  Score=39.19  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC-C-hhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g-d-d~~ieQI~kQL~KLvdVikV~dlt~~~~  156 (472)
                      .++.+.+.|+||-|.+++.+++  |.||..+.-.... +.+.+.++++. + .+.++++.+.|++.=  .++.++++.+.
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~   77 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL   77 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence            4789999999999999999999  7788876665433 33445555542 3 467888888887743  35566666654


Q ss_pred             h
Q 012043          157 V  157 (472)
Q Consensus       157 V  157 (472)
                      .
T Consensus        78 ~   78 (85)
T cd04906          78 A   78 (85)
T ss_pred             H
Confidence            4

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=92.75  E-value=0.49  Score=35.31  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=38.8

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL  379 (472)
                      ..+.||++.++.+.+++.|.|++.++..  +    .+++++++.  ...+++.+-|+|.
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~--~d~~~~~~~l~~~   60 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDE--DDAEKAVRALHEA   60 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeH--HHHHHHHHHHHHH
Confidence            4577999999999999999999999842  1    568888884  4455556666554

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=92.70  E-value=0.46  Score=45.31  Aligned_cols=71  Identities=21%  Similarity=0.376  Sum_probs=55.9

Q ss_pred             ceEEEEEEEE--cCcchHHHHHHHHHhccCceeeeEeeeec--CCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043           77 VKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        77 ~~~htISIlV--eN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~  149 (472)
                      |--+.|.+..  .+.||+|+.|+++.+.||++|..+-....  .++..+||++++  ..-..++.||.|+--|.+|.
T Consensus        91 lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~  165 (167)
T COG2150          91 LGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS  165 (167)
T ss_pred             cCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence            4467888887  46899999999999999999998776633  344568999874  45566889999998888875

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=92.65  E-value=0.35  Score=37.05  Aligned_cols=51  Identities=20%  Similarity=0.328  Sum_probs=40.2

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      .+.||++.++...+++.|.|++.++-+.++    .++.++++.+  ..+++++.|+|
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~--~~~~a~~~lh~   62 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK--DAVKALNIIHT   62 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence            468999999999999999999999877643    7788888854  35555666655

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=92.32  E-value=0.74  Score=46.68  Aligned_cols=68  Identities=22%  Similarity=0.326  Sum_probs=53.0

Q ss_pred             EEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 012043          314 SHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID  381 (472)
Q Consensus       314 ~htLSilVeN~-pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd--e~~ieQIvkQL~KLid  381 (472)
                      +-.|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|... +.-..+-+=++|+  +..++++++.|++.-.
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            56777778775 9999999999999999999999988654 3445555555654  3478999999988655

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=92.30  E-value=0.36  Score=36.92  Aligned_cols=49  Identities=14%  Similarity=0.327  Sum_probs=39.8

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHH
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLL  376 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL  376 (472)
                      .++||+..+|..+|.+.|.|++-++.++      -.+++++..++  +.++.+++.|
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence            4679999999999999999999996422      56889998765  6777777765

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PRK05092 PII uridylyl-transferase; Provisional

Probab=92.30  E-value=0.46  Score=55.34  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEE-e----CChhhHHHHHHHHhcCce
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVV-S----GTERVLRQVVEQLNKLVN  144 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV-~----gdd~~ieQI~kQL~KLvd  144 (472)
                      ....|.|...|+||+|.+|++.|++.|+||.+..+. |.+.. .  +.|.- +    .++...+.|.+.|.+.++
T Consensus       842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~-T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA-TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE-EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            346899999999999999999999999999999998 44432 2  33332 1    234457778888876653

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=92.17  E-value=1.4  Score=41.87  Aligned_cols=115  Identities=23%  Similarity=0.267  Sum_probs=84.3

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhcc-cceEEEEec
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKL-IDLHEVQDI  388 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd-e~~ieQIvkQL~KL-idVi~V~dl  388 (472)
                      +|+-+|.|...|+||=|-++..=.|.-|-||-|+.=...+. .+--+.-|++.+| ++...++.+-+++. +.++++...
T Consensus         3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~   82 (170)
T COG2061           3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA   82 (170)
T ss_pred             ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence            47899999999999999999999999999998877665443 5677788888887 66677777777332 334443221


Q ss_pred             CCchHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEec
Q 012043          389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS  428 (472)
Q Consensus       389 t~~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs  428 (472)
                        ..-.+-...||-=-+...-+.-|-++-.+-+|.++|++
T Consensus        83 --~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~  120 (170)
T COG2061          83 --RLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLS  120 (170)
T ss_pred             --CcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEE
Confidence              22223334555544566667788888889999999987

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=92.02  E-value=0.57  Score=49.62  Aligned_cols=66  Identities=12%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvd  144 (472)
                      +-.|.+.+.|+||.|.++.+.|+.||+|+.+|---|+... + + |=|-+.|  ++..+++..++|++.-.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~  367 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR  367 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            5667777899999999999999999999999998887765 2 2 4555665  44568888888877654

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=91.91  E-value=0.49  Score=36.16  Aligned_cols=50  Identities=14%  Similarity=0.402  Sum_probs=39.0

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hhHHHHHHHH
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL  139 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~~ieQI~kQL  139 (472)
                      ..++||+..+|...|.+.|.|++.++.++    .-+++++..++  +.++.+++.|
T Consensus        10 m~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          10 MNGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             cCcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence            34679999999999999999999996422    45888887655  5677776665

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=91.85  E-value=0.85  Score=49.35  Aligned_cols=65  Identities=15%  Similarity=0.305  Sum_probs=52.2

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhhHHHHHHHHhcCc
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV  143 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-d~~ieQI~kQL~KLv  143 (472)
                      +-.|.+.+.|+||.|.+|..+|+.+|+|+..|---++....  . +=|-++|. +..++++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            56788888999999999999999999999999888765442  2 44555565 467888999888876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=91.84  E-value=0.56  Score=38.32  Aligned_cols=56  Identities=16%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--h-hHHHHHHHHhcCcee
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVNV  145 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~-~ieQI~kQL~KLvdV  145 (472)
                      .-..||.+.+|.+.|++.|.|++-+..++    .-+++++..++  . .++.|.+-|+|+-+|
T Consensus        11 m~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~v   69 (73)
T cd04934          11 KSLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGTV   69 (73)
T ss_pred             CccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence            34579999999999999999999997522    44777776432  3 788899999884433

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=91.56  E-value=0.62  Score=35.40  Aligned_cols=52  Identities=25%  Similarity=0.450  Sum_probs=39.9

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      ..+.||++.|+...+++.|+|++.++-+..+    -+++++++.+  ..++.++.|++
T Consensus        11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~--~~~~~~~~lh~   62 (66)
T cd04922          11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDED--DATKALRAVHE   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence            3478999999999999999999999876533    7788888853  34555555554

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK08210 aspartate kinase I; Reviewed

Probab=91.54  E-value=2.9  Score=43.82  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=79.4

Q ss_pred             EEEEEEEcCc-chHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhh
Q 012043           80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVE  158 (472)
Q Consensus        80 htISIlVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~  158 (472)
                      ..|++.-.|. ||.++||.+.|.+.|+||+.++...  +  -+++++..  ..++++.+.|+++-         ..-.+.
T Consensus       272 ~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~--~~~~~a~~~l~~~~---------~~v~~~  336 (403)
T PRK08210        272 TQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD--EDSEKAKEILENLG---------LKPSVR  336 (403)
T ss_pred             EEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH--HHHHHHHHHHHHhC---------CcEEEe
Confidence            3556655555 9999999999999999999997662  1  35566653  33556666666631         022367


Q ss_pred             hheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043          159 RELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (472)
Q Consensus       159 RELaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (472)
                      +.+++|.|-...     ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus       337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh  397 (403)
T PRK08210        337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH  397 (403)
T ss_pred             CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence            788998886532     33457788888888888876655444444445555666666654

>PLN02317 arogenate dehydratase

Probab=91.44  E-value=0.95  Score=48.23  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC---------------CeEEEEEEEeCC--hHHHHHHHHHH
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE---------------GLSCITTVVPGT--DESIGKLVQLL  376 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~---------------~iSRiTIVv~gd--e~~ieQIvkQL  376 (472)
                      +..|.+.++|+||+|.++...|+.||+|+..|.--|.-..               .-..+-|=+++.  +..+++.++.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            5667777799999999999999999999999998886544               223444445554  66788888888


Q ss_pred             hcccceEE
Q 012043          377 HKLIDLHE  384 (472)
Q Consensus       377 ~KLidVi~  384 (472)
                      ++.-.-++
T Consensus       363 ~~~~~~lr  370 (382)
T PLN02317        363 QEFATFLR  370 (382)
T ss_pred             HHhcCeEE
Confidence            87655333

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=91.31  E-value=0.54  Score=39.24  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--------HHHHHHHHHhc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--------SIGKLVQLLHK  378 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~--------~ieQIvkQL~K  378 (472)
                      ..+.||++.+|...|++.|+||+-++.++      ..+.++++.++.        .++++...|+|
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd~~~~~~~~~~l~~~~~~~~~   70 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSKLWSRELIQQELDHVVEELEK   70 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence            46789999999999999999999996522      668999996543        34455555544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=91.29  E-value=0.68  Score=53.32  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=51.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC------hHHHHHHHHHHhccc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT------DESIGKLVQLLHKLI  380 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd------e~~ieQIvkQL~KLi  380 (472)
                      ...|.|...|+||+|.+|++.|++.|+||.+-.+..|.+.-+-..-.|.+.+      ++..++|.+.|.+.+
T Consensus       668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L  740 (850)
T TIGR01693       668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL  740 (850)
T ss_pred             eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999988876555555554422      334666666665544

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=91.04  E-value=0.69  Score=35.04  Aligned_cols=52  Identities=29%  Similarity=0.402  Sum_probs=39.7

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL  379 (472)
                      .+.||++.++...+++.|+|++-++.+..+    -+++++++.  ...+++.+-|++.
T Consensus        12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~--~~~~~~~~~Lh~~   63 (66)
T cd04924          12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAE--DDGWAAVKAVHDE   63 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeH--HHHHHHHHHHHHH
Confidence            467999999999999999999999876643    557788874  3455556666554

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=90.87  E-value=0.63  Score=53.28  Aligned_cols=63  Identities=17%  Similarity=0.214  Sum_probs=45.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C--hHHHHHHHHHHhcc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T--DESIGKLVQLLHKL  379 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-d--e~~ieQIvkQL~KL  379 (472)
                      ..+.|+..|+||++++|+|+|++.|+||.+-.+-. .+..+- .++.|.+ +  ....+++.+.|++.
T Consensus       600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~l-d~F~V~~~~~~~~~~~~l~~~L~~~  665 (774)
T PRK03381        600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAV-LEFVVSPRFGSPPDAALLRQDLRRA  665 (774)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEE-EEEEEECCCCCcchHHHHHHHHHHH
Confidence            58999999999999999999999999999988864 444444 4444442 1  11235555565544

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=90.87  E-value=1.1  Score=48.63  Aligned_cols=67  Identities=12%  Similarity=0.199  Sum_probs=54.0

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI  380 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd-e~~ieQIvkQL~KLi  380 (472)
                      +.+|.+.+.|+||.|.++..+|+.+|+|+..|.--|+.. +.-..+-|-++|. +..++++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            567888889999999999999999999999999888654 3334455556665 477899999998876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK05007 PII uridylyl-transferase; Provisional

Probab=90.77  E-value=0.78  Score=53.34  Aligned_cols=66  Identities=9%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhccc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLI  380 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~KLi  380 (472)
                      ..+.|...|+||+|.+|+|+|++.|+||.+-.+..+.+.-.--.-.|.+.+     ++.+++|.+.|.+.+
T Consensus       702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL  772 (884)
T PRK05007        702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL  772 (884)
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999998888775555555554432     345666777766644

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=90.75  E-value=0.75  Score=34.94  Aligned_cols=52  Identities=27%  Similarity=0.357  Sum_probs=39.1

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      +.+.||++.|+...+++.|.|++.++.+.++    -+++++++.+  ..++..+.|+|
T Consensus        11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~--d~~~~~~~lh~   62 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNE--DADKAVKAIYE   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence            3468999999999999999999999876643    5678888853  34444555544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=90.73  E-value=0.26  Score=42.75  Aligned_cols=52  Identities=15%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd  365 (472)
                      +++..|++.=.|+||+.+.|++++++.|.||.-  ++.|--.++-.|-+.|+-+
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~~   52 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDIS   52 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcCC
Confidence            468899999999999999999999999999975  5666667888888888865

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=90.49  E-value=0.73  Score=35.28  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=37.5

Q ss_pred             cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      .+.||++.|+...+++.|.|++.++.+..+  ..+.++++.++  .+.+.+.|+|
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~   62 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT   62 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence            468999999999999999999999876633  45778887533  3444444443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=90.48  E-value=1.2  Score=48.69  Aligned_cols=72  Identities=19%  Similarity=0.219  Sum_probs=58.0

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--c-E-EEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~-~-iTIVV~gdd~~ieQI~kQL~KLvdVikV~  149 (472)
                      .+-+|.+.+.|+||.|.++..+|+.+|+|+..|---++...  . . +=|-++|+...+.++++.|.+..+.++|.
T Consensus        30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~  105 (464)
T TIGR01270        30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS  105 (464)
T ss_pred             ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence            45567777799999999999999999999999988776543  2 3 44556788888999999999988876664

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=90.45  E-value=1.5  Score=32.64  Aligned_cols=50  Identities=16%  Similarity=0.328  Sum_probs=36.8

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      ..+.||++.|+.+.+++.|.|++.++..    +..++++++.  ...+++.+-|+|
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~d~~~~~~~l~~   59 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDE--DDAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeH--HHHHHHHHHHHH
Confidence            4577999999999999999999999832    2457888874  334444555544

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=90.44  E-value=2.4  Score=42.25  Aligned_cols=75  Identities=12%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             eEEEEEEEEeCchh--HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEE--EeC-ChHHHHHHHHHHhcccceEEEEe
Q 012043          313 RSHTLSMLVNNTPG--VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTV--VPG-TDESIGKLVQLLHKLIDLHEVQD  387 (472)
Q Consensus       313 ~~htLSilVeN~pG--VL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIV--v~g-de~~ieQIvkQL~KLidVi~V~d  387 (472)
                      ..|.+++.+.+.++  ++.++...+...+|.+.++.+.+.++++-..|+..  ..+ ++..+++++.+|.....|.+|.=
T Consensus       141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~W  220 (225)
T PRK15385        141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHW  220 (225)
T ss_pred             eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEEE
Confidence            35788888888664  69999999999999999999988766664445444  443 57789999999999999998863

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=90.23  E-value=4.7  Score=43.77  Aligned_cols=124  Identities=20%  Similarity=0.300  Sum_probs=88.9

Q ss_pred             EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hhHHHHHHHHhcCceeeEEEecCCchhh
Q 012043           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNEPHV  157 (472)
Q Consensus        80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~~ieQI~kQL~KLvdVikV~dlt~~~~V  157 (472)
                      +.-.....+++|++.||.+.+++.|+|++-+..+.++..  +++++++++  ...+.+.+....+..  .+       .+
T Consensus       311 ~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v-------~~  379 (447)
T COG0527         311 TVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EV-------EV  379 (447)
T ss_pred             EEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eE-------Ee
Confidence            334444556679999999999999999999988877665  888887554  223333333332333  22       26


Q ss_pred             hhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043          158 ERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (472)
Q Consensus       158 ~RELaLIKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (472)
                      ++.+++|-+--.     +.--.++++-...++-.|.-++...+.|-+.=+.+..+..++.|.
T Consensus       380 ~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH  441 (447)
T COG0527         380 EEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH  441 (447)
T ss_pred             eCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence            778888887543     234568999999999999999977788888778888877777765

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=89.75  E-value=0.92  Score=52.56  Aligned_cols=67  Identities=12%  Similarity=0.088  Sum_probs=51.5

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhcccc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLID  381 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~KLid  381 (472)
                      ..+.|...|+||+|.+|+|.|++.|+||.+=.+..+.+.-+--.-.|.+.+     ++.+++|.+.|++.++
T Consensus       678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~  749 (854)
T PRK01759        678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALN  749 (854)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            489999999999999999999999999999888777666555544554422     3456677777776554

>PLN02317 arogenate dehydratase

Probab=89.29  E-value=1.8  Score=46.20  Aligned_cols=66  Identities=14%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC----------------cE-EEEEEeCC--hhhHHHHHHHH
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSGT--ERVLRQVVEQL  139 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~----------------~~-iTIVV~gd--d~~ieQI~kQL  139 (472)
                      +-.|.+.++|+||.|.++...|+.||+|+..|---|....                .+ |=|-++|.  +..+++.++.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            4567777799999999999999999999999987775443                12 33445554  56678888888


Q ss_pred             hcCce
Q 012043          140 NKLVN  144 (472)
Q Consensus       140 ~KLvd  144 (472)
                      .+.-.
T Consensus       363 ~~~~~  367 (382)
T PLN02317        363 QEFAT  367 (382)
T ss_pred             HHhcC
Confidence            77554

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=89.26  E-value=0.84  Score=36.26  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=35.7

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 012043          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH  377 (472)
Q Consensus       323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~  377 (472)
                      |.||++++++..++.-|+||--++   |    ...+.++|+.  +.+++.++-|+
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is---S----~~~~~ilV~~--~~~~~A~~~L~   64 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS---S----EISISILVKE--EDLEKAVEALH   64 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE---E----SSEEEEEEEG--GGHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE---E----eeeEEEEEeH--HHHHHHHHHhc
Confidence            599999999999999999998877   3    3567788884  46666666655

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=89.20  E-value=1.4  Score=33.40  Aligned_cols=51  Identities=14%  Similarity=0.293  Sum_probs=37.4

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHh
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~  140 (472)
                      ..+.||++.||...+++.|+|++.++.+..+  ..++++++.++  .++..+.|+
T Consensus        11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh   61 (66)
T cd04922          11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVH   61 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHH
Confidence            3578999999999999999999999875532  45888887433  344444444

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=89.06  E-value=1.2  Score=37.14  Aligned_cols=40  Identities=10%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd  129 (472)
                      ..+.||++.+|-..|++.|+||+-++.++    .-++++++.++
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd   50 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK   50 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence            46789999999999999999999997522    44777777544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02550 threonine dehydratase

Probab=88.82  E-value=8.3  Score=43.41  Aligned_cols=135  Identities=17%  Similarity=0.286  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      .+++.+.+..-++||.|.+++.++..+  ||-.+.--..... ..+.+.++ -+.+.+++|+..|++.=  .++.|+++.
T Consensus       415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            356889999999999999999999987  9998877653222 23444443 24678999999998854  688888887


Q ss_pred             hhhhh-------h------eeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----cC-----CEEEEEEeCChhHHHHHH
Q 012043          155 PHVER-------E------LMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----SE-----HALTIEVTGDPGKMVAVQ  210 (472)
Q Consensus       155 ~~V~R-------E------LaLIKV~~~~~~r~eI~~l~~~FrAk--IVDv----s~-----~sl~iE~TG~~~KIdafi  210 (472)
                      +...-       |      =+|+.|..+ +......+.++.++-+  |-..    +.     =.+=||+.  +++++.|+
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l~  567 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEFK  567 (591)
T ss_pred             hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHHH
Confidence            65421       1      135666654 5555777777777763  2211    10     11346775  47888888


Q ss_pred             HHhccCCc
Q 012043          211 RNLSKFGI  218 (472)
Q Consensus       211 ~~L~~fGI  218 (472)
                      +.|+..|.
T Consensus       568 ~~l~~~gy  575 (591)
T PLN02550        568 SRANALGY  575 (591)
T ss_pred             HHHHHcCC
Confidence            88887663

>PRK02047 hypothetical protein; Provisional

Probab=88.82  E-value=4.6  Score=34.72  Aligned_cols=73  Identities=12%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCce--eeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYN--IQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyN--IeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      ..+.+.+...|.++..+.|..++.++...  -++++.-++....+-.+|+.+. .++++++.|-+.|.+.-.|.-|
T Consensus        15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v   90 (91)
T PRK02047         15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV   90 (91)
T ss_pred             CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence            45899999999999999999999999555  6679999999999999999988 5788999999999998888544

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=88.69  E-value=1.2  Score=51.81  Aligned_cols=66  Identities=8%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE-e--C----ChhhHHHHHHHHhcCc
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV-S--G----TERVLRQVVEQLNKLV  143 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV-~--g----dd~~ieQI~kQL~KLv  143 (472)
                      ..-.|.|.+.|+||+|.+|++.|++.|.||.+-.+..+.+.-.=++.| +  |    ++...++|.+.|.+.+
T Consensus       813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999998773222223333 2  2    2345677777776544

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=88.68  E-value=0.47  Score=41.20  Aligned_cols=46  Identities=30%  Similarity=0.490  Sum_probs=38.3

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEE
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIV  124 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIV  124 (472)
                      +++..|++.=.|+||+.+.|++++++.|.||.-++  .|--.+++|+.
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~   46 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMI   46 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceee
Confidence            46889999999999999999999999999998554  66556665554

>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B

Probab=88.53  E-value=1  Score=39.80  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=53.0

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~----iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      +-|.+|..|..+-...|..+.+++.++....+ +    ++|.+.|+-..+-+.+++|+++-.++.|++++
T Consensus        51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~  120 (144)
T PF04350_consen   51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence            45899999999999999999999999655443 2    78889999999999999999999999999876

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=88.45  E-value=1.1  Score=35.69  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd  365 (472)
                      ..|.||+++++.+.++++|.||+-++.. .+     .++++++.+
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~~   47 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDGE   47 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEchh
Confidence            3578999999999999999999999555 22     377888853

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=88.39  E-value=1.6  Score=33.08  Aligned_cols=51  Identities=18%  Similarity=0.292  Sum_probs=37.5

Q ss_pred             cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      .+.||++.++...+++.|.|++-++.+..+  ..++++++.+  ..+++.+.|++
T Consensus        12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~--~~~~~~~~Lh~   62 (66)
T cd04924          12 RGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED--DGWAAVKAVHD   62 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence            467999999999999999999999876533  4477777643  34445555544

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=88.23  E-value=4.8  Score=42.81  Aligned_cols=115  Identities=21%  Similarity=0.260  Sum_probs=76.4

Q ss_pred             chHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc---CceeeEEEecCCchhhhhheeeEEE
Q 012043           90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL  166 (472)
Q Consensus        90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K---LvdVikV~dlt~~~~V~RELaLIKV  166 (472)
                      ||+++||...|++.|+||+.++.+.++  .-++++++.++  .+...+.|.+   ...+..+.       +.+.+++|.|
T Consensus       315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv  383 (441)
T TIGR00657       315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL  383 (441)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence            899999999999999999999744332  23777776433  4444444433   23333333       5678899998


Q ss_pred             eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043          167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (472)
Q Consensus       167 ~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~  215 (472)
                      ...     +.--.++++.....+-.|.-++.....|-++=+.+..+..++.|..
T Consensus       384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~  437 (441)
T TIGR00657       384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN  437 (441)
T ss_pred             EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence            432     3445688888888888888775444445555555666666766653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK08639 threonine dehydratase; Validated

Probab=88.16  E-value=3.6  Score=43.66  Aligned_cols=81  Identities=12%  Similarity=0.081  Sum_probs=62.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEecCC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH  390 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtg-LFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~dlt~  390 (472)
                      +...+++.+-++||-|.++.. +++.++ ||-.+.--.....+..++.++++. +.+.++++..+|++.=  .++.++++
T Consensus       335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~  411 (420)
T PRK08639        335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP  411 (420)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence            567999999999999999999 555555 999987654445566688888884 4578999999999864  45667777


Q ss_pred             chHHHH
Q 012043          391 LPFAER  396 (472)
Q Consensus       391 ~~~V~R  396 (472)
                      .+.++.
T Consensus       412 ~~~~~~  417 (420)
T PRK08639        412 NEPLYN  417 (420)
T ss_pred             CHHHHH
Confidence            766553

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=87.91  E-value=1.9  Score=32.67  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=33.2

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd  128 (472)
                      +.+.||++.|+...+++.|.|++.++.+.++  ..+++++..+
T Consensus        11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~   51 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNE   51 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHH
Confidence            3468999999999999999999999876533  4577888753

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=87.82  E-value=8.2  Score=41.62  Aligned_cols=116  Identities=12%  Similarity=0.204  Sum_probs=73.9

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--hH-HHHHHHHhcCceeeEEEecCCchhhhhheeeE
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELMLI  164 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~--~i-eQI~kQL~KLvdVikV~dlt~~~~V~RELaLI  164 (472)
                      .+||+++||.+.|++.|.||+.++    ....-++++++.++.  .. ..+.+.|++-..+..|.       +.+.+++|
T Consensus       320 ~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~-------~~~~va~V  388 (454)
T PRK09034        320 REVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELE-------IEHDLAII  388 (454)
T ss_pred             CCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEE-------EeCCEEEE
Confidence            379999999999999999999983    222347888875442  11 45566665544433333       66789999


Q ss_pred             EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 012043          165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (472)
Q Consensus       165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~  214 (472)
                      .+--.     +..-..+++.....+..|.-++  .....|-++=+.+..+..++.|.
T Consensus       389 sivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH  445 (454)
T PRK09034        389 MVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY  445 (454)
T ss_pred             EEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence            98432     2345578888888888885553  22233444444444555555554

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=87.72  E-value=1.5  Score=32.19  Aligned_cols=53  Identities=30%  Similarity=0.444  Sum_probs=39.6

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL  379 (472)
                      ..+++|++.++...|++.+.|+..++.+..+    .+++++++.  ...+.+.+.|+|.
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~--~~~~~~~~~l~~~   62 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDE--DDADKAVKALHEE   62 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeH--HHHHHHHHHHHHH
Confidence            4478999999999999999999998776522    557777774  4456666666654

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>TIGR02079 THD1 threonine dehydratase

Probab=87.52  E-value=4.5  Score=42.95  Aligned_cols=81  Identities=12%  Similarity=0.105  Sum_probs=63.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEecCC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH  390 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtg-LFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~dlt~  390 (472)
                      +...+++.+-++||-|.++.. +++.++ ||-.+.-......+..++.+.++. +.+.+++|.+.|++.=  .++.++++
T Consensus       324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~  400 (409)
T TIGR02079       324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE  400 (409)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence            468999999999999999999 555555 999777665556678889988884 4578899999998864  46667887


Q ss_pred             chHHHH
Q 012043          391 LPFAER  396 (472)
Q Consensus       391 ~~~V~R  396 (472)
                      .+.++.
T Consensus       401 ~~~~~~  406 (409)
T TIGR02079       401 NDILYN  406 (409)
T ss_pred             CHHHHH
Confidence            766654

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=87.39  E-value=4.8  Score=40.23  Aligned_cols=73  Identities=10%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             ceEEEEEEEEcCcch--HHHHHHHHHhccCceeeeEeeeecCCCc--EEE--EEEeC-ChhhHHHHHHHHhcCceeeEEE
Q 012043           77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFT--IVVSG-TERVLRQVVEQLNKLVNVIKVE  149 (472)
Q Consensus        77 ~~~htISIlVeN~pG--VL~RIagLFsRRGyNIeSLtVg~Ted~~--~iT--IVV~g-dd~~ieQI~kQL~KLvdVikV~  149 (472)
                      ...|.+++.+.++++  +..++...+...+|.+.++.+.+.++++  .++  +..++ ++..+++++.+|.....|.+|.
T Consensus       140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            346788988888665  6999999999999999999998765554  344  44443 5788999999999999999886

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=87.32  E-value=2.7  Score=31.25  Aligned_cols=50  Identities=24%  Similarity=0.393  Sum_probs=37.1

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      ..+.||++.++...+++.|.|++.++..     + .+++++++.  ...+++.+-|++
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~--~~~~~~~~~l~~   59 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDE--DDAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeH--HHHHHHHHHHHH
Confidence            4577999999999999999999999842     1 557788874  344555555554

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08526 threonine dehydratase; Provisional

Probab=86.63  E-value=3.1  Score=44.18  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=56.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHHHHHHHHHhcc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL  379 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~-gde~~ieQIvkQL~KL  379 (472)
                      +.+.+.+.+.++||-|.++..++++.|-||-.+.-....   ..+-.+++++++ -+.+.+++|...|++.
T Consensus       325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~  395 (403)
T PRK08526        325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK  395 (403)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            568999999999999999999999999999998885533   347788888888 4667899999988653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=86.32  E-value=2.2  Score=49.77  Aligned_cols=65  Identities=18%  Similarity=0.345  Sum_probs=48.2

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC---hHHHHHHHHHHhcc
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKL  379 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd---e~~ieQIvkQL~KL  379 (472)
                      ..+.|+..|+||++++|+|+|++.|+||-+-.+-.+.+.-.--.-.|.+.+   ++..+++.+.|++.
T Consensus       691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~  758 (869)
T PRK04374        691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQV  758 (869)
T ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Confidence            478999999999999999999999999999888777665554444444422   23455566665553

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=86.08  E-value=2.3  Score=31.17  Aligned_cols=52  Identities=23%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      ..+++|++.++...|++.|.|+..++.+..  ...++++++.  ...+.+.+.|+|
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~   61 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHE   61 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHH
Confidence            447899999999999999999998876542  2336677764  334445555544

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=85.76  E-value=2.2  Score=35.85  Aligned_cols=60  Identities=17%  Similarity=0.351  Sum_probs=48.3

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC---hHHHHHHHHHHhcccceEEE
Q 012043          320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       320 lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd---e~~ieQIvkQL~KLidVi~V  385 (472)
                      +.+++.|.+.|+..+|.+.|.++|-+.      .|+-.|+++++.+   ++.+++|++.|++-.+.-.+
T Consensus        10 ~Mn~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i   72 (76)
T cd04911          10 LMNREVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI   72 (76)
T ss_pred             hccchhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence            457899999999999999999999863      3566699999976   55888888998886555443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=85.59  E-value=2.2  Score=49.54  Aligned_cols=64  Identities=14%  Similarity=0.159  Sum_probs=45.7

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhc
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK  378 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~K  378 (472)
                      ..+|.|...|+||+|.+|+.+|++-|+||.+--+..-.+ .+-.+-.|.+.+     +...+.|.+.|.+
T Consensus       783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ge-rv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~  851 (854)
T PRK01759        783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLLS  851 (854)
T ss_pred             eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCc-eEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence            578999999999999999999999999999977765544 344444444321     2233666665543

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=85.55  E-value=1.9  Score=44.21  Aligned_cols=180  Identities=16%  Similarity=0.160  Sum_probs=104.5

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEe--CChhhHHHHHHHHhcCceeeEEE--
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVS--GTERVLRQVVEQLNKLVNVIKVE--  149 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~--gdd~~ieQI~kQL~KLvdVikV~--  149 (472)
                      ++..+|.+-..|+||..++|++...++|.||.....- +.. .++  |.+...  +.....+++...+..+.+=....  
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~   83 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR   83 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence            3678999999999999999999999999999987765 322 344  555554  33345666766666554411111  


Q ss_pred             ------------ecCCchhhhhheee--------EEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHH
Q 012043          150 ------------DISNEPHVERELML--------IKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV  209 (472)
Q Consensus       150 ------------dlt~~~~V~RELaL--------IKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdaf  209 (472)
                                  -.+.+.+--.+|+.        +.|.+=-.+-.+...+++.|+--.-.+.-+.-+     .++.=+..
T Consensus        84 ~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~~  158 (287)
T COG0788          84 LHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEARL  158 (287)
T ss_pred             EeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHHH
Confidence                        11122222222210        111111145667888888888765555432211     46677788


Q ss_pred             HHHhccCCcEEEeeccceeeecCcCCCCcccc-ccc-------ccCCchhhhhcccccccccccccc
Q 012043          210 QRNLSKFGIKELARTGKIALRREKLGDTAPFW-NFS-------AASYPDLEEKKRTGIFIPETNQSL  268 (472)
Q Consensus       210 i~~L~~fGIlEvaRTG~iAl~Rg~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  268 (472)
                      +++++.||+      -.+-|+|=...++..+- ++.       -.--|.+..+.|-.-...++++-.
T Consensus       159 ~~ll~~~~~------DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlI  219 (287)
T COG0788         159 LELLEEYGA------DLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLI  219 (287)
T ss_pred             HHHHHHhCC------CEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeEe
Confidence            999999992      23457777666665441 111       112456655554444455555533

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=85.48  E-value=3  Score=32.72  Aligned_cols=50  Identities=26%  Similarity=0.353  Sum_probs=40.0

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      +.||++.|+...|++.|+||.-++-|.++.    +++++++.  +..+++++.|++
T Consensus        12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~--~~~~~av~~Lh~   61 (65)
T cd04918          12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVND--SEAEGCVQALHK   61 (65)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeH--HHHHHHHHHHHH
Confidence            468999999999999999999999888753    58888885  455666666654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins

Probab=85.46  E-value=3  Score=33.60  Aligned_cols=56  Identities=23%  Similarity=0.328  Sum_probs=42.6

Q ss_pred             eEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 012043          163 LIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI  218 (472)
Q Consensus       163 LIKV~~~--~~~r~eI~~l~~~FrAkI------VDv----s~~sl~iE~TG~~~KIdafi~~L~~fGI  218 (472)
                      ++|+...  ....+-|-++++.|+..+      ||-    .-.++++|+.|++++++++++.|+..|+
T Consensus         4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v   71 (76)
T PF09383_consen    4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV   71 (76)
T ss_dssp             EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence            5566543  456778999999998655      333    4467999999999999999999999995

This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=85.46  E-value=2.6  Score=33.46  Aligned_cols=46  Identities=28%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHh
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~  140 (472)
                      |.||+++|++..++..|+||--++   |+.  -+.+.|+.  +.+++.++-|+
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~--~~~~~A~~~L~   64 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKE--EDLEKAVEALH   64 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEG--GGHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeH--HHHHHHHHHhc
Confidence            599999999999999999998887   332  35666763  34556555554

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=85.29  E-value=3.4  Score=29.52  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=35.0

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHH
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ  138 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQ  138 (472)
                      +.||.+.|+...+++.|+||+.++.+..  ...++++++.+  ..+++.+-
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~~   58 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVKA   58 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHHH
Confidence            4799999999999999999999987764  23477777642  34444443

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PRK09084 aspartate kinase III; Validated

Probab=84.74  E-value=18  Score=39.06  Aligned_cols=113  Identities=15%  Similarity=0.292  Sum_probs=75.7

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-------hHHHHHHHHhcCceeeEEEecCCchhhhhh
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~-------~ieQI~kQL~KLvdVikV~dlt~~~~V~RE  160 (472)
                      ++||+++||...|++.|+||+-++.++    .-++++++.++.       ..+.+.+.|+++-.   +       .+.+.
T Consensus       318 ~~~g~~a~if~~l~~~~I~Vd~I~sse----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~  383 (448)
T PRK09084        318 HARGFLAEVFGILARHKISVDLITTSE----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG  383 (448)
T ss_pred             ccccHHHHHHHHHHHcCCeEEEEeccC----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence            689999999999999999999998432    347888875542       23455556654211   1       25678


Q ss_pred             eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043          161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (472)
Q Consensus       161 LaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (472)
                      +++|.|--..     .--+.++......+-.++..+.....|-+.=+.+..+..++.|.
T Consensus       384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH  442 (448)
T PRK09084        384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH  442 (448)
T ss_pred             eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence            9999996543     22335555555556777777677666666666666666666654

>PRK09224 threonine dehydratase; Reviewed

Probab=84.61  E-value=28  Score=38.17  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=55.7

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEE--EeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIV--V~gdd~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      ++..+++..-++||-|.+++.+++  +-||..+.--.... ...+.+.  +.+.++.+++|++.|++.=  .++.++++.
T Consensus       327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~n  402 (504)
T PRK09224        327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSDD  402 (504)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCCC
Confidence            578999999999999999999999  68998887655322 2334444  4444555899999997744  577788776


Q ss_pred             hh
Q 012043          155 PH  156 (472)
Q Consensus       155 ~~  156 (472)
                      +.
T Consensus       403 e~  404 (504)
T PRK09224        403 EL  404 (504)
T ss_pred             HH
Confidence            53

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=84.25  E-value=6.4  Score=29.22  Aligned_cols=50  Identities=18%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      ..+.||++.|+...+++.|.|++.++..    ...++++++.+  ..+++.+-|++
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~~--~~~~~~~~l~~   59 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDED--DAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeHH--HHHHHHHHHHH
Confidence            4577999999999999999999999842    24477888642  33444444443

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=84.18  E-value=8.6  Score=41.47  Aligned_cols=120  Identities=15%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEEe
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN  167 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV~  167 (472)
                      +.||+++|+...|++.|+||+-++.+.++  .-++++++.++  .++..+.|++...=.    ....=.+.+++++|.|-
T Consensus       333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~d--~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isvv  404 (465)
T PRK06291        333 GVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEAD--LEKALKALRREFGEG----LVRDVTFDKDVCVVAVV  404 (465)
T ss_pred             CCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHh----cCcceEEeCCEEEEEEE
Confidence            78999999999999999999999866433  23777776432  344444444422100    01112356788999886


Q ss_pred             CCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 012043          168 GDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (472)
Q Consensus       168 ~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~  215 (472)
                      -..     .--..++......+.+|.-++  ....-|-+.=+.+..+..++.|..
T Consensus       405 G~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~  459 (465)
T PRK06291        405 GAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD  459 (465)
T ss_pred             cCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence            543     234467777777788886555  444555555566667777776653

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=84.00  E-value=2.5  Score=44.13  Aligned_cols=106  Identities=13%  Similarity=0.185  Sum_probs=70.8

Q ss_pred             EEEEEE---EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCc
Q 012043          315 HTLSML---VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (472)
Q Consensus       315 htLSil---VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~  391 (472)
                      ..+++.   +.|+||++.|+...|.+.|+||+.++.+.++    ..++++++.  +..+++.+.|++...-....    .
T Consensus       261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~  330 (401)
T TIGR00656       261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVDE--TDADEAVRALKDQSGAAGLD----R  330 (401)
T ss_pred             EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----e
Confidence            356666   7899999999999999999999999887654    347788863  34666666666643211111    1


Q ss_pred             hHHHHhhheeEEecCcc-c----HHHHHHHHHHhCcEEEEecCC
Q 012043          392 PFAERELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDH  430 (472)
Q Consensus       392 ~~V~REL~LiKV~~~~~-~----r~eI~~ia~iFrakIVDvs~~  430 (472)
                      -.+.+.+++|-|-...- +    -..+++.....+.+|.-++..
T Consensus       331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s  374 (401)
T TIGR00656       331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS  374 (401)
T ss_pred             EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC
Confidence            12556778777754331 1    246777777777777766643

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=83.75  E-value=3.8  Score=32.14  Aligned_cols=50  Identities=22%  Similarity=0.328  Sum_probs=37.5

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      +.||++.|+...|++.|+||.-++.|.++.  .++++++.+  ..++.++.|++
T Consensus        12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~~--~~~~av~~Lh~   61 (65)
T cd04918          12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVNDS--EAEGCVQALHK   61 (65)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeHH--HHHHHHHHHHH
Confidence            468999999999999999999999877632  488888753  34444454443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=83.28  E-value=3.7  Score=32.72  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g  127 (472)
                      ..|.||++++|.+.++++|.||+-++.. .+   -+++++..
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~   46 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG   46 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence            3578999999999999999999999554 22   36677764

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>PRK00907 hypothetical protein; Provisional

Probab=83.14  E-value=9.2  Score=33.22  Aligned_cols=72  Identities=10%  Similarity=0.070  Sum_probs=63.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCc--eeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGY--NIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE  384 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgy--NIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~  384 (472)
                      ..+.|.|.-.+++++...|..++.+.+-  +-.++++-++....+-.+|+.+. .+.++++.|=+.|.+.-.|.-
T Consensus        16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkm   90 (92)
T PRK00907         16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKW   90 (92)
T ss_pred             CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence            4589999999999999999999998865  56788889999999999999988 567889999999999888853

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=83.13  E-value=4.5  Score=32.15  Aligned_cols=41  Identities=22%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd  365 (472)
                      ..+.||++.++...|++.|.|++.++.+..+    .+++++++.+
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~~   51 (80)
T cd04921          11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDES   51 (80)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeHH
Confidence            4578999999999999999999999887443    2677888743

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=82.96  E-value=3.7  Score=29.36  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=36.4

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (472)
Q Consensus       323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL  376 (472)
                      +.||.+.++...+++.|+||+.++.+..   + .+++++++.  +..+++.+-|
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~--~~~~~~~~~l   59 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDE--SDLEKAVKAL   59 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeH--HHHHHHHHHh
Confidence            4799999999999999999999988764   2 457777774  3455554443

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PRK06635 aspartate kinase; Reviewed

Probab=82.86  E-value=3.9  Score=42.71  Aligned_cols=98  Identities=17%  Similarity=0.297  Sum_probs=66.5

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEEecCCchHHHHh
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITHLPFAERE  397 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL---idVi~V~dlt~~~~V~RE  397 (472)
                      ..|+||+|.|+...|.+.|+||+.++.+.++ ++...++++++.  +..++..+.|+++   +.+..+       .+.+.
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~-~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~  339 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSE-DGKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDD  339 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCC-CCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCC
Confidence            6789999999999999999999998777543 235567788864  3455666666664   222222       23456


Q ss_pred             hheeEEecC-----cccHHHHHHHHHHhCcEEEEec
Q 012043          398 LILIKIAVN-----TAARRDVLDIAKIFRARAVDVS  428 (472)
Q Consensus       398 L~LiKV~~~-----~~~r~eI~~ia~iFrakIVDvs  428 (472)
                      ++++.|...     +..-.++++....++..|.-++
T Consensus       340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            777877432     1223577777777888887664

>PRK14434 acylphosphatase; Provisional

Probab=82.03  E-value=3.4  Score=35.49  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 012043          171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK  215 (472)
Q Consensus       171 ~~r~eI~~l~~~Fr---AkIVDvs~~sl~iE~TG~~-~KIdafi~~L~~  215 (472)
                      .-|.-+.++|+.++   +.|-...+.++.|++.|++ ++++.|++.|+.
T Consensus        16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~   64 (92)
T PRK14434         16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK   64 (92)
T ss_pred             eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence            35889999999999   9999999999999999997 699999999975

>PRK12483 threonine dehydratase; Reviewed

Probab=81.74  E-value=8.8  Score=42.45  Aligned_cols=103  Identities=15%  Similarity=0.196  Sum_probs=76.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHH-HHHHHHHhcccceEEEEecCC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESI-GKLVQLLHKLIDLHEVQDITH  390 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~i-eQIvkQL~KLidVi~V~dlt~  390 (472)
                      +++.+++...++||-|.+++.+++.+  ||..+.--.. ..+-..+.+.++. +.+.. ++|++.|++.=  .++.++++
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd  418 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYA-DAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD  418 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEec-CCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence            56899999999999999999999988  9998877653 3344778887773 33455 99999997743  57788888


Q ss_pred             chHH---------------HHhhheeEEecCcccHHHHHHHHHHhCc
Q 012043          391 LPFA---------------ERELILIKIAVNTAARRDVLDIAKIFRA  422 (472)
Q Consensus       391 ~~~V---------------~REL~LiKV~~~~~~r~eI~~ia~iFra  422 (472)
                      .+..               .|| +|+.|..+ +.....++.++.++-
T Consensus       419 ne~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~  463 (521)
T PRK12483        419 DELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGP  463 (521)
T ss_pred             CHHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCC
Confidence            7664               344 46667664 566677777777654

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=81.74  E-value=8.8  Score=42.08  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL  391 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~  391 (472)
                      +.+.+++..-++||-|.++..+++.+  ||..++--. ...+..++.+.+. .+.+.+++|+++|++.  =.++.|+++.
T Consensus       324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~-~~~~~a~v~vgie~~~~~~~~~l~~~L~~~--Gy~~~dls~n  398 (499)
T TIGR01124       324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY-ADRKDAHIFVGVQLSNPQERQEILARLNDG--GYSVVDLTDD  398 (499)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe-cCCCeEEEEEEEEeCCHHHHHHHHHHHHHc--CCCeEECCCC
Confidence            47899999999999999999999984  999888765 3456678888887 3568899999999874  3677888876


Q ss_pred             hHH
Q 012043          392 PFA  394 (472)
Q Consensus       392 ~~V  394 (472)
                      +..
T Consensus       399 e~~  401 (499)
T TIGR01124       399 ELA  401 (499)
T ss_pred             HHH
Confidence            544

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PLN02551 aspartokinase

Probab=81.72  E-value=21  Score=39.52  Aligned_cols=114  Identities=17%  Similarity=0.279  Sum_probs=73.2

Q ss_pred             CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--------hHHHHHHHHhcCceeeEEEecCCchhhhh
Q 012043           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVER  159 (472)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~--------~ieQI~kQL~KLvdVikV~dlt~~~~V~R  159 (472)
                      ++||+++||.+.|.+.|+||+-++.+  +  .-++++++.++.        .++++...|+++   ..|       .+.+
T Consensus       378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~~  443 (521)
T PLN02551        378 GQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLLQ  443 (521)
T ss_pred             CcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEeC
Confidence            68999999999999999999999643  2  347888876542        233333444432   122       2567


Q ss_pred             heeeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 012043          160 ELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (472)
Q Consensus       160 ELaLIKV~~~~~~----r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~  215 (472)
                      ++++|-|--.-..    -..++......+.+|.-++  ...+-|-+.=+.+..+..++.|..
T Consensus       444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~  505 (521)
T PLN02551        444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS  505 (521)
T ss_pred             CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence            8888888644212    2356666677777885444  455555555566666666666654

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=81.63  E-value=5.3  Score=31.03  Aligned_cols=49  Identities=20%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (472)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K  141 (472)
                      .+.||++.|+...+++.|+|+...+-    .+-.+.++++.+  ..+++++.|++
T Consensus        12 ~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~~--~~~~av~~Lh~   60 (64)
T cd04937          12 RGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSED--DVKEAVNALHE   60 (64)
T ss_pred             cCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcHH--HHHHHHHHHHH
Confidence            47899999999999999999974442    223488888743  34455555544

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=81.49  E-value=4.9  Score=31.83  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=39.4

Q ss_pred             chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       324 ~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      +||++.|+...+++.|+|+..++-|+++    -+++++++.  +..++.++.|++
T Consensus        14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~----~~is~~V~~--~~~~~av~~Lh~   62 (66)
T cd04915          14 TPGVLARGLAALAEAGIEPIAAHQSMRN----VDVQFVVDR--DDYDNAIKALHA   62 (66)
T ss_pred             cchHHHHHHHHHHHCCCCEEEEEecCCe----eEEEEEEEH--HHHHHHHHHHHH
Confidence            7999999999999999999999888764    357788873  566666666654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=80.62  E-value=25  Score=40.95  Aligned_cols=116  Identities=13%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHHhcCceeeEEEecCCchhhhhh
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL~KLvdVikV~dlt~~~~V~RE  160 (472)
                      +.++||+++||.+.|++.|+||+-++.+    +.-++++++..+     +.++.+.++|.++-.|   .       +.+.
T Consensus       332 ~~~~~g~~a~if~~la~~~I~Vd~I~ss----e~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i---~-------~~~~  397 (861)
T PRK08961        332 MWQQVGFLADVFTLFKKHGLSVDLISSS----ETNVTVSLDPSENLVNTDVLAALSADLSQICRV---K-------IIVP  397 (861)
T ss_pred             ccccccHHHHHHHHHHHcCCeEEEEEcC----CCEEEEEEccccccchHHHHHHHHHHHhhcCcE---E-------EeCC
Confidence            3478999999999999999999988632    234777777543     4566777777653222   1       3456


Q ss_pred             eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043          161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (472)
Q Consensus       161 LaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~  215 (472)
                      +++|-|--..     ..-..++......+..++..+...+-|-+.=+.+..+..++.|..
T Consensus       398 va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~  457 (861)
T PRK08961        398 CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLHA  457 (861)
T ss_pred             eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHHH
Confidence            7888885432     233466666666778888888776666665566666666666553

>PRK04998 hypothetical protein; Provisional

Probab=80.43  E-value=14  Score=31.41  Aligned_cols=72  Identities=18%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE  384 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~  384 (472)
                      ..+.+.+...+.++.++.|..+|.+..-.-+.++.-++....+-.+|+.+. .++++++.|-+.|.+.-.|.-
T Consensus        14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~m   86 (88)
T PRK04998         14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVRM   86 (88)
T ss_pred             CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEEE
Confidence            458999999999999999999997764333457788888999999999988 578899999999999888853

>PLN02550 threonine dehydratase

Probab=80.21  E-value=9.8  Score=42.88  Aligned_cols=104  Identities=12%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL  391 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~  391 (472)
                      +++.+.+.+-++||-|.+++.++..+  ||-.+.--. ...+-..+.+.++ -+.+.+++|+..|++.=  .++.|+++.
T Consensus       416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            46889999999999999999999987  999888777 4456677777777 46788999999998854  588899987


Q ss_pred             hHHHH-------hh------heeEEecCcccHHHHHHHHHHhCc
Q 012043          392 PFAER-------EL------ILIKIAVNTAARRDVLDIAKIFRA  422 (472)
Q Consensus       392 ~~V~R-------EL------~LiKV~~~~~~r~eI~~ia~iFra  422 (472)
                      +...-       |-      +|+.|..+ +....+++.++.++-
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~  533 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSP  533 (591)
T ss_pred             hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCC
Confidence            76522       21      24555443 444566666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	472
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		1e-25
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		2e-17
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		3e-24
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		2e-15
2fgc_A	193	Crystal Structure Of Acetolactate Synthase- Small S		8e-21
2fgc_A	193	Crystal Structure Of Acetolactate Synthase- Small S		7e-17

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+   +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQIT 63
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VEREL L+K+        E   L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNELYT 123
Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 12/158 (7%)
Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG 370
           G   H +S+L  N  G L+ V G+ S RGYNI+SL+V P E   LS  T V  G DE + 
Sbjct: 1   GHXRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVE 60
Query: 371 KLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDH 430
           ++ + L+KLI++ ++ D++   + EREL L+K+      R +   +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNE 120
Query: 431 TITLE------------RLLEPYGICEVARTGRVALVR 456
             T+E            + ++   I E+ARTG   L R
Sbjct: 121 LYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 7/158 (4%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 3   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 62
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++    T
Sbjct: 63  KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 122
Query: 197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
           +++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct: 123 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + ++ + L
Sbjct: 6   LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 377 HKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTIT--- 433
           HKL+D+  V ++      ERE++L+KI  +   R +V    +IFR + +DV+    T   
Sbjct: 66  HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQL 125
Query: 434 ----------LERLLEPYGICEVARTGRVALVR 456
                     L  + +   I EVAR+G V L R
Sbjct: 126 AGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit From Thermotoga Maritima Length = 193

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 76  KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLR 133
           +++ H +S  V ++ G+  ++A +FARRG+NI S+ VG +    L    I V G ++ + 
Sbjct: 26  QIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIE 85
Query: 134 QVVEQLNKLVNVIKVEDISNEPH--VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS 191
           Q+ +Q  KLV V+KV  I   P   VERE  LIK+  D     EI  LV+IFR K++D+S
Sbjct: 86  QIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDEDKQ-EIFQLVEIFRGKIIDVS 144
Query: 192 EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
                IE+TG   K+ A    L +  ++E+ARTG +A  R
Sbjct: 145 REGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184

>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit From Thermotoga Maritima Length = 193

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 15/159 (9%)
Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +R H +S LV+N PGV   V  + +RRG+NI S+ VG +E  GLS +   V G D++I +
Sbjct: 27  IREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIEQ 86
Query: 372 LVQLLHKLIDLHEVQDITHLP--FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSD 429
           + +  +KL+++ +V  I  LP    ERE  LIK+  +   ++++  + +IFR + +DVS 
Sbjct: 87  IEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFD-EDKQEIFQLVEIFRGKIIDVSR 145
Query: 430 HTITLE------------RLLEPYGICEVARTGRVALVR 456
               +E             LL    + E+ARTG VA  R
Sbjct: 146 EGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	472
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	1e-75
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	4e-61
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	7e-75
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	6e-60
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	3e-74
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	2e-57
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-04
2f06_A	144	Conserved hypothetical protein; structural genomic	3e-04

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  233 bits (597), Expect = 1e-75
 Identities = 64/155 (41%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 63

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VERELML+K+        E+  L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYT 123

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  196 bits (500), Expect = 4e-61
 Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 12/160 (7%)

Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG 370
           G   H +S+L+ N  G L+ V G+ S RGYNI+SL+V P E   LS +T V  G DE + 
Sbjct: 1   GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVE 60

Query: 371 KLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDH 430
           ++ + L+KLI++ ++ D++   + EREL+L+K+      R ++  +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNE 120

Query: 431 TITLE------------RLLEPYGICEVARTGRVALVRES 458
             T+E            + ++   I E+ARTG   L R  
Sbjct: 121 LYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE 160

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  232 bits (594), Expect = 7e-75
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 5/174 (2%)

Query: 71  PITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT 128
                +++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80

Query: 129 ERVLRQVVEQLNKLVNVIKVEDISNEP--HVERELMLIKLNGDTSTWPEIMWLVDIFRAK 186
           ++ + Q+ +Q  KLV V+KV  I   P   VERE+ LIK+  D     EI  LV+IFR K
Sbjct: 81  DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFD-EDKQEIFQLVEIFRGK 139

Query: 187 VVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPF 240
           ++D+S     IE+TG   K+ A    L +  ++E+ARTG +A+ R  + +   F
Sbjct: 140 IIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNVKEGEGF 193

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  194 bits (494), Expect = 6e-60
 Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 15/171 (8%)

Query: 306 DEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365
                 +R H +SMLV+N PGV+  V  + +RRG+NI S+ VG +E  GLS +  +V G 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80

Query: 366 DESIGKLVQLLHKLIDLHEVQDITHLP--FAERELILIKIAVNTAARRDVLDIAKIFRAR 423
           D++I ++ +  +KL+++ +V  I  LP    ERE+ LIK+  +   ++++  + +IFR +
Sbjct: 81  DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFD-EDKQEIFQLVEIFRGK 139

Query: 424 AVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESGVDS 462
            +DVS     +E             LL    + E+ARTG VA+ R +  + 
Sbjct: 140 IIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNVKEG 190

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  229 bits (587), Expect = 3e-74
 Identities = 59/158 (37%), Positives = 97/158 (61%), Gaps = 3/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           + R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 195 LTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRR 231
            T+++ G  GK+ A   ++     I E+AR+G + L R
Sbjct: 121 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  186 bits (474), Expect = 2e-57
 Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 13/158 (8%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +    LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + +
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 372 LVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHT 431
           + + LHKL+D+  V ++      ERE++L+KI  +   R +V    +IFR + +DV+   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 432 ITLE------------RLLEPYG-ICEVARTGRVALVR 456
            T++              +     I EVAR+G V L R
Sbjct: 121 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 57/369 (15%), Positives = 107/369 (28%), Gaps = 95/369 (25%)

Query: 133 RQVVEQLNKLVNVIKVEDISNEPHVE---RELMLIKLNGDTSTWPEIM---------WLV 180
           + V +    +++  +++ I            L    L+       + +         +L+
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 181 DIFRAKVVDISEHALTIEVTGDP---GKMVAVQRNLS--------KFGIKELAR------ 223
              + +    S          D       V  + N+S        +  + EL        
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 224 -----TGK-----IALRREKLGDTAP---FW-NFSAASYPDLEEKKRTGIFIPETNQSLN 269
                +GK           K+        FW N    + P+          + E  Q L 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---------VLEMLQKLL 206

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLV--N-NTPG 326
              + + +SR          D S+N  L  H            + +   +LV  N     
Sbjct: 207 YQIDPNWTSRS---------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 327 VLNIVTG-----VISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG----KLVQLLH 377
             N         + +R       L+            TT +     S+     ++  LL 
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAA---------TTTHISLDHHSMTLTPDEVKSLLL 308

Query: 378 KLIDLHEVQDITHLPFAERELILI---KIAVNTAARRDVLDIAKIFRARAVDVSDHTI-- 432
           K +D    QD   LP   RE++     ++++   + RD L     ++    D     I  
Sbjct: 309 KYLDC-RPQD---LP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 433 TLERLLEPY 441
           +L  +LEP 
Sbjct: 362 SLN-VLEPA 369

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 68/424 (16%), Positives = 118/424 (27%), Gaps = 127/424 (29%)

Query: 127 GTERVLRQVVEQLNKLVNVIKVEDISNEPHVE-------------RELM--------LIK 165
                   V+E L KL+  I     S   H               R L+        L+ 
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 166 LNGDTSTWPEIMWLVDIF----------RAK-VVDISEHALTIEVTGDPGKMVAVQRN-- 212
           L  +           + F          R K V D    A T  ++ D   M        
Sbjct: 250 LL-NVQNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 213 --LSKF-GIK-----ELARTG---KIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFI 261
             L K+   +         T    ++++  E + D    W+     +  +   K T I  
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLTTII- 359

Query: 262 PETNQSLNGNANVDTSSRGDVYPVEP---YDDFS-----AN---QVLDAHWGILYDEDPS 310
                SLN            + P E    +D  S     A+    +L   W  +   D  
Sbjct: 360 ---ESSLN-----------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 311 GL--RSHTLSMLV-NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG------LSC--IT 359
            +  + H  S++        ++I          +I        E E       +    I 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISI---------PSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 360 TVVPGTDESIGKLVQ-----LLHKLIDLHEVQDITHLP-------FAERELILIKIAVN- 406
                 D     L Q     + H L ++   + +T          F E+++     A N 
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 407 TAARRDVLDIAKIFRARAVDVSDHTITLERLLEPYG-----------ICEVARTGRVALV 455
           + +  + L   K ++     + D+    ERL+                 +     R+AL+
Sbjct: 517 SGSILNTLQQLKFYKPY---ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

Query: 456 RESG 459
            E  
Sbjct: 574 AEDE 577

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQ 138
            I +   D++G+ N+I GV ++   NI ++ +            I V  T++ L  ++++
Sbjct: 7   GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDK-LTTLMDK 65

Query: 139 LNKLVNVIKVEDISNEPH 156
           L K+  V  VE +SN  H
Sbjct: 66  LRKVQGVFTVERLSNLEH 83

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Length = 144

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ--L 139
           +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +    
Sbjct: 9   LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFA 68

Query: 140 NKLVNVIKVEDISNEPHVERELM 162
             + +V+ +    N P    +++
Sbjct: 69  VNITDVVGIS-CPNVPGALAKVL 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	472
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.2
2f06_A	144	Conserved hypothetical protein; structural genomic	99.01
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.89
2f06_A	144	Conserved hypothetical protein; structural genomic	98.88
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.75
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.61
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.57
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.52
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.24
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.99
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.75
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.22
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.13
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.13
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.11
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.1
2nyi_A	195	Unknown protein; protein structure initiative, PSI	97.01
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.97
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	96.92
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.81
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.61
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.54
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.53
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.46
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.41
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.41
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.39
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.39
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.3
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.21
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.17
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.11
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.1
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	95.96
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	95.83
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.78
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	95.32
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	94.96
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.69
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	94.68
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.63
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	94.37
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	94.15
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	94.05
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	93.99
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	93.98
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	93.7
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.45
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	93.42
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	93.22
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	92.76
3luy_A	329	Probable chorismate mutase; structural genomics, A	92.75
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	92.48
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	91.61
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	91.6
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	91.28
3luy_A	329	Probable chorismate mutase; structural genomics, A	90.88
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	90.87
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	89.25
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	89.2
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	87.8
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	86.2
2h9z_A	86	Hypothetical protein HP0495; feredoxin-like (beta-	85.17
2qrr_A	101	Methionine import ATP-binding protein METN; alpha-	84.23
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	82.98
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	82.55
2qsw_A	100	Methionine import ATP-binding protein METN 2; ABC	82.3
3ced_A	98	Methionine import ATP-binding protein METN 2; ABC	81.7
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	81.65

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.3e-51  Score=388.67  Aligned_cols=158  Identities=39%  Similarity=0.634  Sum_probs=153.3

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCC-
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN-  153 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~-  153 (472)
                      +|+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+|+|+++.++||.+||+||+||++|.++++ 
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~  106 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL  106 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence            47999999999999999999999999999999999999999975  999999999999999999999999999999999 


Q ss_pred             -chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 012043          154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (472)
Q Consensus       154 -~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg  232 (472)
                       .++|+||||||||+++++ |.+|++++++|||+|||+++++++||+||+++|||+|+++|+||||+|++|||.+||.||
T Consensus       107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg  185 (193)
T 2fgc_A          107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW  185 (193)
T ss_dssp             GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence             999999999999999988 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 012043          233 KLG  235 (472)
Q Consensus       233 ~~~  235 (472)
                      +..
T Consensus       186 ~~~  188 (193)
T 2fgc_A          186 NVK  188 (193)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            854

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=5.7e-51  Score=376.05  Aligned_cols=158  Identities=41%  Similarity=0.633  Sum_probs=153.9

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      .|+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+++++++.++||.+||+||+||++|.++++.
T Consensus         2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~   81 (165)
T 2pc6_A            2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE   81 (165)
T ss_dssp             CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            36899999999999999999999999999999999999998874  9999999999999999999999999999999999


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 012043          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (472)
Q Consensus       155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~  234 (472)
                      ++|+||||||||++++++|.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||.+||.||++
T Consensus        82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~  161 (165)
T 2pc6_A           82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER  161 (165)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred             ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=3e-50  Score=370.67  Aligned_cols=158  Identities=37%  Similarity=0.653  Sum_probs=153.5

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+++++++.++||.+||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            67999999999999999999999999999999999999998864  9999999999999999999999999999999999


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 012043          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK  233 (472)
Q Consensus       155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG-IlEvaRTG~iAl~Rg~  233 (472)
                      ++|+||||||||++++++|.||++++++|||+|||++++++++|+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~  160 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD  160 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999997


Q ss_pred             C
Q 012043          234 L  234 (472)
Q Consensus       234 ~  234 (472)
                      +
T Consensus       161 ~  161 (164)
T 2f1f_A          161 K  161 (164)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.1e-49  Score=375.72  Aligned_cols=159  Identities=35%  Similarity=0.555  Sum_probs=144.3

Q ss_pred             ccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043          297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (472)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL  376 (472)
                      .|+|||-+.+.    .|+|+|+++|+|+||+|+||+++|+||||||+||++++++++++|||||+|+++++.++||.|||
T Consensus        16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL   91 (193)
T 2fgc_A           16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQA   91 (193)
T ss_dssp             ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHH
T ss_pred             chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence            58999988554    57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccceEEEEecCC--chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCC
Q 012043          377 HKLIDLHEVQDITH--LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG  442 (472)
Q Consensus       377 ~KLidVi~V~dlt~--~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyG  442 (472)
                      +||+||++|.++++  .++|+||||||||+++++ |.+|++++++|||+|||+++++++||            ++|+|||
T Consensus        92 ~KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~g  170 (193)
T 2fgc_A           92 YKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQ  170 (193)
T ss_dssp             TTSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGG
T ss_pred             cCcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhC
Confidence            99999999999999  999999999999999988 99999999999999999999999999            9999999


Q ss_pred             cEEEeecceeeeecCCCc
Q 012043          443 ICEVARTGRVALVRESGV  460 (472)
Q Consensus       443 I~EvaRTG~vAl~Rg~~~  460 (472)
                      |+|++|||++||.||++.
T Consensus       171 i~E~~RtG~val~Rg~~~  188 (193)
T 2fgc_A          171 VEEIARTGIVAMNRWNVK  188 (193)
T ss_dssp             EEEEEECCCEEEECCCC-
T ss_pred             CEEEEccChhheecCCcc
Confidence            999999999999999864

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=2.5e-47  Score=351.72  Aligned_cols=149  Identities=37%  Similarity=0.590  Sum_probs=145.2

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCC
Q 012043          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH  390 (472)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~  390 (472)
                      |-|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++++++.++||.+||+||+||++|.++++
T Consensus         1 ~~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~   80 (165)
T 2pc6_A            1 GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSS   80 (165)
T ss_dssp             -CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGG
T ss_pred             CceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCC
Q 012043          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRES  458 (472)
Q Consensus       391 ~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~  458 (472)
                      .++|+||||||||++++.+|.+|++++++|||+|||++++++++|            ++|+||||+|++|||.+||.||+
T Consensus        81 ~~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~  160 (165)
T 2pc6_A           81 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE  160 (165)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCc
Confidence            999999999999999999999999999999999999999999999            99999999999999999999998


Q ss_pred             C
Q 012043          459 G  459 (472)
Q Consensus       459 ~  459 (472)
                      +
T Consensus       161 ~  161 (165)
T 2pc6_A          161 R  161 (165)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=2.5e-46  Score=344.56  Aligned_cols=148  Identities=34%  Similarity=0.557  Sum_probs=144.8

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCc
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~  391 (472)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++|||++++++++.++||.+||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCC-cEEEeecceeeeecCC
Q 012043          392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG-ICEVARTGRVALVRES  458 (472)
Q Consensus       392 ~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyG-I~EvaRTG~vAl~Rg~  458 (472)
                      ++|+||||||||++++++|.+|++++++|||+|||++++++++|            ++|+||| |+|++|||.+||.||+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~  160 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD  160 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence            99999999999999999999999999999999999999999999            9999999 9999999999999998


Q ss_pred             C
Q 012043          459 G  459 (472)
Q Consensus       459 ~  459 (472)
                      +
T Consensus       161 ~  161 (164)
T 2f1f_A          161 K  161 (164)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.20  E-value=8.8e-10  Score=100.97  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=53.0

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcC
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KL  142 (472)
                      +++|+|+..|+||++++|+++++++|+||.++....+.+.-.+++++.+++...++|.++|.++
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~   69 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLL   69 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHH
Confidence            6899999999999999999999999999999998875443347787877666778888887443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=99.01  E-value=8.3e-09  Score=90.23  Aligned_cols=125  Identities=14%  Similarity=0.218  Sum_probs=88.8

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~  155 (472)
                      .||.|.|+++++|+||+|+||+++|+++|+||++++++.+.+++.+++++ .|.+...++.++..-.+...         
T Consensus         3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~-~d~~~a~~~L~~~G~~v~~~---------   72 (144)
T 2f06_A            3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV-SDPDKAYKALKDNHFAVNIT---------   72 (144)
T ss_dssp             SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE-SCHHHHHHHHHHTTCCEEEE---------
T ss_pred             ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe-CCHHHHHHHHHHcCCeEeee---------
Confidence            57899999999999999999999999999999999999888877655654 45555666655542221111         


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 012043          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI  218 (472)
Q Consensus       156 ~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVD---v-s~~--sl~iE~TG~~~KIdafi~~L~~fGI  218 (472)
                          .+.-+.+.-.|..-+++.++....+..|..   . ++.  +++++.    +..+..++.|+.-|.
T Consensus        73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~  133 (144)
T 2f06_A           73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV  133 (144)
T ss_dssp             ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred             ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence                344556666677777888888888888843   2 333  344555    356666777776664

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.89  E-value=1.5e-08  Score=80.38  Aligned_cols=77  Identities=18%  Similarity=0.338  Sum_probs=67.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCch
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHLP  392 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~~  392 (472)
                      .+.|.+.+.|+||+|++|+++|++.|+||.++.+....+  ...+++.+. .+...++++.++|+++-+|.+|..+...+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~   82 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE   82 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            578999999999999999999999999999999987543  778888776 46678999999999999999998876543

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.88  E-value=2.4e-08  Score=87.35  Aligned_cols=100  Identities=18%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      ..||.|.|++.++|+||+|++|+++|+++|+||++|+++++.++++.|++  + .|.+...++.++..-.+...      
T Consensus         2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~v~~~------   72 (144)
T 2f06_A            2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFAVNIT------   72 (144)
T ss_dssp             CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCCEEEE------
T ss_pred             CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCeEeee------
Confidence            35889999999999999999999999999999999999988887888887  2 46666666666543222111      


Q ss_pred             CchHHHHhhheeEEecCcccHHHHHHHHHHhCcEEE
Q 012043          390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAV  425 (472)
Q Consensus       390 ~~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIV  425 (472)
                             .+.-+.++-.+..-.++.++....+..|.
T Consensus        73 -------svv~v~~~d~pGvla~i~~~L~~~~InI~  101 (144)
T 2f06_A           73 -------DVVGISCPNVPGALAKVLGFLSAEGVFIE  101 (144)
T ss_dssp             -------EEEEEEEESSTTHHHHHHHHHHHTTCCEE
T ss_pred             -------eEEEEEeCCCCcHHHHHHHHHHHCCCCEE
Confidence                   22333455444455677777766777774

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.75  E-value=5.8e-08  Score=77.00  Aligned_cols=78  Identities=22%  Similarity=0.319  Sum_probs=64.8

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt~~~  155 (472)
                      ..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.++ .+...+++++++|+++-+|.+|..+..-+
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~   82 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE   82 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            3568999999999999999999999999999999987654223566655 35678999999999999999998776543

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.61  E-value=9.8e-08  Score=76.80  Aligned_cols=68  Identities=15%  Similarity=0.232  Sum_probs=58.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcccce
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLIDL  382 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-e~~ieQIvkQL~KLidV  382 (472)
                      ++++|++...|+||+|++|+++++.+|+||.+++.....  +...|++.+... ...+++|.++|+++-+-
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~   72 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT   72 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998775  778888887643 36799999999987654

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.57  E-value=3.5e-07  Score=83.65  Aligned_cols=115  Identities=12%  Similarity=0.182  Sum_probs=84.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc----eEEEEecC
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID----LHEVQDIT  389 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLid----Vi~V~dlt  389 (472)
                      +++|++...|+||++++|+++++++|+||.++....+  .+...|++++.+++...++|.++|.++.+    ...+...+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~   83 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS   83 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5899999999999999999999999999999888774  46777888888776788999999987654    45566555


Q ss_pred             CchHHHHhhheeEEecCcccH----HHHHHHHHHhCcEEEEecCCh
Q 012043          390 HLPFAERELILIKIAVNTAAR----RDVLDIAKIFRARAVDVSDHT  431 (472)
Q Consensus       390 ~~~~V~REL~LiKV~~~~~~r----~eI~~ia~iFrakIVDvs~~s  431 (472)
                      ..+ -.++...+++.+...+|    .+|.++...+++.|.++...+
T Consensus        84 ~~~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t  128 (192)
T 1u8s_A           84 PHD-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT  128 (192)
T ss_dssp             CCC-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             CCC-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc
Confidence            433 24444455555444445    345566666788887766443

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.52  E-value=1.4e-07  Score=75.97  Aligned_cols=71  Identities=21%  Similarity=0.322  Sum_probs=57.3

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hhhHHHHHHHHhcCceeeEE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-d~~ieQI~kQL~KLvdVikV  148 (472)
                      ++++|++...|+||+|++|+++++.+|+||.+++.........+++.++.. ...++++.++|.++-+...+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~   75 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNV   75 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTE
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            678999999999999999999999999999999998765322356665533 35799999999988765433

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.24  E-value=4.3e-05  Score=70.61  Aligned_cols=79  Identities=18%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeC-ChHHHHHHHHHHhccc----ceE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPG-TDESIGKLVQLLHKLI----DLH  383 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te----~~~iSRiTIVv~g-de~~ieQIvkQL~KLi----dVi  383 (472)
                      .+++|.+...|+||++++|+++|+++|.||.++......    ..+.--|.+.+.. +... ++|.+.|.++.    =-+
T Consensus        92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~~di  170 (195)
T 2nyi_A           92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFGVDI  170 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcCeEE
Confidence            468999999999999999999999999999998876443    3466667777653 2334 67777766432    224


Q ss_pred             EEEecCCch
Q 012043          384 EVQDITHLP  392 (472)
Q Consensus       384 ~V~dlt~~~  392 (472)
                      .+++.++.+
T Consensus       171 ~~~~~~~~~  179 (195)
T 2nyi_A          171 DLEEVVEGE  179 (195)
T ss_dssp             EEEECC---
T ss_pred             EEEECcccc
Confidence            555555443

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.99  E-value=2.2e-05  Score=75.71  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=65.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC---CCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK---EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~---~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++.....   .+...|++-+...  .+++++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            5689999999999999999999999999999999977651   3688888556544  9999999999999999999887


Q ss_pred             CchHHH
Q 012043          390 HLPFAE  395 (472)
Q Consensus       390 ~~~~V~  395 (472)
                      ...-++
T Consensus        81 ~~~~i~   86 (223)
T 1y7p_A           81 SFERVF   86 (223)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            655544

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.75  E-value=7.6e-05  Score=71.98  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=61.7

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC----CC-cEEEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~-~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++....    +. ..++|-++..  .++.++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            467999999999999999999999999999999998764    31 2366556543  9999999999999999999887


Q ss_pred             Cchhhh
Q 012043          153 NEPHVE  158 (472)
Q Consensus       153 ~~~~V~  158 (472)
                      .-..++
T Consensus        81 ~~~~i~   86 (223)
T 1y7p_A           81 SFERVF   86 (223)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            655544

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.22  E-value=0.0041  Score=53.94  Aligned_cols=71  Identities=15%  Similarity=0.339  Sum_probs=60.2

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCc
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL  391 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~  391 (472)
                      .|.|...|++|+|+.|+.+++..+.||.++.+.+.   +.  +.+.++ .+.+.+.++..+++++-++..+....-.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~   73 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWM   73 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCC
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCC
Confidence            47899999999999999999999999999999665   44  555555 4667899999999999999998776543

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.13  E-value=0.00094  Score=69.82  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=57.7

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH  383 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi  383 (472)
                      .+|.|.+.|.|+||||.+|+++|+..|++|+|+.-.+.. ..+...+.++++ ..|..+++.+++|++|-.|.
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            679999999999999999999999999999998876542 233478888888 47888999999999987664

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.13  E-value=0.0041  Score=53.90  Aligned_cols=69  Identities=12%  Similarity=0.304  Sum_probs=58.8

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecC
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      .|.|...|++|+|+.|+.+++..+.||.++.+.+.   +.+.+.+. .+.+.+..+..+++++-++..+....
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~   71 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP   71 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence            47899999999999999999999999999999665   55656555 45678999999999999999887654

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.11  E-value=0.028  Score=60.65  Aligned_cols=219  Identities=14%  Similarity=0.172  Sum_probs=128.7

Q ss_pred             EEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCChhhHHHHHHHHhcCc----------eeeEEEecCC
Q 012043           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQLNKLV----------NVIKVEDISN  153 (472)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~iTIVV~gdd~~ieQI~kQL~KLv----------dVikV~dlt~  153 (472)
                      -+.++||++.||-+.|++.|+||+-++.+..+... -++++++.++  +++..+-|+++.          ..-+|.    
T Consensus       277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~--~~~a~~~l~~~~~el~~~~~~~~~~~v~----  350 (600)
T 3l76_A          277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDL--LNTAEAVTSAIAPALRSYPEADQEAEII----  350 (600)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGG--HHHHHHHHHHHGGGGSSSTTCSSSSEEE----
T ss_pred             CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHH--HHHHHHHHHHHHHHhhccccccCcceeE----
Confidence            56789999999999999999999999877655432 3788887543  333333343322          112222    


Q ss_pred             chhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccce
Q 012043          154 EPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKI  227 (472)
Q Consensus       154 ~~~V~RELaLIKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlEvaRTG~i  227 (472)
                         +.+.+++|-|--.     +..-..+++.....+..|.-++.....|-+.=+.+..+..++.|.. |..-.       
T Consensus       351 ---~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~-------  420 (600)
T 3l76_A          351 ---VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL-------  420 (600)
T ss_dssp             ---EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB-------
T ss_pred             ---ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC-------
Confidence               4566777777532     2334467777776666665554333444444455555555555543 33110       


Q ss_pred             eeecCcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccC
Q 012043          228 ALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDE  307 (472)
Q Consensus       228 Al~Rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (472)
                          .     .                              .        ..+ -++.|       .++..   |+-.+.
T Consensus       421 ----t-----~------------------------------~--------~~~-~~~~~-------~~~v~---Gia~~~  442 (600)
T 3l76_A          421 ----S-----P------------------------------P--------KNQ-TDTSH-------LPAVR---GVALDQ  442 (600)
T ss_dssp             ----C-----C------------------------------C--------CCC-CC----------CCSCC---EEEEEC
T ss_pred             ----C-----C------------------------------c--------ccc-ccccc-------cCceE---EEEeeC
Confidence                0     0                              0        000 00111       11111   333333


Q ss_pred             CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CC--eEEEEEEEeCC-hHHHHHHHHHHhcccc
Q 012043          308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EG--LSCITTVVPGT-DESIGKLVQLLHKLID  381 (472)
Q Consensus       308 ~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~--~~--iSRiTIVv~gd-e~~ieQIvkQL~KLid  381 (472)
                      +..   +-++. -+.|+||+..||-+.+++.|+|+|=|.....+.  .+  ...|+++++.+ -+...++.+++.+-++
T Consensus       443 ~~a---~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~  517 (600)
T 3l76_A          443 DQA---QIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWL  517 (600)
T ss_dssp             SEE---EEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTST
T ss_pred             CEE---EEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcC
Confidence            322   23443 589999999999999999999999999988764  24  67899999843 2334455555554443

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.10  E-value=0.0018  Score=66.71  Aligned_cols=74  Identities=14%  Similarity=0.293  Sum_probs=62.4

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      ..+.|.+.=+|+||++.+|+.+|+..|+||.++.++...+.+++.|-+++....-+.+.++|+++-.|++|..+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            35678899999999999999999999999999999985544567777887644678899999999999998754

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=97.01  E-value=0.0018  Score=59.78  Aligned_cols=67  Identities=22%  Similarity=0.259  Sum_probs=50.5

Q ss_pred             ccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC----CCcE--EEEEEeC-ChhhHHHHHHHHhcC
Q 012043           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSG-TERVLRQVVEQLNKL  142 (472)
Q Consensus        75 ~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~~~--iTIVV~g-dd~~ieQI~kQL~KL  142 (472)
                      ....+++|.|...|+||++++|+++|+++|.||..+......    ..++  |++.+.. +... ++|.+.|.++
T Consensus        89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A           89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV  162 (195)
T ss_dssp             TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence            345689999999999999999999999999999998877443    2344  5555543 2334 7777777644

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.97  E-value=0.0043  Score=63.86  Aligned_cols=73  Identities=15%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      .+.|.+.=+|+||++.+|+.+|+..|+||.+..++.  ..++.-|.+-+++....-+.+.++|+++-.|++|..+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            456889999999999999999999999999999998  6677778887887644668999999999999999754

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=96.92  E-value=0.0053  Score=55.17  Aligned_cols=129  Identities=18%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             EEEEEE-EcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043           80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (472)
Q Consensus        80 htISIl-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~  156 (472)
                      ..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +  .++++++.++  .++..+.|+++..=+..    ..-.
T Consensus        26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~--~~~a~~~l~~~~~~l~~----~~i~   98 (167)
T 2re1_A           26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGD--YKQTLEILSERQDSIGA----ASID   98 (167)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGG--HHHHHHHHHHSSTTTTC----SEEE
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechH--HHHHHHHHHHHHHHcCC----ceEE
Confidence            456676 79999999999999999999999999876544 4  4888887533  23333444433211111    1112


Q ss_pred             hhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 012043          157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG  217 (472)
Q Consensus       157 V~RELaLIKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG  217 (472)
                      +.+.++++-|-...     .--..+++....++..|  +..++.++.+=+  +.+..+..++.|. .|+
T Consensus        99 ~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv--~~~d~~~av~~Lh~~f~  165 (167)
T 2re1_A           99 GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI--DEKYMELATRVLHKAFN  165 (167)
T ss_dssp             EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred             ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE--eHHHHHHHHHHHHHHhc
Confidence            45678888886543     33457888888877777  444555555554  3344444555443 354

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.81  E-value=0.0022  Score=67.04  Aligned_cols=73  Identities=11%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             cccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC--C-CcEEEEEEe-CChhhHHHHHHHHhcCceee
Q 012043           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--D-KALFTIVVS-GTERVLRQVVEQLNKLVNVI  146 (472)
Q Consensus        74 ~~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d-~~~iTIVV~-gdd~~ieQI~kQL~KLvdVi  146 (472)
                      .+-..+|.|.+.+.|+||||++|+++|+..|++|+|+...+..  + ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus       354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            4445789999999999999999999999999999999876542  1 123556665 57889999999999986664

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.61  E-value=0.0046  Score=61.69  Aligned_cols=66  Identities=11%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhc
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~K  141 (472)
                      ++++++|++...|+||+.++|++.++.+|.||..++.......++  |.+.++.++  ..++++...|+.
T Consensus        19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~   88 (302)
T 3o1l_A           19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP   88 (302)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence            567899999999999999999999999999999999775444566  566666433  356667666644

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.54  E-value=0.0046  Score=61.37  Aligned_cols=66  Identities=12%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC----hhhHHHHHHHHhc
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLNK  141 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd----d~~ieQI~kQL~K  141 (472)
                      .+++++|++...|+||+.++|++.++.+|.||..++.......++  |.+.++.+    ...++++...|+.
T Consensus         7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~   78 (292)
T 3lou_A            7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP   78 (292)
T ss_dssp             -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence            356789999999999999999999999999999999774444565  55555544    2346666666644

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.53  E-value=0.005  Score=60.85  Aligned_cols=65  Identities=3%  Similarity=-0.067  Sum_probs=49.2

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhhHHHHHHHHhc
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNK  141 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-d~~ieQI~kQL~K  141 (472)
                      |.+++|++...|+||+.++|++.|+.+|.||..++.......+.  |.+.++.+ +..++++...++.
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~   73 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAE   73 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999774445565  56666543 2346666666543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.46  E-value=0.004  Score=65.80  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=57.3

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      -|+|-+...|+||++.+|+.++...|+||..+.++.....  ++|.|.++.  ..-+.+.++|.++.+|.+|..+
T Consensus       454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~--~~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEE
T ss_pred             ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC--CCCHHHHHHHhcCCCccEEEEE
Confidence            4799999999999999999999999999999999987654  357777763  3345566777777777777644

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.41  E-value=0.0065  Score=60.14  Aligned_cols=64  Identities=13%  Similarity=0.201  Sum_probs=49.3

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhc
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~K  141 (472)
                      .+++|++...|+||+.++|++.++.+|.||..++.-.+...+.  |.+.++.++  ..++++...|+.
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHH
Confidence            3689999999999999999999999999999999865555565  555555332  356667666643

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.41  E-value=0.0074  Score=60.22  Aligned_cols=69  Identities=10%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhc
Q 012043          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK  378 (472)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~K  378 (472)
                      .|+.+++|++...|+||+.++||+.++.+|.||..++.-.....+.--|.+.++.++  ..++++.+.|+.
T Consensus        18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~   88 (302)
T 3o1l_A           18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP   88 (302)
T ss_dssp             CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred             cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence            477889999999999999999999999999999999887554556666666666432  245666655543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.39  E-value=0.013  Score=60.93  Aligned_cols=73  Identities=15%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      .|.|.+.=+|.||+|.+|..+|+..|+||+...-....+-++..+=+++....-+.+.++|+++-.|++|..+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            5789999999999999999999999999999997666666665555663355678999999999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.39  E-value=0.0059  Score=64.52  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      .|+|-+...|+||++.+|+.++...|+||.++.++..+..+..=|.|-++..  .-+.+.++|.++.+|.+|..+
T Consensus       454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred             ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence            3899999999999999999999999999999999998877777777777742  345666777777788777654

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.30  E-value=0.0074  Score=59.70  Aligned_cols=62  Identities=15%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHH
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL  139 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL  139 (472)
                      ++++|++...|+||+.++|++.++.+|.||..++.-.+...++  |.+.++.+...++++...|
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f   69 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF   69 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence            4689999999999999999999999999999999865555666  5555655432333444444

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.21  E-value=0.01  Score=58.82  Aligned_cols=69  Identities=14%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC----hHHHHHHHHHHhc
Q 012043          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLLHK  378 (472)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd----e~~ieQIvkQL~K  378 (472)
                      ..+++++|++...|+||+.++||+.++.+|.||..++.-.....+.--|.+.+..+    ...++++...|+.
T Consensus         6 ~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~   78 (292)
T 3lou_A            6 QRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP   78 (292)
T ss_dssp             --CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred             CCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence            44567999999999999999999999999999999988744445555555555433    2345555555543

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.17  E-value=0.011  Score=58.48  Aligned_cols=125  Identities=10%  Similarity=0.134  Sum_probs=72.8

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcc---cce-EEEEe
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL---IDL-HEVQD  387 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~KL---idV-i~V~d  387 (472)
                      +++|++...|+||+.++||+.++.+|.||..++.-.+...+.--|.+.+..++  ..++++.+.|+.+   .++ +++.+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~   85 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD   85 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEeec
Confidence            58999999999999999999999999999999986555556555555554322  3455665555433   222 45554


Q ss_pred             cCCchHHHHhhheeEEecCcccHHHHHHHHHH--hCcEEEEecCCh-hhhhHhhccCCc
Q 012043          388 ITHLPFAERELILIKIAVNTAARRDVLDIAKI--FRARAVDVSDHT-ITLERLLEPYGI  443 (472)
Q Consensus       388 lt~~~~V~REL~LiKV~~~~~~r~eI~~ia~i--FrakIVDvs~~s-itiE~lL~pyGI  443 (472)
                      -....   |  ..|=++-...+-..+++-++.  ..++|+-|-.+. =.+.++.+.+||
T Consensus        86 ~~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~gI  139 (288)
T 3obi_A           86 RETRR---K--VMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDI  139 (288)
T ss_dssp             TTSCE---E--EEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTTC
T ss_pred             cCCCc---E--EEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcCC
Confidence            43211   1  111122222223344443322  346666554333 334455666775

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.11  E-value=0.041  Score=55.17  Aligned_cols=139  Identities=14%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChh--hHHHHHHHHhcCc---e-eeEEE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKVE  149 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~--~ieQI~kQL~KLv---d-VikV~  149 (472)
                      ++++|++.-.|+||+.++|++.++++|.||..+....  ..+.  |.+.+..++.  .++++.+.|+.+-   . -+++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            5789999999999999999999999999999998764  3455  5555665543  3477777776552   1 24455


Q ss_pred             ecCCchhhhh-heeeEEEeCCC---CCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCCh---hHHH-HHHHHhcc
Q 012043          150 DISNEPHVER-ELMLIKLNGDT---STWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDP---GKMV-AVQRNLSK  215 (472)
Q Consensus       150 dlt~~~~V~R-ELaLIKV~~~~---~~r~eI~~l~~~FrAkIVDvs~~s------l~iE~TG~~---~KId-afi~~L~~  215 (472)
                      +.+......+ ...++-+-...   ..-.+|..+...++..|-++..-+      +-+.+.+++   +.+. ++.+++..
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~  168 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE  168 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence            5444322222 33444443332   233456666666678887775544      335555554   3333 34444566


Q ss_pred             CCc
Q 012043          216 FGI  218 (472)
Q Consensus       216 fGI  218 (472)
                      +++
T Consensus       169 ~~v  171 (415)
T 3p96_A          169 EHV  171 (415)
T ss_dssp             HTC
T ss_pred             cCc
Confidence            665

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.10  E-value=0.014  Score=57.75  Aligned_cols=66  Identities=12%  Similarity=0.028  Sum_probs=48.9

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHh
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLH  377 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-~~ieQIvkQL~  377 (472)
                      |.+++|++...|+||+.++||+.++.+|.||..++.-.....+.--|.+.++.++ ..++++.+.|+
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~   72 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLA   72 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHH
Confidence            4568999999999999999999999999999999887544556655666665422 23455554443

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=95.96  E-value=0.017  Score=57.18  Aligned_cols=126  Identities=13%  Similarity=0.088  Sum_probs=74.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh---cccce-EEEEec
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH---KLIDL-HEVQDI  388 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~---KLidV-i~V~dl  388 (472)
                      ++++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.+..+....+++.+.|+   +-.++ +++.+-
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~~   85 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFRPR   85 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEeecc
Confidence            46899999999999999999999999999999998755566777777777654333445555543   32333 455554


Q ss_pred             CCchHHHHhhheeEEecCcccHHHHHHHHH--HhCcEEEEecCChhh-hhHhhccCCc
Q 012043          389 THLPFAERELILIKIAVNTAARRDVLDIAK--IFRARAVDVSDHTIT-LERLLEPYGI  443 (472)
Q Consensus       389 t~~~~V~REL~LiKV~~~~~~r~eI~~ia~--iFrakIVDvs~~sit-iE~lL~pyGI  443 (472)
                      ....   |  ..|=++-...+-..+++-.+  ...++|+-|-.+.=. +.++.+.+||
T Consensus        86 ~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~gI  138 (287)
T 3nrb_A           86 TDRK---K--VVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDI  138 (287)
T ss_dssp             TCCC---E--EEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTTS
T ss_pred             CCCc---E--EEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcCC
Confidence            3211   1  11112222222334444332  235677655433322 4555666775

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=95.83  E-value=0.023  Score=50.91  Aligned_cols=105  Identities=10%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             EEEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCch
Q 012043          315 HTLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP  392 (472)
Q Consensus       315 htLSil-VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~  392 (472)
                      ..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +...++++++.++ +...++.+++.+-.....+       
T Consensus        26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i-------   97 (167)
T 2re1_A           26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI-------   97 (167)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE-------
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE-------
Confidence            355666 79999999999999999999999999876554 5667999998532 2344444444333332111       


Q ss_pred             HHHHhhheeEEecCc-----ccHHHHHHHHHHhCcEEEEe
Q 012043          393 FAERELILIKIAVNT-----AARRDVLDIAKIFRARAVDV  427 (472)
Q Consensus       393 ~V~REL~LiKV~~~~-----~~r~eI~~ia~iFrakIVDv  427 (472)
                      .+.+.++++-|-...     .--..+++....++-.|..+
T Consensus        98 ~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           98 DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            233556777765432     22357777777777777444

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.78  E-value=0.028  Score=58.36  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      .|-|.+.=+|.||+|.+|+.+|+..|+||+...-....+-++  ..+=+++..+.-+.+.++|+++-.|++|+.+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y--~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY--LVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE--EEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            478999999999999999999999999999988665544443  3333443356778999999999999999864

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=95.32  E-value=0.11  Score=51.47  Aligned_cols=73  Identities=15%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V  385 (472)
                      .|-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=++|  ++..+.+..+.|++.-.-+++
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            4678888889999999999999999999999999998875 466667777776  456799999999988665554

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=94.96  E-value=0.26  Score=44.66  Aligned_cols=129  Identities=18%  Similarity=0.231  Sum_probs=77.6

Q ss_pred             EEEE-EEcCcchHHHHHHHHHhccCceeeeEeeeecC--CC-cEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043           81 TISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (472)
Q Consensus        81 tISI-lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~-~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~  156 (472)
                      .|++ .+.|+||.+.+|...|++.|+||+-++.+...  +. ..+++++..++  .++..+.|+++..=+...    .-.
T Consensus        17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~----~v~   90 (178)
T 2dtj_A           17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWT----NVL   90 (178)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCS----EEE
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCC----eEE
Confidence            4555 46899999999999999999999999876432  22 23777776433  344445555432211111    112


Q ss_pred             hhhheeeEEEeCCC-CCH----HHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 012043          157 VERELMLIKLNGDT-STW----PEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (472)
Q Consensus       157 V~RELaLIKV~~~~-~~r----~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~~-fG  217 (472)
                      +.+++++|-|-... ..+    ..+++.....+-.|  +.-++.++.+=+  +.+..+..++.|.. |+
T Consensus        91 ~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~  157 (178)
T 2dtj_A           91 YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  157 (178)
T ss_dssp             EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred             EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence            45788888886543 222    35555555555566  444555544444  55666666666553 54

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.69  E-value=0.22  Score=49.23  Aligned_cols=71  Identities=21%  Similarity=0.370  Sum_probs=56.5

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCceeeEE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvdVikV  148 (472)
                      .+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + +-|-++|  ++..+.+..+.|++.-.-+++
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            56688888899999999999999999999999999888654 3 3 5555665  456788889999887654443

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=94.68  E-value=0.089  Score=52.70  Aligned_cols=115  Identities=14%  Similarity=0.070  Sum_probs=72.7

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--HHHHHHHHHhccc---c-eEEEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKLI---D-LHEVQ  386 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~--~ieQIvkQL~KLi---d-Vi~V~  386 (472)
                      .+++|++.-.|+||+.++|++.++++|.||..+.....  .+.--|.+.+..++.  ..++|.+.|..+-   . -+++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            46899999999999999999999999999999888653  455566666665544  3467777665542   2 24566


Q ss_pred             ecCCchHHHH-hhheeEEecCc---ccHHHHHHHHHHhCcEEEEecC
Q 012043          387 DITHLPFAER-ELILIKIAVNT---AARRDVLDIAKIFRARAVDVSD  429 (472)
Q Consensus       387 dlt~~~~V~R-EL~LiKV~~~~---~~r~eI~~ia~iFrakIVDvs~  429 (472)
                      +.+......+ ...++-+-...   ..-.+|.++...++..|-++..
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~  135 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRG  135 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceee
Confidence            5554322222 23344343322   2234555555556677665543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.63  E-value=0.12  Score=51.82  Aligned_cols=75  Identities=20%  Similarity=0.345  Sum_probs=59.9

Q ss_pred             CCceEEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEE
Q 012043          310 SGLRSHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHE  384 (472)
Q Consensus       310 ~~~~~htLSilVe-N~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~  384 (472)
                      ++-.|-.|.+.+. |+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+.|  ++..+.+..+.|++.-.-++
T Consensus       197 ~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~k  275 (313)
T 3mwb_A          197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATR  275 (313)
T ss_dssp             CSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCE
T ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEE
Confidence            4556778888884 999999999999999999999999888764 466677777776  56778888888888644333

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=94.37  E-value=0.12  Score=47.42  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             EEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCchhhhhh
Q 012043           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (472)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~~~V~RE  160 (472)
                      -+.|+||.+.||.+.|++.|+||+.++...++ +.+.  ++++++.++ ....++.+++.+-+..-+|.       +.+.
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~   95 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH   95 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence            47899999999999999999999999876555 2444  888887544 22333333332212222222       3456


Q ss_pred             eeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 012043          161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (472)
Q Consensus       161 LaLIKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fG  217 (472)
                      +++|-|--.. .+    -..+++.....+-.|.-++...+.|-+.=+.+..+..++.|.. |+
T Consensus        96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH~~f~  158 (181)
T 3s1t_A           96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFG  158 (181)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred             EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHHHHc
Confidence            7777764322 12    2355666665566655554333444444455555555555543 54

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=94.15  E-value=0.14  Score=45.66  Aligned_cols=120  Identities=16%  Similarity=0.196  Sum_probs=72.3

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCchhhhhhe
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL  161 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~~~V~REL  161 (472)
                      +.|+||++.||.+.+++.|+||+-++.+.+. +.+  -++++++.++ +...++.+++.+-... .+.       +.+.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987652 334  4888887543 2222333332222222 333       45678


Q ss_pred             eeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043          162 MLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK  215 (472)
Q Consensus       162 aLIKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~~  215 (472)
                      +++-|-...     .--..+++.....+-.|  +.-++.  .+-+.=+.+..+..++.|..
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~--~is~vv~~~d~~~Av~~Lh~  154 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEV--RISVIIPAEYAEAALRAVHQ  154 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSS--EEEEEEEGGGHHHHHHHHHH
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCC--EEEEEEeHHHHHHHHHHHHH
Confidence            888775532     22335666665555666  443433  33333345556666666654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=94.05  E-value=0.21  Score=45.70  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCchHHHHh
Q 012043          320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAERE  397 (472)
Q Consensus       320 lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~~V~RE  397 (472)
                      -+.|+||.+.||.+.|++.|+||+-++...++ +.+...++++++.++ +...++.+++.+-+..-+|.       +...
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~   95 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH   95 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence            47899999999999999999999999876665 357788999999654 33444444433222222222       2234


Q ss_pred             hheeEEecCc-cc----HHHHHHHHHHhCcEEEEec
Q 012043          398 LILIKIAVNT-AA----RRDVLDIAKIFRARAVDVS  428 (472)
Q Consensus       398 L~LiKV~~~~-~~----r~eI~~ia~iFrakIVDvs  428 (472)
                      +++|-|--.. ..    -..+++....-+-+|.-++
T Consensus        96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            6666653221 12    2345555544455544443

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=93.99  E-value=0.22  Score=49.92  Aligned_cols=69  Identities=22%  Similarity=0.356  Sum_probs=53.6

Q ss_pred             cceEEEEEEEE-cCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043           76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (472)
Q Consensus        76 ~~~~htISIlV-eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvd  144 (472)
                      ...|-.|.+.+ +|+||.|.++.+.|+.||+|...|---|+... + + |-|-++|  ++..+.+..+.|++.-.
T Consensus       198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~  272 (313)
T 3mwb_A          198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP  272 (313)
T ss_dssp             SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence            34567788888 49999999999999999999999988887654 2 3 5555665  56678888888877643

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=93.98  E-value=0.18  Score=44.62  Aligned_cols=50  Identities=6%  Similarity=0.059  Sum_probs=42.9

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      .++||++.|+...|++.|+||+-++.++.      +++++++.++ .++++.+.|.+
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~   78 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSD   78 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTT
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhc
Confidence            47899999999999999999999986542      7999999654 67888888887

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=93.70  E-value=0.16  Score=46.11  Aligned_cols=103  Identities=14%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             EEEE-EEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEEecCC
Q 012043          316 TLSM-LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITH  390 (472)
Q Consensus       316 tLSi-lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~gde~~ieQIvkQL~KL---idVi~V~dlt~  390 (472)
                      .|++ .+.|+||.+.+|...+++.|+||+-++.+....+ +-..|++++..+  ..++..+.|+++   .....+     
T Consensus        17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~--d~~~a~~~l~~~~~~~~~~~v-----   89 (178)
T 2dtj_A           17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS--DGRRAMEILKKLQVQGNWTNV-----   89 (178)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH--HHHHHHHHHHTTTTTTTCSEE-----
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc--cHHHHHHHHHHHHHhcCCCeE-----
Confidence            3445 4689999999999999999999999987643222 356778888743  234444445543   222222     


Q ss_pred             chHHHHhhheeEEecCcc-cH----HHHHHHHHHhCcEEEEe
Q 012043          391 LPFAERELILIKIAVNTA-AR----RDVLDIAKIFRARAVDV  427 (472)
Q Consensus       391 ~~~V~REL~LiKV~~~~~-~r----~eI~~ia~iFrakIVDv  427 (472)
                        .+..++++|-|-...- .+    ..+++.....+-.|.-+
T Consensus        90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence              2345677777754321 22    34555555545555444

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.45  E-value=0.21  Score=49.12  Aligned_cols=70  Identities=13%  Similarity=0.211  Sum_probs=55.0

Q ss_pred             eEEEEEEEE---cCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E---EEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043           78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        78 ~~htISIlV---eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~---iTIVV~gdd~~ieQI~kQL~KLvdVikV  148 (472)
                      .|-.|.+.+   .|+||.|.++.+.|+.||+|+..|---|+... + +   +-+. +-++..+.+..+.|++.-.-+++
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence            355778888   89999999999999999999999998887654 2 3   3444 55667788999999877655444

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=93.42  E-value=0.21  Score=44.17  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEE
Q 012043           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL  166 (472)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV  166 (472)
                      .++||++.|+-+.|++.|+||+-++.++    ..++++++.++ .++++.+.|.+.   -.|.       +.+.+++|-|
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~vsv   93 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVIICI   93 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEEEE
Confidence            4799999999999999999999998643    26888887554 678888888772   1222       3457788887


Q ss_pred             eCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 012043          167 NGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (472)
Q Consensus       167 ~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~  214 (472)
                      --.     +..-..+++...  +..|.-++  .....|.+.=+.+..+..++.|.
T Consensus        94 vG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh  146 (157)
T 3mah_A           94 VGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS  146 (157)
T ss_dssp             EC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred             ECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence            543     223334555444  44444443  33334444555555555555554

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=93.22  E-value=0.18  Score=45.09  Aligned_cols=96  Identities=11%  Similarity=0.114  Sum_probs=58.9

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCchHHHHhh
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL  398 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL  398 (472)
                      +.|+||++.|+.+.+++.|+||+-++.+.+. +.+...++++++.++ +...++.+++.+-... .+.       ++..+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987652 335667999998543 2233444433222232 332       23566


Q ss_pred             heeEEecCcc-cH----HHHHHHHHHhCcEE
Q 012043          399 ILIKIAVNTA-AR----RDVLDIAKIFRARA  424 (472)
Q Consensus       399 ~LiKV~~~~~-~r----~eI~~ia~iFrakI  424 (472)
                      +++-|-...- .+    ..+++.....+-.|
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI  126 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANI  126 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCE
Confidence            6666654321 12    34444444444444

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=92.76  E-value=0.37  Score=47.34  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=57.1

Q ss_pred             EEEEEEEE---eCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          314 SHTLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       314 ~htLSilV---eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      |-.|.+.+   .|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=++ -++..+.+..++|++.-.-+++
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence            56788888   8999999999999999999999999988865 35555555454 4567789999999887655444

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=92.75  E-value=0.41  Score=48.37  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=54.8

Q ss_pred             EEEEEEEe--CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 012043          315 HTLSMLVN--NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       315 htLSilVe--N~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V  385 (472)
                      .++.+.+.  |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|=++|  ++..+.+..+.|++.-.-+++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            34444444  799999999999999999999999888765 455666666776  457789999999888655554

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=92.48  E-value=0.27  Score=51.44  Aligned_cols=73  Identities=12%  Similarity=0.164  Sum_probs=54.5

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEE-eCChhhHHHHHHHHhcC-ceeeEEE
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVV-SGTERVLRQVVEQLNKL-VNVIKVE  149 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV-~gdd~~ieQI~kQL~KL-vdVikV~  149 (472)
                      ..+-.|.+.+.|+||.|.++.+.|+.+|+|+..|---|+... +-  +-|-+ +-++..+.++++.|.+. ..-+++-
T Consensus        32 ~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL  109 (429)
T 1phz_A           32 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL  109 (429)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence            356678888899999999999999999999999988887654 32  22222 33455588899999888 5544443

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=91.61  E-value=1  Score=46.08  Aligned_cols=129  Identities=16%  Similarity=0.248  Sum_probs=79.7

Q ss_pred             EEEEEE-EcCcchHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCc
Q 012043           80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE  154 (472)
Q Consensus        80 htISIl-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~  154 (472)
                      ..|++. +.|+||.+.||...|++.|+||+-++...++ ..+  .++++++.++ ....++.+++.+-+..-.|      
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------  338 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------  338 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE------
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE------
Confidence            456666 7899999999999999999999999763332 123  4888888543 3344555555433332222      


Q ss_pred             hhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 012043          155 PHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG  217 (472)
Q Consensus       155 ~~V~RELaLIKV~~~-----~~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG  217 (472)
                       .+++.+++|-|-..     +.--..+++.....+-.|  +.-++.++.+=+  +.+..+..++.|. .|.
T Consensus       339 -~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          339 -LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  406 (421)
T ss_dssp             -EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred             -EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence             24567888887653     233456777666656666  555555555444  3444555555554 355

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=91.60  E-value=0.25  Score=46.44  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             cccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhc
Q 012043          302 GILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHK  378 (472)
Q Consensus       302 ~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gde-~~ieQIvkQL~K  378 (472)
                      |+-++.+...   -+|. -+.|+||++.||-+.|++.|+||+-|+.+.++ +.+...++++++.++ +...++.+++.+
T Consensus        28 GIa~~~~~a~---Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~  102 (200)
T 4go7_X           28 GVAHDRSEAK---VTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRN  102 (200)
T ss_dssp             EEEEECSEEE---EEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHH
T ss_pred             EEEccCCEEE---EEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHh
Confidence            4444444333   3443 58999999999999999999999999988776 346778888888543 334444444443

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=91.28  E-value=0.58  Score=49.04  Aligned_cols=77  Identities=13%  Similarity=0.116  Sum_probs=57.5

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEe-CChHHHHHHHHHHhcc-cceEEEE
Q 012043          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVP-GTDESIGKLVQLLHKL-IDLHEVQ  386 (472)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~-gde~~ieQIvkQL~KL-idVi~V~  386 (472)
                      ++-.+-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... .-..+-|=+. -++..+.++++.|++. ..-++|-
T Consensus        30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL  109 (429)
T 1phz_A           30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL  109 (429)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence            34457788888899999999999999999999999998887643 3333333343 2344588999999988 5555553

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=90.88  E-value=0.85  Score=46.03  Aligned_cols=69  Identities=14%  Similarity=0.293  Sum_probs=51.2

Q ss_pred             EEEEEEEc--CcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCceeeEE
Q 012043           80 HTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        80 htISIlVe--N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvdVikV  148 (472)
                      .++.+.+.  |+||.|.++.+.|+.||+|...|---|+... + + |=|-++|  +|..+.+..+.|++.-.-+++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            34444443  7999999999999999999999998887654 2 2 5566666  456788888888887554444

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=90.87  E-value=1  Score=46.13  Aligned_cols=102  Identities=12%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             EEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCC-hHHHHHHHHHHhcccceEEEEecCCch
Q 012043          316 TLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEVQDITHLP  392 (472)
Q Consensus       316 tLSil-VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gd-e~~ieQIvkQL~KLidVi~V~dlt~~~  392 (472)
                      .|++. +.|+||.+.+|...|++.|+||+-++...++ ..+...++++++.+ .+...++.+++.+-+..-.|       
T Consensus       266 ~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v-------  338 (421)
T 3ab4_A          266 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV-------  338 (421)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE-------
T ss_pred             EEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE-------
Confidence            45666 7899999999999999999999999763333 13567899999854 33455666665544442222       


Q ss_pred             HHHHhhheeEEecCc-----ccHHHHHHHHHHhCcEE
Q 012043          393 FAERELILIKIAVNT-----AARRDVLDIAKIFRARA  424 (472)
Q Consensus       393 ~V~REL~LiKV~~~~-----~~r~eI~~ia~iFrakI  424 (472)
                      .+++.++++-|-...     .--..+++.....+-.|
T Consensus       339 ~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI  375 (421)
T 3ab4_A          339 LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNI  375 (421)
T ss_dssp             EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCC
T ss_pred             EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCE
Confidence            223466777665432     11245555555544555

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=89.25  E-value=0.37  Score=45.30  Aligned_cols=125  Identities=17%  Similarity=0.146  Sum_probs=70.4

Q ss_pred             EEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChhhHHHHHHHHhcCce---eeEEEecCCchhhh
Q 012043           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLVN---VIKVEDISNEPHVE  158 (472)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~--~iTIVV~gdd~~ieQI~kQL~KLvd---VikV~dlt~~~~V~  158 (472)
                      -+.|+||+++||-+.|++.|+||+-++.+.++.. +  .++.++..++  .++..+.|+++..   .-++.       ++
T Consensus        42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d--~~~~~~~l~~~~~~~~~~~v~-------~~  112 (200)
T 4go7_X           42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--GPAAVEKLDSLRNEIGFSQLL-------YD  112 (200)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG--HHHHHHHHHTTHHHHCCSEEE-------EE
T ss_pred             cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh--HHHHHHHHHHHHhhhceeeEE-------Ee
Confidence            4789999999999999999999999988776532 2  2677776433  3344444444432   22332       44


Q ss_pred             hheeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 012043          159 RELMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS-KFGI  218 (472)
Q Consensus       159 RELaLIKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~-~fGI  218 (472)
                      ..++.|-|--.. ..    -+.+++....-+-.|.-++..-+.|-+.=+.+..+..++.|- .|++
T Consensus       113 ~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~Av~aLH~~F~L  178 (200)
T 4go7_X          113 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGL  178 (200)
T ss_dssp             CCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHHTC
T ss_pred             cCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHhCC
Confidence            556655553222 11    235555554444444333322233333335555555555554 3664

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=89.20  E-value=2.2  Score=35.53  Aligned_cols=70  Identities=21%  Similarity=0.337  Sum_probs=62.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee-ecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH  383 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg-~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi  383 (472)
                      +-.++.|.|+|+--+-.+|-.++++.|-.|-. -+| |..+.+++=|+++++|+.+.+..+..+|.+|-.|-
T Consensus         6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            45799999999999888999999999999987 555 56668999999999999999999999999998774

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1

Probab=87.80  E-value=3.5  Score=35.49  Aligned_cols=70  Identities=20%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhcc---CceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRR---GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRR---gyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      ..+.+.+...+.++..+.|..+|.+.   +|.+   .+-++....+-.+|+.+. .+.++++.|-+.|.+.-.|.-|
T Consensus        35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV  108 (109)
T 1rwu_A           35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV  108 (109)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            56999999999999999999999998   8987   558889999999999988 5778899999999998887754

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=86.20  E-value=3.4  Score=34.44  Aligned_cols=70  Identities=10%  Similarity=0.109  Sum_probs=57.6

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhhHHHHHHHHhcCceee
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI  146 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gdd~~ieQI~kQL~KLvdVi  146 (472)
                      .+-..+.|.++|+--+-.+|=.++++.|-.|-.=.-=|-.+.  ++|+++++|+.+.+..+..+|.+|--|-
T Consensus         5 ~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            5 KRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             CEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             eeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            355899999999998888999999999999975433344444  4599999999999999999999987763

>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A

Probab=85.17  E-value=2.8  Score=34.41  Aligned_cols=70  Identities=6%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             eEEEEEEEEeCchh-HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          313 RSHTLSMLVNNTPG-VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       313 ~~htLSilVeN~pG-VL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      ..+++.+...+.++ ....|..+| +|++.++.  .-++....+..+|+.+. .+.++++.|-+.|.+.-.|.-|
T Consensus        14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v   85 (86)
T 2h9z_A           14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            57999999999999 999999999 77886643  46778889999999988 5778899999999998887655

>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13

Probab=84.23  E-value=2.9  Score=34.48  Aligned_cols=60  Identities=13%  Similarity=0.101  Sum_probs=47.3

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 012043          163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (472)
Q Consensus       163 LIKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lEva  222 (472)
                      ++|+....  ...+-|-++++.|+..+       -.+   .-.+|++|+.|+.++++++++.|+..|+ +|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (101)
T 2qrr_A           25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL   97 (101)
T ss_dssp             EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence            78887654  45567999999987543       333   3378999999999999999999999996 6765

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=82.98  E-value=7  Score=40.69  Aligned_cols=116  Identities=14%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--hHHHHHHHHhcCceeeEEEecCCchhhhhheeeE
Q 012043           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI  164 (472)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~--~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLI  164 (472)
                      .++||++.||...|++.|+||+.++.++    .-++++++.++.  .++++.+.|.+....-+|.       +.+.+++|
T Consensus       309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~----~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V  377 (446)
T 3tvi_A          309 NSEVGFCRKILSILEMYGVSFEHMPSGV----DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV  377 (446)
T ss_dssp             GGSTTHHHHHHHHHHTTTCCEEEBCEET----TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred             CccHHHHHHHHHHHHHcCCcEEEEecCC----CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence            5799999999999999999999987542    357888875542  4677888887765543333       55678888


Q ss_pred             EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHh
Q 012043          165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNL  213 (472)
Q Consensus       165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L  213 (472)
                      -|--.     +..-..+++.....+-.|.-++  ...+.|-+.=+.+..+..++.|
T Consensus       378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aL  433 (446)
T 3tvi_A          378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSI  433 (446)
T ss_dssp             EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHH
T ss_pred             EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHH
Confidence            87432     3345577777777777775554  3334344444445555555554

>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13

Probab=82.30  E-value=2.7  Score=34.57  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=46.4

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 012043          163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (472)
Q Consensus       163 LIKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lEva  222 (472)
                      ++|+....  ...+-|-++++.|+..+       -.+   .-.+|++|+.|+.+.++++++.|+..|+ +|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (100)
T 2qsw_A           25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   97 (100)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence            67776643  45667899999886543       332   3378999999999999999999999996 5665

>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13

Probab=81.70  E-value=2  Score=35.58  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=47.2

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEeC-ChhHHHHHHHHhccCCc-EEEee
Q 012043          163 LIKLNGDT--STWPEIMWLVDIFRA-------KVVDI---SEHALTIEVTG-DPGKMVAVQRNLSKFGI-KELAR  223 (472)
Q Consensus       163 LIKV~~~~--~~r~eI~~l~~~FrA-------kIVDv---s~~sl~iE~TG-~~~KIdafi~~L~~fGI-lEvaR  223 (472)
                      ++|+....  ...+-|-++++.|+.       +|-.+   .-.+|++|+.| +++.++++++.|+..|+ +|...
T Consensus        22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg   96 (98)
T 3ced_A           22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR   96 (98)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            78887653  455678899998854       44443   33789999999 89999999999999996 67763

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=81.65  E-value=3.6  Score=44.32  Aligned_cols=127  Identities=10%  Similarity=0.145  Sum_probs=84.3

Q ss_pred             EEcCcchHHHHHHHHHhccCceeeeEeeeecCC--Cc----EEEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCchhh
Q 012043           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KA----LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHV  157 (472)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~----~iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~~~V  157 (472)
                      -+.|+||+..||-+.+++.|+|+|-+.....+.  .+    -+++++..++ ....++.+++.+-++-.++.       +
T Consensus       451 ~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~v~-------~  523 (600)
T 3l76_A          451 HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIV-------V  523 (600)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCEEE-------E
T ss_pred             cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCceEE-------E
Confidence            578999999999999999999999998887663  13    3788886332 33344444444333322222       4


Q ss_pred             hhheeeEEEeC-----CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 012043          158 ERELMLIKLNG-----DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS-KFGI  218 (472)
Q Consensus       158 ~RELaLIKV~~-----~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~-~fGI  218 (472)
                      ...+++|-|--     .+..-..+++....-+-.|.=++..-+.|-+.=+.+..+..++.|. .|++
T Consensus       524 ~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~l  590 (600)
T 3l76_A          524 NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNL  590 (600)
T ss_dssp             ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTT
T ss_pred             eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhCC
Confidence            45677666632     2344457777777777777777666666776667777777777775 4764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	472
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	6e-29
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	3e-26
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	7e-29
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	3e-28
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	3e-28
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	1e-25
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	3e-27
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	2e-18
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	1e-26
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	8e-18
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	7e-23
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	1e-15
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	1e-15
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	5e-09
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	3e-15
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	2e-12
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	2e-13
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	3e-12
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	3e-06
d2f06a1	71	d.58.18.11 (A:71-141) Hypothetical protein BT0572	8e-06
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	3e-05

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  106 bits (267), Expect = 6e-29
 Identities = 34/76 (44%), Positives = 55/76 (72%), Gaps = 2/76 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 2   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 61

Query: 137 EQLNKLVNVIKVEDIS 152
           +QLNKL+ V+K+ D+S
Sbjct: 62  KQLNKLIEVVKLIDLS 77

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 98.9 bits (247), Expect = 3e-26
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           H +S+L+ N  G L+ V G+ S RGYNI+SL+V P E   LS +T V  G DE + ++ +
Sbjct: 3   HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITK 62

Query: 375 LLHKLIDLHEVQDIT 389
            L+KLI++ ++ D++
Sbjct: 63  QLNKLIEVVKLIDLS 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (266), Expect = 7e-29
 Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           ++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G ++ + Q
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 135 VVEQLNKLVNVIKVEDI 151
           + +Q  KLV V+KV  I
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 31/77 (40%), Positives = 52/77 (67%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +R H +SMLV+N PGV+  V  + +RRG+NI S+ VG +E  GLS +  +V G D++I +
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 372 LVQLLHKLIDLHEVQDI 388
           + +  +KL+++ +V  I
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (262), Expect = 3e-28
 Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 1   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 60

Query: 137 EQLNKLVNVIKVEDI 151
           +QL+KLV+V++V ++
Sbjct: 61  KQLHKLVDVLRVSEL 75

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 97.4 bits (243), Expect = 1e-25
 Identities = 28/74 (37%), Positives = 46/74 (62%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + ++ +
Sbjct: 2   RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEK 61

Query: 375 LLHKLIDLHEVQDI 388
            LHKL+D+  V ++
Sbjct: 62  QLHKLVDVLRVSEL 75

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  102 bits (256), Expect = 3e-27
 Identities = 30/79 (37%), Positives = 44/79 (55%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
           +E +VERELML+K+        E+  L DIFR  ++D++    TIE+TG   K+    + 
Sbjct: 1   SEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQA 60

Query: 213 LSKFGIKELARTGKIALRR 231
           +    I E+ARTG   L R
Sbjct: 61  VDCNLILEIARTGVSGLSR 79

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLE 439
            + EREL+L+K+      R ++  +A IFR   +DV++   T+E            + ++
Sbjct: 3   GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVD 62

Query: 440 PYGICEVARTGRVALVRES 458
              I E+ARTG   L R  
Sbjct: 63  CNLILEIARTGVSGLSRGE 81

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (251), Expect = 1e-26
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214
            HVERE+ML+K+        E+    +IFR +++D++    T+++ G  GK+ A   ++ 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIR 62

Query: 215 KFG-IKELARTGKIALRR 231
               I E+AR+G + L R
Sbjct: 63  DVAKIVEVARSGVVGLSR 80

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 75.8 bits (187), Expect = 8e-18
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLE 439
              ERE++L+KI  +   R +V    +IFR + +DV+    T++              + 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIR 62

Query: 440 PYG-ICEVARTGRVALVRES 458
               I EVAR+G V L R  
Sbjct: 63  DVAKIVEVARSGVVGLSRGD 82

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 90.1 bits (224), Expect = 7e-23
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
            E  VERE+ LIK+  D     EI  LV+IFR K++D+S     IE+TG   K+ A    
Sbjct: 3   PENRVEREMALIKVRFDEDK-QEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINL 61

Query: 213 LSKFGIKELARTGKIALRR 231
           L +  ++E+ARTG +A+ R
Sbjct: 62  LPQKQVEEIARTGIVAMNR 80

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 13/76 (17%)

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG 442
           ERE+ LIK+  +   ++++  + +IFR + +DVS     +E             LL    
Sbjct: 8   EREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQ 66

Query: 443 ICEVARTGRVALVRES 458
           + E+ARTG VA+ R +
Sbjct: 67  VEEIARTGIVAMNRWN 82

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 11/79 (13%), Positives = 30/79 (37%)

Query: 70  PPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129
           P ++        +     +  G++  +  +FA +G NI +  +  +       I +   E
Sbjct: 2   PEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADE 61

Query: 130 RVLRQVVEQLNKLVNVIKV 148
            V  + ++ +  +   I+ 
Sbjct: 62  DVAEKALQAMKAIPGTIRA 80

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L  +  N PGVL  +  + + +G NI +  +  + + G   I   +   ++   K +Q
Sbjct: 12  RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVI--DIEADEDVAEKALQ 69

Query: 375 LLHKLID 381
            +  +  
Sbjct: 70  AMKAIPG 76

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 67.8 bits (166), Expect = 3e-15
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
               +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +
Sbjct: 2   VAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKD 61

Query: 138 Q 138
            
Sbjct: 62  N 62

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             LS+ + N  G L  VT V+++   N+ +L +      G+     +V   D++   L  
Sbjct: 4   KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKD 61

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   + +   D  G + +I  +    G NI++  +  + +    TI++   + V   V  
Sbjct: 2   QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61

Query: 138 QLNKLVNVIKVEDIS 152
            +   V+  K+E + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L +   + PG L  +  ++   G NIQ+  +    +   + I   +    +    +  
Sbjct: 4   INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRT 61

Query: 375 LLHKLIDLHEVQDIT 389
            +   +D ++++ + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KALFTIVVSGTERVLRQVVEQ 138
           + +   ++ G++  +  + A  G NI      L      +    I          +++E+
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63

Query: 139 LNKLVNVIKVE 149
           +     +I++E
Sbjct: 64  VKTFDYIIEIE 74

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141
           + +   +  G + ++ G  +  G  IE +    N + A   I  S  ++   +V+++   
Sbjct: 2   VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKC-IEVLKEKK- 59

Query: 142 LVNVIKVEDI 151
            V+++   D+
Sbjct: 60  -VDLLAASDL 68

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   I+    D  GI N +  +  + G NI    + +   +    +++SG+   + +V  
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVET 63

Query: 138 QLNKLVN----VIKVEDISNEPH 156
            L  L      +  ++  S   H
Sbjct: 64  TLPLLGQQHDLITMMKRTSPHDH 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	472
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.98
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.98
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.97
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.96
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.96
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.95
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.92
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.91
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.91
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.76
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.75
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.74
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.59
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.57
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.14
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	99.12
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.08
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	99.01
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.56
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.52
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.23
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.17
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.16
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.06
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.03
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.91
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.58
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.53
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.92
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.85
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.67
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.21
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	95.45
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.4
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.19
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	94.16
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.81
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	92.89
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.24
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.18
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	90.93
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	89.06
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	88.45
d2nzca1	80	Hypothetical protein TM1266 {Thermotoga maritima [	87.66
d2qswa1	90	Methionine import ATP-binding protein MetN2 {Enter	86.37
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	85.77
d2qrra1	97	Methionine import ATP-binding protein MetN {Vibrio	85.11
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	84.41
d2nzca1	80	Hypothetical protein TM1266 {Thermotoga maritima [	83.11
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	82.46
d2joqa1	86	Hypothetical protein HP0495 {Helicobacter pylori [	81.43
d1gtda_	82	PurS subunit of FGAM synthetase {Archaeon Methanob	81.01

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.98  E-value=4.8e-33  Score=226.50  Aligned_cols=77  Identities=40%  Similarity=0.673  Sum_probs=75.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      |+|||+++|+|+||||+||+|+|+||||||+||+||+||++++||||||+.||++.++|++|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=1.1e-32  Score=224.83  Aligned_cols=78  Identities=40%  Similarity=0.695  Sum_probs=76.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      |++|+||++|+|+||||+||+|+|+||||||+||+||+||++++||||||++||++.++|++|||+||+||++|.|++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999985

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.5e-32  Score=218.90  Aligned_cols=75  Identities=37%  Similarity=0.649  Sum_probs=74.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      ||||+++|+|+||||+||+|+|+||||||+||+|||||++++||||||+.||++.++|++|||+||+||++|.|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999997

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.96  E-value=6e-30  Score=208.12  Aligned_cols=75  Identities=45%  Similarity=0.810  Sum_probs=73.1

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      |+|+|+++|+|+||||+||+|+|+||||||+||+||+||++++  |||++.|+++.++|++|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            7899999999999999999999999999999999999999985  99999999999999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.2e-29  Score=206.83  Aligned_cols=76  Identities=37%  Similarity=0.713  Sum_probs=73.8

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      |++|+|+++|+|+||||+||+|+|+||||||+||+||+||++++  |||+++||++.++|++|||+||+||++|+|++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            68999999999999999999999999999999999999999985  99999999999999999999999999999985

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.5e-29  Score=200.54  Aligned_cols=73  Identities=47%  Similarity=0.794  Sum_probs=71.4

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      ||||+++|+|+||||+||+|+|+||||||+||+||+||++++  |||++.|+++.++|++|||+||+||++|.|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            799999999999999999999999999999999999999985  9999999999999999999999999999997

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.92  E-value=7.8e-26  Score=186.46  Aligned_cols=83  Identities=36%  Similarity=0.449  Sum_probs=80.0

Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 012043          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (472)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~  233 (472)
                      +++|+|||+||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||.+||+||+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei~RSG~vai~rg~   81 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEEEecCHhhhhcCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 012043          234 LGD  236 (472)
Q Consensus       234 ~~~  236 (472)
                      +.+
T Consensus        82 ~~l   84 (86)
T d2pc6a1          82 RVL   84 (86)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            654

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2e-25  Score=183.04  Aligned_cols=80  Identities=41%  Similarity=0.571  Sum_probs=76.9

Q ss_pred             CchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 012043          153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (472)
Q Consensus       153 ~~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg  232 (472)
                      ++++|+|||||+||+++ ++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||++||.||
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~EivRSG~vai~rG   81 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW   81 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEEEEecCceeEecC
Confidence            46789999999999986 57999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 012043          233 K  233 (472)
Q Consensus       233 ~  233 (472)
                      +
T Consensus        82 ~   82 (83)
T d2fgca1          82 N   82 (83)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.9e-25  Score=184.23  Aligned_cols=82  Identities=30%  Similarity=0.524  Sum_probs=79.3

Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecC
Q 012043          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRRE  232 (472)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG-IlEvaRTG~iAl~Rg  232 (472)
                      .++|+||||||||++++++|.+|.++++.|+|+|||+++++++||+||+++|||+|++.|+||| |+|++|||.+||.||
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~EivRSG~iai~rg   81 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEEST
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEEEEcCCHhhhhcc
Confidence            4789999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             cCC
Q 012043          233 KLG  235 (472)
Q Consensus       233 ~~~  235 (472)
                      ++.
T Consensus        82 ~~~   84 (86)
T d2f1fa2          82 DKI   84 (86)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            764

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.76  E-value=7.6e-20  Score=150.36  Aligned_cols=69  Identities=33%  Similarity=0.501  Sum_probs=66.7

Q ss_pred             chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCC
Q 012043          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRES  458 (472)
Q Consensus       391 ~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~  458 (472)
                      +++|+|||+||||++++++|.+|+++++.|+|+|+|++++++++|            ++|+||||+|++|||.+||+||+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei~RSG~vai~rg~   81 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEEEecCHhhhhcCc
Confidence            578999999999999999999999999999999999999999999            99999999999999999999997


Q ss_pred             C
Q 012043          459 G  459 (472)
Q Consensus       459 ~  459 (472)
                      .
T Consensus        82 ~   82 (86)
T d2pc6a1          82 R   82 (86)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.9e-19  Score=147.26  Aligned_cols=68  Identities=34%  Similarity=0.525  Sum_probs=64.4

Q ss_pred             CchHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecC
Q 012043          390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRE  457 (472)
Q Consensus       390 ~~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg  457 (472)
                      ++++|+|||+|+||+++ ++|.+|+++++.|+|+|||++++++++|            ++|+||||+|++|||++||+||
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~EivRSG~vai~rG   81 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW   81 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEEEEecCceeEecC
Confidence            46789999999999986 5799999999999999999999999999            9999999999999999999999


Q ss_pred             C
Q 012043          458 S  458 (472)
Q Consensus       458 ~  458 (472)
                      +
T Consensus        82 ~   82 (83)
T d2fgca1          82 N   82 (83)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2e-19  Score=147.87  Aligned_cols=69  Identities=33%  Similarity=0.478  Sum_probs=66.4

Q ss_pred             chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCC-cEEEeecceeeeecC
Q 012043          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG-ICEVARTGRVALVRE  457 (472)
Q Consensus       391 ~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyG-I~EvaRTG~vAl~Rg  457 (472)
                      .++|+||||||||++++.+|.+|+++++.|+|+|+|++++++++|            ++|+||| |+|++|||.+||+||
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~EivRSG~iai~rg   81 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEEST
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEEEEcCCHhhhhcc
Confidence            478999999999999999999999999999999999999999999            8999998 999999999999999


Q ss_pred             CC
Q 012043          458 SG  459 (472)
Q Consensus       458 ~~  459 (472)
                      +.
T Consensus        82 ~~   83 (86)
T d2f1fa2          82 DK   83 (86)
T ss_dssp             TC
T ss_pred             cc
Confidence            86

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.59  E-value=7.2e-16  Score=122.23  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=53.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHH
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL  375 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQ  375 (472)
                      |+.+.|||+++|+||+|+||+++|++|||||+||++++|++++++||  +++..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Ri--iv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE--EESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEE--EECChHHHHHHHHHC
Confidence            67899999999999999999999999999999999999999999997  455455555554443

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.57  E-value=1.9e-15  Score=119.76  Aligned_cols=62  Identities=19%  Similarity=0.445  Sum_probs=55.9

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHH
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ  138 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQ  138 (472)
                      |+.++|||+++|+||+|+||+++|++|||||+||++++|++++++.++++..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECChHHHHHHHHHC
Confidence            67899999999999999999999999999999999999999999999998767666655544

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.3e-10  Score=93.54  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=66.5

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl  151 (472)
                      .|.|.+.-+|+||+|++|+++|+++|+||.++.++...+.+...++++.|+...++++++|.++..|++|..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            4789999999999999999999999999999999988877776677788889999999999999999999754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=5.1e-11  Score=94.96  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (472)
Q Consensus       315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt  389 (472)
                      |.|.+..+|+||+|++|+++|+++|+||.++.+++.+..+...|.+.+++  ..-++++++|+++.+|++|+.++
T Consensus         4 ~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~--~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           4 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCC--CccHHHHHHHHcCCCeEEEEEEe
Confidence            88999999999999999999999999999999999999999999999854  46789999999999999998653

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.9e-10  Score=91.39  Aligned_cols=73  Identities=16%  Similarity=0.307  Sum_probs=64.9

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl  388 (472)
                      .|.|.+.-+|+||||++|+++|+++|+||.++.++...+.++  ..++++.|++..++++++|+++.+|++|+.+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~--a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY--VVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE--EEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE--EEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            489999999999999999999999999999999998765554  4566677889999999999999999999764

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=2.4e-10  Score=91.01  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt  152 (472)
                      -|.|.+..+|+||+|++|+++|+++|+||.++.++..+..+.  +.|.+  |...-++++++|+++.+|++|..++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CCCccHHHHHHHHcCCCeEEEEEEe
Confidence            478999999999999999999999999999999998887774  55555  5567789999999999999998653

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.56  E-value=6.1e-08  Score=76.71  Aligned_cols=72  Identities=18%  Similarity=0.177  Sum_probs=58.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d  387 (472)
                      -|.+.++|+||+|+.|+++|+..|.||.+++.....+ ..-..|+|-+...+..++.|+.+|+++-+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            5899999999999999999999999999999875443 56678888888655469999999999999999974

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.52  E-value=8.6e-08  Score=75.82  Aligned_cols=70  Identities=14%  Similarity=0.235  Sum_probs=55.6

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC---cEEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---ALFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~---~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d  150 (472)
                      -|.+.++|+||+|+.|+++|+..|.||.+++.....+.   ..++|-+...+..++.++.+|.++-.|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            48899999999999999999999999999997654332   24888887655459999999999999999974

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.23  E-value=1.7e-06  Score=68.91  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=57.0

Q ss_pred             ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCc
Q 012043           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV  143 (472)
Q Consensus        77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLv  143 (472)
                      .++++|+++-.|+||++++|+++++++|.||..+.....++.-.+.+.+.+++..++++.+.|++|-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            3578999999999999999999999999999988877665544467778888888999999998774

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.17  E-value=1.7e-06  Score=67.41  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHH
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLR  133 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ie  133 (472)
                      .|+|.++|+||.|++++.+|+..|+||+++.+..+.+.+.+.+.++..++..+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~   53 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIE   53 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHH
Confidence            48999999999999999999999999999999998877778888874343333

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.16  E-value=1.5e-06  Score=68.53  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hhhHHHHHHHHhcCceeeE
Q 012043           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVIK  147 (472)
Q Consensus        78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-d~~ieQI~kQL~KLvdVik  147 (472)
                      ||++|++.-.|+||+++.|+++++.+|.||..++.....+.-.+.+.++.+ +..++++.++|+++-+-..
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~la~~l~   71 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN   71 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            679999999999999999999999999999999876543222255555532 3358889999977655433

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.06  E-value=5.4e-06  Score=65.85  Aligned_cols=66  Identities=17%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLi  380 (472)
                      +.++|++...|+||++++|+++++++|.||..+.....  .+...+.+.+.+++..++++.+.|++|-
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE--CCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            35799999999999999999999999999988776554  5667788888888888999999998873

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.03  E-value=5.8e-06  Score=64.96  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=53.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccc
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLID  381 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLid  381 (472)
                      ||++|++.-.|+||+++.||++++.+|.||..++....  .+.-.|.+.+.. ++..++++.++|+++-+
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~la~   68 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAFGQ   68 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEecCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999987654  355566666653 23357888888876644

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.91  E-value=1.5e-05  Score=61.87  Aligned_cols=57  Identities=16%  Similarity=0.186  Sum_probs=44.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHH
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL  375 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQ  375 (472)
                      +|+|.++|+||-|.+++.+|+..|+||+++.+..+.+.+  -+.+.++ |.+...++.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~--~~vl~vd-d~~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVA--NVVIRPS-NMDKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEE--EEEEEES-CHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcE--EEEEEEC-CHHHHHHHHHH
Confidence            589999999999999999999999999999998886544  4555565 55544444443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.58  E-value=8.2e-05  Score=59.63  Aligned_cols=67  Identities=12%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC------CCCeEEEEEEEeC-ChHHHHHHHHHHhcccce
Q 012043          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE------KEGLSCITTVVPG-TDESIGKLVQLLHKLIDL  382 (472)
Q Consensus       316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te------~~~iSRiTIVv~g-de~~ieQIvkQL~KLidV  382 (472)
                      .+.|...|+||++.+||++|+.||.||+.|....-.      ..+.-.|.+++.. ..-.++++.++|+.|-+-
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~   81 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTA   81 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHH
Confidence            445568999999999999999999999999864321      2344556565552 334577888887776543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.53  E-value=6.3e-05  Score=60.33  Aligned_cols=68  Identities=21%  Similarity=0.285  Sum_probs=48.5

Q ss_pred             EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC----C--CcE--EEEEEeC-ChhhHHHHHHHHhcCceeeEE
Q 012043           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----D--KAL--FTIVVSG-TERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d--~~~--iTIVV~g-dd~~ieQI~kQL~KLvdVikV  148 (472)
                      .+.|...|+||++++|+++|+.||.||+.|....-.    +  .++  |.++++. .+..++++.+.|+.|-+-+.|
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l~v   84 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDV   84 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHcee
Confidence            455669999999999999999999999999864321    1  123  5555542 345578888888877665444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.92  E-value=0.0019  Score=50.66  Aligned_cols=67  Identities=18%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             EEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEE
Q 012043          319 MLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       319 ilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V  385 (472)
                      .-+.|+||.|.++.+.|+.+|+|+.+|.--|... +.-..+-+-++| .++.+++++++|++.-.-+++
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            3357999999999999999999999999888654 566777777876 345689999999987555444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.85  E-value=0.0029  Score=49.63  Aligned_cols=65  Identities=14%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             EEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeCC-hhhHHHHHHHHhcCceeeEE
Q 012043           84 VFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSGT-ERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        84 IlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~gd-d~~ieQI~kQL~KLvdVikV  148 (472)
                      .-.+|+||.|.++.+.|+.+|+|+.+|---|.... + . +=|-++|. ++.++++.++|++.-.-+++
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            34579999999999999999999999988876644 2 3 55556663 44688999999887655444

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.67  E-value=0.003  Score=51.36  Aligned_cols=74  Identities=14%  Similarity=0.202  Sum_probs=57.6

Q ss_pred             CCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 012043          307 EDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI  380 (472)
Q Consensus       307 ~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd-e~~ieQIvkQL~KLi  380 (472)
                      +.+++-.+-.|.+.+.|+||.|..+...|+++|+|+..|.--|+-. +.-..+-|=++|. ++.++++++.|++-+
T Consensus         9 ~~~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~~   84 (97)
T d1phza1           9 DNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             CCCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHhh
Confidence            3345556788999999999999999999999999999998888654 3455566656664 456888888887654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.007  Score=49.13  Aligned_cols=68  Identities=12%  Similarity=0.222  Sum_probs=51.1

Q ss_pred             cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhhHHHHHHHHhcCc
Q 012043           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV  143 (472)
Q Consensus        76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-d~~ieQI~kQL~KLv  143 (472)
                      +..+-.|.+.+.|+||.|.++...|+++|+|+..|.--|.....  + +-|-++|. +..+.++++.|.+-+
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~~   84 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHhh
Confidence            34466888889999999999999999999999999888865442  2 44445564 445777777776543

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.45  E-value=0.0095  Score=45.08  Aligned_cols=51  Identities=25%  Similarity=0.390  Sum_probs=42.7

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      .++||++.|+.+.++..|+||+-++.|.+|    .+|+++|+.  +..++.++-|++
T Consensus        12 ~~~~gi~arif~~L~~~~InV~mIsq~~Se----~~Is~~V~~--~d~~~Av~~Lh~   62 (67)
T d2hmfa2          12 RGAKGIAGKIFTAVSESGANIKMIAQGSSE----VNISFVIDE--KDLLNCVRKLHE   62 (67)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCCCEEEESSCS----SEEEEEEEG--GGHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHcCCChHHeeecCcc----ceEEEEEeH--HHHHHHHHHHHH
Confidence            689999999999999999999999998776    469999984  456666666654

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.40  E-value=0.023  Score=45.86  Aligned_cols=58  Identities=16%  Similarity=0.288  Sum_probs=44.9

Q ss_pred             EEEEE---EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043          316 TLSML---VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (472)
Q Consensus       316 tLSil---VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL  379 (472)
                      .|++.   ..++||+++|+...+++.|+||+-++.+.+|.    .|+++|+.+  ..++.++-|++.
T Consensus        17 ~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~----~Isf~V~~~--d~~~a~~~L~~~   77 (100)
T d2hmfa3          17 LINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET----NISLVVSEE--DVDKALKALKRE   77 (100)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC----CEEEEECST--THHHHHHHHHHH
T ss_pred             EEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc----eEEEEEeHH--HHHHHHHHHHHH
Confidence            45553   37999999999999999999999999887764    588999865  455555555544

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.19  E-value=0.05  Score=40.94  Aligned_cols=51  Identities=24%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHh
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~  140 (472)
                      ..++||+++|+.+.++..|+||+-++.+.+|  -.++++|+.+  ..++.++.|+
T Consensus        11 m~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~~--d~~~Av~~Lh   61 (67)
T d2hmfa2          11 MRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDEK--DLLNCVRKLH   61 (67)
T ss_dssp             TTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEGG--GHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeHH--HHHHHHHHHH
Confidence            4699999999999999999999999988654  3488888743  3455555554

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.16  E-value=0.025  Score=43.62  Aligned_cols=51  Identities=25%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH  377 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~  377 (472)
                      ..++||++.|+.+.++..|+||+=++-|.+|    ..|+++|+  ++..++.++-|+
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se----~~Is~vV~--~~d~~~Av~~Lh   60 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK----VNISFIVN--EAEAEGCVQALH   60 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC----SEEEEEEE--HHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc----eEEEEEEe--HHHHHHHHHHHH
Confidence            3689999999999999999999999998876    45999998  445666666664

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.81  E-value=0.052  Score=43.08  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=39.7

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--------HHHHHHHHHHhcc
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--------ESIGKLVQLLHKL  379 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--------~~ieQIvkQL~KL  379 (472)
                      .++||+++||...|++.|+||+-|+.++.      .|+++++.++        ..++++.+.|+++
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~Se~------~is~~v~~~~~~~a~~~~~~~~~~~~el~~i   83 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATSEV------SISLTLDPSKLWSRELIQQELDHVVEELEKI   83 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEETT------EEEEEECCGGGSSSCCCHHHHHHHHHHHTTT
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecCC------eEEEEEchhHHHHHHHHHHHHHHHHHHHhCC
Confidence            48999999999999999999999985422      6888987542        2355666666544

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=92.89  E-value=0.075  Score=42.70  Aligned_cols=58  Identities=21%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             EEEEE---EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcC
Q 012043           81 TISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (472)
Q Consensus        81 tISIl---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KL  142 (472)
                      .|++.   ..++||+++|+.+.|++.|+||+-++.+.++.  -++++|+.++  .++.++.|++.
T Consensus        17 ~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d--~~~a~~~L~~~   77 (100)
T d2hmfa3          17 LINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEED--VDKALKALKRE   77 (100)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTT--HHHHHHHHHHH
T ss_pred             EEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHH--HHHHHHHHHHH
Confidence            45553   37999999999999999999999999776543  3888887543  44444545443

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.24  E-value=0.18  Score=39.83  Aligned_cols=38  Identities=11%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 012043           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (472)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd  128 (472)
                      .++||+++||...|++.|+||+-++.++    .-++++++.+
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~Se----~~is~~v~~~   61 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATSE----VSISLTLDPS   61 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEET----TEEEEEECCG
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecC----CeEEEEEchh
Confidence            5899999999999999999999998532    2477777644

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.18  E-value=0.063  Score=41.31  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=38.7

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHH
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL  139 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL  139 (472)
                      ..++||+++|+.+.++..|+||+-++-|.++  --|+++|+.+  ..+..++.|
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se--~~Is~vV~~~--d~~~Av~~L   59 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK--VNISFIVNEA--EAEGCVQAL   59 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC--SEEEEEEEHH--HHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc--eEEEEEEeHH--HHHHHHHHH
Confidence            4689999999999999999999999988654  2488888743  344444444

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.78  Score=35.48  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      ..|.+.+...|.++..+.|..++.+..-+-++++.-++-...+-.+|+.+. .+++.+..|=+.|.+.-.|.-|
T Consensus        13 c~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k~Ss~GkY~Svtv~i~~~s~eqv~~iY~~l~~~~~Vkmv   86 (87)
T d1rwua_          13 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV   86 (87)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCcEEEEEEECChhHHHHHHHHHHHhCCCCCcceeecCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            469999999999999999999999877677888889999999999999988 5788999999999998887654

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.07  Score=42.25  Aligned_cols=56  Identities=18%  Similarity=0.312  Sum_probs=41.0

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHH-------HHHHHHHHhcccce
Q 012043          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES-------IGKLVQLLHKLIDL  382 (472)
Q Consensus       321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~-------ieQIvkQL~KLidV  382 (472)
                      ..++||+++||.+.|++.|+||+-++-+  |    .+|+++++..+..       .+.+.+.|+|+-+|
T Consensus        24 m~~~~G~~~~if~~L~~~~Inv~mis~S--e----~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~V   86 (91)
T d2j0wa2          24 MLHSRGFLAEVFGILARHNISVDLITTS--E----VSVALTLDTTGSTSTGDTLLTQSLLMELSALCRV   86 (91)
T ss_dssp             CSCHHHHHHHHTTTTTTTTCCCSEEEEE--T----TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCE
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEEcc--C----cEEEEEEchhHHHHHHHHHHHHHHHHHHhccCcE
Confidence            3568999999999999999999999843  2    4788999854321       24556666665444

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.45  E-value=0.48  Score=37.35  Aligned_cols=64  Identities=17%  Similarity=0.234  Sum_probs=50.3

Q ss_pred             eeEEEeCC--CCCHHHHHHHHHhcC-------cEEEEecC---CEEEEEEeC-ChhHHHHHHHHhccCCc-EEEeecc
Q 012043          162 MLIKLNGD--TSTWPEIMWLVDIFR-------AKVVDISE---HALTIEVTG-DPGKMVAVQRNLSKFGI-KELARTG  225 (472)
Q Consensus       162 aLIKV~~~--~~~r~eI~~l~~~Fr-------AkIVDvs~---~sl~iE~TG-~~~KIdafi~~L~~fGI-lEvaRTG  225 (472)
                      .++|+...  ..+.+-|-++++.|+       |+|=.+..   ..++++++| +++++++.++.|+..|+ +|+.+-|
T Consensus        18 ~lvrL~F~G~~a~~Pvis~l~r~~~v~vnIL~g~I~~i~~~~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          18 YIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             eEEEEEEeCCccCchHHHHHHHHhCCceEEEEEEeEEeCCeeEEEEEEEEecCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            36777654  456778999999987       44445555   679999999 78889999999999996 6888766

>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: TM1266-like
domain: Hypothetical protein TM1266
species: Thermotoga maritima [TaxId: 2336]

Probab=87.66  E-value=1.3  Score=34.61  Aligned_cols=69  Identities=20%  Similarity=0.319  Sum_probs=61.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee-ecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 012043          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH  383 (472)
Q Consensus       314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg-~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi  383 (472)
                      -+++++.|+|+--.-.+|-.++++.|-.|-. -+| |....+++=|.++++|+.+.+..+...|.+|-.|-
T Consensus         4 i~vigIive~r~~~a~kVn~iL~~yg~~I~g-RmGip~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~   73 (80)
T d2nzca1           4 FYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   73 (80)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             EEEEEEEEeChHHhHHHHHHHHHHCCCEEEE-eccCCccccCceEEEEEEECCHHHHHHHHHhhcCCCCEE
Confidence            3789999999999999999999999999887 555 66678999999999999999999999999987763

>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.37  E-value=1.1  Score=34.81  Aligned_cols=60  Identities=20%  Similarity=0.383  Sum_probs=47.2

Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCcEE-------EEecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 012043          163 LIKLNG--DTSTWPEIMWLVDIFRAKV-------VDISE---HALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (472)
Q Consensus       163 LIKV~~--~~~~r~eI~~l~~~FrAkI-------VDvs~---~sl~iE~TG~~~KIdafi~~L~~fGI-lEva  222 (472)
                      ++|+..  +..+.+-|-++++.|+-.+       =++..   ..+++|++|+++++++.++.|+..|+ +|+.
T Consensus        15 lvrl~f~g~~a~~Pvis~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~~~v~vEvi   87 (90)
T d2qswa1          15 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   87 (90)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCccCccHHHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEe
Confidence            566654  4467778999999998544       44444   68999999999999999999999997 5653

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=85.77  E-value=0.33  Score=35.82  Aligned_cols=49  Identities=33%  Similarity=0.530  Sum_probs=38.3

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (472)
Q Consensus       322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K  378 (472)
                      .++||+.+|+...++.  +||+=++.+.+|.    +|+++|+.  +..++.++.|++
T Consensus        12 ~~~~gi~arif~~L~~--~nI~~i~~~~Se~----~is~vV~~--~d~~~Av~aLh~   60 (64)
T d2j0wa3          12 SKACGVGKEVFGVLEP--FNIRMICYGASSH----NLCFLVPG--EDAEQVVQKLHS   60 (64)
T ss_dssp             TTSSSHHHHHHSSCTT--SCCCEEEESSCTT----EEEEEEEG--GGHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHhh--CCCeEEEEEcCcc----EEEEEEcH--HHHHHHHHHHHH
Confidence            4899999999999974  7777777777665    78999984  466777777664

>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=85.11  E-value=0.88  Score=35.79  Aligned_cols=60  Identities=13%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             eeEEEeCCC--CCHHHHHHHHHhcCcEE------E-EecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 012043          162 MLIKLNGDT--STWPEIMWLVDIFRAKV------V-DISE---HALTIEVTGDPGKMVAVQRNLSKFGI-KEL  221 (472)
Q Consensus       162 aLIKV~~~~--~~r~eI~~l~~~FrAkI------V-Dvs~---~sl~iE~TG~~~KIdafi~~L~~fGI-lEv  221 (472)
                      .++|+....  .+.+-|-++++.|+..+      | ++..   .+++++++|+++++++.++.|+..|+ +|+
T Consensus        20 ~llrl~f~g~~a~~Pvis~l~~~~~i~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~~~i~vEv   92 (97)
T d2qrra1          20 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEV   92 (97)
T ss_dssp             EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEEeCCCcCchHHHHHHHHHCCCeEEEEEeeEEeCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCeEEE
Confidence            588887654  56667999999998765      2 2332   66999999999999999999999996 454

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=0.21  Score=39.37  Aligned_cols=55  Identities=13%  Similarity=0.331  Sum_probs=38.6

Q ss_pred             EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--h-----HHHHHHHHhcCce
Q 012043           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--V-----LRQVVEQLNKLVN  144 (472)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~--~-----ieQI~kQL~KLvd  144 (472)
                      ..++||+++||.+.|++.|+||+-++.+    +.-++++++..+.  .     .+.+.+.|+|+-+
T Consensus        24 m~~~~G~~~~if~~L~~~~Inv~mis~S----e~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~   85 (91)
T d2j0wa2          24 MLHSRGFLAEVFGILARHNISVDLITTS----EVSVALTLDTTGSTSTGDTLLTQSLLMELSALCR   85 (91)
T ss_dssp             CSCHHHHHHHHTTTTTTTTCCCSEEEEE----TTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEEcc----CcEEEEEEchhHHHHHHHHHHHHHHHHHHhccCc
Confidence            4578999999999999999999999842    2357888874332  1     2445555655433

>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: TM1266-like
domain: Hypothetical protein TM1266
species: Thermotoga maritima [TaxId: 2336]

Probab=83.11  E-value=2.3  Score=33.15  Aligned_cols=67  Identities=10%  Similarity=0.121  Sum_probs=55.5

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhhHHHHHHHHhcCcee
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNV  145 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gdd~~ieQI~kQL~KLvdV  145 (472)
                      -+.+++.++|+--.-.+|=.++++.|-.|-.=.-=|-.+.  ++|.++++|+.+.+..+...|.+|-.|
T Consensus         4 i~vigIive~r~~~a~kVn~iL~~yg~~I~gRmGip~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV   72 (80)
T d2nzca1           4 FYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGV   72 (80)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTE
T ss_pred             EEEEEEEEeChHHhHHHHHHHHHHCCCEEEEeccCCccccCceEEEEEEECCHHHHHHHHHhhcCCCCE
Confidence            4689999999998889999999999998875433344444  459999999999999999999998766

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=82.46  E-value=3.7  Score=31.39  Aligned_cols=70  Identities=16%  Similarity=0.141  Sum_probs=56.0

Q ss_pred             EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEE
Q 012043           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (472)
Q Consensus        79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV  148 (472)
                      .|.+.+...|.++..+.|..++.+..-+-++++.-++.....  +|+.+. .+++.+..|-+.|.+.-.|.-|
T Consensus        14 ~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k~Ss~GkY~Svtv~i~~~s~eqv~~iY~~l~~~~~Vkmv   86 (87)
T d1rwua_          14 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV   86 (87)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CcEEEEEEECChhHHHHHHHHHHHhCCCCCcceeecCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            589999999999999999999998766777777777765555  566554 4577899999999988777644

>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: HP0495-like
domain: Hypothetical protein HP0495
species: Helicobacter pylori [TaxId: 210]

Probab=81.43  E-value=6.3  Score=29.89  Aligned_cols=72  Identities=4%  Similarity=0.029  Sum_probs=63.1

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (472)
Q Consensus       312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V  385 (472)
                      ...|.+.+...+.++.+.++...|..|.+.++.-  -++....+-.+|+.+. .++++++.|=+.|.+.-.|+-|
T Consensus        13 Pc~y~~KvIg~~~~~~~~~~~~~~~~~~~~~~~~--k~Ss~GkY~Svtv~v~v~s~~ql~~iY~~L~~~~~Vimv   85 (86)
T d2joqa1          13 PCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFK--NTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             SEEEEEEEEESCSCCCHHHHHHHTTTCCEEEEEE--EECTTSCCEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred             CcccEEEEEEecCcccceeeEEEEeccCCCCCcc--ccCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            3679999999999999999999999999887642  5678889999999988 5788999999999999999865

>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: PurS-like
superfamily: PurS-like
family: PurS subunit of FGAM synthetase
domain: PurS subunit of FGAM synthetase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.01  E-value=1.3  Score=34.43  Aligned_cols=46  Identities=20%  Similarity=0.343  Sum_probs=37.1

Q ss_pred             EEEEEEEEcCcchHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 012043           79 RHTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (472)
Q Consensus        79 ~htISIlVeN~pGVL~----RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd  129 (472)
                      +|.+.|.|..+||||.    -|..-+.+.||+++++.+|.     ++.+.+++++
T Consensus         1 kf~v~V~V~lK~gVlDPqG~ai~~aL~~lG~~v~~Vr~gK-----~~~l~i~~~~   50 (82)
T d1gtda_           1 KFMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-----VITFTMDEDS   50 (82)
T ss_dssp             CEEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-----EEEEEECCSC
T ss_pred             CeEEEEEEEECCCCcCcHHHHHHHHHHHcCCCcceEEEEE-----EEEEEEcCCC
Confidence            5788999999999985    56777888999999988874     5777777543