Citrus Sinensis ID: 012071

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMKFT
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccc
cccEEccccccccccccccccccccccccccccccccccEEccccccccccccHcccccccccccccEEccccccccccEcccccccHHHccccccccccccccEEcccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHcccccHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
matynpslsyqrecfstpvpgdnkfsncldptsshpdnvnmyvnpassTELYSEILsvgsslsprncvevpstggtngkmfipstsdavvlpsidgqlnagtgnvilttqpsvldgeqnfqcqglslslstqmtsavsvpsfqhqysnprfssflrthlsvpgkgtmpcqdnenetskelrssegmlpgfqteppfntqcsighnemhsgtyqyepigfnstILKSKHLKAAQQLLDEAVNIQKAlklpnsnkndaketdgrsssmlpafhgilsnptesvsnssselSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSfdmvaghgaakSYTVLALQTISRHFRSLRDAISDQIQVTGRslgeqetssngqasiprlrfvdHQSRQQRALQQLGVmrhawrpqrglpessVSILRAWLFEhflhpypndseKIMLAKQTGLSKNQVRKIEILLLELWIMKFT
matynpslsyqreCFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQkalklpnsnkndaKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTgrslgeqetssngqasiprlrFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKqtglsknqvrKIEILLLELWIMKFT
MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGIlsnptesvsnssselsHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMKFT
******************************************************IL***********************MFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSL**************************************************************************IGH*EMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNI************************************************************LLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAIS*****************************************LGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMK**
*ATYN*S***********************************************************************************************************************************************************************************************************************ILKSKHLKAAQQLLDEAVNIQKA********************************************************KLLSMLEEVDRGYKQYYHQMQIVASSFDMVAG**AAKSYTVLALQTISRHFRSLRDAI************************************************************VSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMKF*
MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMP**************SEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNS************SSMLPAFHGILSN****************RQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVT*************QASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMKFT
**************FSTP**GDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLS*P**********************************************SGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKA********************************************HAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLG************PRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMKFT
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMKFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query471 2.2.26 [Sep-21-2011]
Q9FWS9 524 BEL1-like homeodomain pro yes no 0.764 0.687 0.483 2e-83
Q9SIW1 482 BEL1-like homeodomain pro no no 0.486 0.475 0.596 2e-75
Q9FXG8 538 BEL1-like homeodomain pro no no 0.768 0.672 0.468 8e-75
O65685 532 BEL1-like homeodomain pro no no 0.486 0.430 0.584 1e-70
Q9SJ56 680 BEL1-like homeodomain pro no no 0.522 0.361 0.509 7e-60
Q94KL5 627 BEL1-like homeodomain pro no no 0.507 0.381 0.456 2e-51
Q9SW80 739 BEL1-like homeodomain pro no no 0.505 0.322 0.438 6e-51
Q1PFD1290 BEL1-like homeodomain pro no no 0.513 0.834 0.417 5e-42
Q38897 611 Homeobox protein BEL1 hom no no 0.371 0.286 0.494 9e-42
Q8S897 431 BEL1-like homeodomain pro no no 0.403 0.440 0.448 2e-41
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 195/403 (48%), Positives = 240/403 (59%), Gaps = 43/403 (10%)

Query: 69  EVPSTGGTNGKM-FIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSL 127
           E+ S    N +M FIP TSD  V            GNV +++       + +F   GLSL
Sbjct: 41  EIVSGDVRNNEMVFIPPTSDVAV-----------NGNVTVSS------NDLSFHGGGLSL 83

Query: 128 SLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQD-NENETSKELRSSEGM 186
           SL  Q+ SAVSV  FQ+ Y N      L   LS          D N    S     S+ +
Sbjct: 84  SLGNQIQSAVSVSPFQYHYQN------LSNQLSYNNLNPSTMSDENGKSLSVHQHHSDQI 137

Query: 187 LPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKAL 246
           LP        N              Y+YE  GF S++L+S++LK  QQLLDE V+++K L
Sbjct: 138 LPSSVYNNNGNNGVGF------YNNYRYETSGFVSSVLRSRYLKPTQQLLDEVVSVRKDL 191

Query: 247 KLPNSNKNDAKETDGRSSSMLPAFH-GILSNPTESVSNSSSELSHAERQELLNKKTKLLS 305
           KL N    + K  D         FH G   N TE   + S ELS +ERQEL +KK+KLL+
Sbjct: 192 KLGNKKMKNDKGQD---------FHNGSSDNITEDDKSQSQELSPSERQELQSKKSKLLT 242

Query: 306 MLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQV 365
           M++EVD+ Y QY+HQM+ +ASSF+MV G GAAK YT +AL  ISRHFR LRDAI +QIQV
Sbjct: 243 MVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQIQV 302

Query: 366 TGRSLGEQETSSNGQASIPRLRFVDHQSRQQRAL-QQLGVMRHAWRPQRGLPESSVSILR 424
               LGE+ETS      IPRLR++D + RQQRAL QQLG++R AWRPQRGLPE+SVSILR
Sbjct: 303 IRGKLGERETSDEQGERIPRLRYLDQRLRQQRALHQQLGMVRPAWRPQRGLPENSVSILR 362

Query: 425 AWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEI-LLLELW 466
           AWLFEHFLHPYP +SEKIML+KQTGLSKNQV    I   + LW
Sbjct: 363 AWLFEHFLHPYPKESEKIMLSKQTGLSKNQVANWFINARVRLW 405
Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q1PFD1|BLH11_ARATH BEL1-like homeodomain protein 11 OS=Arabidopsis thaliana GN=BLH11 PE=2 SV=1 Back     alignment and function description
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
255538762 739 bel1 homeotic protein, putative [Ricinus 0.985 0.627 0.568 1e-135
224066127 704 predicted protein [Populus trichocarpa] 0.983 0.657 0.549 1e-133
356509664 646 PREDICTED: BEL1-like homeodomain protein 0.874 0.637 0.515 1e-102
356551876 636 PREDICTED: BEL1-like homeodomain protein 0.864 0.639 0.509 1e-102
356518012 637 PREDICTED: BEL1-like homeodomain protein 0.861 0.637 0.514 1e-102
357438117 627 BEL1-like homeodomain protein [Medicago 0.855 0.642 0.529 1e-101
356562373 613 PREDICTED: BEL1-like homeodomain protein 0.857 0.659 0.505 1e-101
359492697 698 PREDICTED: BEL1-like homeodomain protein 0.910 0.614 0.509 2e-98
147766088 687 hypothetical protein VITISV_001987 [Viti 0.910 0.624 0.507 1e-97
255543785 677 bel1 homeotic protein, putative [Ricinus 0.923 0.642 0.491 3e-93
>gi|255538762|ref|XP_002510446.1| bel1 homeotic protein, putative [Ricinus communis] gi|223551147|gb|EEF52633.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/489 (56%), Positives = 340/489 (69%), Gaps = 25/489 (5%)

Query: 1   MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGS 60
           MATY   LS QRE   +P PGD K ++  +  S H  N+ +Y+N AS+   YSE LS GS
Sbjct: 1   MATYYAGLSSQRENLQSPYPGDQKLASYSEHPSHH-SNMTVYLNHASAAGSYSEFLS-GS 58

Query: 61  SLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGN-----------VILTT 109
           SLS  NC E PS G  N  +FIP TSD + L SIDG ++   GN           V+  T
Sbjct: 59  SLSSHNCAEFPSVGDRNEMVFIPPTSDTMNLQSIDGHIDTSAGNPVGNPVNGDPQVVSRT 118

Query: 110 QPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPC 169
           Q  +L  + N Q QGLSLSL T+M SA+SVPSFQ+Q  N    SF   HL + GK  + C
Sbjct: 119 QVGILGNDLNAQSQGLSLSLGTEMQSAISVPSFQYQNPNVILPSFSSLHLPILGKWMLSC 178

Query: 170 QDNENETSKELRSSEGMLP-------GFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNST 222
           + +E+  SK L+SSE +L          + E   N QC   H ++H+  Y Y+P  + + 
Sbjct: 179 EGDESNQSKGLKSSECLLTFSGGNHTPIKAEVSRNPQCLDSHRDIHTDAYMYQPSSYANA 238

Query: 223 ILKSKHLKAAQQLLDEAVNIQKALKLPNSNK--NDAKETDGRSS--SMLPAFHGILSNPT 278
           I  SK LKAAQQLLD+ V+++K LK P S+K  ++ KETD +++  S+  +  G+ S P 
Sbjct: 239 ITNSKFLKAAQQLLDKVVSVRKVLKQPPSDKCLDETKETDAKANKQSIPLSSSGMSSGPK 298

Query: 279 ESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAK 338
           ES++NSSSELS AERQ+L NKKTKLLS+L+EVDR Y+QYY+QMQ+V SSFDMVAGHGAAK
Sbjct: 299 ESIANSSSELSPAERQDLQNKKTKLLSILDEVDRRYRQYYNQMQLVVSSFDMVAGHGAAK 358

Query: 339 SYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRA 398
           SYT LALQTISRHFR LRDAIS QI++  +SLGE++TS+NGQ  IPRLR+VD Q RQQRA
Sbjct: 359 SYTALALQTISRHFRCLRDAISSQIEIVRKSLGEEDTSANGQGGIPRLRYVDQQLRQQRA 418

Query: 399 LQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKI 458
           LQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLS+NQV   
Sbjct: 419 LQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSRNQVANW 478

Query: 459 EI-LLLELW 466
            I   + LW
Sbjct: 479 FINARVRLW 487

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066127|ref|XP_002302014.1| predicted protein [Populus trichocarpa] gi|222843740|gb|EEE81287.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509664|ref|XP_003523566.1| PREDICTED: BEL1-like homeodomain protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356551876|ref|XP_003544298.1| PREDICTED: BEL1-like homeodomain protein 10-like [Glycine max] Back     alignment and taxonomy information
>gi|356518012|ref|XP_003527678.1| PREDICTED: BEL1-like homeodomain protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357438117|ref|XP_003589334.1| BEL1-like homeodomain protein [Medicago truncatula] gi|355478382|gb|AES59585.1| BEL1-like homeodomain protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356562373|ref|XP_003549446.1| PREDICTED: BEL1-like homeodomain protein 7-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|359492697|ref|XP_002281021.2| PREDICTED: BEL1-like homeodomain protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147766088|emb|CAN65696.1| hypothetical protein VITISV_001987 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255543785|ref|XP_002512955.1| bel1 homeotic protein, putative [Ricinus communis] gi|223547966|gb|EEF49458.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
TAIR|locus:2018398 524 BLH3 "AT1G75410" [Arabidopsis 0.520 0.467 0.579 1.8e-70
TAIR|locus:2013154 538 BEL10 "AT1G19700" [Arabidopsis 0.734 0.643 0.471 1.1e-69
TAIR|locus:2042609 482 BLH7 "AT2G16400" [Arabidopsis 0.373 0.365 0.698 2.6e-69
TAIR|locus:2139614 532 BLH6 "AT4G34610" [Arabidopsis 0.486 0.430 0.572 4.2e-65
TAIR|locus:2039250 680 BLH1 "AT2G35940" [Arabidopsis 0.777 0.538 0.401 3.3e-56
TAIR|locus:2115000 739 BLH2 "AT4G36870" [Arabidopsis 0.496 0.316 0.460 6.3e-51
TAIR|locus:2049035 627 BLH4 "BEL1-like homeodomain 4" 0.558 0.419 0.418 3.3e-47
TAIR|locus:2177856 611 BEL1 "AT5G41410" [Arabidopsis 0.698 0.538 0.336 1e-43
TAIR|locus:2185183 575 RPL "AT5G02030" [Arabidopsis t 0.333 0.273 0.5 1.3e-40
TAIR|locus:2018457290 BLH11 "BEL1-like homeodomain 1 0.524 0.851 0.393 3.7e-39
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 686 (246.5 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 150/259 (57%), Positives = 182/259 (70%)

Query:   212 YQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNSN-KNDAKETDGRSSSMLPAF 270
             Y+YE  GF S++L+S++LK  QQLLDE V+++K LKL N   KND K  D         F
Sbjct:   157 YRYETSGFVSSVLRSRYLKPTQQLLDEVVSVRKDLKLGNKKMKND-KGQD---------F 206

Query:   271 H-GIXXXXXXXXXXXXXXXXHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFD 329
             H G                  +ERQEL +KK+KLL+M++EVD+ Y QY+HQM+ +ASSF+
Sbjct:   207 HNGSSDNITEDDKSQSQELSPSERQELQSKKSKLLTMVDEVDKRYNQYHHQMEALASSFE 266

Query:   330 MVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFV 389
             MV G GAAK YT +AL  ISRHFR LRDAI +QIQV    LGE+ETS      IPRLR++
Sbjct:   267 MVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQIQVIRGKLGERETSDEQGERIPRLRYL 326

Query:   390 DHQSRQQRAL-QQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQT 448
             D + RQQRAL QQLG++R AWRPQRGLPE+SVSILRAWLFEHFLHPYP +SEKIML+KQT
Sbjct:   327 DQRLRQQRALHQQLGMVRPAWRPQRGLPENSVSILRAWLFEHFLHPYPKESEKIMLSKQT 386

Query:   449 GLSKNQVRKIEI-LLLELW 466
             GLSKNQV    I   + LW
Sbjct:   387 GLSKNQVANWFINARVRLW 405
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP
GO:0048513 "organ development" evidence=RCA
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185183 RPL "AT5G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018457 BLH11 "BEL1-like homeodomain 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
pfam07526139 pfam07526, POX, Associated with HOX 4e-58
smart00574140 smart00574, POX, domain associated with HOX domain 4e-48
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 2e-11
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 1e-06
smart0038957 smart00389, HOX, Homeodomain 5e-04
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  187 bits (478), Expect = 4e-58
 Identities = 79/141 (56%), Positives = 98/141 (69%), Gaps = 2/141 (1%)

Query: 221 STILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGILSNPTES 280
           S +  SK+LK AQ+LL+E  ++ K   L + + N A+  +G +SS   +  G  S+  +S
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVGKNKALDDDSSNGAE--NGANSSGASSGDGGGSSAGDS 58

Query: 281 VSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSY 340
             +SS ELS AERQEL  KK KLLSMLEEVDR Y+QYY QMQ+V SSF+ VAG GAAK Y
Sbjct: 59  SDSSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAAKPY 118

Query: 341 TVLALQTISRHFRSLRDAISD 361
           T LALQ +SRHFR LRDAIS 
Sbjct: 119 TALALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 471
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
smart00574140 POX domain associated with HOX domains. 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 100.0
KOG0774334 consensus Transcription factor PBX and related HOX 99.65
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.59
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.27
KOG0775304 consensus Transcription factor SIX and related HOX 99.23
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.19
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.15
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 98.43
KOG0488309 consensus Transcription factor BarH and related HO 98.4
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 98.34
KOG0485 268 consensus Transcription factor NKX-5.1/HMX1, conta 98.24
KOG0487308 consensus Transcription factor Abd-B, contains HOX 98.22
KOG3802398 consensus Transcription factor OCT-1, contains POU 98.22
KOG0489261 consensus Transcription factor zerknullt and relat 98.21
KOG0843197 consensus Transcription factor EMX1 and related HO 98.15
KOG2251 228 consensus Homeobox transcription factor [Transcrip 98.14
KOG0850245 consensus Transcription factor DLX and related pro 98.09
KOG0493342 consensus Transcription factor Engrailed, contains 98.08
KOG0483198 consensus Transcription factor HEX, contains HOX a 98.06
KOG0486 351 consensus Transcription factor PTX1, contains HOX 98.05
KOG0494 332 consensus Transcription factor CHX10 and related H 98.01
COG5576156 Homeodomain-containing transcription factor [Trans 97.82
KOG0492246 consensus Transcription factor MSH, contains HOX d 97.55
KOG0773 342 consensus Transcription factor MEIS1 and related H 97.52
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 97.51
KOG0491194 consensus Transcription factor BSH, contains HOX d 97.28
KOG2252558 consensus CCAAT displacement protein and related h 97.25
KOG0490 235 consensus Transcription factor, contains HOX domai 97.2
KOG0847288 consensus Transcription factor, contains HOX domai 97.04
KOG4577 383 consensus Transcription factor LIM3, contains LIM 96.93
KOG0848317 consensus Transcription factor Caudal, contains HO 96.85
KOG0849 354 consensus Transcription factor PRD and related pro 96.72
KOG0844 408 consensus Transcription factor EVX1, contains HOX 96.64
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 95.64
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 95.05
KOG0490235 consensus Transcription factor, contains HOX domai 91.03
PF0379152 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN 84.27
PF11285283 DUF3086: Protein of unknown function (DUF3086); In 83.1
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information 
Probab=100.00  E-value=1.9e-48  Score=352.16  Aligned_cols=139  Identities=55%  Similarity=0.701  Sum_probs=106.4

Q ss_pred             ccccCCccchHHHHHHHHHHhhhhhcc-CCCCCCCCccccCCCCCCCCCCcCCCCCCCCCCCCCCCccCCHHHHHHHHHH
Q 012071          221 STILKSKHLKAAQQLLDEAVNIQKALK-LPNSNKNDAKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNK  299 (471)
Q Consensus       221 ~~l~~SryLk~aQeLL~E~~~v~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ls~~er~elq~k  299 (471)
                      ++|++|||||||||||||||+|++..+ ......... .. +...+......+..++...+..+..++++++||+|+|+|
T Consensus         1 q~l~~SryLk~aQeLL~E~~~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~e~q~k   78 (140)
T PF07526_consen    1 QVLLGSRYLKPAQELLDEFCSVGGANKKKSDDSSSGA-PG-GANSSGSSSSSGGSSSSSSSSDSSSPELSPAERQELQRK   78 (140)
T ss_pred             CccccchhHHHHHHHHHHHHcccchhhhcchhhcccc-cc-ccccCCCCCCCCCCCCCccccCCCCCCCChhhHHHHHHH
Confidence            479999999999999999999986311 111111111 00 011111111122223333344455689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHHhhhHHHHHHHH
Q 012071          300 KTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISD  361 (471)
Q Consensus       300 k~KLl~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~srhfr~lrd~I~~  361 (471)
                      |+|||+|||||||||||||||||+||+|||+|||+|+|++||+||+||||||||||||+|++
T Consensus        79 K~KLl~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSrhFR~LRdaI~~  140 (140)
T PF07526_consen   79 KAKLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSRHFRCLRDAISD  140 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999974

>smart00574 POX domain associated with HOX domains Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 7e-06
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 1e-05
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 1e-05
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 1e-04
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure 
Iteration: 1

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 412 QRG-LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
           +RG LP+ + +++R+WLF+H  HPYP + EK  +A QT L+  QV
Sbjct: 10  KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQV 54
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 2e-22
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 8e-22
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 2e-21
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 3e-21
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 4e-21
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 1e-19
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 1e-18
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 5e-18
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 6e-18
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 7e-04
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
 Score = 90.2 bits (224), Expect = 2e-22
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
           A R +R   + +  IL  + + H  +PYP++  K  LAK+ G++ +QV
Sbjct: 1   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 48
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.7
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.69
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.66
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.66
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.61
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.6
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.58
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.57
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.56
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.56
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.35
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.35
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.28
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.27
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.27
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.22
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.21
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.21
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.21
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.2
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.2
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.2
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.19
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.19
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.19
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.18
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.17
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.17
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.16
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.16
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.15
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.15
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.14
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.14
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.13
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.13
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.12
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.12
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.12
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.1
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.1
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.09
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.09
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.09
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.08
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.07
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.07
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.07
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.06
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.06
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.06
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.06
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.05
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.04
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.04
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.02
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.02
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.01
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.01
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.01
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 98.99
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 98.98
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 98.97
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 98.95
1e3o_C160 Octamer-binding transcription factor 1; transcript 98.93
2xsd_C164 POU domain, class 3, transcription factor 1; trans 98.93
2e19_A64 Transcription factor 8; homeobox domain, structura 98.92
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 98.88
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 98.86
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 98.82
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 98.79
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 98.78
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.77
1lfb_A99 Liver transcription factor (LFB1); transcription r 98.69
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 98.54
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 98.53
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 98.42
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 93.54
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 90.27
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
Probab=99.70  E-value=7.5e-18  Score=138.21  Aligned_cols=63  Identities=32%  Similarity=0.493  Sum_probs=58.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCCC
Q 012071          409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKFT  471 (471)
Q Consensus       409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i~  471 (471)
                      +|+++.|+++++.+|+.||.+|..||||+.++|+.||.+|||++.||++||+| |+|.++++++
T Consensus         8 rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~   71 (83)
T 2dmn_A            8 KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ   71 (83)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence            34444599999999999999999999999999999999999999999999999 9999998874
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 471
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 2e-12
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 1e-09
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 2e-09
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (145), Expect = 2e-12
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 410 RPQRG-LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVR 456
           + +RG LP+ + +++R+WLF+H  HPYP + EK  +A QT L+  QV 
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.74
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.72
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.66
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.34
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.3
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.26
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.26
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.26
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.25
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.25
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.24
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.23
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.22
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.2
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.2
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.2
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.2
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.19
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.19
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.18
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.18
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.16
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.15
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.14
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.14
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.13
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.13
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.1
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.06
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.04
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.04
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 98.86
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.4e-19  Score=136.68  Aligned_cols=58  Identities=38%  Similarity=0.669  Sum_probs=53.6

Q ss_pred             CCCCC-CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071          410 RPQRG-LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI  467 (471)
Q Consensus       410 r~rRg-lpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K  467 (471)
                      |++|+ ||++++.+|+.||.+|..||||+.+||.+||.+|||+..||.|||+| |+|+.+
T Consensus         3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~lq   62 (62)
T d1x2na1           3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ   62 (62)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcC
Confidence            44454 99999999999999999999999999999999999999999999999 888753
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure