Citrus Sinensis ID: 012073
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | 2.2.26 [Sep-21-2011] | |||||||
| P49298 | 471 | Citrate synthase, mitocho | N/A | no | 0.893 | 0.893 | 0.978 | 0.0 | |
| O80433 | 472 | Citrate synthase, mitocho | N/A | no | 0.997 | 0.995 | 0.777 | 0.0 | |
| P20115 | 474 | Citrate synthase 4, mitoc | yes | no | 0.893 | 0.888 | 0.862 | 0.0 | |
| Q9M1D3 | 464 | Citrate synthase 5, mitoc | no | no | 0.870 | 0.883 | 0.841 | 0.0 | |
| Q43175 | 471 | Citrate synthase, mitocho | N/A | no | 0.887 | 0.887 | 0.808 | 0.0 | |
| P83372 | 469 | Citrate synthase, mitocho | N/A | no | 0.881 | 0.884 | 0.814 | 0.0 | |
| Q0QHL3 | 465 | Probable citrate synthase | N/A | no | 0.983 | 0.995 | 0.601 | 1e-167 | |
| Q16P20 | 467 | Probable citrate synthase | N/A | no | 0.889 | 0.897 | 0.642 | 1e-167 | |
| Q17GM7 | 467 | Probable citrate synthase | N/A | no | 0.878 | 0.886 | 0.648 | 1e-167 | |
| Q9W401 | 464 | Probable citrate synthase | no | no | 0.887 | 0.900 | 0.649 | 1e-164 |
| >sp|P49298|CISY_CITMA Citrate synthase, mitochondrial OS=Citrus maxima GN=CIT PE=2 SV=1 | Back alignment and function desciption |
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Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/421 (97%), Positives = 417/421 (99%)
Query: 51 HQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK 110
QERLKKVKS+LGKAQLGNIT+D+VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK
Sbjct: 51 QQERLKKVKSDLGKAQLGNITIDVVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK 110
Query: 111 LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAH 170
LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPV+AH
Sbjct: 111 LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVSAH 170
Query: 171 PMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKD 230
PMTQFASGVMALQVQSEFQEAYEKGIHKSK WEPT EDSLNLIARVPVVAAYVYQRIYKD
Sbjct: 171 PMTQFASGVMALQVQSEFQEAYEKGIHKSKSWEPTSEDSLNLIARVPVVAAYVYQRIYKD 230
Query: 231 GKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
GKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD
Sbjct: 231 GKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSF AALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG
Sbjct: 291 PYLSFLAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKL+EVVPPILTKLGKVKNPWPNVDAH
Sbjct: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLYEVVPPILTKLGKVKNPWPNVDAH 410
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA 470
SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA
Sbjct: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA 470
Query: 471 A 471
A
Sbjct: 471 A 471
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Citrus maxima (taxid: 37334) EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1 |
| >sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial OS=Daucus carota GN=CS PE=2 SV=1 | Back alignment and function description |
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| >sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial OS=Arabidopsis thaliana GN=CSY4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial OS=Arabidopsis thaliana GN=CSY5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q43175|CISY_SOLTU Citrate synthase, mitochondrial OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
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| >sp|P83372|CISY_FRAAN Citrate synthase, mitochondrial OS=Fragaria ananassa GN=MCSI PE=1 SV=1 | Back alignment and function description |
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| >sp|Q0QHL3|CISY_GLOMM Probable citrate synthase, mitochondrial OS=Glossina morsitans morsitans PE=2 SV=1 | Back alignment and function description |
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| >sp|Q16P20|CISY2_AEDAE Probable citrate synthase 2, mitochondrial OS=Aedes aegypti GN=AAEL011789 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q17GM7|CISY1_AEDAE Probable citrate synthase 1, mitochondrial OS=Aedes aegypti GN=AAEL002956 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9W401|CISY_DROME Probable citrate synthase, mitochondrial OS=Drosophila melanogaster GN=kdn PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| 325301868 | 471 | citrate synthase [Citrus maxima] | 0.893 | 0.893 | 0.995 | 0.0 | |
| 255928569 | 471 | citrate synthase [Citrus sinensis] | 0.893 | 0.893 | 0.995 | 0.0 | |
| 1352088 | 471 | RecName: Full=Citrate synthase, mitochon | 0.893 | 0.893 | 0.978 | 0.0 | |
| 40646744 | 464 | mitochondrial citrate synthase precursor | 0.878 | 0.892 | 0.997 | 0.0 | |
| 224121066 | 478 | predicted protein [Populus trichocarpa] | 0.995 | 0.981 | 0.821 | 0.0 | |
| 449436243 | 471 | PREDICTED: citrate synthase, mitochondri | 0.893 | 0.893 | 0.907 | 0.0 | |
| 332348715 | 471 | citrate synthase [Paeonia suffruticosa] | 0.893 | 0.893 | 0.900 | 0.0 | |
| 225450299 | 472 | PREDICTED: citrate synthase, mitochondri | 1.0 | 0.997 | 0.819 | 0.0 | |
| 384563698 | 471 | citrate synthase [Rhododendron micranthu | 0.891 | 0.891 | 0.885 | 0.0 | |
| 388891235 | 473 | citrate synthase [Malus baccata] | 0.893 | 0.890 | 0.890 | 0.0 |
| >gi|325301868|gb|ADZ05826.1| citrate synthase [Citrus maxima] | Back alignment and taxonomy information |
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Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/421 (99%), Positives = 420/421 (99%)
Query: 51 HQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK 110
QERLKKVKSELGKAQLGNIT+DMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK
Sbjct: 51 QQERLKKVKSELGKAQLGNITIDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK 110
Query: 111 LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAH 170
LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAH
Sbjct: 111 LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAH 170
Query: 171 PMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKD 230
PMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKD
Sbjct: 171 PMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKD 230
Query: 231 GKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
GKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD
Sbjct: 231 GKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG
Sbjct: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH
Sbjct: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA 470
SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA
Sbjct: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA 470
Query: 471 A 471
A
Sbjct: 471 A 471
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Source: Citrus maxima Species: Citrus maxima Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255928569|gb|ACU42176.1| citrate synthase [Citrus sinensis] | Back alignment and taxonomy information |
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| >gi|1352088|sp|P49298.1|CISY_CITMA RecName: Full=Citrate synthase, mitochondrial; Flags: Precursor gi|624676|gb|AAA82743.1| citrate synthase precursor [Citrus maxima] | Back alignment and taxonomy information |
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| >gi|40646744|gb|AAR88248.1| mitochondrial citrate synthase precursor [Citrus junos] | Back alignment and taxonomy information |
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| >gi|224121066|ref|XP_002330895.1| predicted protein [Populus trichocarpa] gi|222872717|gb|EEF09848.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449436243|ref|XP_004135902.1| PREDICTED: citrate synthase, mitochondrial-like [Cucumis sativus] gi|449524948|ref|XP_004169483.1| PREDICTED: citrate synthase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|332348715|gb|AEE60890.1| citrate synthase [Paeonia suffruticosa] | Back alignment and taxonomy information |
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| >gi|225450299|ref|XP_002271451.1| PREDICTED: citrate synthase, mitochondrial [Vitis vinifera] gi|297741211|emb|CBI32162.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|384563698|gb|AFI08590.1| citrate synthase [Rhododendron micranthum] | Back alignment and taxonomy information |
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| >gi|388891235|gb|AFK80525.1| citrate synthase [Malus baccata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| TAIR|locus:2050554 | 474 | ATCS [Arabidopsis thaliana (ta | 0.891 | 0.886 | 0.835 | 9.2e-194 | |
| TAIR|locus:2101467 | 464 | CSY5 "citrate synthase 5" [Ara | 0.866 | 0.879 | 0.818 | 1.8e-183 | |
| UNIPROTKB|Q16P20 | 467 | AAEL011789 "Probable citrate s | 0.878 | 0.886 | 0.624 | 1.4e-144 | |
| UNIPROTKB|Q17GM7 | 467 | AAEL002956 "Probable citrate s | 0.878 | 0.886 | 0.624 | 1.4e-144 | |
| UNIPROTKB|Q0QHL3 | 465 | Q0QHL3 "Probable citrate synth | 0.983 | 0.995 | 0.575 | 1.6e-143 | |
| FB|FBgn0261955 | 464 | kdn "knockdown" [Drosophila me | 0.887 | 0.900 | 0.622 | 3.7e-142 | |
| UNIPROTKB|Q4S5X1 | 469 | cs "Citrate synthase, mitochon | 0.870 | 0.874 | 0.608 | 7e-141 | |
| UNIPROTKB|Q7ZWZ5 | 468 | cs "Citrate synthase, mitochon | 0.870 | 0.876 | 0.615 | 8.9e-141 | |
| UNIPROTKB|Q6S9V5 | 469 | cs "Citrate synthase, mitochon | 0.870 | 0.874 | 0.605 | 1.1e-140 | |
| UNIPROTKB|Q6S9V6 | 469 | cs "Citrate synthase, mitochon | 0.870 | 0.874 | 0.603 | 2.4e-140 |
| TAIR|locus:2050554 ATCS [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1877 (665.8 bits), Expect = 9.2e-194, P = 9.2e-194
Identities = 351/420 (83%), Positives = 381/420 (90%)
Query: 52 QERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKL 111
Q+RLKK+KSE GK QLGNITVDMVIGGMRGMTGLLWETSLLDP+EGIRFRGLSIPECQK+
Sbjct: 53 QDRLKKLKSEHGKVQLGNITVDMVIGGMRGMTGLLWETSLLDPEEGIRFRGLSIPECQKV 112
Query: 112 LPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHP 171
LP A+ TGKVPSKEQV+ LSK+L +RA VPDYVY AIDALP TAHP
Sbjct: 113 LPTAQSGAEPLPEGLLWLLLTGKVPSKEQVEALSKDLANRAAVPDYVYNAIDALPSTAHP 172
Query: 172 MTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG 231
MTQFASGVMALQVQSEFQ+AYE GIHKSK+WEPTYED LNLIARVPVVAAYVY+R+YK+G
Sbjct: 173 MTQFASGVMALQVQSEFQKAYENGIHKSKFWEPTYEDCLNLIARVPVVAAYVYRRMYKNG 232
Query: 232 KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDP 291
IP D SLDYG NFSHMLGFDD K+ ELMRLY+TIHSDHEGGNVSAHTGHLV SALSDP
Sbjct: 233 DSIPSDKSLDYGANFSHMLGFDDEKVKELMRLYITIHSDHEGGNVSAHTGHLVGSALSDP 292
Query: 292 YLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGF 351
YLSFAAALNGLAGPLHGLANQEVLLWIKSVV+ECGE+++ EQLK+YVWKTLNSGKV+PG+
Sbjct: 293 YLSFAAALNGLAGPLHGLANQEVLLWIKSVVEECGEDISKEQLKEYVWKTLNSGKVIPGY 352
Query: 352 GHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHS 411
GHGVLR TDPRY CQREFALKHLPDDPLFQLVSKL+EVVPP+LT+LGKVKNPWPNVDAHS
Sbjct: 353 GHGVLRNTDPRYVCQREFALKHLPDDPLFQLVSKLYEVVPPVLTELGKVKNPWPNVDAHS 412
Query: 412 GVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKAA 471
GVLLNH+GL EARYYTVLFGVSRSLGICSQLIWDRALGL LERPKSVT+DW+E +CKKA+
Sbjct: 413 GVLLNHYGLTEARYYTVLFGVSRSLGICSQLIWDRALGLALERPKSVTMDWLEAHCKKAS 472
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| TAIR|locus:2101467 CSY5 "citrate synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q16P20 AAEL011789 "Probable citrate synthase 2, mitochondrial" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q17GM7 AAEL002956 "Probable citrate synthase 1, mitochondrial" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0QHL3 Q0QHL3 "Probable citrate synthase, mitochondrial" [Glossina morsitans morsitans (taxid:37546)] | Back alignment and assigned GO terms |
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| FB|FBgn0261955 kdn "knockdown" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4S5X1 cs "Citrate synthase, mitochondrial" [Tetraodon nigroviridis (taxid:99883)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7ZWZ5 cs "Citrate synthase, mitochondrial" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6S9V5 cs "Citrate synthase, mitochondrial" [Kajikia audax (taxid:13721)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6S9V6 cs "Citrate synthase, mitochondrial" [Xiphias gladius (taxid:8245)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6S9V5 | CISY_TETAD | 2, ., 3, ., 3, ., 1 | 0.6301 | 0.8704 | 0.8742 | N/A | no |
| Q6S9V7 | CISY_KATPE | 2, ., 3, ., 3, ., 1 | 0.6277 | 0.8704 | 0.8742 | N/A | no |
| Q6S9V6 | CISY_XIPGL | 2, ., 3, ., 3, ., 1 | 0.6277 | 0.8704 | 0.8742 | N/A | no |
| P23007 | CISY_CHICK | 2, ., 3, ., 3, ., 1 | 0.6131 | 0.8704 | 0.9468 | yes | no |
| Q29RK1 | CISY_BOVIN | 2, ., 3, ., 3, ., 1 | 0.6337 | 0.8789 | 0.8884 | yes | no |
| Q6S9V9 | CISY_THUAL | 2, ., 3, ., 3, ., 1 | 0.6253 | 0.8704 | 0.8742 | N/A | no |
| Q6S9V8 | CISY_THUOB | 2, ., 3, ., 3, ., 1 | 0.6253 | 0.8704 | 0.8742 | N/A | no |
| P83372 | CISY_FRAAN | 2, ., 3, ., 3, ., 1 | 0.8149 | 0.8811 | 0.8848 | N/A | no |
| Q7ZVY5 | CISY_DANRE | 2, ., 3, ., 3, ., 1 | 0.6286 | 0.8726 | 0.8782 | yes | no |
| O80433 | CISY_DAUCA | 2, ., 3, ., 3, ., 1 | 0.7775 | 0.9978 | 0.9957 | N/A | no |
| P34575 | CISY_CAEEL | 2, ., 3, ., 3, ., 1 | 0.5971 | 0.8832 | 0.8888 | yes | no |
| Q9M1D3 | CISY5_ARATH | 2, ., 3, ., 3, ., 1 | 0.8413 | 0.8704 | 0.8836 | no | no |
| Q17GM7 | CISY1_AEDAE | 2, ., 3, ., 3, ., 1 | 0.6481 | 0.8789 | 0.8865 | N/A | no |
| P51044 | CISY_ASPNG | 2, ., 3, ., 3, ., 1 | 0.5804 | 0.8683 | 0.8610 | yes | no |
| Q9CZU6 | CISY_MOUSE | 2, ., 3, ., 3, ., 1 | 0.6289 | 0.8789 | 0.8922 | yes | no |
| A4H9H8 | CISY_LEIBR | 2, ., 3, ., 3, ., 1 | 0.5292 | 0.8789 | 0.8808 | yes | no |
| O00098 | CISY_EMENI | 2, ., 3, ., 3, ., 1 | 0.5825 | 0.8980 | 0.8924 | yes | no |
| P20115 | CISY4_ARATH | 2, ., 3, ., 3, ., 1 | 0.8622 | 0.8938 | 0.8881 | yes | no |
| Q4S5X1 | CISY_TETNG | 2, ., 3, ., 3, ., 1 | 0.5895 | 0.9532 | 0.9573 | N/A | no |
| Q4QDX3 | CISY_LEIMA | 2, ., 3, ., 3, ., 1 | 0.5467 | 0.8768 | 0.8787 | yes | no |
| P79024 | CISY_CANTR | 2, ., 3, ., 3, ., 1 | 0.5662 | 0.8747 | 0.8822 | N/A | no |
| Q10306 | CISY_SCHPO | 2, ., 3, ., 3, ., 1 | 0.5710 | 0.8789 | 0.8571 | yes | no |
| Q61JF9 | CISY_CAEBR | 2, ., 3, ., 3, ., 1 | 0.5990 | 0.8662 | 0.8717 | N/A | no |
| P00889 | CISY_PIG | 2, ., 3, ., 3, ., 1 | 0.6289 | 0.8789 | 0.8922 | yes | no |
| O75390 | CISY_HUMAN | 2, ., 3, ., 3, ., 1 | 0.6313 | 0.8789 | 0.8884 | yes | no |
| P49298 | CISY_CITMA | 2, ., 3, ., 3, ., 1 | 0.9786 | 0.8938 | 0.8938 | N/A | no |
| Q43175 | CISY_SOLTU | 2, ., 3, ., 3, ., 1 | 0.8080 | 0.8874 | 0.8874 | N/A | no |
| Q28DK1 | CISY_XENTR | 2, ., 3, ., 3, ., 1 | 0.6326 | 0.8704 | 0.8760 | yes | no |
| Q0GNE1 | CISY_AMBCR | 2, ., 3, ., 3, ., 1 | 0.6277 | 0.8704 | 0.8742 | N/A | no |
| Q0GNE0 | CISY_IGUIG | 2, ., 3, ., 3, ., 1 | 0.6301 | 0.8704 | 0.8742 | N/A | no |
| Q0QHL3 | CISY_GLOMM | 2, ., 3, ., 3, ., 1 | 0.6012 | 0.9830 | 0.9956 | N/A | no |
| P0C1Z2 | CISY_MACFA | 2, ., 3, ., 3, ., 1 | 0.6313 | 0.8789 | 0.8884 | N/A | no |
| Q7ZWZ5 | CISY_XENLA | 2, ., 3, ., 3, ., 1 | 0.6383 | 0.8726 | 0.8782 | N/A | no |
| Q16P20 | CISY2_AEDAE | 2, ., 3, ., 3, ., 1 | 0.6428 | 0.8895 | 0.8972 | N/A | no |
| A4HXU4 | CISY_LEIIN | 2, ., 3, ., 3, ., 1 | 0.5467 | 0.8768 | 0.8787 | yes | no |
| Q8VHF5 | CISY_RAT | 2, ., 3, ., 3, ., 1 | 0.6216 | 0.8789 | 0.8884 | yes | no |
| P24118 | CISY_TETTH | 2, ., 3, ., 3, ., 1 | 0.5095 | 0.8726 | 0.8896 | N/A | no |
| P34085 | CISY_NEUCR | 2, ., 3, ., 3, ., 1 | 0.5407 | 0.9617 | 0.9658 | N/A | no |
| P00890 | CISY1_YEAST | 2, ., 3, ., 3, ., 1 | 0.5280 | 0.9596 | 0.9436 | yes | no |
| Q553V1 | CISYM_DICDI | 2, ., 3, ., 3, ., 1 | 0.6033 | 0.8789 | 0.9 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.3.1 | 0.994 |
| 3rd Layer | 2.3.3 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 471 | |||
| cd06105 | 427 | cd06105, ScCit1-2_like, Saccharomyces cerevisiae ( | 0.0 | |
| TIGR01793 | 427 | TIGR01793, cit_synth_euk, citrate (Si)-synthase, e | 0.0 | |
| cd06103 | 426 | cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) | 0.0 | |
| PLN02456 | 455 | PLN02456, PLN02456, citrate synthase | 0.0 | |
| PRK09569 | 437 | PRK09569, PRK09569, type I citrate synthase; Revie | 0.0 | |
| cd06106 | 428 | cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc | 0.0 | |
| pfam00285 | 352 | pfam00285, Citrate_synt, Citrate synthase | 1e-126 | |
| cd06118 | 358 | cd06118, citrate_synt_like_1, Citrate synthase (CS | 1e-118 | |
| COG0372 | 390 | COG0372, GltA, Citrate synthase [Energy production | 1e-102 | |
| cd06101 | 265 | cd06101, citrate_synt, Citrate synthase (CS) catal | 5e-75 | |
| cd06099 | 213 | cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr | 3e-73 | |
| cd06110 | 356 | cd06110, BSuCS-II_like, Bacillus subtilis (Bs) cit | 6e-47 | |
| cd06114 | 400 | cd06114, EcCS_like, Escherichia coli (Ec) citrate | 3e-43 | |
| TIGR01800 | 368 | TIGR01800, cit_synth_II, 2-methylcitrate synthase/ | 3e-43 | |
| cd06112 | 373 | cd06112, citrate_synt_like_1_1, Citrate synthase ( | 4e-42 | |
| PRK05614 | 419 | PRK05614, gltA, type II citrate synthase; Reviewed | 1e-37 | |
| cd06107 | 382 | cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec | 5e-37 | |
| PRK14036 | 377 | PRK14036, PRK14036, citrate synthase; Provisional | 3e-36 | |
| PRK14035 | 371 | PRK14035, PRK14035, citrate synthase; Provisional | 1e-33 | |
| cd06113 | 406 | cd06113, citrate_synt_like_1_2, Citrate synthase ( | 2e-33 | |
| PRK14032 | 447 | PRK14032, PRK14032, citrate synthase; Provisional | 4e-33 | |
| TIGR01798 | 412 | TIGR01798, cit_synth_I, citrate synthase I (hexame | 2e-31 | |
| PRK14034 | 372 | PRK14034, PRK14034, citrate synthase; Provisional | 2e-31 | |
| cd06115 | 410 | cd06115, AthCS_per_like, Arabidopsis thaliana (Ath | 6e-31 | |
| cd06111 | 362 | cd06111, DsCS_like, Cold-active citrate synthase ( | 1e-29 | |
| cd06116 | 384 | cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) | 2e-29 | |
| PRK12349 | 369 | PRK12349, PRK12349, citrate synthase 3; Provisiona | 1e-28 | |
| cd06108 | 363 | cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-meth | 2e-27 | |
| PRK14033 | 375 | PRK14033, PRK14033, citrate synthase; Provisional | 7e-26 | |
| cd06117 | 366 | cd06117, Ec2MCS_like_1, Subgroup of Escherichia co | 4e-24 | |
| PRK14037 | 377 | PRK14037, PRK14037, citrate synthase; Provisional | 1e-22 | |
| PRK12351 | 378 | PRK12351, PRK12351, methylcitrate synthase; Provis | 3e-20 | |
| cd06109 | 349 | cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra | 7e-19 | |
| PRK12350 | 353 | PRK12350, PRK12350, citrate synthase 2; Provisiona | 2e-14 | |
| cd06102 | 282 | cd06102, citrate_synt_like_2, Citrate synthase (CS | 1e-10 | |
| cd06101 | 265 | cd06101, citrate_synt, Citrate synthase (CS) catal | 2e-09 | |
| cd06100 | 227 | cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C- | 0.003 |
| >gnl|CDD|99858 cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like | Back alignment and domain information |
|---|
Score = 834 bits (2156), Expect = 0.0
Identities = 284/415 (68%), Positives = 345/415 (83%)
Query: 51 HQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK 110
Q R+KK + E GK +G +TVDMV GGMRG+ GL+WETS+LDP+EGIRFRGLSIPECQK
Sbjct: 12 EQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQK 71
Query: 111 LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAH 170
LLP A EPLPEGL WLLLTG+VP+KEQV LSKE RA +P +V +D P H
Sbjct: 72 LLPKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLH 131
Query: 171 PMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKD 230
PM+Q ++ + AL +S+F +AY +GIHKSKYWE YEDS++LIA++P VAA +Y+ +Y+
Sbjct: 132 PMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCVAAKIYRNLYRG 191
Query: 231 GKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
GKII D +LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVSAHT HLV SALSD
Sbjct: 192 GKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSD 251
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ EQL++YVWKTLNSG+VVPG
Sbjct: 252 PYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPG 311
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
+GH VLRKTDPRYTCQREFALKHLP+DPLF+LVS+L+++VPP+LT+ GK KNPWPNVDAH
Sbjct: 312 YGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAH 371
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 465
SGVLL ++GL E YYTVLFGVSR+LG+ SQLIWDRALGLPLERPKSV+ D +EK
Sbjct: 372 SGVLLQYYGLTEMNYYTVLFGVSRALGVLSQLIWDRALGLPLERPKSVSTDGLEK 426
|
Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). ScCit1 is a nuclear-encoded mitochondrial CS with highly specificity for AcCoA. In addition to its CS function, ScCit1 plays a part in the construction of the TCA cycle metabolon. Yeast cells deleted for Cit1 are hyper-susceptible to apoptosis induced by heat and aging stress. ScCit2 is a peroxisomal CS involved in the glyoxylate cycle; in addition to having activity with AcCoA, it may have activity with PrCoA. Chicken and pig heart CS, two Arabidopsis thaliana (Ath) CSs, CSY4 and -5, and Aspergillus niger (An) CS also belong to this group. Ath CSY4 has a mitochondrial targeting sequence; AthCSY5 has no identifiable targeting sequence. AnCS encoded by the citA gene has both an N-terminal mitochondrial import signal and a C-terminal peroxisiomal target sequence; it is not known if both these signals are functional in vivo. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. Length = 427 |
| >gnl|CDD|130853 TIGR01793, cit_synth_euk, citrate (Si)-synthase, eukaryotic | Back alignment and domain information |
|---|
| >gnl|CDD|99857 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like | Back alignment and domain information |
|---|
| >gnl|CDD|215250 PLN02456, PLN02456, citrate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99859 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like | Back alignment and domain information |
|---|
| >gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL | Back alignment and domain information |
|---|
| >gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like | Back alignment and domain information |
|---|
| >gnl|CDD|99867 cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like | Back alignment and domain information |
|---|
| >gnl|CDD|130859 TIGR01800, cit_synth_II, 2-methylcitrate synthase/citrate synthase II | Back alignment and domain information |
|---|
| >gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >gnl|CDD|180164 PRK05614, gltA, type II citrate synthase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like | Back alignment and domain information |
|---|
| >gnl|CDD|237591 PRK14036, PRK14036, citrate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184468 PRK14035, PRK14035, citrate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99866 cd06113, citrate_synt_like_1_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233579 TIGR01798, cit_synth_I, citrate synthase I (hexameric type) | Back alignment and domain information |
|---|
| >gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99868 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like | Back alignment and domain information |
|---|
| >gnl|CDD|99864 cd06111, DsCS_like, Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like | Back alignment and domain information |
|---|
| >gnl|CDD|99869 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like | Back alignment and domain information |
|---|
| >gnl|CDD|237069 PRK12349, PRK12349, citrate synthase 3; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99861 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like | Back alignment and domain information |
|---|
| >gnl|CDD|237590 PRK14033, PRK14033, citrate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99870 cd06117, Ec2MCS_like_1, Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like | Back alignment and domain information |
|---|
| >gnl|CDD|184470 PRK14037, PRK14037, citrate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|183463 PRK12351, PRK12351, methylcitrate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like | Back alignment and domain information |
|---|
| >gnl|CDD|237070 PRK12350, PRK12350, citrate synthase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >gnl|CDD|99854 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| TIGR01793 | 427 | cit_synth_euk citrate (Si)-synthase, eukaryotic. T | 100.0 | |
| cd06105 | 427 | ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat | 100.0 | |
| KOG2617 | 458 | consensus Citrate synthase [Energy production and | 100.0 | |
| PRK09569 | 437 | type I citrate synthase; Reviewed | 100.0 | |
| cd06106 | 428 | ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl | 100.0 | |
| cd06103 | 426 | ScCS-like Saccharomyces cerevisiae (Sc) citrate sy | 100.0 | |
| PLN02456 | 455 | citrate synthase | 100.0 | |
| cd06115 | 410 | AthCS_per_like Arabidopsis thaliana (Ath) peroxiso | 100.0 | |
| cd06107 | 382 | EcCS_AthCS-per_like Escherichia coli (Ec) citrate | 100.0 | |
| COG0372 | 390 | GltA Citrate synthase [Energy production and conve | 100.0 | |
| cd06116 | 384 | CaCS_like Chloroflexus aurantiacus (Ca) citrate sy | 100.0 | |
| cd06109 | 349 | BsCS-I_like Bacillus subtilis (Bs) citrate synthas | 100.0 | |
| PRK12351 | 378 | methylcitrate synthase; Provisional | 100.0 | |
| TIGR01798 | 412 | cit_synth_I citrate synthase I (hexameric type). T | 100.0 | |
| PRK05614 | 419 | gltA type II citrate synthase; Reviewed | 100.0 | |
| cd06117 | 366 | Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- | 100.0 | |
| PRK14036 | 377 | citrate synthase; Provisional | 100.0 | |
| PRK14032 | 447 | citrate synthase; Provisional | 100.0 | |
| cd06108 | 363 | Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate | 100.0 | |
| cd06112 | 373 | citrate_synt_like_1_1 Citrate synthase (CS) cataly | 100.0 | |
| PRK14035 | 371 | citrate synthase; Provisional | 100.0 | |
| cd06113 | 406 | citrate_synt_like_1_2 Citrate synthase (CS) cataly | 100.0 | |
| PRK14034 | 372 | citrate synthase; Provisional | 100.0 | |
| PRK14037 | 377 | citrate synthase; Provisional | 100.0 | |
| cd06114 | 400 | EcCS_like Escherichia coli (Ec) citrate synthase ( | 100.0 | |
| PF00285 | 356 | Citrate_synt: Citrate synthase; InterPro: IPR00202 | 100.0 | |
| PRK12349 | 369 | citrate synthase 3; Provisional | 100.0 | |
| cd06111 | 362 | DsCS_like Cold-active citrate synthase (CS) from a | 100.0 | |
| cd06118 | 358 | citrate_synt_like_1 Citrate synthase (CS) catalyze | 100.0 | |
| cd06110 | 356 | BSuCS-II_like Bacillus subtilis (Bs) citrate synth | 100.0 | |
| TIGR01800 | 368 | cit_synth_II 2-methylcitrate synthase/citrate synt | 100.0 | |
| PRK14033 | 375 | citrate synthase; Provisional | 100.0 | |
| PRK12350 | 353 | citrate synthase 2; Provisional | 100.0 | |
| cd06101 | 265 | citrate_synt Citrate synthase (CS) catalyzes the c | 100.0 | |
| cd06102 | 282 | citrate_synt_like_2 Citrate synthase (CS) catalyze | 100.0 | |
| cd06099 | 213 | CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya | 100.0 | |
| PRK06224 | 263 | citrate synthase; Provisional | 100.0 | |
| PLN02522 | 608 | ATP citrate (pro-S)-lyase | 100.0 | |
| cd06100 | 227 | CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p | 100.0 | |
| KOG1254 | 600 | consensus ATP-citrate lyase [Energy production and | 99.67 | |
| cd06100 | 227 | CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p | 97.82 | |
| KOG2617 | 458 | consensus Citrate synthase [Energy production and | 95.07 |
| >TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-126 Score=987.40 Aligned_cols=426 Identities=77% Similarity=1.263 Sum_probs=411.3
Q ss_pred cchhhHHHhhchhhHHHHHHHHHhhCCCcccceeecccccccccccccceecceecCCCCeeecCCCHHHHHhhCCCCCC
Q 012073 38 LFIYPSFFFSFLGHQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (471)
Q Consensus 38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~ 117 (471)
++||++++++||.+|+++++||++||+++||++||+|+++||||+++++|+||+||+++||+||||+|+||++.++++.+
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999987777778
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccC
Q 012073 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 197 (471)
Q Consensus 118 ~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~ 197 (471)
+++|.||||+||||||+|||++|+++|+++|.+++.||++|.++|++||+++|||++|+++|++|+++++|+++|+.+.+
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCc
Q 012073 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (471)
Q Consensus 198 ~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~~~~~~~l~~a~n~~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~S 277 (471)
+..||++.++++++|||++|+|+|+|||+.+++|..++||+++||++||++||+++++.+.++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaS 241 (427)
T TIGR01793 162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVS 241 (427)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccch
Confidence 88999999999999999999999999998776776789999999999999999989999999999999999999989999
Q ss_pred hhHHHHHhhcCCChHHHHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 012073 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (471)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr 357 (471)
|||+||||||++|||+|++|||++|+||+||||||+|++||.++.+.+|.+.+++++++||++++++|++||||||+|||
T Consensus 242 TfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr 321 (427)
T TIGR01793 242 AHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLR 321 (427)
T ss_pred hHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999887887778999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhH
Q 012073 358 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 437 (471)
Q Consensus 358 ~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~G 437 (471)
.+|||+++|++++++..+++++++++.++++++++++.++++.||+|||||||+|+|+++||||+.++||++|++||++|
T Consensus 322 ~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~G 401 (427)
T TIGR01793 322 KTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRALG 401 (427)
T ss_pred CCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccch
Confidence 99999999999999998899999999999999999999999999999999999999999999985589999999999999
Q ss_pred HHHHHHHHHHcCCCccCCCccchhHH
Q 012073 438 ICSQLIWDRALGLPLERPKSVTLDWI 463 (471)
Q Consensus 438 wlAH~ieq~~~~~pI~RP~s~~~~~~ 463 (471)
|+||++||++.+.||+||+|++++++
T Consensus 402 w~AH~ieq~~~~~~I~RP~s~~~~~~ 427 (427)
T TIGR01793 402 ILSQLIWDRALGLPLERPKSVSTEWL 427 (427)
T ss_pred HHHHHHHHHHcCCCccCCcccccccC
Confidence 99999999999999999999999874
|
This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans. |
| >cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like | Back alignment and domain information |
|---|
| >KOG2617 consensus Citrate synthase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK09569 type I citrate synthase; Reviewed | Back alignment and domain information |
|---|
| >cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like | Back alignment and domain information |
|---|
| >cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like | Back alignment and domain information |
|---|
| >PLN02456 citrate synthase | Back alignment and domain information |
|---|
| >cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like | Back alignment and domain information |
|---|
| >cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like | Back alignment and domain information |
|---|
| >COG0372 GltA Citrate synthase [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like | Back alignment and domain information |
|---|
| >cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like | Back alignment and domain information |
|---|
| >PRK12351 methylcitrate synthase; Provisional | Back alignment and domain information |
|---|
| >TIGR01798 cit_synth_I citrate synthase I (hexameric type) | Back alignment and domain information |
|---|
| >PRK05614 gltA type II citrate synthase; Reviewed | Back alignment and domain information |
|---|
| >cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like | Back alignment and domain information |
|---|
| >PRK14036 citrate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK14032 citrate synthase; Provisional | Back alignment and domain information |
|---|
| >cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like | Back alignment and domain information |
|---|
| >cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >PRK14035 citrate synthase; Provisional | Back alignment and domain information |
|---|
| >cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >PRK14034 citrate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK14037 citrate synthase; Provisional | Back alignment and domain information |
|---|
| >cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like | Back alignment and domain information |
|---|
| >PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 | Back alignment and domain information |
|---|
| >PRK12349 citrate synthase 3; Provisional | Back alignment and domain information |
|---|
| >cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like | Back alignment and domain information |
|---|
| >cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like | Back alignment and domain information |
|---|
| >TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II | Back alignment and domain information |
|---|
| >PRK14033 citrate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK12350 citrate synthase 2; Provisional | Back alignment and domain information |
|---|
| >cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) | Back alignment and domain information |
|---|
| >cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL | Back alignment and domain information |
|---|
| >PRK06224 citrate synthase; Provisional | Back alignment and domain information |
|---|
| >PLN02522 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
| >cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL | Back alignment and domain information |
|---|
| >KOG1254 consensus ATP-citrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL | Back alignment and domain information |
|---|
| >KOG2617 consensus Citrate synthase [Energy production and conversion] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 471 | ||||
| 2cts_A | 437 | Crystallographic Refinement And Atomic Models Of Tw | 1e-155 | ||
| 4cts_A | 437 | Crystal Structure Analysis And Molecular Model Of A | 1e-155 | ||
| 6csc_A | 437 | Chicken Citrate Synthase Complex With Trifluoroacet | 1e-153 | ||
| 1amz_A | 435 | Chicken Citrate Synthase Complex With Nitromethylde | 1e-153 | ||
| 1csc_A | 433 | Structure Of Ternary Complexes Of Citrate Synthase | 1e-146 | ||
| 5csc_B | 429 | Structure Of An Open Form Of Chicken Heart Citrate | 1e-146 | ||
| 3msu_A | 427 | Crystal Structure Of Citrate Synthase From Francise | 1e-28 | ||
| 1vgp_A | 373 | Crystal Structure Of An Isozyme Of Citrate Synthase | 2e-28 | ||
| 2h12_A | 436 | Structure Of Acetobacter Aceti Citrate Synthase Com | 3e-28 | ||
| 1iom_A | 377 | Crystal Structure Of Citrate Synthase From Thermus | 5e-26 | ||
| 2p2w_A | 367 | Crystal Structure Of Citrate Synthase From Thermoto | 7e-24 | ||
| 2ibp_A | 409 | Crystal Structure Of Citrate Synthase From Pyrobacu | 7e-24 | ||
| 3l96_A | 426 | Structural Determination Of The A50t:s279g:s280k:v2 | 4e-22 | ||
| 1aj8_A | 371 | Citrate Synthase From Pyrococcus Furiosus Length = | 5e-22 | ||
| 4e6y_A | 432 | Type Ii Citrate Synthase From Vibrio Vulnificus Len | 6e-21 | ||
| 1k3p_A | 426 | Three Dimensional Structure Analysis Of The Type Ii | 9e-21 | ||
| 1owb_A | 427 | Three Dimensional Structure Analysis Of The Variant | 2e-20 | ||
| 1o7x_A | 377 | Citrate Synthase From Sulfolobus Solfataricus Lengt | 3e-20 | ||
| 3o8j_A | 404 | Crystal Structure Of 2-Methylcitrate Synthase (Prpc | 4e-20 | ||
| 1nxe_A | 427 | A Novel Nadh Allosteric Regulator Site Is Found On | 1e-19 | ||
| 3tqg_A | 375 | Structure Of The 2-Methylcitrate Synthase (Prpc) Fr | 4e-18 | ||
| 1a59_A | 378 | Cold-Active Citrate Synthase Length = 378 | 2e-17 | ||
| 2c6x_A | 363 | Structure Of Bacillus Subtilis Citrate Synthase Len | 7e-16 | ||
| 1vgm_A | 378 | Crystal Structure Of An Isozyme Of Citrate Synthase | 1e-15 | ||
| 2ifc_A | 385 | The Structure Of The Binary Complex Of Oxalateaceta | 8e-14 | ||
| 2r26_A | 384 | The Structure Of The Ternary Complex Of Carboxymeth | 1e-13 | ||
| 3hwk_A | 414 | Crystal Structure Of Methylcitrate Synthase From My | 4e-09 |
| >pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two Different Forms Of Citrate Synthase At 2.7 And 1.7 Angstroms Resolution Length = 437 | Back alignment and structure |
|
| >pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A Complex Of Citrate Synthase With Oxaloacetate And S-Acetonyl- Coenzyme A Length = 437 | Back alignment and structure |
| >pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With Trifluoroacetonyl-Coa And Citrate Length = 437 | Back alignment and structure |
| >pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa And Malate Length = 435 | Back alignment and structure |
| >pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D- And L-Malate: Mechanistic Implications Length = 433 | Back alignment and structure |
| >pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate Synthase At 2.8 Angstroms Resolution Length = 429 | Back alignment and structure |
| >pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella Tular Length = 427 | Back alignment and structure |
| >pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 373 | Back alignment and structure |
| >pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed With Oxaloacetate And Carboxymethyldethia Coenzyme A (Cmx) Length = 436 | Back alignment and structure |
| >pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 | Back alignment and structure |
| >pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 | Back alignment and structure |
| >pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum Aerophilum Length = 409 | Back alignment and structure |
| >pdb|3L96|A Chain A, Structural Determination Of The A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate Synthase From E. Coli Length = 426 | Back alignment and structure |
| >pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus Length = 371 | Back alignment and structure |
| >pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus Length = 432 | Back alignment and structure |
| >pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii Citrate From E.Coli Length = 426 | Back alignment and structure |
| >pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l Nadh Complex Of Type Ii Citrate Synthase From E. Coli Length = 427 | Back alignment and structure |
| >pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 | Back alignment and structure |
| >pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From Salmonella Typhimurium Length = 404 | Back alignment and structure |
| >pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The Surfa Hexameric Type Ii Phe383ala Variant Of Citrate Synthase Length = 427 | Back alignment and structure |
| >pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From Coxiella Burnetii Length = 375 | Back alignment and structure |
| >pdb|1A59|A Chain A, Cold-Active Citrate Synthase Length = 378 | Back alignment and structure |
| >pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 | Back alignment and structure |
| >pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 378 | Back alignment and structure |
| >pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With Citrate Synthase From The Thermophilic Archaeon Thermolasma Acidophilum Length = 385 | Back alignment and structure |
| >pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl Coenzyme A And Oxalateacetate With Citrate Synthase From The Thermophilic Archaeonthermoplasma Acidophilum Length = 384 | Back alignment and structure |
| >pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From Mycobacterium Tuberculosis Length = 414 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 | Back alignment and structure |
|---|
Score = 657 bits (1698), Expect = 0.0
Identities = 258/420 (61%), Positives = 326/420 (77%), Gaps = 1/420 (0%)
Query: 50 GHQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQ 109
Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDPDEGIRFRG SIPECQ
Sbjct: 14 KEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQ 73
Query: 110 KLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTA 169
KLLP A EPLPEGL WLL+TG++P+ EQV +SKE RA +P +V +D P
Sbjct: 74 KLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNL 133
Query: 170 HPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYK 229
HPM+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA++P VAA +Y+ +Y+
Sbjct: 134 HPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYR 193
Query: 230 DGK-IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASAL 288
G I D LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVSAHT HLV SAL
Sbjct: 194 AGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSAL 253
Query: 289 SDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVV 348
SDPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+L+DY+W TLNSG+VV
Sbjct: 254 SDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVV 313
Query: 349 PGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVD 408
PG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + GK KNPWPNVD
Sbjct: 314 PGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVD 373
Query: 409 AHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 468
AHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ +EK
Sbjct: 374 AHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTAGLEKLSA 433
|
| >2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 | Back alignment and structure |
|---|
| >1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 | Back alignment and structure |
|---|
| >2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 | Back alignment and structure |
|---|
| >1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 | Back alignment and structure |
|---|
| >3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
| >3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 | Back alignment and structure |
|---|
| >2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 | Back alignment and structure |
|---|
| >3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 | Back alignment and structure |
|---|
| >1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 | Back alignment and structure |
|---|
| >1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 | Back alignment and structure |
|---|
| >1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 | Back alignment and structure |
|---|
| >1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 | Back alignment and structure |
|---|
| >3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 | Back alignment and structure |
|---|
| >2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Length = 409 | Back alignment and structure |
|---|
| >2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 | Back alignment and structure |
|---|
| >3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| 1csh_A | 435 | Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A | 100.0 | |
| 3hwk_A | 414 | Methylcitrate synthase; niaid, ssgcid, structural | 100.0 | |
| 3msu_A | 427 | Citrate synthase; helix bundle, APHA-beta fold, cs | 100.0 | |
| 2h12_A | 436 | Citrate synthase; acidophIle, acetic acid resistan | 100.0 | |
| 2ibp_A | 409 | Citrate synthase; disulfide bond, homodimer, therm | 100.0 | |
| 3l96_A | 426 | Citrate synthase; quaternary, hexamer, GRAM-negati | 100.0 | |
| 2p2w_A | 367 | Citrate synthase; transferase, structural genomics | 100.0 | |
| 3tqg_A | 375 | 2-methylcitrate synthase; energy metabolism, trans | 100.0 | |
| 3o8j_A | 404 | 2-methylcitrate synthase; short chain fatty acids, | 100.0 | |
| 2c6x_A | 363 | Citrate synthase 1; tricarboxylic acid cycle, tran | 100.0 | |
| 1o7x_A | 377 | Citrate synthase; lyase, tricarboxylic acid cycle; | 100.0 | |
| 1iom_A | 377 | Citrate synthase; open form, riken structural geno | 100.0 | |
| 1vgm_A | 378 | 378AA long hypothetical citrate synthase; open for | 100.0 | |
| 1aj8_A | 371 | Citrate synthase; hyperthermostable, lyase; HET: C | 100.0 | |
| 1a59_A | 378 | Citrate synthase; cold-activity; HET: COA CIT; 2.0 | 100.0 | |
| 2ifc_A | 385 | Citrate synthase; oxaloacetate, EC 2.3.3.1, transf | 100.0 | |
| 1vgp_A | 373 | 373AA long hypothetical citrate synthase; open for | 100.0 |
| >1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-121 Score=961.28 Aligned_cols=432 Identities=60% Similarity=1.056 Sum_probs=415.0
Q ss_pred cchhhHHHhhchhhHHHHHHHHHhhCCCcccceeecccccccccccccceecceecCCCCeeecCCCHHHHHhhCCCCCC
Q 012073 38 LFIYPSFFFSFLGHQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (471)
Q Consensus 38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~ 117 (471)
++|||+++++||.+++++|+||++||++++|++|+||+++||+|+++++|+||+||+++||+||||+|+||++++|++++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~ 81 (435)
T 1csh_A 2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG 81 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998878
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccC
Q 012073 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 197 (471)
Q Consensus 118 ~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~ 197 (471)
+.+++||||+||||+|+|||++|+++|+++|.+++.+|+++.++|++||+++|||++|+++|++|+++++|+++|+++.+
T Consensus 82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~ 161 (435)
T 1csh_A 82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN 161 (435)
T ss_dssp CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCC-cccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCC
Q 012073 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG-KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNV 276 (471)
Q Consensus 198 ~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~-~~~~~~~~l~~a~n~~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~ 276 (471)
+++||++.++++++|||++|+|+|++||++++++ .+++|++++||++||++||++|++.++++||++|||||||||+|+
T Consensus 162 ~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~ 241 (435)
T 1csh_A 162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV 241 (435)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCch
Confidence 6778999999999999999999999999998765 578999999999999999999999999999999999999976999
Q ss_pred chhHHHHHhhcCCChHHHHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 012073 277 SAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 356 (471)
Q Consensus 277 St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vy 356 (471)
||||+|+++||++|+|+|++||+++|+||+||||||+|++||.++.++||++.+++++++||++.+++|++|||||||||
T Consensus 242 STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVy 321 (435)
T 1csh_A 242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL 321 (435)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCcccc
Confidence 99999999999999999999999999999999999999999999988888766789999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhh
Q 012073 357 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 436 (471)
Q Consensus 357 r~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~ 436 (471)
|+.|||+++|+++++++.+++++++++.+||+++++++.++++.|++|||||||+|+++++||||+.++||++|++||++
T Consensus 322 k~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~ 401 (435)
T 1csh_A 322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRAL 401 (435)
T ss_dssp CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhH
Confidence 99999999999999999888999999999999999988888999999999999999999999995459999999999999
Q ss_pred HHHHHHHHHHHcCCCccCCCccchhHHHHHhhh
Q 012073 437 GICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 469 (471)
Q Consensus 437 GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~~~ 469 (471)
||+||++||+..+.||+||+|+||++++++|+.
T Consensus 402 Gw~AH~~Eq~~~~~~I~RP~~~y~~~~~~~~~~ 434 (435)
T 1csh_A 402 GVLAQLIWSRALGFPLERPKSMSTAGLEKLSAG 434 (435)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCcCcHHHhhHHHHHHhcC
Confidence 999999999999988999999999999999863
|
| >3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} | Back alignment and structure |
|---|
| >2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} | Back alignment and structure |
|---|
| >2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} | Back alignment and structure |
|---|
| >3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A | Back alignment and structure |
|---|
| >2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 | Back alignment and structure |
|---|
| >3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} | Back alignment and structure |
|---|
| >2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 | Back alignment and structure |
|---|
| >1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* | Back alignment and structure |
|---|
| >1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 | Back alignment and structure |
|---|
| >1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 | Back alignment and structure |
|---|
| >2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* | Back alignment and structure |
|---|
| >1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 471 | ||||
| d1csha_ | 435 | a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g | 1e-133 | |
| d1k3pa_ | 426 | a.103.1.1 (A:) Citrate synthase {Escherichia coli | 1e-68 | |
| d1ioma_ | 374 | a.103.1.1 (A:) Citrate synthase {Thermus thermophi | 1e-65 | |
| d1o7xa_ | 367 | a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob | 1e-65 | |
| d1a59a_ | 377 | a.103.1.1 (A:) Citrate synthase {Antarctic bacteri | 6e-56 | |
| d1aj8a_ | 371 | a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc | 2e-54 |
| >d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 390 bits (1002), Expect = e-133
Identities = 258/416 (62%), Positives = 326/416 (78%), Gaps = 1/416 (0%)
Query: 51 HQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK 110
Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDPDEGIRFRG SIPECQK
Sbjct: 15 EQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQK 74
Query: 111 LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAH 170
LLP A EPLPEGL WLL+TG++P+ EQV +SKE RA +P +V +D P H
Sbjct: 75 LLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLH 134
Query: 171 PMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKD 230
PM+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA++P VAA +Y+ +Y+
Sbjct: 135 PMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRA 194
Query: 231 GKIIPK-DDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALS 289
G I D LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVSAHT HLV SALS
Sbjct: 195 GSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALS 254
Query: 290 DPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVP 349
DPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+L+DY+W TLNSG+VVP
Sbjct: 255 DPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVP 314
Query: 350 GFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDA 409
G+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + GK KNPWPNVDA
Sbjct: 315 GYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDA 374
Query: 410 HSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 465
HSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ +EK
Sbjct: 375 HSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTAGLEK 430
|
| >d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 | Back information, alignment and structure |
|---|
| >d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 | Back information, alignment and structure |
|---|
| >d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 | Back information, alignment and structure |
|---|
| >d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 | Back information, alignment and structure |
|---|
| >d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| d1csha_ | 435 | Citrate synthase {Chicken (Gallus gallus) [TaxId: | 100.0 | |
| d1k3pa_ | 426 | Citrate synthase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1ioma_ | 374 | Citrate synthase {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1o7xa_ | 367 | Citrate synthase {Archaeon Sulfolobus solfataricus | 100.0 | |
| d1a59a_ | 377 | Citrate synthase {Antarctic bacterium DS2-3R [TaxI | 100.0 | |
| d1aj8a_ | 371 | Citrate synthase {Archaeon Pyrococcus furiosus [Ta | 100.0 |
| >d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=2.6e-123 Score=974.58 Aligned_cols=431 Identities=60% Similarity=1.058 Sum_probs=416.9
Q ss_pred ccchhhHHHhhchhhHHHHHHHHHhhCCCcccceeecccccccccccccceecceecCCCCeeecCCCHHHHHhhCCCCC
Q 012073 37 FLFIYPSFFFSFLGHQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAK 116 (471)
Q Consensus 37 ~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~ 116 (471)
+++|||+++++||++++++|+||++||++++|++|+||+++||||+++++|+||+|||++||+||||+|+||++.+|++.
T Consensus 1 ~~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~it~d~~~~Glrg~~~~~t~iS~iDg~~Gi~YRGy~I~eL~~~l~k~~ 80 (435)
T d1csha_ 1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAG 80 (435)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeecccccccCCCceeEEeceeEcCccceeECCccHHHHHHHhhccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhcc
Q 012073 117 PDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGI 196 (471)
Q Consensus 117 ~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~ 196 (471)
++++++||||+||||||+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|++++++...|.++.
T Consensus 81 ~~e~~~fEEV~yLLl~GeLPt~~EL~~f~~~L~~~~~lp~~v~~~i~~~P~~~hPM~~L~~~vsaL~~~~~~~~~~~~~~ 160 (435)
T d1csha_ 81 GGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGI 160 (435)
T ss_dssp TCCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTC
T ss_pred ccccCcHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhcCCccHHHHHHHHHHHhhccCccchhhcccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc-ccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCC
Q 012073 197 HKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK-IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGN 275 (471)
Q Consensus 197 ~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~-~~~~~~~l~~a~n~~~ml~~~~~~~~~~l~~~LvL~ADHeg~n 275 (471)
++.++||+.++++++|||++|+|+|++||+.++.|. +++||+++||++||++|+++++|...++||++|||||||||+|
T Consensus 161 ~~~~~~e~~~~~a~~LiAk~P~i~A~~yr~~~~~g~~~~~pd~~ls~a~nfl~ml~~~~p~~~~~l~~~lil~aDHeg~n 240 (435)
T d1csha_ 161 NRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGN 240 (435)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCS
T ss_pred cccccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCCCCCCCcCHHHHHHHHhcCccHHHHHHHHHHHHHHhhccCCc
Confidence 888999999999999999999999999998766664 6789999999999999999999999999999999999999899
Q ss_pred CchhHHHHHhhcCCChHHHHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCC
Q 012073 276 VSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGV 355 (471)
Q Consensus 276 ~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~v 355 (471)
+||||+|+++||++|+|+|++||+++|+||+||||||+|++||.++.+.++.+.+++++++||++.+++|++||||||||
T Consensus 241 ~St~a~rvvaSt~sd~~sav~agi~al~GplHGGA~~~v~~~l~~i~~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGH~v 320 (435)
T d1csha_ 241 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAV 320 (435)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSS
T ss_pred chHHHHHHHhccccchHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCcccccCccc
Confidence 99999999999999999999999999999999999999999999999887766789999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhh
Q 012073 356 LRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 435 (471)
Q Consensus 356 yr~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~ 435 (471)
||+.|||+++|+++++++++++++++++.++++++.+++.++++.|++|||||||+|++|++||||+.++||++|++||+
T Consensus 321 yk~~DPRa~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~k~l~pNVD~~sg~~~~~lG~p~~~~~t~lFa~sR~ 400 (435)
T d1csha_ 321 LRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA 400 (435)
T ss_dssp CCSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999866899999999999
Q ss_pred hHHHHHHHHHHHcCCCccCCCccchhHHHHHh
Q 012073 436 LGICSQLIWDRALGLPLERPKSVTLDWIEKNC 467 (471)
Q Consensus 436 ~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~ 467 (471)
+||+||++||++.+.||+||+|+|+|.+++..
T Consensus 401 ~Gw~AH~~Eq~~~~~~i~RP~~~Y~g~~~r~~ 432 (435)
T d1csha_ 401 LGVLAQLIWSRALGFPLERPKSMSTAGLEKLS 432 (435)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCCCccCCChhhhcc
Confidence 99999999999998899999999999999875
|
| >d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} | Back information, alignment and structure |
|---|
| >d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|