Citrus Sinensis ID: 012075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
Protein Sequence
MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKDEKSPEESTNSKEVTLPAADDGAVGGLTKLR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHcHHHEEEcccccccccEEEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEccHHHHEEEEEHHHHccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccHHHEEEccccEEEEEccccHHHHHHHHHHHHccccEEEEEHHHHHHccHEEEccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccEcccccccccccEEEcc
Coil and Loop (DISEMBL)
mskrgesagkqqmvvgksrfrynspLVQVCLIGLvcfccpgmfnalsgmggggqvdttaannantaLYTTFTIFGilgggiynilgpQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWaaegaimtsypppnrkgtyISIFWSIFNMGGVIGGLIPFIlnynrneavsvndgtYIGFMCFMSAGALLSlvilppgrvirddgthctnikysnVSTEITQVLKLFSNWKMLLifpaswasnffYSYQFNNvnglqfnlrtrglnnvFYWGAQMLGsvgigyifdfsfptrrkrGFVGIVVVALLGSAIwagglanqlnyshdkppakldfknsgsdfagpFVLYFCYGLLDAMFQSMVYWVIGAladdsetlsrYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAvkdekspeestnskevtlpaaddgavggltklr
Flexible Loop (DISEMBL)
mskrgesagkqqmvvgksrfryNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHctnikysnvsTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKDekspeestnskevtlpaaddgavggltklr
Low Complexity Region (SEG)
MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDttaannantaLYttftifgilgggiynilgPQVTLISACSTYVLYAGSFLYYNHHKHQafaiaagailgigagllwaaegaiMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKDEKSPEESTNSKEVTLPAADDGAVGGLTKLR
Disordered region (IsUnstruct)
**************VGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSH*******DFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAV********************************
Disordered Region (DISOPRED)
*******************FRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP*******************VSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLA*********************************
Disordered Region (DISEMBL)
************MVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKD************VTLPAADDGAVGGLTKLR
Disordered Region (DISPRO)
***************GKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKDE*****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKDEKSPEESTNSKEVTLPAADDGAVGGLTKLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	471	2.2.26 [Sep-21-2011]
Q8LG53	459	UNC93-like protein 2 OS=A	yes	no	0.923	0.947	0.745	0.0
Q56WD3	459	UNC93-like protein 1 OS=A	yes	no	0.923	0.947	0.745	0.0
Q9URX1	504	UNC93-like protein C922.0	yes	no	0.902	0.843	0.403	5e-87
O14237	489	Uncharacterized membrane	no	no	0.806	0.777	0.342	3e-52

>sp|Q8LG53|UN932_ARATH UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/436 (74%), Positives = 371/436 (85%), Gaps = 1/436 (0%)

Query: 6   ESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANT 65
           +  G ++    ++++R+NSPL QV L+G VCFCCPGMFNALSGMGGGGQVD TAANNANT
Sbjct: 13  KHGGGEENKSPENKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANT 72

Query: 66  ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILG 125
           A+YT FT+FG+LGGG YN+LGP++TL + CSTYVLYAGSFLYYNHH HQAFAI AGA+LG
Sbjct: 73  AVYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLG 132

Query: 126 IGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVND 185
            GAGLLWA EGA+MTSYPPP+RKGTYI++FWSIFN+GGVIGGLIPFILNY R+ A SVND
Sbjct: 133 CGAGLLWAGEGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVND 192

Query: 186 GTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLL 245
            TYI FMCFM AG LLS  ILP   VIR+DG+ C+ +KYS  STE   VL+LF + KMLL
Sbjct: 193 STYIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLL 252

Query: 246 IFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRK 305
           I PA+WASNFFYSYQFNNVNGL FNLRTRG NNVFYWGAQM GS+ IGY+ DFSF +RR 
Sbjct: 253 IVPAAWASNFFYSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRA 312

Query: 306 RGFVGIVVVALLGSAIWAGGLANQLNYSHDK-PPAKLDFKNSGSDFAGPFVLYFCYGLLD 364
           RGF GI +VA++G+ IWAGGLANQ  YS DK P  KLDFK+SG +FAGPFVLY  YGLLD
Sbjct: 313 RGFTGISLVAVIGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLD 372

Query: 365 AMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLT 424
           AM+QSMVYW+IGALADDS+TLSRYSGFYKGVQSAGAAVAWQVDT KV L+SQL+VNWSLT
Sbjct: 373 AMYQSMVYWLIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLT 432

Query: 425 TISYPLLVILVLLAVK 440
           T+SYPLLV+LV   VK
Sbjct: 433 TVSYPLLVLLVYFYVK 448

Arabidopsis thaliana (taxid: 3702)

>sp|Q56WD3|UN931_ARATH UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/436 (74%), Positives = 371/436 (85%), Gaps = 1/436 (0%)

Query: 6   ESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANT 65
           +  G ++    ++++R+NSPL QV L+G VCFCCPGMFNALSGMGGGGQVD TAANNANT
Sbjct: 13  KHGGGEENKSPENKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANT 72

Query: 66  ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILG 125
           A+YT FT+FG+LGGG YN+LGP++TL + CSTYVLYAGSFLYYNHH HQAFAI AGA+LG
Sbjct: 73  AVYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLG 132

Query: 126 IGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVND 185
            GAGLLWA EGA+MTSYPPP+RKGTYI++FWSIFN+GGVIGGLIPFILNY R+ A SVND
Sbjct: 133 CGAGLLWAGEGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVND 192

Query: 186 GTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLL 245
            TYI FMCFM AG LLS  ILP   VIR+DG+ C+ +KYS  STE   VL+LF + KMLL
Sbjct: 193 STYIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLL 252

Query: 246 IFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRK 305
           I PA+WASNFFYSYQFNNVNGL FNLRTRG NNVFYWGAQM GS+ IGY+ DFSF +RR 
Sbjct: 253 IVPAAWASNFFYSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRA 312

Query: 306 RGFVGIVVVALLGSAIWAGGLANQLNYSHDK-PPAKLDFKNSGSDFAGPFVLYFCYGLLD 364
           RGF GI +VA++G+ IWAGGLANQ  YS DK P  KLDFK+SG +FAGPFVLY  YGLLD
Sbjct: 313 RGFTGISLVAVIGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLD 372

Query: 365 AMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLT 424
           AM+QSMVYW+IGALADDS+TLSRYSGFYKGVQSAGAAVAWQVDT KV L+SQL+VNWSLT
Sbjct: 373 AMYQSMVYWLIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLT 432

Query: 425 TISYPLLVILVLLAVK 440
           T+SYPLLV+LV   VK
Sbjct: 433 TVSYPLLVLLVYFYVK 448

Arabidopsis thaliana (taxid: 3702)

>sp|Q9URX1|YLX5_SCHPO UNC93-like protein C922.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC922.05c PE=3 SV=1

 Score =  322 bits (824), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/441 (40%), Positives = 263/441 (59%), Gaps = 16/441 (3%)

Query: 19  RFR---YNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFG 75
           RF+   Y S L Q  ++  VCF CPGMFNALSG+GGGG+V+   AN+AN ALY+TF   G
Sbjct: 50  RFKSLAYGSALTQTIIVSWVCFLCPGMFNALSGLGGGGEVNADVANDANVALYSTFAGLG 109

Query: 76  ILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE 135
              G I N++G ++TL    + Y +Y  S L Y H  ++ F I  G  LG+ AG+LWAA+
Sbjct: 110 FFAGSICNLIGVKLTLAIGGTGYSVYTASLLCYKHVYNRGFVIFGGCYLGLTAGMLWAAQ 169

Query: 136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFM 195
           GA++ SYP    K  YI+IFW IFN+G VIG ++P +     +   SV DGTY GF+  M
Sbjct: 170 GAVIMSYPREENKARYIAIFWGIFNLGAVIGSIVP-LAQTMHSSVNSVGDGTYAGFIVLM 228

Query: 196 SAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLK-LFSNWKMLLIFPASWASN 254
           + G+ L+L ++ P + +++DG      K      E+  +++ L+  + +LL+FP  ++SN
Sbjct: 229 AVGSALALFMVSPEKTVKEDGKFVHIEKSMGWKKELLGLVQTLYKEYWVLLLFPMFFSSN 288

Query: 255 FFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVV 314
           +F +YQFN+ N   FN+RTR LNN+ YW AQ++GS       D+    R  R  VG  +V
Sbjct: 289 WFTTYQFNDFNLAYFNIRTRSLNNLLYWFAQIMGSAVAALFLDWQRFNRVIRARVGWGLV 348

Query: 315 ALLGSAIWAGGLANQLNYSHDKPPAKLDF---KNSGSDFAGPFVLYFCYGLLDAMFQSMV 371
            +L   IW GGLA QL Y+  K  A+ DF     +   + G   LY  YG+LDA+FQS  
Sbjct: 349 FVLICVIWGGGLAFQLKYTR-KSVAESDFVVTDFTHRGYTGYAFLYIFYGMLDAIFQSYA 407

Query: 372 YWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTT----IS 427
           YW+IG+L++D+  L+ Y GFYK +QSAGAA+ +++DT  +  ++     W+L      ++
Sbjct: 408 YWIIGSLSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYMNYFASCWALLCGSLIVA 467

Query: 428 YPLL---VILVLLAVKDEKSP 445
            P++   + L    ++DE  P
Sbjct: 468 SPVIWKKIKLTTEGIEDEIPP 488

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O14237|YEL4_SCHPO Uncharacterized membrane protein C6F6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.04c PE=4 SV=1

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 200/391 (51%), Gaps = 11/391 (2%)

Query: 35  VCFCCPGMFNALSGMG-GGGQVDT-TAANNANTALYTTFTIFGILGGGIYNILGPQVTLI 92
           + FCCPG++ A++G+G GGG  D    A+  N+ LY  FT+ G  GG I   LGP+  L 
Sbjct: 34  ILFCCPGIYLAVTGLGAGGGHPDAYHMADVTNSLLYALFTVCGWAGGPILKYLGPRWALA 93

Query: 93  SACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYI 152
              + Y +Y G   Y+++   Q F I  GA  GI AGLLWA+   I  SY   N+K  +I
Sbjct: 94  LGATGYPIYIGGLWYFDNTGKQGFTIFTGAYEGIAAGLLWASTAYISLSYSCANQKSQFI 153

Query: 153 SIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLS-LVILPPGRV 211
           +  W+I   G  +G  I F +NY+ + +  V    YI F+  M+   LL+ L I  P  V
Sbjct: 154 ATQWTILAFGSTVGSFIAFGINYH-STSTGVPMAVYIIFIIIMACAVLLAILFIKSPSDV 212

Query: 212 IRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNL 271
            + DGT   +        E+  + +   +W++L + PAS+AS    ++Q +++N   F+L
Sbjct: 213 RKSDGTSALSPSNKTFGQELWGLFEAAKDWRLLCLLPASFASQSTIAWQ-SHLNSYYFSL 271

Query: 272 RTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLN 331
           RTR LNNV +W  Q         I D     RR RG +G+ + A++  A  +G L   ++
Sbjct: 272 RTRSLNNVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVS 331

Query: 332 YS---HDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRY 388
                HD  P  LD+   G  + G  VLY   G+        V W I  L+ D +  +RY
Sbjct: 332 KHIDLHDTSP-DLDWTQRG--YGGALVLYLLMGIQYGSSIVSVQWCISLLSSDPDKYARY 388

Query: 389 SGFYKGVQSAGAAVAWQVDTHKVSLLSQLVV 419
           +G YKG Q+AG  V++ +D   VS L Q ++
Sbjct: 389 AGLYKGTQAAGMCVSFGIDAAGVSFLGQGII 419

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
224121128	462	predicted protein [Populus trichocarpa]	0.953	0.971	0.812	0.0
255549108	466	conserved hypothetical protein [Ricinus	0.953	0.963	0.796	0.0
449508376	458	PREDICTED: LOW QUALITY PROTEIN: UNC93-li	0.953	0.980	0.768	0.0
449439027	561	PREDICTED: UNC93-like protein 1-like [Cu	0.949	0.796	0.767	0.0
225455167	472	PREDICTED: UNC93-like protein C922.05c [	0.974	0.972	0.759	0.0
449508384	463	PREDICTED: UNC93-like protein 1-like [Cu	0.963	0.980	0.757	0.0
449439025	469	PREDICTED: UNC93-like protein 1-like [Cu	0.974	0.978	0.723	0.0
357464297	465	UNC93-like protein C922.05c [Medicago tr	0.934	0.946	0.746	0.0
18394560	459	transmembrane transporter-like protein [	0.923	0.947	0.745	0.0
356500815	450	PREDICTED: UNC93-like protein C922.05c-l	0.898	0.94	0.784	0.0

>gi|224121128|ref|XP_002318504.1| predicted protein [Populus trichocarpa] gi|222859177|gb|EEE96724.1| predicted protein [Populus trichocarpa]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/449 (81%), Positives = 396/449 (88%)

Query: 1   MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAA 60
           M   G+       V  KSRFRYNSPLVQ+ LIGLVCFCCPGMFNALSGMGGGGQV+ TAA
Sbjct: 1   MGFEGDEESAANQVSTKSRFRYNSPLVQITLIGLVCFCCPGMFNALSGMGGGGQVNPTAA 60

Query: 61  NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAA 120
           NNANTALYTTF IFG+LGGGIYNILGP++TL + CSTYVLYAGSFLYYNH +HQ+FAI A
Sbjct: 61  NNANTALYTTFAIFGVLGGGIYNILGPRLTLAAGCSTYVLYAGSFLYYNHKQHQSFAIVA 120

Query: 121 GAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA 180
           GAILGIGAG LWA EGAIMTSYPPP+RKGTYIS+FWSIFNMGGVIGGLIPFILNYNR+EA
Sbjct: 121 GAILGIGAGFLWAGEGAIMTSYPPPHRKGTYISLFWSIFNMGGVIGGLIPFILNYNRSEA 180

Query: 181 VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSN 240
            SVNDGTYIGFMCFM+AG LLSL ILPP +V+RDDGT CTNIKYS VSTE  ++ KLF N
Sbjct: 181 ASVNDGTYIGFMCFMTAGTLLSLAILPPSKVVRDDGTRCTNIKYSKVSTEAVEIGKLFFN 240

Query: 241 WKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSF 300
           WKMLLI PA+WASNFFYSYQFNNVNG  FNLRTRGLNNVFYWGAQM+GSVGIGYI DFSF
Sbjct: 241 WKMLLIAPAAWASNFFYSYQFNNVNGALFNLRTRGLNNVFYWGAQMVGSVGIGYILDFSF 300

Query: 301 PTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY 360
            +RRKRGFVGI +VA LG+AIWAGGLA Q+ Y H+  P KLDFK+SGSDFAGPFVLYF Y
Sbjct: 301 QSRRKRGFVGIGIVAALGTAIWAGGLAKQVGYKHNDLPPKLDFKDSGSDFAGPFVLYFSY 360

Query: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVN 420
           GLLDAMFQSMVYWVIGALADDSE LSRY GFYKGVQSAGAAVAWQVD HKV LLSQL+VN
Sbjct: 361 GLLDAMFQSMVYWVIGALADDSEILSRYVGFYKGVQSAGAAVAWQVDAHKVPLLSQLIVN 420

Query: 421 WSLTTISYPLLVILVLLAVKDEKSPEEST 449
           WSLTT+SYPLL ILV+LAVKD++  EE +
Sbjct: 421 WSLTTVSYPLLAILVMLAVKDDQKGEEPS 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549108|ref|XP_002515609.1| conserved hypothetical protein [Ricinus communis] gi|223545247|gb|EEF46754.1| conserved hypothetical protein [Ricinus communis]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/453 (79%), Positives = 399/453 (88%), Gaps = 4/453 (0%)

Query: 17  KSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGI 76
           KS  RYNSPLVQV LIGLVCFCCPGMFNALSGMGGGGQVD TAANNANTALYTTF IFG+
Sbjct: 16  KSILRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQVDPTAANNANTALYTTFAIFGV 75

Query: 77  LGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG 136
           LGGGIYNILGP++TL + CSTYVLYAGSFLYYNH++HQ FAI AG ILG+GAGLLWA EG
Sbjct: 76  LGGGIYNILGPRLTLAAGCSTYVLYAGSFLYYNHYQHQTFAIVAGGILGVGAGLLWAGEG 135

Query: 137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMS 196
           AIMTSYPPP+RKGTYISIFWSIFNMGGVIGGLIPF LNY+R+EA SVND TYIGFMCFM+
Sbjct: 136 AIMTSYPPPHRKGTYISIFWSIFNMGGVIGGLIPFFLNYHRSEAASVNDATYIGFMCFMA 195

Query: 197 AGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFF 256
           AG LLSL ILPP +V+RDDGTHC+NIKYS VSTE T+++KLF NWKMLLI PA+WASNFF
Sbjct: 196 AGTLLSLAILPPSQVVRDDGTHCSNIKYSKVSTEATEIVKLFLNWKMLLIVPAAWASNFF 255

Query: 257 YSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVAL 316
           YSYQFNNVNG+ FNLRTRGLNNVFYWGAQMLGSVGIG++ DFSF +R+ RGFVGI +VA+
Sbjct: 256 YSYQFNNVNGVLFNLRTRGLNNVFYWGAQMLGSVGIGWVLDFSFKSRKMRGFVGIGIVAV 315

Query: 317 LGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIG 376
           LG+AIW GGLANQL YSH+  P KLDFK+SGSDF GPFVLYF YGLLDAMFQS VYWVIG
Sbjct: 316 LGTAIWGGGLANQLRYSHNNLPPKLDFKDSGSDFGGPFVLYFSYGLLDAMFQSSVYWVIG 375

Query: 377 ALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVL 436
           ALADDSE LSRY GFYKGVQSAGAA+AWQVDTHKV LLSQL+VNWSLTT+SYPLL++LV+
Sbjct: 376 ALADDSEILSRYVGFYKGVQSAGAAIAWQVDTHKVPLLSQLIVNWSLTTVSYPLLIVLVM 435

Query: 437 LAVKDEKSPEESTNSKEVTLPAADDGAVGGLTK 469
           LAVKD+   EE  +++     A  D    G TK
Sbjct: 436 LAVKDDHKIEERVSNES----AKTDSVAEGTTK 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508376|ref|XP_004163297.1| PREDICTED: LOW QUALITY PROTEIN: UNC93-like protein 1-like [Cucumis sativus]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/449 (76%), Positives = 384/449 (85%)

Query: 1   MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAA 60
           M  +G+       V  KS+FR+NSPLVQV LIGLVCFCCPGMFNALSGMGGGGQ++T  A
Sbjct: 1   MGFQGDEESSAPRVSSKSQFRFNSPLVQVFLIGLVCFCCPGMFNALSGMGGGGQMNTAVA 60

Query: 61  NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAA 120
           +NA+TALYTTF IFGI+GGG+YNILGP++TL + C TYVLYAGSFLYYNH K Q FAI A
Sbjct: 61  DNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCITYVLYAGSFLYYNHFKDQTFAIIA 120

Query: 121 GAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA 180
           GAILG+GAG LWA EGAIMTSYPPP RKGTYISIFWSIFNMGGV+GGLIPFILNY+R  A
Sbjct: 121 GAILGVGAGFLWAGEGAIMTSYPPPRRKGTYISIFWSIFNMGGVVGGLIPFILNYHRTTA 180

Query: 181 VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSN 240
            SVNDGTYIGFMCFMS GAL+SL ILPP RV+RDDG+ CTNI YS+VS E  ++LKLF N
Sbjct: 181 SSVNDGTYIGFMCFMSIGALISLAILPPSRVVRDDGSRCTNITYSSVSVEFVEILKLFLN 240

Query: 241 WKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSF 300
           WKMLLI PA+W+SNFFY+YQFNNVNG+ FNLRTRG NNVFYWGAQM+GSVGIGYI DFSF
Sbjct: 241 WKMLLIVPAAWSSNFFYTYQFNNVNGVLFNLRTRGFNNVFYWGAQMVGSVGIGYILDFSF 300

Query: 301 PTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY 360
            +RR RG  GI +VALLG+ IWAGGLANQL YS      KLDFK+SGSDF GPF LYFC+
Sbjct: 301 KSRRTRGLFGISLVALLGTGIWAGGLANQLRYSRHNVLDKLDFKDSGSDFVGPFFLYFCF 360

Query: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVN 420
           GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQ+DTH VS +SQLVVN
Sbjct: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQIDTHHVSFMSQLVVN 420

Query: 421 WSLTTISYPLLVILVLLAVKDEKSPEEST 449
           WSLT++SYPLL  LV  AVK++K P + T
Sbjct: 421 WSLTSLSYPLLGFLVFFAVKEDKKPTDET 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439027|ref|XP_004137289.1| PREDICTED: UNC93-like protein 1-like [Cucumis sativus]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/447 (76%), Positives = 384/447 (85%)

Query: 1   MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAA 60
           M   G+       ++ KS FRYNSPLVQV LIGLVCFCCPGMFNALSGMGGGGQ+D+T A
Sbjct: 1   MGFEGDEESSSPQILTKSPFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDSTVA 60

Query: 61  NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAA 120
           +NA+TALYTTF IFGI+GGG+YNILGP++TL + CSTYVLYAGSFLYYNH+K Q FAI A
Sbjct: 61  DNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCSTYVLYAGSFLYYNHYKDQTFAIIA 120

Query: 121 GAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA 180
           GAILG+GAG LWA EGAIMTSYPPP RKGTYISIFWSIFNMGGV+GGLIPF+LNY+R  A
Sbjct: 121 GAILGVGAGFLWAGEGAIMTSYPPPGRKGTYISIFWSIFNMGGVVGGLIPFVLNYHRTTA 180

Query: 181 VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSN 240
            SVNDGTYIGFMCFMS GA+ SL ILPP RV+RDDG+ CTNIKYS+VS E  ++LKLF N
Sbjct: 181 SSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIKYSSVSVEFVEILKLFLN 240

Query: 241 WKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSF 300
           WKMLLI PA+W+SNFFY+YQFNNVNG  FNLRTRG NNVFYWGAQMLGS+GIGYI DFSF
Sbjct: 241 WKMLLIVPAAWSSNFFYTYQFNNVNGALFNLRTRGFNNVFYWGAQMLGSIGIGYIMDFSF 300

Query: 301 PTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY 360
            +R+ RG  G+ +VALLG+ IWAGGLANQL YS +K   KLDFK SGS+F GPF LYFC+
Sbjct: 301 KSRKTRGLFGVSLVALLGTGIWAGGLANQLRYSRNKVLDKLDFKESGSEFVGPFFLYFCF 360

Query: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVN 420
           GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD H VS + QLVVN
Sbjct: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDNHHVSFMRQLVVN 420

Query: 421 WSLTTISYPLLVILVLLAVKDEKSPEE 447
           WSLTT+SYPLL++LV LAV D+   E+
Sbjct: 421 WSLTTLSYPLLLVLVFLAVNDDVHDEK 447

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455167|ref|XP_002269909.1| PREDICTED: UNC93-like protein C922.05c [Vitis vinifera] gi|302144007|emb|CBI23112.3| unnamed protein product [Vitis vinifera]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/466 (75%), Positives = 395/466 (84%), Gaps = 7/466 (1%)

Query: 10  KQQMVVG---KSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTA 66
            ++ VVG   KS FRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVD TAANNANTA
Sbjct: 6   DEESVVGLPNKSIFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDATAANNANTA 65

Query: 67  LYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGI 126
           LYTTF IFG+LGGGIYNI GP+ TL + CSTYVLYAGSFLYYNH++HQAFAI AGAILGI
Sbjct: 66  LYTTFAIFGVLGGGIYNIFGPRFTLFAGCSTYVLYAGSFLYYNHYQHQAFAIVAGAILGI 125

Query: 127 GAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDG 186
           GAGLLWA +GAIMTSYPPP RKG+YIS+FWSIFNMGGV+GGLIPFILNYNR+EA SVNDG
Sbjct: 126 GAGLLWAGQGAIMTSYPPPGRKGSYISLFWSIFNMGGVVGGLIPFILNYNRSEAASVNDG 185

Query: 187 TYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLI 246
           TYIGFMCFMS G +L+L IL P RV+RDDG+HCTNIKYS+VSTE  ++LKLF NWKMLL+
Sbjct: 186 TYIGFMCFMSVGTVLTLAILHPSRVVRDDGSHCTNIKYSDVSTEAVEILKLFRNWKMLLM 245

Query: 247 FPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKR 306
            PA+WASNFFY+YQFN+VN   FNLRTRG NNVFYWGAQM+GSVGIGYI DFSF +R+KR
Sbjct: 246 VPAAWASNFFYTYQFNHVNAFLFNLRTRGFNNVFYWGAQMVGSVGIGYILDFSFQSRKKR 305

Query: 307 GFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAM 366
           GFVGI VV LL +AIWAGGLAN L+Y       KLDFK+SGS++AGPFVLYF YGLLDAM
Sbjct: 306 GFVGIGVVGLLATAIWAGGLANHLHYDR-TLTHKLDFKDSGSEYAGPFVLYFSYGLLDAM 364

Query: 367 FQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTI 426
           FQS+VYWVIGALADDSETLSRY GFYKGVQSAG AVAWQ+D H V  LSQL+VNW LT++
Sbjct: 365 FQSLVYWVIGALADDSETLSRYIGFYKGVQSAGGAVAWQIDAHNVKKLSQLIVNWVLTSV 424

Query: 427 SYPLLVILVLLAVKDEKSPEESTNSK---EVTLPAADDGAVGGLTK 469
           SYPLL ILV+LAVKDEK  E   +         P A++   G  +K
Sbjct: 425 SYPLLAILVMLAVKDEKKVETKEDDDAFASAKAPTAEEITGGEFSK 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508384|ref|XP_004163299.1| PREDICTED: UNC93-like protein 1-like [Cucumis sativus]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/457 (75%), Positives = 387/457 (84%), Gaps = 3/457 (0%)

Query: 1   MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAA 60
           M   G+       ++ KS FRYNSPLVQV LIGLVCFCCPGMFNALSGMGGGGQ+D+T A
Sbjct: 1   MGFEGDEESSSPQILTKSPFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDSTVA 60

Query: 61  NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAA 120
           +NA+TALYTTF IFGI+GGG+YNILGP++TL + CSTYVLYAGSFLYYNH+K Q FAI A
Sbjct: 61  DNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCSTYVLYAGSFLYYNHYKDQTFAIIA 120

Query: 121 GAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA 180
           GAILG+GAG LWA EGAIMTSYPPP RKGTYISIFWSIFNMGGV+GGLIPF+LNY+R  A
Sbjct: 121 GAILGVGAGFLWAGEGAIMTSYPPPGRKGTYISIFWSIFNMGGVVGGLIPFVLNYHRTTA 180

Query: 181 VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSN 240
            SVNDGTYIGFMCFMS GA+ SL ILPP RV+RDDG+ CTNIKYS+VS E  ++LKLF N
Sbjct: 181 SSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIKYSSVSVEFVEILKLFLN 240

Query: 241 WKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSF 300
           WKMLLI PA+W+SNFFY+YQFNNVNG  FNLRTRG NNVFYWGAQMLGS+GIGYI DFSF
Sbjct: 241 WKMLLIVPAAWSSNFFYTYQFNNVNGALFNLRTRGFNNVFYWGAQMLGSIGIGYIMDFSF 300

Query: 301 PTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY 360
            +R+ RG  G+ +VALLG+ IWAGGLANQL YS +K   KLDFK SGS+F GPF LYFC+
Sbjct: 301 KSRKTRGLFGVSLVALLGTGIWAGGLANQLRYSRNKVLDKLDFKESGSEFVGPFFLYFCF 360

Query: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVN 420
           GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD H VS + QLVVN
Sbjct: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDNHHVSFMRQLVVN 420

Query: 421 WSLTTISYPLLVILVLLAVKDEKSPEE---STNSKEV 454
           WSLTT+SYPLL++LV LAV D+   E+       KEV
Sbjct: 421 WSLTTLSYPLLLVLVFLAVNDDVHDEKKFIDETRKEV 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439025|ref|XP_004137288.1| PREDICTED: UNC93-like protein 1-like [Cucumis sativus]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/460 (72%), Positives = 371/460 (80%), Gaps = 1/460 (0%)

Query: 1   MSKRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAA 60
           M  +G+       V  KS+FR+NSPLVQV LIGLVCFCCPGMFNALSGMGGGGQ++T  A
Sbjct: 1   MGFQGDEESSAPRVSSKSQFRFNSPLVQVFLIGLVCFCCPGMFNALSGMGGGGQMNTAVA 60

Query: 61  NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAA 120
           +NA+TALYTTF IFGI+GGG+YNILGP++TL + C TYVLYAGSFLYYNH K Q FAI A
Sbjct: 61  DNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCITYVLYAGSFLYYNHFKDQTFAIIA 120

Query: 121 GAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA 180
           GAILG+GAG LWA EGAIMTSYPPP RKGTYISIFWSIFNMGGV+GGLIPFILNY+R  A
Sbjct: 121 GAILGVGAGFLWAGEGAIMTSYPPPGRKGTYISIFWSIFNMGGVVGGLIPFILNYHRTTA 180

Query: 181 VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSN 240
            SVNDGTYIGFMCFMS GAL+SL ILPP RV+RDDG+ CTNI YS+VS E  ++LKLF N
Sbjct: 181 SSVNDGTYIGFMCFMSIGALISLAILPPSRVVRDDGSRCTNITYSSVSVEFVEILKLFLN 240

Query: 241 WKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSF 300
           WKMLLI PA+W+SNFFY+YQFNNVNG  FNLRTRG NNVFYWGAQM+GSVGIGYI DFSF
Sbjct: 241 WKMLLIVPAAWSSNFFYTYQFNNVNGALFNLRTRGFNNVFYWGAQMVGSVGIGYILDFSF 300

Query: 301 PTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY 360
            +RR RG  GI +VALLG+ IWAGGLANQL YS      KLDFK+SGSDF GPF LYFC+
Sbjct: 301 KSRRTRGLFGISLVALLGTGIWAGGLANQLRYSRHNVLDKLDFKDSGSDFVGPFFLYFCF 360

Query: 361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVN 420
           GLLDAMFQSMVYWVIGALADDSETLS     Y         VAWQ+DTH VS +SQLVVN
Sbjct: 361 GLLDAMFQSMVYWVIGALADDSETLSSEIILYL-YNDWETKVAWQIDTHHVSFMSQLVVN 419

Query: 421 WSLTTISYPLLVILVLLAVKDEKSPEESTNSKEVTLPAAD 460
           WSLT++SYPLL  LV  AVK++K P      KE   P  +
Sbjct: 420 WSLTSLSYPLLGFLVFFAVKEDKKPLVFFAVKEDKKPTDE 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464297|ref|XP_003602430.1| UNC93-like protein C922.05c [Medicago truncatula] gi|355491478|gb|AES72681.1| UNC93-like protein C922.05c [Medicago truncatula]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/446 (74%), Positives = 384/446 (86%), Gaps = 6/446 (1%)

Query: 20  FRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGG 79
           FRYNSPL Q+ LIGLVCFCCPGMFNALSGMGGGGQV+ TA+NNA TALYTTF +FGILGG
Sbjct: 24  FRYNSPLSQIILIGLVCFCCPGMFNALSGMGGGGQVNATASNNALTALYTTFAVFGILGG 83

Query: 80  GIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM 139
           GIYNILGP +TL + CSTYVLYAGSFLYYNH +HQAFAI AGA+LGIGAGLLWAA+GAIM
Sbjct: 84  GIYNILGPHLTLFAGCSTYVLYAGSFLYYNHKQHQAFAIVAGALLGIGAGLLWAAQGAIM 143

Query: 140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNR-NEAVSVNDGTYIGFMCFMSAG 198
           TSYPP NRKGTYISIFWSIFNMGGVIGGLIPFILNYNR ++A +VNDGTYIGFM FMS G
Sbjct: 144 TSYPPMNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRGDQAATVNDGTYIGFMAFMSLG 203

Query: 199 ALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYS 258
            +LSL ILP  +V+RDDGT CTN+ YSNV+TE  ++LKLF NWKMLL+ PA+W+SNFFY+
Sbjct: 204 TVLSLTILPASKVVRDDGTKCTNMLYSNVATECVEILKLFYNWKMLLMIPAAWSSNFFYT 263

Query: 259 YQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLG 318
           YQFN+VN  QF+LRTRGLNNVFYWGAQM+GS+GIGY  DFSF +R+KRG VGI VVA+LG
Sbjct: 264 YQFNHVNKTQFSLRTRGLNNVFYWGAQMIGSIGIGYTMDFSFKSRKKRGIVGISVVAVLG 323

Query: 319 SAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGAL 378
           S IW G LANQ+ + H K    LDFK SGSDFAGPFVLYF +GLLDAMFQSMVYW IGAL
Sbjct: 324 SIIWGGALANQIKHKHGK---VLDFKESGSDFAGPFVLYFSFGLLDAMFQSMVYWSIGAL 380

Query: 379 ADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLA 438
           A+DSE LSRY+GFYKG+QSAGAAVAWQ+D H VS ++QL+VNW LTT+SYPLL++L++LA
Sbjct: 381 ANDSEVLSRYTGFYKGIQSAGAAVAWQIDNHNVSPMAQLIVNWVLTTLSYPLLLVLMVLA 440

Query: 439 VKDEKSPEESTNSKEVTLPAADDGAV 464
           VK+  S EE     +   P+ ++G+V
Sbjct: 441 VKE--SNEEVEEPVKQVAPSDNNGSV 464

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394560|ref|NP_564043.1| transmembrane transporter-like protein [Arabidopsis thaliana] gi|18394562|ref|NP_564044.1| transmembrane transporter-like protein [Arabidopsis thaliana] gi|384955520|sp|Q56WD3.2|UN931_ARATH RecName: Full=UNC93-like protein 1 gi|384955526|sp|Q8LG53.2|UN932_ARATH RecName: Full=UNC93-like protein 2 gi|9719716|gb|AAF97818.1|AC034107_1 ESTs gb|AV518228, gb|AV519045, gb|AV524928, gb|AV530358, gb|AV559044 come from this gene [Arabidopsis thaliana] gi|9719717|gb|AAF97819.1|AC034107_2 ESTs gb|AV518228, gb|AV519045, gb|AV524928, gb|AV530358, gb|AV559044 come from this gene [Arabidopsis thaliana] gi|16323169|gb|AAL15319.1| At1g18010/T10F20_2 [Arabidopsis thaliana] gi|25090089|gb|AAN72225.1| At1g18010/T10F20_2 [Arabidopsis thaliana] gi|50253502|gb|AAT71953.1| At1g18000 [Arabidopsis thaliana] gi|51970856|dbj|BAD44120.1| hypothetical protein [Arabidopsis thaliana] gi|332191541|gb|AEE29662.1| transmembrane transporter-like protein [Arabidopsis thaliana] gi|332191542|gb|AEE29663.1| transmembrane transporter-like protein [Arabidopsis thaliana]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/436 (74%), Positives = 371/436 (85%), Gaps = 1/436 (0%)

Query: 6   ESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANT 65
           +  G ++    ++++R+NSPL QV L+G VCFCCPGMFNALSGMGGGGQVD TAANNANT
Sbjct: 13  KHGGGEENKSPENKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANT 72

Query: 66  ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILG 125
           A+YT FT+FG+LGGG YN+LGP++TL + CSTYVLYAGSFLYYNHH HQAFAI AGA+LG
Sbjct: 73  AVYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLG 132

Query: 126 IGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVND 185
            GAGLLWA EGA+MTSYPPP+RKGTYI++FWSIFN+GGVIGGLIPFILNY R+ A SVND
Sbjct: 133 CGAGLLWAGEGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVND 192

Query: 186 GTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLL 245
            TYI FMCFM AG LLS  ILP   VIR+DG+ C+ +KYS  STE   VL+LF + KMLL
Sbjct: 193 STYIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLL 252

Query: 246 IFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRK 305
           I PA+WASNFFYSYQFNNVNGL FNLRTRG NNVFYWGAQM GS+ IGY+ DFSF +RR 
Sbjct: 253 IVPAAWASNFFYSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRA 312

Query: 306 RGFVGIVVVALLGSAIWAGGLANQLNYSHDK-PPAKLDFKNSGSDFAGPFVLYFCYGLLD 364
           RGF GI +VA++G+ IWAGGLANQ  YS DK P  KLDFK+SG +FAGPFVLY  YGLLD
Sbjct: 313 RGFTGISLVAVIGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLD 372

Query: 365 AMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLT 424
           AM+QSMVYW+IGALADDS+TLSRYSGFYKGVQSAGAAVAWQVDT KV L+SQL+VNWSLT
Sbjct: 373 AMYQSMVYWLIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLT 432

Query: 425 TISYPLLVILVLLAVK 440
           T+SYPLLV+LV   VK
Sbjct: 433 TVSYPLLVLLVYFYVK 448

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500815|ref|XP_003519226.1| PREDICTED: UNC93-like protein C922.05c-like [Glycine max]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/423 (78%), Positives = 374/423 (88%)

Query: 20  FRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGG 79
           FRYNSPLVQV LIG++CFCCPGMFNALSGMGGGGQVD TA+NN+ TALYTTF IFGILGG
Sbjct: 28  FRYNSPLVQVILIGVICFCCPGMFNALSGMGGGGQVDHTASNNSLTALYTTFAIFGILGG 87

Query: 80  GIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM 139
           GIYNILGP +TL++ CS+YVLY  SFLYYNHH HQAF I AGA+LG+GAGLLWAA+GAIM
Sbjct: 88  GIYNILGPHLTLLAGCSSYVLYTSSFLYYNHHHHQAFVILAGALLGVGAGLLWAAQGAIM 147

Query: 140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGA 199
           TSYPP NRKGTYISIFWSIFNMGGVIGGLIPFILNY+R+EA SVNDGTYIGFMCFMS G 
Sbjct: 148 TSYPPTNRKGTYISIFWSIFNMGGVIGGLIPFILNYHRSEAASVNDGTYIGFMCFMSLGT 207

Query: 200 LLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSY 259
           LLSL ILP  +V+RDDG+ CTN+ Y++VSTE  +VLKLFSNWK+LL+ PA+W+SN FY Y
Sbjct: 208 LLSLAILPACKVVRDDGSRCTNMFYTDVSTECVEVLKLFSNWKVLLMVPAAWSSNCFYPY 267

Query: 260 QFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGS 319
           QFN+VNG  FNLRTRGLN+VFYWGAQMLGSVGIGYI DFSF  RR RG VG++VV +LG+
Sbjct: 268 QFNDVNGALFNLRTRGLNSVFYWGAQMLGSVGIGYIMDFSFKRRRVRGMVGVIVVGVLGT 327

Query: 320 AIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALA 379
            IW GGL NQL YS +  P KLDF+ SGS FAGPFVLYF +GLLDAMFQS+VYWVIGALA
Sbjct: 328 VIWGGGLVNQLRYSSNDLPEKLDFEQSGSHFAGPFVLYFSFGLLDAMFQSLVYWVIGALA 387

Query: 380 DDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAV 439
           DDS+ LSRYSGF+KG+QSAGAAVAWQVD HKVS +SQL+VNW LTTISYPLL +LV+LAV
Sbjct: 388 DDSQILSRYSGFFKGIQSAGAAVAWQVDEHKVSFMSQLIVNWVLTTISYPLLFVLVMLAV 447

Query: 440 KDE 442
           KD+
Sbjct: 448 KDQ 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
TAIR|locus:505006129	459	AT1G18000 "AT1G18000" [Arabido	0.921	0.945	0.652	5.1e-154
TAIR|locus:2194030	459	AT1G18010 "AT1G18010" [Arabido	0.921	0.945	0.652	5.1e-154
CGD|CAL0004428	509	NGT1 [Candida albicans (taxid:	0.942	0.872	0.358	5.7e-75
UNIPROTKB|Q5A7S4	509	NGT1 "Putative uncharacterized	0.942	0.872	0.358	5.7e-75
ASPGD|ASPL0000043316	508	AN1427 [Emericella nidulans (t	0.944	0.875	0.340	2.3e-71
UNIPROTKB|G4N627	516	MGG_06605 "Uncharacterized pro	0.910	0.831	0.355	1.3e-70
POMBASE|SPAC922.05c	504	SPAC922.05c "membrane transpor	0.864	0.807	0.355	1.3e-66
ASPGD|ASPL0000012275	482	AN8127 [Emericella nidulans (t	0.963	0.941	0.328	1.4e-64
POMBASE|SPAC6F6.04c	489	SPAC6F6.04c "membrane transpor	0.893	0.860	0.269	5.3e-40
ASPGD|ASPL0000037549	467	AN2699 [Emericella nidulans (t	0.891	0.899	0.256	9.2e-36

TAIR|locus:505006129 AT1G18000 "AT1G18000" [Arabidopsis thaliana (taxid:3702)]

 Score = 1502 (533.8 bits), Expect = 5.1e-154, P = 5.1e-154
 Identities = 285/437 (65%), Positives = 328/437 (75%)

Query:    17 KSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXXXXLYXXXXXXXX 76
             ++++R+NSPL QV L+G VCFCCPGMFNALSGMGGGGQVD          +Y        
Sbjct:    24 ENKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVFGL 83

Query:    77 XXXXXXXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXXXXXXXXXXXXXX 136
                       P++TL + CSTYVLYAGSFLYYNHH HQ                      
Sbjct:    84 LGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEG 143

Query:   137 XXMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMS 196
               MTSYPPP+RKGTYI++FWSIFN+GGVIGGLIPFILNY R+ A SVND TYI FMCFM 
Sbjct:   144 AVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMF 203

Query:   197 AGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFF 256
             AG LLS  ILP   VIR+DG+ C+ +KYS  STE   VL+LF + KMLLI PA+WASNFF
Sbjct:   204 AGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFF 263

Query:   257 YSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVAL 316
             YSYQFNNVNGL FNLRTRG NNVFYWGAQM GS+ IGY+ DFSF +RR RGF GI +VA+
Sbjct:   264 YSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAV 323

Query:   317 LGSAIWAGGLANQLNYSHDK-PPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVI 375
             +G+ IWAGGLANQ  YS DK P  KLDFK+SG +FAGPFVLY  YGLLDAM+QSMVYW+I
Sbjct:   324 IGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLI 383

Query:   376 GALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILV 435
             GALADDS+TLSRYSGFYKGVQSAGAAVAWQVDT KV L+SQL+VNWSLTT+SYPLLV+LV
Sbjct:   384 GALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLV 443

Query:   436 LLAVKDEKSPEESTNSK 452
                VK++   ++ +N K
Sbjct:   444 YFYVKNDN--DDDSNDK 458

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2194030 AT1G18010 "AT1G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1502 (533.8 bits), Expect = 5.1e-154, P = 5.1e-154
 Identities = 285/437 (65%), Positives = 328/437 (75%)

Query:    17 KSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXXXXLYXXXXXXXX 76
             ++++R+NSPL QV L+G VCFCCPGMFNALSGMGGGGQVD          +Y        
Sbjct:    24 ENKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVFGL 83

Query:    77 XXXXXXXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXXXXXXXXXXXXXX 136
                       P++TL + CSTYVLYAGSFLYYNHH HQ                      
Sbjct:    84 LGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEG 143

Query:   137 XXMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMS 196
               MTSYPPP+RKGTYI++FWSIFN+GGVIGGLIPFILNY R+ A SVND TYI FMCFM 
Sbjct:   144 AVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMF 203

Query:   197 AGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFF 256
             AG LLS  ILP   VIR+DG+ C+ +KYS  STE   VL+LF + KMLLI PA+WASNFF
Sbjct:   204 AGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFF 263

Query:   257 YSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVAL 316
             YSYQFNNVNGL FNLRTRG NNVFYWGAQM GS+ IGY+ DFSF +RR RGF GI +VA+
Sbjct:   264 YSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAV 323

Query:   317 LGSAIWAGGLANQLNYSHDK-PPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVI 375
             +G+ IWAGGLANQ  YS DK P  KLDFK+SG +FAGPFVLY  YGLLDAM+QSMVYW+I
Sbjct:   324 IGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLI 383

Query:   376 GALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILV 435
             GALADDS+TLSRYSGFYKGVQSAGAAVAWQVDT KV L+SQL+VNWSLTT+SYPLLV+LV
Sbjct:   384 GALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLV 443

Query:   436 LLAVKDEKSPEESTNSK 452
                VK++   ++ +N K
Sbjct:   444 YFYVKNDN--DDDSNDK 458

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

CGD|CAL0004428 NGT1 [Candida albicans (taxid:5476)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 164/457 (35%), Positives = 251/457 (54%)

Query:     5 GESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXX 64
             G    KQ  ++G ++FR++S + Q+ L+  V F  PGMFNALSG+G     D        
Sbjct:    42 GSWIDKQINILG-AKFRFSSAMCQIVLLAFVVFLTPGMFNALSGIGAAIS-DKKTADLAN 99

Query:    65 XXLYXXXXXXXXXXXXXXXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXX 124
               LY                   +++L+     Y +YAGS L +NH++++          
Sbjct:   100 TALYVTFSTVGFFAGTICNVIGVKMSLVFGGFGYAIYAGSLLSFNHNENKGFVIFAGAFL 159

Query:   125 XXXXXXXXXXXXXXMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVN 184
                           + SYP    KG  I +FW IFN+G VIG +IP   N + N+  S +
Sbjct:   160 GFCASLLWAAQGTIIMSYPTEQTKGRAIMVFWVIFNLGAVIGSIIPLAENMH-NQGSSAS 218

Query:   185 DGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLK-LFSNWKM 243
             DGT+I F+  M  G++L+  +LP  +V + DGT      +     E+  + + L    K+
Sbjct:   219 DGTFIAFIILMICGSVLANFMLPISKVWKSDGTRVMTKTHPYWKDELIGLGRTLIKEPKI 278

Query:   244 LLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTR 303
             LL+FP  +ASN+FY+YQFNNVN  +FNLRTR LN++ YW AQM G++ +GYI DF    R
Sbjct:   279 LLMFPMFFASNWFYTYQFNNVNYGRFNLRTRSLNSLLYWLAQMFGAIVLGYILDFKKFKR 338

Query:   304 RKRGFVGIVVVALLGSAIWAGGLANQLNYSHD----KPP--AKLDFKNSGSDFAGPFVLY 357
               R  +G  ++ +   AIW GGL  Q++++ +    KPP  ++LDFK+    + GP  LY
Sbjct:   339 STRAKIGWAILFVTSLAIWGGGLKFQMSFTREEVESKPPKISQLDFKDGA--YIGPMFLY 396

Query:   358 FCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQL 417
               YG+ DA+FQ+   WV+GA++++ +  + Y+GFYKG+QSAGAA+AW++D+ +V  +S  
Sbjct:   397 IFYGVFDAIFQTYTIWVLGAMSNNPKKTALYAGFYKGIQSAGAAIAWRLDSLEVKYMSLF 456

Query:   418 VVNWSLTTISYPLLVILVLLAVKDEKSPEESTNSKEV 454
               +W L   S  L + L+   +KD  + E+  N  EV
Sbjct:   457 ASSWGLVQGSLVLAIPLIFFMIKDHTALEDD-NMGEV 492

GO:0015572 "N-acetylglucosamine transmembrane transporter activity" evidence=ISS;IDA;IMP

GO:0015764 "N-acetylglucosamine transport" evidence=ISS;IMP;IDA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5A7S4 NGT1 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 164/457 (35%), Positives = 251/457 (54%)

Query:     5 GESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXX 64
             G    KQ  ++G ++FR++S + Q+ L+  V F  PGMFNALSG+G     D        
Sbjct:    42 GSWIDKQINILG-AKFRFSSAMCQIVLLAFVVFLTPGMFNALSGIGAAIS-DKKTADLAN 99

Query:    65 XXLYXXXXXXXXXXXXXXXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXX 124
               LY                   +++L+     Y +YAGS L +NH++++          
Sbjct:   100 TALYVTFSTVGFFAGTICNVIGVKMSLVFGGFGYAIYAGSLLSFNHNENKGFVIFAGAFL 159

Query:   125 XXXXXXXXXXXXXXMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVN 184
                           + SYP    KG  I +FW IFN+G VIG +IP   N + N+  S +
Sbjct:   160 GFCASLLWAAQGTIIMSYPTEQTKGRAIMVFWVIFNLGAVIGSIIPLAENMH-NQGSSAS 218

Query:   185 DGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLK-LFSNWKM 243
             DGT+I F+  M  G++L+  +LP  +V + DGT      +     E+  + + L    K+
Sbjct:   219 DGTFIAFIILMICGSVLANFMLPISKVWKSDGTRVMTKTHPYWKDELIGLGRTLIKEPKI 278

Query:   244 LLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTR 303
             LL+FP  +ASN+FY+YQFNNVN  +FNLRTR LN++ YW AQM G++ +GYI DF    R
Sbjct:   279 LLMFPMFFASNWFYTYQFNNVNYGRFNLRTRSLNSLLYWLAQMFGAIVLGYILDFKKFKR 338

Query:   304 RKRGFVGIVVVALLGSAIWAGGLANQLNYSHD----KPP--AKLDFKNSGSDFAGPFVLY 357
               R  +G  ++ +   AIW GGL  Q++++ +    KPP  ++LDFK+    + GP  LY
Sbjct:   339 STRAKIGWAILFVTSLAIWGGGLKFQMSFTREEVESKPPKISQLDFKDGA--YIGPMFLY 396

Query:   358 FCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQL 417
               YG+ DA+FQ+   WV+GA++++ +  + Y+GFYKG+QSAGAA+AW++D+ +V  +S  
Sbjct:   397 IFYGVFDAIFQTYTIWVLGAMSNNPKKTALYAGFYKGIQSAGAAIAWRLDSLEVKYMSLF 456

Query:   418 VVNWSLTTISYPLLVILVLLAVKDEKSPEESTNSKEV 454
               +W L   S  L + L+   +KD  + E+  N  EV
Sbjct:   457 ASSWGLVQGSLVLAIPLIFFMIKDHTALEDD-NMGEV 492

GO:0005886 "plasma membrane" evidence=IDA

GO:0015572 "N-acetylglucosamine transmembrane transporter activity" evidence=IMP

GO:0015764 "N-acetylglucosamine transport" evidence=IDA

ASPGD|ASPL0000043316 AN1427 [Emericella nidulans (taxid:162425)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 153/449 (34%), Positives = 223/449 (49%)

Query:    22 YNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXXXXLYXXXXXXXXXXXXX 81
             Y SP  Q+ L+  VCF CPGM+N+++G+GG GQ++           Y             
Sbjct:    45 YASPQFQLVLVAFVCFLCPGMYNSVNGLGGAGQLNHSDISKSNTATYSTFAVVGFFAGSI 104

Query:    82 XXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXXXXXXXXXXXXXXXXMTS 141
                   ++TL      Y LY  + L YNH  +                         M +
Sbjct:   105 ANRIGLRLTLSFGGFGYTLYVAALLCYNHTYNSGFLIFAGALLGLCAGLLWCAQGAVMMA 164

Query:   142 YPPPNRKGTYISIFWSIFNMGGVIGGLIPFILN-YNRNEAVSVNDGTYIGFMCFMSAGAL 200
             YP  N KG +ISIFW IFN+GGVIGGLIP   N +N + A SVNDGTYI FM  M  G L
Sbjct:   165 YPGENEKGKFISIFWVIFNLGGVIGGLIPLGQNIHNSDSAGSVNDGTYIAFMVLMVLGFL 224

Query:   201 LSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLK-LFSNWKMLLIFPASWASNFFYSY 259
             L+  ++    ++R DGT    IK  +  +E+  + + L ++W ++  FP   ASN+FYSY
Sbjct:   225 LAWGLVDSKNIVRKDGTRVIAIKNPSWKSELLGLYETLLTDWYIVAFFPMFLASNWFYSY 284

Query:   260 QFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGS 319
              FN +NG  F  R   LN++ YW  QM+G+   G I D     R  R  +  V++  +  
Sbjct:   285 HFNAINGSYFVPRAAALNSILYWAMQMIGAFCFGLILDLKSLKRPARAKLVWVLLFTITM 344

Query:   320 AIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALA 379
              +W GG A Q  Y+ +      D+  SG  + GP  LY  YG  DA FQ+  YW +G L+
Sbjct:   345 GVWGGGYAFQKTYTRETAGRSKDWNQSG--YIGPMFLYMFYGFYDAAFQTCAYWFMGCLS 402

Query:   380 DDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAV 439
             ++S  L+ ++GFYKG+QSAGAA+ W +D ++   ++     W +   S  +   ++   +
Sbjct:   403 NNSRKLANFAGFYKGIQSAGAAITWALDFNETPYMNMFASCWGILCGSLLIASPIIFFKI 462

Query:   440 KDEKSPEESTNSKEVTLPAADDGAVGGLT 468
             KD    EE     + T+       VG +T
Sbjct:   463 KDHTDLEEDLKFSDETVADVTGIEVGDVT 491

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G4N627 MGG_06605 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 156/439 (35%), Positives = 221/439 (50%)

Query:    10 KQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXXXXLYX 69
             K+  + G S   Y SP VQ+ ++ +VCF CPGMFNALSG+G GG  +          LY 
Sbjct:    49 KKFRIAG-SEVWYASPKVQLLVVSMVCFLCPGMFNALSGLGAGGLENDTAQAQANTALYS 107

Query:    70 XXXXXXXXXXXXXXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXXXXXXX 129
                               ++T+      Y +Y+ SFL Y H K+                
Sbjct:   108 TFAVVGFFSGTFANRLGIKLTMAIGGLGYCVYSASFLCYVHTKNIGFVIFAGALLGVCAG 167

Query:   130 XXXXXXXXXMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYI 189
                      M SYPP + KG YIS FW IFN+G V+G  IP   N N N    V DGTY+
Sbjct:   168 LLWCGQGAIMMSYPPESHKGRYISWFWIIFNLGAVVGSFIPLGQNIN-NYTGGVTDGTYV 226

Query:   190 GFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSN--WKMLLIF 247
             GF+  M  GALL+L +   G VIRDDGT    +K  +  +E   +  +     W ++ +F
Sbjct:   227 GFIVLMLVGALLALFLCNSGSVIRDDGTKVIGMKNPSWLSEFKGLWSVLIEEPW-IVALF 285

Query:   248 PASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRG 307
             P  +ASN FY+YQ NN+NG  FN+RTR LN++ YW AQ++G++  GY  DF    R  R 
Sbjct:   286 PMFFASNIFYTYQLNNMNGAMFNVRTRSLNSLLYWIAQIIGAIIFGYALDFPGVRRSIRA 345

Query:   308 FVGIVVVALLGSAIWAGGLANQLNYSH-----DKPPAKLDFKNSGSDFAGPFVLYFCYGL 362
              V +  +  L   IW GG A Q           +   K+D+ + G  + GP  L+  YG 
Sbjct:   346 RVSLGALTALTFIIWGGGWAFQSKQPSRAVVSSEAHRKIDWTDGGEAYIGPMFLFMAYGF 405

Query:   363 LDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWS 422
              DA++Q+ +YW +GAL++     +  +GFYKG+QSAGAAV W++D+  V   +     W 
Sbjct:   406 FDAIWQTSIYWYMGALSNSGRKAANLAGFYKGIQSAGAAVFWRLDSLGVEFNTIFGATWG 465

Query:   423 LTTISYPLLVILVLLAVKD 441
             +          ++ L +KD
Sbjct:   466 ILAACLIFAAPIIWLKIKD 484

GO:0005737 "cytoplasm" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=ISS

POMBASE|SPAC922.05c SPAC922.05c "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 147/414 (35%), Positives = 219/414 (52%)

Query:    15 VGKSR-FRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXXXXLYXXXXX 73
             +G+ +   Y S L Q  ++  VCF CPGMFNALSG+GGGG+V+          LY     
Sbjct:    48 IGRFKSLAYGSALTQTIIVSWVCFLCPGMFNALSGLGGGGEVNADVANDANVALYSTFAG 107

Query:    74 XXXXXXXXXXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXXXXXXXXXXX 133
                           ++TL    + Y +Y  S L Y H  ++                   
Sbjct:   108 LGFFAGSICNLIGVKLTLAIGGTGYSVYTASLLCYKHVYNRGFVIFGGCYLGLTAGMLWA 167

Query:   134 XXXXXMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMC 193
                  + SYP    K  YI+IFW IFN+G VIG ++P     + +   SV DGTY GF+ 
Sbjct:   168 AQGAVIMSYPREENKARYIAIFWGIFNLGAVIGSIVPLAQTMH-SSVNSVGDGTYAGFIV 226

Query:   194 FMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLK-LFSNWKMLLIFPASWA 252
              M+ G+ L+L ++ P + +++DG      K      E+  +++ L+  + +LL+FP  ++
Sbjct:   227 LMAVGSALALFMVSPEKTVKEDGKFVHIEKSMGWKKELLGLVQTLYKEYWVLLLFPMFFS 286

Query:   253 SNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIV 312
             SN+F +YQFN+ N   FN+RTR LNN+ YW AQ++GS       D+    R  R  VG  
Sbjct:   287 SNWFTTYQFNDFNLAYFNIRTRSLNNLLYWFAQIMGSAVAALFLDWQRFNRVIRARVGWG 346

Query:   313 VVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG---SDFAGPFVLYFCYGLLDAMFQS 369
             +V +L   IW GGLA QL Y+  K  A+ DF  +      + G   LY  YG+LDA+FQS
Sbjct:   347 LVFVLICVIWGGGLAFQLKYTR-KSVAESDFVVTDFTHRGYTGYAFLYIFYGMLDAIFQS 405

Query:   370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSL 423
               YW+IG+L++D+  L+ Y GFYK +QSAGAA+ +++DT  +  ++     W+L
Sbjct:   406 YAYWIIGSLSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYMNYFASCWAL 459

GO:0005737 "cytoplasm" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

ASPGD|ASPL0000012275 AN8127 [Emericella nidulans (taxid:162425)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 156/475 (32%), Positives = 236/475 (49%)

Query:     4 RGESAGKQQM-VVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXX 62
             R  +AG+++  +V ++   Y  P  Q+ LI  +CFCCPGM+NAL+G+GG GQVD      
Sbjct:    13 RTVAAGQEERSIVYRT---YTHPWFQIFLISFICFCCPGMYNALTGLGGSGQVDPTVAAN 69

Query:    63 XXXXLYXXXXXXXXXXXX-XXXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXX 121
                 L                    P++ L+    TY LYAGS L +N   +        
Sbjct:    70 ATVALLSATAGTALFVVGPIFDRVGPRICLLFGGWTYPLYAGSLLCFNRTGNGAFVIASG 129

Query:   122 XXXXXXXXXXXXXXXXXMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAV 181
                              MT+Y   ++KG  I+ FW IFN+GG +G L  F LNY+     
Sbjct:   130 AILGIGASFLWVSQGAIMTTYVRESQKGRAIAAFWIIFNLGGGVGSLASFGLNYHSTSG- 188

Query:   182 SVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQ---VLKLF 238
             +V+DGTYI  +  M+ G LL ++I PP  V  ++    +  + + V TE       L+L 
Sbjct:   189 TVSDGTYIALLILMAVGWLLGMLICPPSAVRLEELQQSSRTQTAVVETEKPNWKSTLRLA 248

Query:   239 S----NWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGY 294
             +    +W++L + P  + +N FYSYQ N VNG+ FN+RTR LN+  YW AQMLG + +G 
Sbjct:   249 ARTILDWRVLCMLPLFFCANVFYSYQQNIVNGMTFNIRTRSLNSALYWLAQMLGGLVMGL 308

Query:   295 IFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPP--AKLDFK-NSGSDFA 351
             I D    TR  R   G + +A+ G AIW GG A +  +S D+     K D     G+   
Sbjct:   309 ILDIPALTRPGRARAGWLFLAVTGLAIWGGGYAFE-KWSSDRLAHGLKQDIDYTQGTVST 367

Query:   352 GPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKV 411
             GP  LY  YG  DA +QS  YW++GA ++D    +   G YK  QS G A+AW+++    
Sbjct:   368 GPIFLYIFYGAFDAFWQSYCYWLMGARSNDPAVAAVLVGAYKTFQSTGGAMAWRINALDK 427

Query:   412 SLLSQLVVNWSLT----TISYPLLVILVLLAVKDEKSPEESTNSKEVTLPAADDG 462
               ++Q  ++W L      ++ P ++ +   +  D +   +    +E T+ A+  G
Sbjct:   428 PAMTQFAMDWGLCMGALVVAIPAVLTVTKTSTVDAEVAHQGEKGEEKTMSASVKG 482

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC6F6.04c SPAC6F6.04c "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 118/438 (26%), Positives = 192/438 (43%)

Query:    35 VCFCCPGMFNALSGMG-GGGQVDXXXXXXXXXXL-YXXXXXXXXXXXXXXXXXXPQVTLI 92
             + FCCPG++ A++G+G GGG  D          L Y                  P+  L 
Sbjct:    34 ILFCCPGIYLAVTGLGAGGGHPDAYHMADVTNSLLYALFTVCGWAGGPILKYLGPRWALA 93

Query:    93 SACSTYVLYAGSFLYYNHHKHQXXXXXXXXXXXXXXXXXXXXXXXXMTSYPPPNRKGTYI 152
                + Y +Y G   Y+++   Q                          SY   N+K  +I
Sbjct:    94 LGATGYPIYIGGLWYFDNTGKQGFTIFTGAYEGIAAGLLWASTAYISLSYSCANQKSQFI 153

Query:   153 SIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP-PGRV 211
             +  W+I   G  +G  I F +NY+ + +  V    YI F+  M+   LL+++ +  P  V
Sbjct:   154 ATQWTILAFGSTVGSFIAFGINYH-STSTGVPMAVYIIFIIIMACAVLLAILFIKSPSDV 212

Query:   212 IRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNL 271
              + DGT   +        E+  + +   +W++L + PAS+AS    ++Q +++N   F+L
Sbjct:   213 RKSDGTSALSPSNKTFGQELWGLFEAAKDWRLLCLLPASFASQSTIAWQ-SHLNSYYFSL 271

Query:   272 RTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLN 331
             RTR LNNV +W  Q         I D     RR RG +G+ + A++  A  +G L   ++
Sbjct:   272 RTRSLNNVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVS 331

Query:   332 YS---HDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRY 388
                  HD  P  LD+   G  + G  VLY   G+        V W I  L+ D +  +RY
Sbjct:   332 KHIDLHDTSP-DLDWTQRG--YGGALVLYLLMGIQYGSSIVSVQWCISLLSSDPDKYARY 388

Query:   389 SGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVK--DEKSPE 446
             +G YKG Q+AG  V++ +D   VS L Q ++ +    +     +I+  +  K  D  S +
Sbjct:   389 AGLYKGTQAAGMCVSFGIDAAGVSFLGQGIIYFIFLFVMCASQLIMTSIFGKETDRLSTK 448

Query:   447 ES-TNSKEV---TLPAAD 460
             E  T+ K      +P+ D
Sbjct:   449 EHFTDDKSYIDGVMPSTD 466

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IC

ASPGD|ASPL0000037549 AN2699 [Emericella nidulans (taxid:162425)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 112/436 (25%), Positives = 185/436 (42%)

Query:    22 YNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDXXXXXXXXXXLYXXXXXXXXXXXXX 81
             + S L Q+  +GL  FC PG+++A++G+G GG             LY             
Sbjct:    39 FRSTLFQILTVGLCAFCAPGIWSAMNGLGVGGSQSPNLVNAANALLYAFMTVTCFLGPFL 98

Query:    82 XXXXXPQVTLISACSTYVLYAGSFLYYNHHKHQXXXXXXXXXXXXXXXXXXXXXXXXM-T 140
                   + TL      Y LYA   LY N+                            + T
Sbjct:    99 TNLVGFRYTLSLGSIGYPLYAAG-LYLNNRTGATWLVYLGSVTCGISAGFFWSVEGAIAT 157

Query:   141 SYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGAL 200
              YP   ++G YI+ +++  N G +IGG I   +N N N+   V   TY+GF+     G L
Sbjct:   158 GYPEDRKRGRYIATWFTFRNFGNIIGGAISLGINVNLNQQGQVGYQTYLGFIAIQCLGCL 217

Query:   201 LSLVILPPGRVIRDDGTH-CTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSY 259
             + L++  P +V+RDDGT    +    +  TE   + K   +  +LL+ P  W   +  +Y
Sbjct:   218 IGLLLSNPEKVVRDDGTEIAASTDTIHWKTEAKAMWKRGKSKPILLLTPLFWYFGWVQAY 277

Query:   260 QFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGI---GYIFDFSFPTRRK-RGFVGIVVVA 315
                 +    F +R+R L +     + ++G++     G + D  +   RK R      ++A
Sbjct:   278 PGTYL-ATYFTIRSRALGSFL---SAIVGTIATWLGGSLVDIPWTLNRKHRALATWTLIA 333

Query:   316 LLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVI 375
              L S  W   +  Q  Y H  P   LD+ +  + F   F +Y    L   + ++ +YW I
Sbjct:   334 ALNSTTWIWAVIIQNEYRHTNPV--LDWDDQRT-FGRGFGIYLFERLSVGIVENYIYWCI 390

Query:   376 GALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILV 435
             G L+D      RYS   +G+++AG AV + V     +L+    +N+ L   + P+     
Sbjct:   391 GNLSDSPGEQIRYSSLLRGIETAGVAVGFGVQAVPTTLIVTAGINFGLWFFALPISFWAT 450

Query:   436 LLAVKDEKSPEESTNS 451
             L+ V+  K  E + NS
Sbjct:   451 LMVVR--KFEEAAWNS 464

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LG53	UN932_ARATH	No assigned EC number	0.7454	0.9235	0.9477	yes	no
Q9URX1	YLX5_SCHPO	No assigned EC number	0.4036	0.9023	0.8432	yes	no
Q56WD3	UN931_ARATH	No assigned EC number	0.7454	0.9235	0.9477	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	471
pfam05978	157	pfam05978, UNC-93, Ion channel regulatory protein	4e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-04

>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 67  LYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGI 126
           +Y  FT+  +    + +IL P+  ++     Y  +   FL+ N      +   + A+LG+
Sbjct: 46  IYFFFTVSCLFAPSVVDILTPKWAMVIGALCYASFQLGFLFLN----SYYLYFSSALLGV 101

Query: 127 GAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL 173
           GA  LW  +G  +T            SI W+I     + GG+  F +
Sbjct: 102 GAAFLWTGQGQYLTENSTRETIERNTSIQWAIGKSSLIFGGIFLFFV 148

This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein. Length = 157

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 66/416 (15%), Positives = 128/416 (30%), Gaps = 72/416 (17%)

Query: 26  LVQVCLIGLVCFCCPGMFN-ALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNI 84
           L+ + L   +     G+ + AL  +     +  + A    +A    + +  +L G + + 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 85  LGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP 144
            G +  L+      +L+A   L           +    +LG+G G L+ A  A++  + P
Sbjct: 61  FGRRRVLLLGL---LLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117

Query: 145 PNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLV 204
           P  +G  + +F + F +G ++G L+  +L              ++         ALL L 
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLGGLLA-----ESLGWRWLFLILAILGLLLALLLLF 172

Query: 205 ILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNV 264
           +L    ++                               L  F  S+      +Y    +
Sbjct: 173 LLRLLLLL------------------------------ALAFFLLSFGYYGLLTYLPLYL 202

Query: 265 -NGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWA 323
              L  +    GL    +    +LG++  G + D     R  R  + +++  LL +    
Sbjct: 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD-----RLGRRRLLLLIGLLLAALGLL 257

Query: 324 GGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSE 383
                                      A   V     G         +  +   LA   E
Sbjct: 258 LLALA-------------------PSLALLLVALLLLGFGLGFAFPALLTLASELA-PPE 297

Query: 384 TLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAV 439
                SG +    S G A+          L   L+       +   L  + +L A+
Sbjct: 298 ARGTASGLFNTFGSLGGALG-------PLLAGLLLDTGGYGGVFLILAALALLAAL 346

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 30/165 (18%), Positives = 60/165 (36%)

Query: 3   KRGESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANN 62
            +        +V        +  L  +  + L  F    +   L        +    A  
Sbjct: 182 PKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGL 241

Query: 63  ANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGA 122
                     I  +L G + + LG +  L+ A    +L A      +  +   + + A  
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALL 301

Query: 123 ILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGG 167
           +LG GAGL++ A  A+++   P   +GT   ++ +  ++GG +G 
Sbjct: 302 LLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 57/347 (16%), Positives = 114/347 (32%), Gaps = 34/347 (9%)

Query: 58  TAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFA 117
           T      TA    + +   L G + +  G +  L+      +L+A   L           
Sbjct: 32  TEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIG---LLLFALGLLLLLFASSLWLL 88

Query: 118 IAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLI-PFILNYN 176
           +    + G+G G L+ A  A++  + PP  +G  + +  + F +G  +G L+   + +  
Sbjct: 89  LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148

Query: 177 RNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLK 236
              A  +     +  +  ++A     L+  PP    R           + +      +L+
Sbjct: 149 GWRAAFL----ILAILALLAAVLAALLLPRPPPESKRPKP---AEEAPAPLVPAWKLLLR 201

Query: 237 LFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIF 296
               W +L +    +A     +Y       L  +    GL          +G + +G + 
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLS 261

Query: 297 DFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVL 356
           D     RR    + ++++A LG A+ +   ++                          V 
Sbjct: 262 DRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL----------------------VA 299

Query: 357 YFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVA 403
               G    +    +  ++  LA   E     SG Y    S G A+ 
Sbjct: 300 LLLLGFGAGLVFPALNALVSDLAPKEER-GTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 12/185 (6%)

Query: 26  LVQVCLIGLVCFCCPGMFNALSG-----MGGGGQVDTTAANNANTALYTTFTIFGILGGG 80
           L  + L+ L  F     +  L       +     +    A    +       +  +LGG 
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 81  IYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT 140
           + + LG +  L+      +L A   L        A  + A  +LG G G  + A   + +
Sbjct: 234 LSDRLGRRRLLLLIG--LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 141 SYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGAL 200
              PP  +GT   +F +  ++GG +G L+  +L            G ++         AL
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-----YGGVFLILAALALLAAL 346

Query: 201 LSLVI 205
           L L++
Sbjct: 347 LLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	471
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.93
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.91
KOG0254	513	consensus Predicted transporter (major facilitator	99.91
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.9
PRK10642	490	proline/glycine betaine transporter; Provisional	99.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.89
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.89
PRK03545	390	putative arabinose transporter; Provisional	99.89
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.88
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.88
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.87
PRK11663	434	regulatory protein UhpC; Provisional	99.87
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.86
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.86
TIGR00900	365	2A0121 H+ Antiporter protein.	99.86
TIGR00898	505	2A0119 cation transport protein.	99.86
PRK10489	417	enterobactin exporter EntS; Provisional	99.85
TIGR00893	399	2A0114 d-galactonate transporter.	99.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.85
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.85
PRK12382	392	putative transporter; Provisional	99.84
PRK05122	399	major facilitator superfamily transporter; Provisi	99.84
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.84
PLN00028	476	nitrate transmembrane transporter; Provisional	99.84
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.84
TIGR00891	405	2A0112 putative sialic acid transporter.	99.83
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.83
PRK03893	496	putative sialic acid transporter; Provisional	99.83
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.83
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.83
PRK09952	438	shikimate transporter; Provisional	99.83
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.83
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.82
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.82
TIGR00895	398	2A0115 benzoate transport.	99.82
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.82
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.82
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.82
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.82
PRK10504	471	putative transporter; Provisional	99.81
PRK03633	381	putative MFS family transporter protein; Provision	99.81
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.8
PRK10091	382	MFS transport protein AraJ; Provisional	99.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.8
PRK11043	401	putative transporter; Provisional	99.8
PRK15075	434	citrate-proton symporter; Provisional	99.79
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.79
PRK09874	408	drug efflux system protein MdtG; Provisional	99.79
PRK10133	438	L-fucose transporter; Provisional	99.79
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.79
PRK03699	394	putative transporter; Provisional	99.78
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.78
PRK11010	491	ampG muropeptide transporter; Validated	99.78
KOG2533	495	consensus Permease of the major facilitator superf	99.77
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.77
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.76
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.76
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.76
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.75
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.75
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.74
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.74
PRK10054	395	putative transporter; Provisional	99.72
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.72
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.72
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.71
KOG2532	466	consensus Permease of the major facilitator superf	99.7
TIGR00901	356	2A0125 AmpG-related permease.	99.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.7
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.69
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	99.69
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.67
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.66
PRK09528	420	lacY galactoside permease; Reviewed	99.66
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.66
PRK15011	393	sugar efflux transporter B; Provisional	99.65
KOG2615	451	consensus Permease of the major facilitator superf	99.65
TIGR00805	633	oat sodium-independent organic anion transporter.	99.65
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.63
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.62
KOG3097	390	consensus Predicted membrane protein [Function unk	99.61
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.6
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.6
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.58
PRK11902	402	ampG muropeptide transporter; Reviewed	99.58
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.57
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.54
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.52
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.51
PTZ00207	591	hypothetical protein; Provisional	99.51
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.5
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.45
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.43
PRK10429	473	melibiose:sodium symporter; Provisional	99.41
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.41
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.41
PRK09669	444	putative symporter YagG; Provisional	99.4
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.32
PF13347	428	MFS_2: MFS/sugar transport protein	99.3
KOG2563	480	consensus Permease of the major facilitator superf	99.25
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.23
PRK09848	448	glucuronide transporter; Provisional	99.2
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.2
COG2211	467	MelB Na+/melibiose symporter and related transport	99.19
PRK11462	460	putative transporter; Provisional	99.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.17
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.16
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.1
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.09
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.02
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.01
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.99
PRK10642	490	proline/glycine betaine transporter; Provisional	98.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.94
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.93
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.86
PRK15011	393	sugar efflux transporter B; Provisional	98.83
PRK05122	399	major facilitator superfamily transporter; Provisi	98.78
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.78
PRK09528	420	lacY galactoside permease; Reviewed	98.75
PRK09874	408	drug efflux system protein MdtG; Provisional	98.75
PRK10489	417	enterobactin exporter EntS; Provisional	98.74
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.74
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.72
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.68
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.64
PRK12382	392	putative transporter; Provisional	98.59
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.57
PRK09705	393	cynX putative cyanate transporter; Provisional	98.57
PRK10504	471	putative transporter; Provisional	98.55
PRK03545	390	putative arabinose transporter; Provisional	98.54
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.52
TIGR00898	505	2A0119 cation transport protein.	98.49
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.48
PRK03633	381	putative MFS family transporter protein; Provision	98.45
TIGR00895	398	2A0115 benzoate transport.	98.45
PRK09952	438	shikimate transporter; Provisional	98.44
PRK03893	496	putative sialic acid transporter; Provisional	98.42
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.41
PRK11663	434	regulatory protein UhpC; Provisional	98.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.4
PRK12307	426	putative sialic acid transporter; Provisional	98.39
TIGR00900	365	2A0121 H+ Antiporter protein.	98.39
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.39
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.37
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.35
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.35
KOG3626	735	consensus Organic anion transporter [Secondary met	98.34
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.33
TIGR00893	399	2A0114 d-galactonate transporter.	98.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.31
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.3
PRK03699	394	putative transporter; Provisional	98.3
TIGR00891	405	2A0112 putative sialic acid transporter.	98.29
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.27
PRK15075	434	citrate-proton symporter; Provisional	98.26
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.26
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.2
PRK09848	448	glucuronide transporter; Provisional	98.2
PRK09669	444	putative symporter YagG; Provisional	98.2
TIGR00901	356	2A0125 AmpG-related permease.	98.18
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.18
PRK11010	491	ampG muropeptide transporter; Validated	98.17
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.17
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.17
PF13347	428	MFS_2: MFS/sugar transport protein	98.15
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.14
PLN00028	476	nitrate transmembrane transporter; Provisional	98.13
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.1
PRK10054	395	putative transporter; Provisional	98.09
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.06
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.05
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.05
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.05
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.05
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.05
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.03
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.02
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.98
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.97
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.95
PRK11043	401	putative transporter; Provisional	97.95
PRK10429	473	melibiose:sodium symporter; Provisional	97.94
COG2211	467	MelB Na+/melibiose symporter and related transport	97.93
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.92
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.92
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.9
PRK10091	382	MFS transport protein AraJ; Provisional	97.88
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.85
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.8
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.8
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.75
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.75
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.74
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.73
KOG0569	485	consensus Permease of the major facilitator superf	97.73
PRK11902	402	ampG muropeptide transporter; Reviewed	97.71
COG0477	338	ProP Permeases of the major facilitator superfamil	97.7
KOG3762	618	consensus Predicted transporter [General function	97.69
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.64
KOG2615	451	consensus Permease of the major facilitator superf	97.63
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.62
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.62
PRK11462	460	putative transporter; Provisional	97.61
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.6
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.52
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.46
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.45
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.44
PRK10133	438	L-fucose transporter; Provisional	97.43
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.38
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.3
TIGR00805	633	oat sodium-independent organic anion transporter.	97.25
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.25
PTZ00207	591	hypothetical protein; Provisional	97.24
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.22
KOG2533	495	consensus Permease of the major facilitator superf	97.17
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.04
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.81
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.77
KOG0254	513	consensus Predicted transporter (major facilitator	96.76
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.76
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.72
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.67
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.62
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.57
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.39
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.31
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.13
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.11
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.87
KOG0637	498	consensus Sucrose transporter and related proteins	95.85
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.69
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.45
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.2
KOG2532	466	consensus Permease of the major facilitator superf	95.16
KOG0637	498	consensus Sucrose transporter and related proteins	95.12
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.87
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.79
COG3202	509	ATP/ADP translocase [Energy production and convers	93.17
KOG3810	433	consensus Micronutrient transporters (folate trans	92.83
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.57
PF12832	77	MFS_1_like: MFS_1 like family	92.27
KOG2563	480	consensus Permease of the major facilitator superf	91.05
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	91.04
KOG2816	463	consensus Predicted transporter ADD1 (major facili	88.68
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	88.28
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	85.64
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.33
KOG3762	618	consensus Predicted transporter [General function	84.24
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	83.18
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	82.59
PF12832	77	MFS_1_like: MFS_1 like family	82.06
KOG3098	461	consensus Uncharacterized conserved protein [Funct	81.4
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	80.64

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=9.5e-30  Score=253.59  Aligned_cols=368  Identities=23%  Similarity=0.360  Sum_probs=259.6

Q ss_pred             cchhHHHHHHHHHHhhhhhhhHhhhhcC--------C--CCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHH
Q 012075           23 NSPLVQVCLIGLVCFCCPGMFNALSGMG--------G--GGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLI   92 (471)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~--------~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~   92 (471)
                      +....++..+++..++.+.++...+..+        .  .+..+++.+..+++++|..+.++|+++|++.|+.|.|+.|+
T Consensus         5 ~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv   84 (461)
T KOG3098|consen    5 RFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALV   84 (461)
T ss_pred             cchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHH
Confidence            4455677888887776665554322111        1  13456677888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHH
Q 012075           93 SACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFI  172 (471)
Q Consensus        93 i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~  172 (471)
                      +++.+|..|.+++++    .|.+.++++..+.|+|.+..|+.++.|++|++++|++.+++++.|+....+.++|+++.+.
T Consensus        85 ~ga~~y~~f~~gfl~----~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen   85 IGATCYAAFPLGFLF----PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             HHhHHHHHHHHHHHh----cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            999999999999887    6899999999999999999999999999999999999999999999999999999988755


Q ss_pred             hhccCCCccccccch--------hHHHHHHHHHHHHHHHhc-------cCCCccccCCCCccccccCCCHHHHHHHHHHH
Q 012075          173 LNYNRNEAVSVNDGT--------YIGFMCFMSAGALLSLVI-------LPPGRVIRDDGTHCTNIKYSNVSTEITQVLKL  237 (471)
Q Consensus       173 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~l-------~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  237 (471)
                      +....+.........        +..+.+......+.....       ..|.+.   ...+.+.. +++..++++...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~---~~~~~~~~-~~~~~~~l~~~~~l  236 (461)
T KOG3098|consen  161 YFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD---VVNCKSSS-ETSFSELLKLTFKL  236 (461)
T ss_pred             eeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc---hhhhhhhc-cccHHHHHHHHHHH
Confidence            443322111100000        122222222222221111       112110   00011111 14678888999999


Q ss_pred             hcchhHHHHHHHHHHhHhHhhhcc---cccccc--cc--c-cchhhhHHHHHHHHHHHHhhhhhhhcccC-CCCccceee
Q 012075          238 FSNWKMLLIFPASWASNFFYSYQF---NNVNGL--QF--N-LRTRGLNNVFYWGAQMLGSVGIGYIFDFS-FPTRRKRGF  308 (471)
Q Consensus       238 ~~~~~~ll~~~~~~~~~~~~s~~~---~~~~~~--~~--~-~~~~~l~~~~~~i~~i~g~~~~g~l~D~~-~~gRr~~~~  308 (471)
                      +++|+++++.|.++++|+..++..   ++....  ..  + ....++..++.++++++++...+.+.||. +.||++...
T Consensus       237 ~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~  316 (461)
T KOG3098|consen  237 LKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL  316 (461)
T ss_pred             hcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence            999999999999999987555443   333211  11  1 11345667889999999999999999885 689999888


Q ss_pred             ehhhhHHHHHHHHHHhHhhhhcccCCCCC--C-C--ccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCch
Q 012075          309 VGIVVVALLGSAIWAGGLANQLNYSHDKP--P-A--KLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSE  383 (471)
Q Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  383 (471)
                      ++..++.....+..       ..++.+.|  | +  ..++.   +.+....++.+++|+.|++++++.+++++..+++  
T Consensus       317 ~~~~~~~~~~~li~-------l~~p~dap~~~t~~~~~~~~---~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~--  384 (461)
T KOG3098|consen  317 IGIIIHLIGFLLIH-------LSFPNDAPLRPTDSPPLLFT---PSYYLALIIGFLLGFGDACFNTQRYVIIALLYPD--  384 (461)
T ss_pred             HHHHHHHHHHHHHh-------ccccccCCCCCCcccccccc---cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--
Confidence            77766632222221       22232221  0 0  11222   4566789999999999999999999999999944  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccC
Q 012075          384 TLSRYSGFYKGVQSAGAAVAWQVDTHK  410 (471)
Q Consensus       384 ~~~~~~~~~~~~~s~g~~i~~~~~~~~  410 (471)
                      ++.++++++|+.|++++++.++..+..
T Consensus       385 ~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  385 DRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            347899999999999999988877643

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.6e-25  Score=222.93  Aligned_cols=358  Identities=15%  Similarity=0.146  Sum_probs=211.9

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      +..++..+.+..+|+++.++++|++|||.+++++.+...+...........++.++++++|++.|+..|......+.|+.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~  142 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT  142 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            44566778888899999999999999999999999876654433443334678899999999999999999999999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC--CCccc--cCCC
Q 012075          141 SYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP--PGRVI--RDDG  216 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~~~--r~~~  216 (471)
                      |++|++.||....+.+....+|.++|..++.--..  ++..  .|.....+..+.++..++.+++.|  |+++-  |.|+
T Consensus       143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il--Gt~~--~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~  218 (485)
T KOG0569|consen  143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL--GTED--LWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDE  218 (485)
T ss_pred             hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc--CCCc--chHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCH
Confidence            99999999999999999999999999777632111  1111  122222222233333333444455  55531  2221


Q ss_pred             Ccc--c------ccc-CCCH---HHHH----------HHHHHHhcch----hHHHHHHHHHHhHhH---hhhcccc-c-c
Q 012075          217 THC--T------NIK-YSNV---STEI----------TQVLKLFSNW----KMLLIFPASWASNFF---YSYQFNN-V-N  265 (471)
Q Consensus       217 ~~~--~------~~~-~~~~---~~~~----------~~~~~~~~~~----~~ll~~~~~~~~~~~---~s~~~~~-~-~  265 (471)
                      ++.  .      .++ ++..   .++.          .+.++.+++|    .+.+.+...+.+++.   --..|++ + .
T Consensus       219 ~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~  298 (485)
T KOG0569|consen  219 EEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFK  298 (485)
T ss_pred             HHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHH
Confidence            110  0      000 0000   0000          0122223322    222222222223220   0011111 1 1


Q ss_pred             ccccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCC
Q 012075          266 GLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKN  345 (471)
Q Consensus       266 ~~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (471)
                      ..+++.......+...++.+++.++++.++.||  .|||++++.+..++.+..+++... ..+.....        +|  
T Consensus       299 ~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~--~gRRpLll~~~~~~~~~~~~~~~~-~~l~~~~~--------~~--  365 (485)
T KOG0569|consen  299 TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR--LGRRPLLLISLSLMAVALLLMSIA-LFLSNSFG--------SW--  365 (485)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh--------hH--
Confidence            234555556678888999999999999999999  899999999887775444333321 11111000        12  


Q ss_pred             CCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHHHHHHHhhhccc---CchhhHH-HH-H
Q 012075          346 SGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALAD-DSETLSRYSGFYKGVQSAGAAVAWQVDTH---KVSLLSQ-LV-V  419 (471)
Q Consensus       346 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~s~g~~i~~~~~~~---~~p~~~~-~~-~  419 (471)
                        ..|..+..++.+...+..+-.|+.|-+.+|+++ ++|  ..+       ++.+.+++|..+-.   ..|++.. ++ -
T Consensus       366 --~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R--~aa-------~s~~~~~~w~~~fiv~~~fp~l~~~~g~~  434 (485)
T KOG0569|consen  366 --LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR--SAA-------QSVATAVNWLSNFIVGFAFPPLQNVIGPY  434 (485)
T ss_pred             --HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch--HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence              123333444444444555556777777899993 333  444       35666667766532   2444333 33 2


Q ss_pred             HHHHHHhhhhhhhheeeeeeccCCCcc
Q 012075          420 NWSLTTISYPLLVILVLLAVKDEKSPE  446 (471)
Q Consensus       420 ~~~~~~~~~~~~i~~~~~~~pet~~~~  446 (471)
                      .+.+|.+.+.....+.|+++||||.++
T Consensus       435 ~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  435 VFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             hhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            334555555566677899999997553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.91  E-value=7.7e-23  Score=218.49  Aligned_cols=115  Identities=14%  Similarity=0.233  Sum_probs=98.3

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...++.+++..++++++|+++||+|||++++++.+++.++....   +.+++.+.++++|++.|++.|...+..
T Consensus       200 s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~---afa~s~~~llv~R~l~G~g~g~~~p~~  276 (742)
T TIGR01299       200 PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFS---SFVQGYGFFLFCRLLSGFGIGGAIPIV  276 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566777888889999999999999999999999988776643322   235789999999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ..+++|++|+++||+.++++++...+|.++++.++..+
T Consensus       277 ~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       277 FSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999876544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=211.90  Aligned_cols=358  Identities=15%  Similarity=0.145  Sum_probs=209.6

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      +...+..+++.+++++++|+++|++|||++++++.+.|.+.....   +.++|.++++++|++.|+|.|......+.|++
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~---~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIII---ALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            455667778888999999999999999999999999887743333   34789999999999999999999999999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC--CCccccCC---
Q 012075          141 SYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP--PGRVIRDD---  215 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~~~r~~---  215 (471)
                      |++|++.||...+.++....+|..+|.++++.....   .  +.|+.......+.++...+.+++.|  |+++-|+.   
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~---~--~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~  243 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV---Y--AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLE  243 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC---C--ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChH
Confidence            999999999999999999999999997777544211   0  2344333333333333333344444  55543311   


Q ss_pred             CCccc----cc-cCCCHHHHH---H-----H--------HHHHh----cchhHHHHHHHHHHhHhH----hhhccccccc
Q 012075          216 GTHCT----NI-KYSNVSTEI---T-----Q--------VLKLF----SNWKMLLIFPASWASNFF----YSYQFNNVNG  266 (471)
Q Consensus       216 ~~~~~----~~-~~~~~~~~~---~-----~--------~~~~~----~~~~~ll~~~~~~~~~~~----~s~~~~~~~~  266 (471)
                      +++..    .. ++.+..+++   +     +        .++.+    .+++......+..++++.    ..++.+++..
T Consensus       244 ~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  244 EAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             HHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence            11100    00 011111111   0     0        01111    112233333333344431    0011011111


Q ss_pred             -cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCC
Q 012075          267 -LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKN  345 (471)
Q Consensus       267 -~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (471)
                       .+++... ....+..++.+++++.+..++.||  +|||++++.|...|.++.. +.+..........    .   ....
T Consensus       324 ~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~--~gRr~lll~s~~~m~~~~~-~~~~~~~~~~~~~----~---~~~~  392 (513)
T KOG0254|consen  324 SAGLKSDT-FLASIILGVVNFLGTLVATYLVDR--FGRRKLLLFGAAGMSICLV-ILAVVGVFALYYP----N---SSKG  392 (513)
T ss_pred             hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHhHHHHHHHHH-HHHHHHHHhccCC----C---cccc
Confidence             1222111 556778899999999998999999  7999999999888844333 3222221110000    0   0011


Q ss_pred             CCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHHHHHHHhhhccc---CchhhHHH---H
Q 012075          346 SGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALAD-DSETLSRYSGFYKGVQSAGAAVAWQVDTH---KVSLLSQL---V  418 (471)
Q Consensus       346 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~s~g~~i~~~~~~~---~~p~~~~~---~  418 (471)
                        ..+.....+.++...+..++.+..|.+.+|+++ +.|  +++.       +++.+++|..+..   ..+.+...   +
T Consensus       393 --~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r--~~~~-------s~~~~~n~~~~~~v~~~~~~~~~~~~~~  461 (513)
T KOG0254|consen  393 --AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLR--SKGA-------SLAVAVNWLWNFLISFFFPFITEALGIG  461 (513)
T ss_pred             --hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHH--hhhH-------HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence              233344555666667777777777777899993 333  3333       4455555554421   12222211   2


Q ss_pred             HHHHHHHh-hhhhhhheeeeeeccCCCccCc
Q 012075          419 VNWSLTTI-SYPLLVILVLLAVKDEKSPEES  448 (471)
Q Consensus       419 ~~~~~~~~-~~~~~i~~~~~~~pet~~~~~~  448 (471)
                      ..+.++.. +.+..+.++++++|||++...+
T Consensus       462 ~~f~~f~~~~~~~~~~fv~~~~pETkg~sle  492 (513)
T KOG0254|consen  462 GTFGYFGGICLLSLIIFVFFFVPETKGLTLE  492 (513)
T ss_pred             chHHHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence            34444444 3334443789999999766333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.90  E-value=8.7e-22  Score=205.53  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=93.9

Q ss_pred             hhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccc------hHHHHHHHHHHhhhhhHHH
Q 012075           59 AANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKH------QAFAIAAGAILGIGAGLLW  132 (471)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~------~~~li~~r~l~G~g~g~~~  132 (471)
                      ..+...+....+..++++++|+++||+|||+.+.++.+++.+.......   +++      .+.++++|++.|++.|...
T Consensus        57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGL---SPGSSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH---ccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence            3345566677778899999999999999999999998887764332222   333      6789999999999999999


Q ss_pred             hhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          133 AAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       133 ~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      +..+.|++|++|+++||+.+++++....+|.++|+.++..+
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.90  E-value=6.5e-22  Score=205.80  Aligned_cols=303  Identities=12%  Similarity=0.036  Sum_probs=168.4

Q ss_pred             HHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHH--------HHHHHHHHhhhhhHHHhhh
Q 012075           64 NTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAF--------AIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        64 ~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~--------li~~r~l~G~g~g~~~~~~  135 (471)
                      .+..+.+..+++++.|+++||+|||+++.++.+++.+.....   +.++|++.        ++++|+++|+|.|..++..
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~---a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~  139 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCI---GLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGA  139 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHH
Confidence            366778889999999999999999999999999887744333   34677764        8999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCC----CccccccchhHHHHHHHHHHHHHHHhccC--CC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRN----EAVSVNDGTYIGFMCFMSAGALLSLVILP--PG  209 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~  209 (471)
                      ..+++|++|+++||+..++......+|..+|+.+...+.....    ...+||+.+++ ...+.++..++ ....|  |+
T Consensus       140 ~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i-~~~~~l~~~~~-~~~~~esp~  217 (490)
T PRK10642        140 SIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFI-ALPLGIIGLYL-RHALEETPA  217 (490)
T ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHH-HHHHHHHHHHH-HHcCCCChh
Confidence            9999999999999999999998888888888866532211000    01345544332 22222222222 12223  22


Q ss_pred             ccccCCCCcc--ccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hhh--hcccccccc--ccccchhhhHHHHHH
Q 012075          210 RVIRDDGTHC--TNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF-FYS--YQFNNVNGL--QFNLRTRGLNNVFYW  282 (471)
Q Consensus       210 ~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~s--~~~~~~~~~--~~~~~~~~l~~~~~~  282 (471)
                      +.+++++.+.  .+..++..+..+++.++. ..++++......+.... ++.  ..++++...  +++.....+......
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~  296 (490)
T PRK10642        218 FQQHVDKLEQGDREGLQDGPKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIM  296 (490)
T ss_pred             HHHHHHhhhhhccccccccccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            2111110000  000000000112223221 11222222222221111 111  112444322  233333445556677


Q ss_pred             HHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHh
Q 012075          283 GAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGL  362 (471)
Q Consensus       283 i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  362 (471)
                      ++.+++.++.|++.||  +|||+....+.+...+.....+.     ..  .           .  .......+..++.++
T Consensus       297 ~~~~~~~~~~g~l~dr--~grr~~~~~~~~~~~~~~~~~~~-----~~--~-----------~--~~~~~~~~~~~~~g~  354 (490)
T PRK10642        297 IGMLFVQPVMGLLSDR--FGRRPFVILGSVALFVLAIPAFI-----LI--N-----------S--NVIGLIFAGLLMLAV  354 (490)
T ss_pred             HHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHH-----HH--h-----------C--CCHHHHHHHHHHHHH
Confidence            8888999999999999  89998665554322111111110     00  0           0  112223334444555


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 012075          363 LDAMFQSMVYWVIGALADDSETLSRYSGFYKGV  395 (471)
Q Consensus       363 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  395 (471)
                      ..+...+....+++|++++ +.+++++++...+
T Consensus       355 ~~~~~~g~~~~~~~~~~p~-~~Rg~~~g~~~~~  386 (490)
T PRK10642        355 ILNCFTGVMASTLPAMFPT-HIRYSALAAAFNI  386 (490)
T ss_pred             HHHHHHHHHHHHHHHHCCC-ccchHHHHHHHHH
Confidence            5555556666778888843 3447777764433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.89  E-value=3.2e-21  Score=195.68  Aligned_cols=314  Identities=17%  Similarity=0.141  Sum_probs=190.4

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..++++++|+++||+|||+.+.++.++..+.....   ..+++.+.+++.|++.|++.+...+..
T Consensus        48 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~~~~~~~~  124 (406)
T PRK11551         48 DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLAT---AQAWDFPSLLVARLLTGVGLGGALPNL  124 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHhhHHHHHHHH
Confidence            45555666777778888899999999999999999999987765533222   336889999999999999999998888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..++.|..|+++||+.+++++....+|..+++.++.... .   ..+|++. +++..++.++..++..++.|+++..+++
T Consensus       125 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~  199 (406)
T PRK11551        125 IALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA-G---DAAWRHI-FYVGGVGPLLLVPLLMRWLPESRAFAQA  199 (406)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c---ccCHHHH-HHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence            999999999999999999999999999999998874332 1   1234433 3232222232222233333322111111


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHh--Hh--Hhhhccccccc-cccccchhhhHHHHHHHHHHHHhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWAS--NF--FYSYQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~--~~s~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                      +.+  .+++++..   +..++..+.++........+..  ..  ...+. +.+.. .+++....++.....+++.+++.+
T Consensus       200 ~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~  273 (406)
T PRK11551        200 AGA--GKQRAPVL---RALFGEGRATATLLLWISYFFTLIVLYFLLNWL-PSLLVGQGLSRSQAGLVQIAFNIGGALGSL  273 (406)
T ss_pred             cCc--chhhhhhH---HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCChhhhhHHHHHHHHHHHHHHH
Confidence            000  00111111   1111111112222111111111  11  11111 23322 234444566777778899999999


Q ss_pred             hhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHH
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSM  370 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  370 (471)
                      +.|++.||  +|||+....+...+. +....    ..    +.              ++.....+..++.+++..+.++.
T Consensus       274 ~~g~l~dr--~g~~~~~~~~~~~~~-~~~~~----~~----~~--------------~~~~~~~~~~~~~g~~~~~~~~~  328 (406)
T PRK11551        274 LIGALMDR--LRPRRVVLLIYAGIL-ASLAA----LA----AA--------------PSFAGMLLAGFAAGLFVVGGQSV  328 (406)
T ss_pred             HHHHHHHH--HhHHHHHHHHHHHHH-HHHHH----HH----hc--------------CcHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999  788876544332221 11111    10    00              11122344556677777777777


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          371 VYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       371 ~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      .+.+..|.++ +++++++.|+.+.+..++.+++..+...
T Consensus       329 ~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~  366 (406)
T PRK11551        329 LYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQ  366 (406)
T ss_pred             HHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhh
Confidence            8888888884 3456899999999888888887766543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.89  E-value=8.2e-22  Score=203.12  Aligned_cols=370  Identities=10%  Similarity=0.049  Sum_probs=197.6

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      ....+...+..+.+..++++++|+++||+|||+.++++.+++.+............+.+.++++|++.|+|.+..++...
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            34456667778888899999999999999999999999988766433332212234556899999999999999999999


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCC--ccccC
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPG--RVIRD  214 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~--~~~r~  214 (471)
                      .+++|+.|+++|++.+++++....+|..+|+.++....... +..+|++..++ .....++.. +..++.|++  +..++
T Consensus       150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~w~~~f~~-~~~~~~~~~-~~~~~l~~~~~~~~~~  226 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN-NTLGWRIPLGL-QLIPAGLLF-LGLFFLPESPRWLVGK  226 (481)
T ss_pred             HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC-CCccHHHHHHH-HHHHHHHHH-HHHhcCCCChHHHHHc
Confidence            99999999999999999999999999999999871111111 11234443332 222222222 223333322  11111


Q ss_pred             CCCcc---c-----cccCCC--HHH------------------HHHHHHHHhc--chhHHHHHHHHHHhHhH----hhhc
Q 012075          215 DGTHC---T-----NIKYSN--VST------------------EITQVLKLFS--NWKMLLIFPASWASNFF----YSYQ  260 (471)
Q Consensus       215 ~~~~~---~-----~~~~~~--~~~------------------~~~~~~~~~~--~~~~ll~~~~~~~~~~~----~s~~  260 (471)
                      ++.+.   .     ..+++.  ..+                  ++++.++..+  .++.+............    ..+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (481)
T TIGR00879       227 GRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYY  306 (481)
T ss_pred             CChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHH
Confidence            10000   0     000000  000                  0011111111  12222111111111110    0111


Q ss_pred             ccccc-ccccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCC
Q 012075          261 FNNVN-GLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPA  339 (471)
Q Consensus       261 ~~~~~-~~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (471)
                      .+.+. ..+++....++......++.+++.++.+++.||  +|||+....+..++.+ ......  .. .....+   + 
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~~~~~~~~~~~~~~~~-~~~~~~--~~-~~~~~~---~-  376 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR--FGRRPLLLIGAAGMAI-CLFVLG--IL-GASFVT---G-  376 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHH-HHHHHH--HH-hhcccC---C-
Confidence            11111 123344345566677788899999999999999  7899877666444422 211111  00 000000   0 


Q ss_pred             ccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHH
Q 012075          340 KLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVV  419 (471)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~~~~~  419 (471)
                       .+ ..  ..........++.+++..++.+..+.++.|.++ +++++++.++.+....++.++.-.+.+....... ...
T Consensus       377 -~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~  450 (481)
T TIGR00879       377 -SS-KS--SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGG  450 (481)
T ss_pred             -cc-cc--hhHHHHHHHHHHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Confidence             00 00  122222333334444444555556666788884 3455889999988888877766654432111100 011


Q ss_pred             HHHHHHhhhhhhhheeeeeeccCCCc
Q 012075          420 NWSLTTISYPLLVILVLLAVKDEKSP  445 (471)
Q Consensus       420 ~~~~~~~~~~~~i~~~~~~~pet~~~  445 (471)
                      .+.+.++..+......+++.|||++.
T Consensus       451 ~f~~~~~~~~~~~i~~~~~~~~~~~~  476 (481)
T TIGR00879       451 VFIFFGGLNVLGLIFVYFFLPETKGR  476 (481)
T ss_pred             eehhHHHHHHHHHHHHheecccCCCC
Confidence            22222222223333345667888754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03545 putative arabinose transporter; Provisional

Probab=99.89  E-value=2.2e-20  Score=188.71  Aligned_cols=334  Identities=12%  Similarity=0.094  Sum_probs=200.0

Q ss_pred             hhHHHHHHHHHHhhhhhhhH----hhhhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHH
Q 012075           25 PLVQVCLIGLVCFCCPGMFN----ALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVL  100 (471)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~  100 (471)
                      +|..+..+.++.+.......    ....+..+.+.++...+...+......+++++++|+++||+|||+.+.++.+++.+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   86 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA   86 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            45555555555544321111    12233333334555666667777778888999999999999999999999887766


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCc
Q 012075          101 YAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA  180 (471)
Q Consensus       101 ~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~  180 (471)
                      .....   ..++|.+.++++|++.|++.+..++....++.|+.|+++||+++|++.....+|..+|+.++..+...    
T Consensus        87 ~~~~~---~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~----  159 (390)
T PRK03545         87 SHVLS---ALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY----  159 (390)
T ss_pred             HHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH----
Confidence            33322   33689999999999999999998888889999999999999999999999999999999987433221    


Q ss_pred             cccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHH-h--Hh-H
Q 012075          181 VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWA-S--NF-F  256 (471)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~--~~-~  256 (471)
                      .+|++. ++...++.++..+......|+++ +++         +++    .++..+.+++|+++......+. .  .+ .
T Consensus       160 ~gw~~~-f~~~~~~~~l~~~~~~~~~~~~~-~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (390)
T PRK03545        160 LGWRTT-FLAIGGGALITLLLLIKLLPLLP-SEH---------SGS----LKSLPLLFRRPALVSLYLLTVVVVTAHFTA  224 (390)
T ss_pred             hcHHHH-HHHHHHHHHHHHHHHHHhCCCCC-CCC---------cch----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            234443 33333333333333333333211 110         111    1222334566655432221111 1  11 1


Q ss_pred             hhhccccccc--cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCC
Q 012075          257 YSYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSH  334 (471)
Q Consensus       257 ~s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  334 (471)
                      +++. +.+..  .+++....+......+++.+++.++.+++.||  .+||... .+....   ...... ... .   . 
T Consensus       225 ~~~~-~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr--~~~~~~~-~~~~~~---~~~~~~-l~~-~---~-  291 (390)
T PRK03545        225 YSYI-EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR--HPSGFLL-IAIALL---LVCLLL-LLP-A---A-  291 (390)
T ss_pred             HHHH-HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhHHH-HHHHHH---HHHHHH-HHH-H---h-
Confidence            1221 22222  23344455666667788999999999999999  6777532 222211   111111 000 0   0 


Q ss_pred             CCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          335 DKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                                   .+.....++.+++|++.....+.....+.+..++  ++++++|.+.....+|.+++-.+..
T Consensus       292 -------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~G~~~~G  350 (390)
T PRK03545        292 -------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD--ATDVAMALFSGIFNIGIGAGALLGN  350 (390)
T ss_pred             -------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         1122234456667777655555445556666643  4578899999888888888877654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.88  E-value=4.2e-21  Score=199.13  Aligned_cols=366  Identities=13%  Similarity=0.050  Sum_probs=197.2

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh------c---ccchHHHHHHHHHHhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN------H---HKHQAFAIAAGAILGIG  127 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~------~---~~~~~~li~~r~l~G~g  127 (471)
                      +...+...+....+..++++++|+++||+|||++++++.+++.+.........      .   .++.+.++++|+++|++
T Consensus        54 ~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~  133 (479)
T PRK10077         54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG  133 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh
Confidence            34556677778888899999999999999999999999988766433222100      0   12245788999999999


Q ss_pred             hhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCC----CccccccchhHHHHHHHHHHHHHHH
Q 012075          128 AGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRN----EAVSVNDGTYIGFMCFMSAGALLSL  203 (471)
Q Consensus       128 ~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~  203 (471)
                      .|...+...++++|++|+++||+++++++....+|..++++++..+.....    +..+||+.. +...+..++..+..+
T Consensus       134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f-~~~~~~~~~~~~~~~  212 (479)
T PRK10077        134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF-ASEAIPALLFLMLLY  212 (479)
T ss_pred             HhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHH-HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887654421100    112344433 222233333333333


Q ss_pred             hccC-CCccccC---CCCccc---cccCCCHHH---HHHHHHHHh--cchhHHHH-----H---HHHHHhHhH-h---hh
Q 012075          204 VILP-PGRVIRD---DGTHCT---NIKYSNVST---EITQVLKLF--SNWKMLLI-----F---PASWASNFF-Y---SY  259 (471)
Q Consensus       204 ~l~~-p~~~~r~---~~~~~~---~~~~~~~~~---~~~~~~~~~--~~~~~ll~-----~---~~~~~~~~~-~---s~  259 (471)
                      ++++ |++..++   |+++..   ....+..++   +.++..+..  +.++.+..     .   ....+.+.. +   .+
T Consensus       213 ~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (479)
T PRK10077        213 FVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLY  292 (479)
T ss_pred             cCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHH
Confidence            3322 2222111   110000   000111111   111111100  01111100     0   000011110 0   01


Q ss_pred             ccccccc-cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCC
Q 012075          260 QFNNVNG-LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPP  338 (471)
Q Consensus       260 ~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (471)
                      ..+.+.. .+++.....+.....++..+++.++.+++.||  +|||+..+.+..++.+.. ....  .. .  ..     
T Consensus       293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr--~g~r~~~i~~~~~~~v~~-~~l~--~~-~--~~-----  359 (479)
T PRK10077        293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGM-FSLG--TA-F--YT-----  359 (479)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH--hcChHHHHHhHHHHHHHH-HHHH--HH-H--hc-----
Confidence            1112111 12222233455566788899999999999999  899998877766553222 1111  00 0  00     


Q ss_pred             CccCCCCCCCCchhHHHHHHHHHhhHH-HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCc--hhhH
Q 012075          339 AKLDFKNSGSDFAGPFVLYFCYGLLDA-MFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKV--SLLS  415 (471)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~--p~~~  415 (471)
                         +  .  .... .....++++++.+ .+.+..+.++.|.++ ++++++++|+...++.++..++-.+.+...  ++..
T Consensus       360 ---~--~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~  430 (479)
T PRK10077        360 ---Q--A--PGIV-ALLSMLFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV  430 (479)
T ss_pred             ---C--c--ccHH-HHHHHHHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence               1  1  1111 2222233333332 345667788899984 456689999999888888877644333111  1110


Q ss_pred             -HHH--HHHHHHHhhhhhhhheeeeeeccCCCc
Q 012075          416 -QLV--VNWSLTTISYPLLVILVLLAVKDEKSP  445 (471)
Q Consensus       416 -~~~--~~~~~~~~~~~~~i~~~~~~~pet~~~  445 (471)
                       ..+  ..+.++++..+......++++|||+++
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        431 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             hhccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence             111  112222222223334456678999765

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.88  E-value=2e-20  Score=189.26  Aligned_cols=352  Identities=11%  Similarity=0.010  Sum_probs=201.5

Q ss_pred             hhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhh
Q 012075           47 SGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGI  126 (471)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~  126 (471)
                      ..+.++...+....+...+..+.++++++++.|+++||+|||+++..+.+++.+.....   +.++|++.++++|+++|+
T Consensus        33 p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~---~~a~~~~~ll~~r~l~Gi  109 (393)
T PRK09705         33 PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMR---ELYPQSALLLSSALLGGV  109 (393)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHH---HHCcchHHHHHHHHHHHh
Confidence            33444433456666777888888899999999999999999999999999887644332   347899999999999999


Q ss_pred             hhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhcc
Q 012075          127 GAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVIL  206 (471)
Q Consensus       127 g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~  206 (471)
                      |.+..++....++.+..| ++|+++++++......|..+|+.+...+..+.   .+|++..++ +.+...+..+..++..
T Consensus       110 g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~---~~w~~~~~~-~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        110 GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS---ETWYQTLAW-WALPAVVALFAWWWQS  184 (393)
T ss_pred             HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            999999888889988875 88999999999999899999888763332111   134433222 2222222221111211


Q ss_pred             CCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHh---hhccccccc-cccccchhhhHHHHHH
Q 012075          207 PPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFY---SYQFNNVNG-LQFNLRTRGLNNVFYW  282 (471)
Q Consensus       207 ~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---s~~~~~~~~-~~~~~~~~~l~~~~~~  282 (471)
                      ++++  +++++     ++.+.       .+.+++|+.+.+..........+   ....+.+.. .+++..+.+......+
T Consensus       185 ~~~~--~~~~~-----~~~~~-------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~  250 (393)
T PRK09705        185 AREV--ASSHK-----TTTTP-------VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMT  250 (393)
T ss_pred             cCCC--ccccC-----CCcCC-------cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHH
Confidence            1111  11000     00010       11234455443332222222111   111133332 2344445666677789


Q ss_pred             HHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHh
Q 012075          283 GAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGL  362 (471)
Q Consensus       283 i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  362 (471)
                      ++.+++.++.+++.||  .+||+....+.... .++...    +..   .+        .     ...   ....++.|+
T Consensus       251 i~~i~g~~~~g~l~~r--~~~~~~~~~~~~l~-~~~~~~----~~~---~~--------~-----~~~---~~~~~l~g~  304 (393)
T PRK09705        251 LGQAAGALLMPAMARH--QDRRKLLMLALVLQ-LVGFCG----FIW---LP--------L-----QLP---VLWAMVCGL  304 (393)
T ss_pred             HHHHHHHHHHHHHHhh--ccchHHHHHHHHHH-HHHHHH----HHH---cc--------c-----hHH---HHHHHHHHH
Confidence            9999999999999998  78887665553322 111111    110   01        0     001   112233455


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHHHhhhhhhhheeeeeeccC
Q 012075          363 LDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKDE  442 (471)
Q Consensus       363 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~pet  442 (471)
                      +.+...+.......+...+++++++.+++.+.+..++..++..+..............+.+..+..+......+...|||
T Consensus       305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55555555544445555444566888888888877776666554432211111122333333333333334445677888


Q ss_pred             CCcc
Q 012075          443 KSPE  446 (471)
Q Consensus       443 ~~~~  446 (471)
                      +.+|
T Consensus       385 ~~~~  388 (393)
T PRK09705        385 FPQL  388 (393)
T ss_pred             ccch
Confidence            5543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.88  E-value=3.1e-20  Score=191.32  Aligned_cols=368  Identities=14%  Similarity=0.080  Sum_probs=193.3

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYY-NHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~-~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      .++...+...+....+.++++++.|+++||+|||+.++++.+++.+........ ..+++.+.+++.|++.|++.+..++
T Consensus        60 ~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~  139 (452)
T PRK11273         60 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  139 (452)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccch
Confidence            345556667778888889999999999999999999999998776543332221 1124678899999999999998877


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhh-hhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC--CCc
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGG-VIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP--PGR  210 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~-~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~  210 (471)
                      .....+.|+.|+++||+.+++++...++|. +.++++..+....    .+|++.++ +..++..+..++..++.|  |+.
T Consensus       140 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~gw~~~f~-i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        140 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF----NDWHAALY-MPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----ccHHHHHH-HHHHHHHHHHHHHHHHccCCHhh
Confidence            777788899999999999999999988886 4566654333221    24554333 333333333333333323  221


Q ss_pred             c--ccCCC-----Ccc---ccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhcccccccc--ccccchhh
Q 012075          211 V--IRDDG-----THC---TNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGL--QFNLRTRG  275 (471)
Q Consensus       211 ~--~r~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~--~~~~~~~~  275 (471)
                      .  .++++     ++.   .++++.+.++.+.  ...+++|+++...........   .....++.+...  +++....+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~  292 (452)
T PRK11273        215 CGLPPIEEYKNDYPDDYNEKHEQELTAKQIFM--QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS  292 (452)
T ss_pred             cCCCChhhhhhccccccccccCCCccHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            1  00000     000   0001111222111  123456666544333222221   111222444432  34444555


Q ss_pred             hHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHH
Q 012075          276 LNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFV  355 (471)
Q Consensus       276 l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (471)
                      .......++.+++.++.|+++||.+-+||...  ....+....... . .+...   .        .     .......+
T Consensus       293 ~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~--~~~~~~l~~~~~-~-~~~~~---~--------~-----~~~~~~~~  352 (452)
T PRK11273        293 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT--GVFFMTLVTIAT-I-VYWLN---P--------A-----GNPTVDMA  352 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCcchH--HHHHHHHHHHHH-H-HHHHh---c--------c-----cChHHHHH
Confidence            66667788899999999999999322444321  111111111111 0 01000   0        0     11111122


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH-HhhhcccCchhhHHHHHHHHHH-Hhhhhhhhh
Q 012075          356 LYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAV-AWQVDTHKVSLLSQLVVNWSLT-TISYPLLVI  433 (471)
Q Consensus       356 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i-~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~i~  433 (471)
                      +.+..|+..........++..|.++ +++++++.|+.+....++.++ +..+......... ....+.+. +.++++.+.
T Consensus       353 ~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        353 CMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcC-hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHH
Confidence            2233333222222233445567773 445689999988877666443 3333222111111 11122222 223344444


Q ss_pred             eeeeeeccCCCccCcccc
Q 012075          434 LVLLAVKDEKSPEESTNS  451 (471)
Q Consensus       434 ~~~~~~pet~~~~~~~~~  451 (471)
                      .+++.-+|+|++||.+..
T Consensus       431 ~~~~~~~~~~~~~~~~~~  448 (452)
T PRK11273        431 LIVVMIGEKRHHEELLQK  448 (452)
T ss_pred             HHHHhccccchHHHHHhh
Confidence            455667888888887543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=2e-20  Score=191.11  Aligned_cols=316  Identities=13%  Similarity=0.016  Sum_probs=180.1

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..+++++.|+++||+|||+++.++.+...+.....   ..+++.+.++++|++.|++.+...+..
T Consensus        51 s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~g~~~~~~  127 (426)
T PRK12307         51 TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS---GLASGVIMLTLSRFIVGMGMAGEYACA  127 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34455666777778888999999999999999999999998877643332   336789999999999999999999889


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhcc--CCCccc-
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVIL--PPGRVI-  212 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~p~~~~-  212 (471)
                      ..++.|+.|+|+|+++++++.....+|.++++.+...+..    ..+|++..++  .++..   ++.++++  .|+..+ 
T Consensus       128 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~----~~~w~~~f~i--~~~~~---~~~~~~~~~~p~~~~~  198 (426)
T PRK12307        128 STYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE----AYGWRAAFFV--GLLPV---LLVIYIRARAPESKEW  198 (426)
T ss_pred             HHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc----cCCHHHHHHH--HHHHH---HHHHHHHHHCCCChHH
Confidence            9999999999999999999999999999998877533321    1235444332  11111   1112211  122211 


Q ss_pred             --cCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHH----HhHh--Hhhhccccccc-cccccchhhhHHHHHHH
Q 012075          213 --RDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASW----ASNF--FYSYQFNNVNG-LQFNLRTRGLNNVFYWG  283 (471)
Q Consensus       213 --r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~--~~s~~~~~~~~-~~~~~~~~~l~~~~~~i  283 (471)
                        ++.+++. +.++...++...+..+.+++|+.........    ..+.  .....++.+.. .+++....+......++
T Consensus       199 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  277 (426)
T PRK12307        199 EEAKLSGKG-KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAF  277 (426)
T ss_pred             HHhhhhccc-cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence              1100000 0001111100011222334444322211111    1111  01111133322 23333344555667788


Q ss_pred             HHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhh
Q 012075          284 AQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLL  363 (471)
Q Consensus       284 ~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  363 (471)
                      +.+++.++.+++.||  +|||+....+.+... +....    .. .  .+        +     ........+.+..++.
T Consensus       278 ~~~~g~~~~g~l~dr--~~~~~~~~~~~~~~~-~~~~~----~~-~--~~--------~-----~~~~~~~~~~~~~~~~  334 (426)
T PRK12307        278 GTVLGNIVWGLCADR--IGLKKTFSIGLLMSF-LFIFP----LF-R--IP--------Q-----DNYLLLGACLFGLMAT  334 (426)
T ss_pred             HHHHHHHHHHHHHHH--hccHHHHHHHHHHHH-HHHHH----HH-H--Hc--------c-----ccHHHHHHHHHHHHHh
Confidence            999999999999999  789886655543321 11111    00 0  00        0     1111111111112222


Q ss_pred             HHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          364 DAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       364 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ..+..+..+.++.|.++ ++++++++|+.+....++..++..+..
T Consensus       335 ~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~~~~gp~~~g  378 (426)
T PRK12307        335 NVGVGGLVPKFLYDYFP-LEVRGLGTGLIYNLAATSGTFNSMAAT  378 (426)
T ss_pred             cccHhHHHHHHHHHhCc-HHHHhhhhhHHHHHHhHHHHHHHHHHH
Confidence            22333445566778884 445689999888888888777766543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.87  E-value=6.2e-20  Score=179.91  Aligned_cols=341  Identities=16%  Similarity=0.206  Sum_probs=217.9

Q ss_pred             cccchhHHHHHHHHHHhhhhhh----hHhhhhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHH
Q 012075           21 RYNSPLVQVCLIGLVCFCCPGM----FNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACS   96 (471)
Q Consensus        21 ~~~~~~~~~~~~~~~~f~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~   96 (471)
                      +.++.+..++.++++.|..-..    .+.+..+.++...+....+...+.+-.+.++++++...+.||+.||+.++....
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            3445666777777777654321    122344444444555666777778888889999999999999999999999998


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhcc
Q 012075           97 TYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYN  176 (471)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~  176 (471)
                      +|.+   ++..++.++|++.++++|++.|+..|..|.....+..++.||++|++++++......+..++|.-++..+.. 
T Consensus        87 lFi~---~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~-  162 (394)
T COG2814          87 LFIV---SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ-  162 (394)
T ss_pred             HHHH---HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH-
Confidence            8765   444445689999999999999999999999999999999999999999999999999999988777644432 


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHH--HhH
Q 012075          177 RNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASW--ASN  254 (471)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~  254 (471)
                         ..+||+. |+...++..+..+......||+...+        +++.+    .++.++.++||+++......+  +.+
T Consensus       163 ---~~GWR~~-F~~ia~l~ll~~~~~~~~lP~~~~~~--------~~~~~----~~~~~~~l~~p~v~~~l~~t~l~~~g  226 (394)
T COG2814         163 ---LFGWRAT-FLAIAVLALLALLLLWKLLPPSEISG--------SLPGP----LRTLLRLLRRPGVLLGLLATFLFMTG  226 (394)
T ss_pred             ---HhhHHHH-HHHHHHHHHHHHHHHHHhCCCccCCC--------CCCcc----hhHHHHHhcCchHHHHHHHHHHHHcc
Confidence               1245544 33334444444444444455222111        01111    234456788888765544333  233


Q ss_pred             h--Hhhhccccccc--cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhc
Q 012075          255 F--FYSYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQL  330 (471)
Q Consensus       255 ~--~~s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~  330 (471)
                      .  .|+|. ..++.  .+++....++..+.+|++.++|+.+.|++.||   +.|+.+......+... ....      . 
T Consensus       227 ~F~~ftYi-~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr---~~~~~l~~~~~l~a~~-~l~l------~-  294 (394)
T COG2814         227 HFALYTYI-RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR---GPRRALIAALLLLALA-LLAL------T-  294 (394)
T ss_pred             hhhhHHhH-HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc---cchhHHHHHHHHHHHH-HHHH------H-
Confidence            2  34555 34432  35566667888899999999999999999998   3444333332222111 1111      0 


Q ss_pred             ccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          331 NYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                       +.          .   .......+..+++++...........-+.+..+|.+  ..+.+++....++|.+++-.+...
T Consensus       295 -~~----------~---~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~--~~a~sl~~aa~nlgia~GA~lGG~  357 (394)
T COG2814         295 -FT----------G---ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAA--DLAGSLNVAAFNLGIALGAALGGL  357 (394)
T ss_pred             -Hh----------c---chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00          0   111223444444666654443322222444333443  567788888888888888776643

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.87  E-value=3.6e-20  Score=189.86  Aligned_cols=323  Identities=13%  Similarity=0.061  Sum_probs=182.8

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+....+..+++++.|++.||+|||+.+.++.+...+.....   ..+++.+.+++.|++.|++.|..++.
T Consensus        55 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~l~g~~~g~~~~~  131 (434)
T PRK11663         55 LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILF---GFSSSLWAFALLWVLNAFFQGWGWPV  131 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHccchH
Confidence            445556666777788888999999999999999999999998776533322   33678999999999999999988888


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHH-HHHHhccC-CCccc
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGA-LLSLVILP-PGRVI  212 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~-p~~~~  212 (471)
                      ...++.|+.|+++||+.+++++....+|..+|+.+...+...    .+|++..+ +..++..+.. +..+++++ |++.+
T Consensus       132 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~----~gw~~~f~-~~~i~~~~~~~~~~~~~~~~p~~~~  206 (434)
T PRK11663        132 CAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH----YGWRYGMM-IAGIIAIVVGLFLCWRLRDKPQAMG  206 (434)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccHHHHHH-HHHHHHHHHHHHHHHHcCCCHhhcC
Confidence            889999999999999999999999999999999876433221    23544433 2222222222 22233332 21110


Q ss_pred             -cC------CCCccccccCCCHHHHHHHHHH--HhcchhHHHHHHHHHHhHhHhh---hccccccc--cccccchhhhHH
Q 012075          213 -RD------DGTHCTNIKYSNVSTEITQVLK--LFSNWKMLLIFPASWASNFFYS---YQFNNVNG--LQFNLRTRGLNN  278 (471)
Q Consensus       213 -r~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~s---~~~~~~~~--~~~~~~~~~l~~  278 (471)
                       ++      ++++..++++ +.+.+.++.++  .+++|+++......+.....++   ..++.+..  .+++..+.+...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~  285 (434)
T PRK11663        207 LPSVGEWRHDALELAQQQE-GAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAV  285 (434)
T ss_pred             CCCcccccccccccchhcc-ccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence             00      0000000000 00001122222  3456666554433222222111   11233332  234444556666


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHH
Q 012075          279 VFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYF  358 (471)
Q Consensus       279 ~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (471)
                      ...+++.+++.++.|++.||..-+||+...........+....    .. ..  +        .     ..........+
T Consensus       286 ~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~----~~-~~--~--------~-----~~~~~~~~~~~  345 (434)
T PRK11663        286 SMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS----LW-LM--P--------F-----ASYVMQAACFF  345 (434)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH----HH-Hc--c--------c-----ccHHHHHHHHH
Confidence            6778999999999999999942122222111111110111111    10 00  1        0     11111222233


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          359 CYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       359 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ..|++....+....+...|.++ +++++++.|+.+....+|.+++-...
T Consensus       346 ~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~p~~~  393 (434)
T PRK11663        346 TIGFFVFGPQMLIGMAAAECSH-KEAAGAATGFVGLFAYLGAALSGYPL  393 (434)
T ss_pred             HHHHHHhhHHHHHHHHHHhccc-HhhHHhHHHHHHHHHHHHHHHhcccH
Confidence            3444333333334456677773 45668999999888888877765543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.87  E-value=1.1e-20  Score=195.41  Aligned_cols=354  Identities=13%  Similarity=0.035  Sum_probs=194.7

Q ss_pred             cccchhHHHHHHHHHHhhhhhh----h-HhhhhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHH
Q 012075           21 RYNSPLVQVCLIGLVCFCCPGM----F-NALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISAC   95 (471)
Q Consensus        21 ~~~~~~~~~~~~~~~~f~~~~~----~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~   95 (471)
                      .|+|.+..++.+.++.+....+    + .....+..+.+.++...+...+..+.+++++.++.|+++||+|||+.+.++.
T Consensus        22 ~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~  101 (467)
T PRK09556         22 MWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLL  101 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHH
Confidence            4555555555555555443211    1 1122223332334555566677778888999999999999999999998887


Q ss_pred             HHHHHHHHH--HHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075           96 STYVLYAGS--FLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus        96 ~~~~~~~~~--~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      +...+....  ......+++.+.+++.|++.|++.+..++....+++|+.|+++||+++|++.....+|.++|+.+....
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        102 ILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            665543222  111123578999999999999999999988899999999999999999999999999999998876322


Q ss_pred             hccCCCccccccchhHHHHHHHHHHHHHHHhccC--CCccccCCCCc-------ccc--c-c-CCCHHHHHHHHHHHhcc
Q 012075          174 NYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP--PGRVIRDDGTH-------CTN--I-K-YSNVSTEITQVLKLFSN  240 (471)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~~~r~~~~~-------~~~--~-~-~~~~~~~~~~~~~~~~~  240 (471)
                      ..... .+.|+ ..+....++.++..++.+++.+  |++.+..++++       .+.  . + +.+.++.++  .+.+++
T Consensus       182 ~~~~~-~~~~~-~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~  257 (467)
T PRK09556        182 ANYFF-DGHVI-GMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFV--EYVLKN  257 (467)
T ss_pred             HHhhc-cCcch-hHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHH--HHHHcC
Confidence            21100 01222 2233323333332233333322  32211000000       000  0 0 001111111  114567


Q ss_pred             hhHHHHHHHHHHhHhH---hhhccccccc--cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHH
Q 012075          241 WKMLLIFPASWASNFF---YSYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVA  315 (471)
Q Consensus       241 ~~~ll~~~~~~~~~~~---~s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~  315 (471)
                      |+++......+.....   .....+.+..  .+++..+.++......++.+++.++.|+++||  +|||+......... 
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr--~g~r~~~~~~~~~~-  334 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL--ANGRRALVACIALA-  334 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCchHHHHHHHH-
Confidence            7766555443332221   1112244432  23444455666667788999999999999999  78876543322211 


Q ss_pred             HHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 012075          316 LLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGV  395 (471)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  395 (471)
                      .+....    ....  .         +     .+.....+..++.|+...+.....+....|.++ +++++++.|+.+..
T Consensus       335 ~~~~~~----~~~~--~---------~-----~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~  393 (467)
T PRK09556        335 LIIFTL----GVYQ--H---------A-----TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTF  393 (467)
T ss_pred             HHHHHH----HHHH--h---------c-----CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHH
Confidence            111100    0100  0         0     111122334444554333333333345557773 44568999999988


Q ss_pred             HHH-HHHH
Q 012075          396 QSA-GAAV  402 (471)
Q Consensus       396 ~s~-g~~i  402 (471)
                      .++ |.++
T Consensus       394 g~l~g~~~  401 (467)
T PRK09556        394 AYLFGDSF  401 (467)
T ss_pred             HHHHhHHH
Confidence            775 4333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.86  E-value=4.1e-19  Score=180.37  Aligned_cols=349  Identities=11%  Similarity=0.022  Sum_probs=200.9

Q ss_pred             cchhHHHHHHHHHHhhhhhhhHhh----hhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHH
Q 012075           23 NSPLVQVCLIGLVCFCCPGMFNAL----SGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTY   98 (471)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~   98 (471)
                      ++++...+.+.+..++.....+..    ..+..+.+.++...+...+....+..++.++.|+++||+|||+.++++.+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            445555555555555443222211    1122222234455566677777888888999999999999999999998776


Q ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCC
Q 012075           99 VLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRN  178 (471)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~  178 (471)
                      .+.....   ..+++.+.+++.|++.|++.+...+....++.|..|+++|++.+++......+|..+||.++..+...  
T Consensus        89 ~~~~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~--  163 (406)
T PRK15402         89 ILTCLAI---LLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV--  163 (406)
T ss_pred             HHHHHHH---HHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence            6533322   23578999999999999999988888888899999999999999999888888999999886433221  


Q ss_pred             CccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---
Q 012075          179 EAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---  255 (471)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---  255 (471)
                        .+|++. ++...++.++..+...+..|+++ ++++       ++.+.++..++..+.+++|+++...........   
T Consensus       164 --~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (406)
T PRK15402        164 --LPWRGM-FVLFAALAALSFFGLWRAMPETA-GRVG-------EKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLL  232 (406)
T ss_pred             --cCccHH-HHHHHHHHHHHHHHHHHhCCCCC-cccc-------ccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence              235443 33333333333333333333221 1110       011111112223334567766554433322221   


Q ss_pred             Hhhhccccccc--cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccC
Q 012075          256 FYSYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYS  333 (471)
Q Consensus       256 ~~s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  333 (471)
                      .+....+.+..  .+++..+.++......++.+++.++.+++.||  ++||+....+...+ .++.....  .. .    
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r--~~~~~~~~~~~~~~-~~g~~~~~--~~-~----  302 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR--RPLRSLIRMGLWPM-VAGLLLAA--LA-T----  302 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHH-HHHHHHHH--HH-H----
Confidence            11111122222  12333334555555677888999999999999  78888665554433 22222211  10 0    


Q ss_pred             CCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          334 HDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                              ....  ..+....+..++++++.+...+...... .... +++++++.+.++..+.++.+++..+...
T Consensus       303 --------~~~~--~~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        303 --------VISS--HAYLWLTAGLSLYAFGIGLANAGLYRLT-LFSS-DVSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             --------Hccc--ccHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhc-cccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    0001  1222234455566776666555444333 2222 2456889999998888888887776554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.86  E-value=2.9e-19  Score=181.80  Aligned_cols=332  Identities=11%  Similarity=0.005  Sum_probs=187.9

Q ss_pred             hcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhh
Q 012075           48 GMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIG  127 (471)
Q Consensus        48 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g  127 (471)
                      .++.+...++...+...+..+.+.++++++.|++.||+|||+.+.++.+++.+.....   +.++|.+.++++|++.|++
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~  109 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTAT---MFATGPESLYLLRILVGIA  109 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHH
Confidence            3444433455666777888888999999999999999999999999998877643332   3468899999999999999


Q ss_pred             hhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCC--CccccccchhHHHHHHHHHHHHHHHhc
Q 012075          128 AGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRN--EAVSVNDGTYIGFMCFMSAGALLSLVI  205 (471)
Q Consensus       128 ~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~l  205 (471)
                      .+..+++...++.|+.|+++||+.+++++....+|..+|+.++..+.....  +..+||+.++ +..+..++..++..++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~-~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       110 EAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL-LEGFPSVILGVMTWFW  188 (412)
T ss_pred             HhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH-HHHHHHHHHHHHHhhc
Confidence            999988888999999999999999999999999999999998744331100  1124554433 3333333333333333


Q ss_pred             cC--CCccc--cCCCCcc------------ccccCC--CHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hh--hhccccc
Q 012075          206 LP--PGRVI--RDDGTHC------------TNIKYS--NVSTEITQVLKLFSNWKMLLIFPASWASNF-FY--SYQFNNV  264 (471)
Q Consensus       206 ~~--p~~~~--r~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~--s~~~~~~  264 (471)
                      .|  |++.+  ++++++.            ++++++  +.....++.++..++|.+++.....+.... .+  ...++.+
T Consensus       189 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  268 (412)
T TIGR02332       189 LDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQI  268 (412)
T ss_pred             cCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33  22110  0000000            000000  000011223343445555544433332221 11  1122444


Q ss_pred             ccc---ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCcc
Q 012075          265 NGL---QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKL  341 (471)
Q Consensus       265 ~~~---~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (471)
                      +..   +++..+.+.......++.++|.++.|+++||  ++||+...+.......+   .+.  .. ..  .        
T Consensus       269 l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr--~~~r~~~~~~~~~~~~~---~~~--~~-~~--~--------  330 (412)
T TIGR02332       269 LQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR--LKERKHHTALPYLFAAA---GWL--LA-SA--T--------  330 (412)
T ss_pred             HHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc--cCccHHHHHHHHHHHHH---HHH--HH-Hh--c--------
Confidence            432   2233345566777889999999999999999  67665322211111111   111  10 10  0        


Q ss_pred             CCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          342 DFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +  +  ...  ......+.+++.....+..+....|.+ ++++++++.|+.+.+..+|.+++-.+..
T Consensus       331 ~--~--~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       331 D--H--NLI--QLLGIIMASMGSFSAMAIFWTTPDQSI-SLQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             C--C--HHH--HHHHHHHHHHHhhhhhhHHHhhccccc-chHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            1  1  111  111111222222222222222334445 3556689999999998888877765443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.86  E-value=2.6e-19  Score=178.10  Aligned_cols=317  Identities=14%  Similarity=0.087  Sum_probs=195.3

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHhhhhhHHHh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNH--HKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~--~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      ++...+...+.......++++++|+++||+|||+.++++.++..+..........  .++.+.++++|++.|++.+..++
T Consensus        32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  111 (365)
T TIGR00900        32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP  111 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666777777888999999999999999999998766543322222111  12889999999999999999999


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcccc
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIR  213 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r  213 (471)
                      +..+++.|+.|+++|++.++++.....+|.++|+.++..+...    .+|++..+ ...+...+..+...++++|++.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  186 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT----LGIKWAIW-VDAVGFAISALLIVSVRIPELAAS  186 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHH-HHHHHHHHHHHHHHhcccccCCCc
Confidence            9999999999999999999999999999999999987444321    23443322 222222222223333333332111


Q ss_pred             CCCCccccccCCCHHHHHHHHHH-HhcchhHHHHHHHHHHhHhH----hhhcccccccc--ccccchhhhHHHHHHHHHH
Q 012075          214 DDGTHCTNIKYSNVSTEITQVLK-LFSNWKMLLIFPASWASNFF----YSYQFNNVNGL--QFNLRTRGLNNVFYWGAQM  286 (471)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~----~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i  286 (471)
                      + +++    .+++..++.++.++ .+++|+++......+.....    .....+.+...  +.+..+.+......+++.+
T Consensus       187 ~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (365)
T TIGR00900       187 E-IQA----LSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGAL  261 (365)
T ss_pred             c-ccc----cchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            1 110    01111222222222 34556554443332222211    11111232222  2333445666777889999


Q ss_pred             HHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHH
Q 012075          287 LGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAM  366 (471)
Q Consensus       287 ~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  366 (471)
                      ++.++.+++.||  .+||+....+.....   .....  ..    +.           .  ++.....+..++.|++.+.
T Consensus       262 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~---~~~~~--~~----~~-----------~--~~~~~~~~~~~~~g~~~~~  317 (365)
T TIGR00900       262 LGALLLGLLGRY--FKRMALMTGAIFVIG---LAILV--VG----LT-----------P--PNFPLFLVLWFAIGVGYGP  317 (365)
T ss_pred             HHHHHHHHHHHH--hchhHHHHHHHHHHH---HHHHH--HH----hh-----------c--hhHHHHHHHHHHHHHHHHH
Confidence            999999999998  678876554432221   11111  10    00           0  1123345667778888888


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          367 FQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       367 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ..+....++.+..+ +++++++.++++.+++++..++..+.
T Consensus       318 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~  357 (365)
T TIGR00900       318 INVPQGTLLQRRVP-AELLGRVFGAQFSLSHAAWPLGLILA  357 (365)
T ss_pred             HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888884 45668999999999888887776653

>TIGR00898 2A0119 cation transport protein

Probab=99.86  E-value=9.1e-20  Score=190.51  Aligned_cols=315  Identities=11%  Similarity=0.036  Sum_probs=186.8

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +...+...++.+.+..+++++.|+++||+|||++++++.++..+.....   +.++|++.++++|++.|++.+...+...
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~  202 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT---AFSPNYTVFLVFRLLVGMGIGGIWVQAV  202 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHhhccchHHHHH
Confidence            3445667778888889999999999999999999999988776533322   3468999999999999999999999999


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC-CCccc---
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP-PGRVI---  212 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-p~~~~---  212 (471)
                      .++.|+.|+++|++..+++.....+|.++++.+++.+.       .|++. +++..+..++..+..+++.+ |++..   
T Consensus       203 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------~wr~~-~~~~~i~~~~~~~~~~~~~esp~~l~~~~  274 (505)
T TIGR00898       203 VLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-------DWRWL-QLAVSLPTFLFFLLSWFVPESPRWLISQG  274 (505)
T ss_pred             HHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHCC
Confidence            99999999999999999999999999999998874332       24443 33333333333333333322 33321   


Q ss_pred             cCCCCccc-----c--cc--C-----CCHHHH---H---HHHHHHhcchhHHHHHHHHHHh--HhHhhhccccccccccc
Q 012075          213 RDDGTHCT-----N--IK--Y-----SNVSTE---I---TQVLKLFSNWKMLLIFPASWAS--NFFYSYQFNNVNGLQFN  270 (471)
Q Consensus       213 r~~~~~~~-----~--~~--~-----~~~~~~---~---~~~~~~~~~~~~ll~~~~~~~~--~~~~s~~~~~~~~~~~~  270 (471)
                      |.++++..     .  ..  .     ....++   -   ....+.+++|++..........  .....+.........++
T Consensus       275 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (505)
T TIGR00898       275 RIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG  354 (505)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence            11110000     0  00  0     000000   0   0122334455443332222111  11111110011111111


Q ss_pred             cchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCc
Q 012075          271 LRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDF  350 (471)
Q Consensus       271 ~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (471)
                      . .........++..+++.++.+++.||  +|||+....+..++++.. +..    ..   .+        +     ...
T Consensus       355 ~-~~~~~~~~~~~~~i~~~~~~~~l~dr--~grr~~~~~~~~~~~~~~-l~~----~~---~~--------~-----~~~  410 (505)
T TIGR00898       355 G-NIYLDLFISGLVELPAKLITLLLIDR--LGRRYTMAASLLLAGVAL-LLL----LF---VP--------V-----DLY  410 (505)
T ss_pred             C-ChHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHH-HHH----HH---cC--------C-----Cch
Confidence            1 12344456678888999999999999  899987766544332211 111    10   01        0     111


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          351 AGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       351 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ....+..++.+++.....+..+.+..|+++ ++.+++++|+.+.+..+|..++..+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~ig~~i~p~i~  466 (505)
T TIGR00898       411 FLRTALAVLGKFGITSAFQMVYLYTAELYP-TVVRNLGVGVCSTMARVGSIISPFLV  466 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence            122333444455555566677888899984 34458889988888888877776543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.85  E-value=2.4e-19  Score=182.77  Aligned_cols=313  Identities=13%  Similarity=-0.005  Sum_probs=184.8

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh--hcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYY--NHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~--~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      +...+...+.......+++++.|+++||+|||+.+.++.+...+........  ...++.+.+++.|++.|++.+...++
T Consensus        51 ~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  130 (417)
T PRK10489         51 TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTA  130 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666667777778889999999999999999988876554422221110  12457788999999999999988888


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ...++.|..|+++|+++.++.....++|..+|+.++..+...    .+|+|..+ ...+...+..++.+. .|+.+.+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~----~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~~~~  204 (417)
T PRK10489        131 LLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA----GGVAWNYG-LAAAGTFITLLPLLR-LPALPPPPQ  204 (417)
T ss_pred             HhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----HhhHHHHH-HHHHHHHHHHHHHHh-CCCCCCCCc
Confidence            888899999999999999999999999999999987433221    13444432 222222222222222 232111110


Q ss_pred             CCCccccccCCCHHHHHHHHHH-HhcchhHHHHHHHHHHhHhH--hhhcccccccc--ccccchhhhHHHHHHHHHHHHh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLK-LFSNWKMLLIFPASWASNFF--YSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~--~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                       +      +++. .++.++.++ .+++|++.......+.....  +...++.+...  +.+....++.....+++.+++.
T Consensus       205 -~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~  276 (417)
T PRK10489        205 -P------REHP-LRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA  276 (417)
T ss_pred             -c------cccc-hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH
Confidence             0      0111 112222222 34455543322221111111  11111333322  2343455666677889999999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      ++.+++.||  .++++.+..+.+.. .+....    +.    ..              ++.....++.+++|++.+...+
T Consensus       277 ~~~~~l~~~--~~~~~~l~~~~~~~-~~~~~~----~~----~~--------------~~~~~~~~~~~~~g~~~~~~~~  331 (417)
T PRK10489        277 LTSGWLAHS--ARPGLLMLLSTLGS-FLAVGL----FG----LM--------------PMWILAVLCLALFGYLSAISSL  331 (417)
T ss_pred             HHHHHhhhc--cCcchHHHHHHHHH-HHHHHH----HH----cc--------------chHHHHHHHHHHHHHHHHHHHH
Confidence            999999887  44444443333222 111111    10    00              1222345566667777777666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      ..+.++.+..+ ++.++++.|+++...++|.+++..+...
T Consensus       332 ~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        332 LQYTLLQTQTP-DEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             HHHHHHHhhCC-HHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence            66677777773 3456899999999888888888776543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.85  E-value=9.7e-20  Score=182.65  Aligned_cols=327  Identities=14%  Similarity=0.116  Sum_probs=191.1

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+.......++++++|+++||+|||+.+.++.+++.+.....   ..++|.+.++++|++.|++.+..++..
T Consensus        27 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~  103 (399)
T TIGR00893        27 SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ---AFAGAYVSLYILRVLLGAAEAPFFPGI  103 (399)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            34455666777778888899999999999999999999988776543332   235789999999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc-cc-
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV-IR-  213 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~-~r-  213 (471)
                      ..++.|+.|+++|++.++++.....+|..+|+.+...+...    .+|++. ++...++..+..+...++.|+++. ++ 
T Consensus       104 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (399)
T TIGR00893       104 ILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH----FSWQWA-FIIEGVLGIIWGVLWLKFIPDPPQKAKW  178 (399)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh----CCchHH-HHHHHHHHHHHHHHhhheecCCCCcccc
Confidence            99999999999999999999999999999999987444322    234433 333333333333333333332111 01 


Q ss_pred             CCCCccc----c---c--cCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhcccccccc--ccccchhhhHHH
Q 012075          214 DDGTHCT----N---I--KYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGL--QFNLRTRGLNNV  279 (471)
Q Consensus       214 ~~~~~~~----~---~--~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~--~~~~~~~~l~~~  279 (471)
                      .++++..    .   +  +++..+++.++..+.+++|+++......+....   .+...++.+...  +++..+.++...
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (399)
T TIGR00893       179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMAS  258 (399)
T ss_pred             CCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHH
Confidence            0000000    0   0  000000011122334566666554443332221   111111333222  233334566677


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHH
Q 012075          280 FYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFC  359 (471)
Q Consensus       280 ~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (471)
                      ..+++.+++.++.+++.||  ++||+..+................... ..           +..   .... ..+....
T Consensus       259 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~---~~~~-~~~~~~~  320 (399)
T TIGR00893       259 LPGIVGFIGMILGGRLSDL--LLRRGKSLVFARKTAIIAGLVLSLLMF-AT-----------NYV---NIPY-AALALVA  320 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHHHHHHH-Hh-----------ccc---hhHH-HHHHHHH
Confidence            7888999999999999999  677762222111111111111110010 00           101   1111 1222223


Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          360 YGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       360 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      .+....+..+..+.+..|..+ +++++++.++.+.+.+++..++-.+...
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~~i~g~  369 (399)
T TIGR00893       321 LGFFGLGAGAIGWALISDNAP-GNIAGLTGGLINSLGNLGGIVGPIVIGA  369 (399)
T ss_pred             HHHhchhhhhHHHHHHHhhcC-hhHHHHHHHHHHHHHHHhhhhhhHHhhh
Confidence            333333467778888899884 4456899999999998888888766543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.85  E-value=6.4e-25  Score=225.99  Aligned_cols=362  Identities=14%  Similarity=0.174  Sum_probs=200.4

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhccc---chHHHHHHHHHHhhhhhHHHhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHK---HQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~---~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      .....+..+.+..+|+++.|.++||+|||++++++.+++.+....   ...++   |.+.++++|++.|++.|...+..+
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSIL---IAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHhhhccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence            355677778888899999999999999999999999887663322   23456   899999999999999999999999


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC--CCccc--
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP--PGRVI--  212 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~~~--  212 (471)
                      .|+.|++|+++||+..++++..+.+|.+++.++.+......   ..+.|+....+..+..+..++..++.|  |+|+.  
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~  201 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS---DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSK  201 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccceeccc
Confidence            99999999999999999999999999999988875442211   112233333222222222222333445  66642  


Q ss_pred             -cCCCCcccc-------ccCCCHHH---H----------HHHHHHHhc-chhHHHHHHHHHHhHhH---hhhcccccccc
Q 012075          213 -RDDGTHCTN-------IKYSNVST---E----------ITQVLKLFS-NWKMLLIFPASWASNFF---YSYQFNNVNGL  267 (471)
Q Consensus       213 -r~~~~~~~~-------~~~~~~~~---~----------~~~~~~~~~-~~~~ll~~~~~~~~~~~---~s~~~~~~~~~  267 (471)
                       |.|+++...       .++++.++   +          +++.++..+ +++++....+...+.+.   ....+.+....
T Consensus       202 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~  281 (451)
T PF00083_consen  202 GRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE  281 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccc
Confidence             222221100       00000100   0          112222211 12333322222222221   01111111111


Q ss_pred             ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCC
Q 012075          268 QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG  347 (471)
Q Consensus       268 ~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (471)
                      ..+.+..-+.+...++..+++.++...+.||  +|||+..+.+..++.++...+. . .  .....++  +   ++.   
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~GRr~~~i~~~~~~~~~~~~~~-~-~--~~~~~~~--~---~~~---  347 (451)
T PF00083_consen  282 NAGISNSFLATLILGLVNFLGTLLAIFLIDR--FGRRKLLIIGLLLMAICSLILG-I-I--FFLGVSS--S---SWW---  347 (451)
T ss_pred             ccccccccccccccccccccccccccccccc--cccccccccccccccccccccc-c-c--ccccccc--c---ccc---
Confidence            1121122234455667777888877789999  8999988888766633322221 0 0  0011110  0   111   


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhH-HH--HHHHHHH
Q 012075          348 SDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLS-QL--VVNWSLT  424 (471)
Q Consensus       348 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~-~~--~~~~~~~  424 (471)
                       .+....+..++..++..++.+..+.+.+|+++. +.|+++.++...+..++..+.-.+    .|+.. ..  ...+.++
T Consensus       348 -~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt-~~R~~~~~~~~~~~~i~~~i~~~~----~~~~~~~~~~~~~~~i~  421 (451)
T PF00083_consen  348 -SILSIVFLALFFAFFSLGWGPLPWIYTAELFPT-KVRSTGIGLSYAVGRIGGFIIPFL----FPYLFNNLGGWGVFLIF  421 (451)
T ss_pred             -ccccceeeeeccccccccccccccccccccccc-cccccccccccccccccccccccc----cccccccccccccchhh
Confidence             222223333334455667777777788999932 233566655555443333333222    22211 11  1223334


Q ss_pred             HhhhhhhhheeeeeeccCCCccC
Q 012075          425 TISYPLLVILVLLAVKDEKSPEE  447 (471)
Q Consensus       425 ~~~~~~~i~~~~~~~pet~~~~~  447 (471)
                      ....+....+.++++|||+...-
T Consensus       422 ~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  422 AGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             HHHHHHHHhheeEEEeeCCCCCH
Confidence            44444555678899999977643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00897 2A0118 polyol permease family

Probab=99.85  E-value=1.7e-18  Score=175.70  Aligned_cols=319  Identities=14%  Similarity=0.109  Sum_probs=182.9

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHhhhhhHHHhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNH-HKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~-~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      ++...+...+.......++++++|++.||+|||+.+..+.+++.+........+. .++.+.+++.|++.|+|.+...+.
T Consensus        46 s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~  125 (402)
T TIGR00897        46 SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYS  125 (402)
T ss_pred             CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhH
Confidence            3445566667777778889999999999999999999999877664332221122 357888899999999999887777


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhh-hhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcccc
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGG-VIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIR  213 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~-~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r  213 (471)
                      ...++.+..|+++||+++|++++..++|. .+|+.++..+...    .+++...|.. .....+..++.+++.++++.++
T Consensus       126 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~----~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  200 (402)
T TIGR00897       126 FLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA----FGEMNTLWSA-LAFVLTGGVIALFSNKDIFTPQ  200 (402)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHH-HHHHHHHHHHHHhccCCCCCcc
Confidence            77778888899999999999999999997 5788776322211    1222222221 1122222233333333211111


Q ss_pred             CCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hh--hhccccccc-cccccchhhhHHHHHHHHHHHHh
Q 012075          214 DDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF-FY--SYQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~--s~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      +++      ++++..+..+.....+++|++++.....+.... .+  ....+.+.. .+++..+.+......+++.+++.
T Consensus       201 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~  274 (402)
T TIGR00897       201 HMQ------TREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFN  274 (402)
T ss_pred             ccc------CCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence            000      011111111222234567776554433322211 11  111133332 23343344555556788999999


Q ss_pred             hhhhhhcccCCCCccceeee-hhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFV-GIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQ  368 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  368 (471)
                      +..|++.||  ++||+.... +...+.......     ...   +        ....  .......+..+++|++.+...
T Consensus       275 ~~~g~l~dr--~~~~~~~~~~~~l~~~~~~~~l-----~~~---~--------~~~~--~~~~~~~~~~~~~G~~~~~~~  334 (402)
T TIGR00897       275 VIFGIVGDK--LGWMNTVRWFGGVGCGIFTLAL-----YYI---P--------QHFG--HSFAVALIIAIALGIFLAGYV  334 (402)
T ss_pred             HHHHHHHHh--hcchhHHHHHHHHHHHHHHHHH-----HHH---H--------HccC--CcHHHHHHHHHHHHHHHHHHH
Confidence            999999999  777775431 111111111111     100   0        0001  122233455666777776665


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          369 SMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       369 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +. .+.+.+..+  ++++++.|+.+....++..++..+..
T Consensus       335 ~~-~~~~~~~~~--~~~g~~~g~~~~~~~lg~~~gp~i~g  371 (402)
T TIGR00897       335 PL-AAVFPTLAP--KHKGAAMSVLNLSAGLSAFLAPAIAV  371 (402)
T ss_pred             HH-HHHHHhhCc--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53 345566553  35689999999998888877776554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.84  E-value=3.1e-18  Score=173.08  Aligned_cols=306  Identities=13%  Similarity=0.009  Sum_probs=181.4

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh-----cccchHHHHHHHHHHhhhhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN-----HHKHQAFAIAAGAILGIGAG  129 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~-----~~~~~~~li~~r~l~G~g~g  129 (471)
                      .++...+...+..+....++++++|+++||+|||+.++++.+...+.........     ..++.+.++++|+++|++.+
T Consensus        48 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  127 (392)
T PRK12382         48 FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGES  127 (392)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence            3455667778888888899999999999999999999998876554322221111     12467889999999999999


Q ss_pred             HHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC-C
Q 012075          130 LLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP-P  208 (471)
Q Consensus       130 ~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-p  208 (471)
                      ...++..+++.|..|+++|+++++++......|..+|+.++..+...    .+|++    .+.+..++..+...+.++ |
T Consensus       128 ~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~----~g~~~----~~~~~~~~~~~~~~~~~~~~  199 (392)
T PRK12382        128 QLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH----FGFAA----LALTTMVLPLLAWAFNGTVR  199 (392)
T ss_pred             HHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc----cChHH----HHHHHHHHHHHHHHHHHhcc
Confidence            98888888899999999999999999999999999999987433221    12221    111111112222222222 2


Q ss_pred             CccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhccccccccccccchhhhHHHHHHHHHHHH
Q 012075          209 GRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLG  288 (471)
Q Consensus       209 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~i~~i~g  288 (471)
                      +.. +++      +++++.++    ..+.+.++++............ ..+. +.+... .+....++.....+++.+++
T Consensus       200 ~~~-~~~------~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  265 (392)
T PRK12382        200 KVP-AHA------GERPSLWS----VVGLIWKPGLGLALQGVGFAVI-GTFV-SLYFAS-KGWAMAGFTLTAFGGAFVLM  265 (392)
T ss_pred             CCC-CCc------ccCchHHH----HHHHHHHhHHHHHHHHHHHhHH-HHHH-HHHHHh-cCCchhHHHHHHHHHHHHHH
Confidence            111 000      11122222    2222223333221111111111 1111 112111 12223344455677888899


Q ss_pred             hhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHH
Q 012075          289 SVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQ  368 (471)
Q Consensus       289 ~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  368 (471)
                      .+..|++.||  +|||+....+..... +.....    ..    .              ++.....+..++.+++.+...
T Consensus       266 ~~~~g~l~~r--~g~~~~~~~~~~~~~-~~~~~~----~~----~--------------~~~~~~~~~~~l~g~~~~~~~  320 (392)
T PRK12382        266 RVLFGWMPDR--FGGVKVAIVSLLVET-VGLLLL----WL----A--------------PTAWVALAGAALTGAGCSLIF  320 (392)
T ss_pred             HHHHHHHHHh--cCCCeehHHHHHHHH-HHHHHH----HH----c--------------ccHHHHHHHHHHHHHHHHhHH
Confidence            9999999999  788887665543331 111111    10    0              111223445566777777666


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          369 SMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       369 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +.......+.++ +++++++.|+++....++.+++-.+..
T Consensus       321 ~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~~~g  359 (392)
T PRK12382        321 PALGVEVVKRVP-SQVRGTALGGYAAFQDIAYGVSGPLAG  359 (392)
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666677763 456699999999988888888766554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.84  E-value=1.5e-18  Score=175.70  Aligned_cols=303  Identities=13%  Similarity=0.006  Sum_probs=174.8

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHhhhhhH
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHK-----HQAFAIAAGAILGIGAGL  130 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~-----~~~~li~~r~l~G~g~g~  130 (471)
                      ++...+...+..+....+++++.|+++||+|||++++++.+.+.+...........+     +.+.+++.|++.|++.+.
T Consensus        49 s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  128 (399)
T PRK05122         49 SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESL  128 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHh
Confidence            455566777788888899999999999999999999999987765332222211122     456789999999999999


Q ss_pred             HHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC-CC
Q 012075          131 LWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP-PG  209 (471)
Q Consensus       131 ~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-p~  209 (471)
                      ..++...++.|..|+++||++++++......|..+|+.++..+...    .+|++ .++...   .+..+..++.++ |+
T Consensus       129 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~g~~~-~~~~~~---~~~~~~~~~~~~~~~  200 (399)
T PRK05122        129 AGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW----GGLAG-LGLLIM---LLALLGLLLARPRPA  200 (399)
T ss_pred             hcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc----ccHHH-HHHHHH---HHHHHHHHHHhcCCC
Confidence            9888888889999999999999999999999999999987433221    12322 122211   112222222222 22


Q ss_pred             ccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhccccccccccccchhhhHHHHHHHHHHHHh
Q 012075          210 RVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       210 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      .. +++      +++++.++.+++.+    ........-...+.. ...+. +.+... .+....+.....++++.+++.
T Consensus       201 ~~-~~~------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~  266 (399)
T PRK05122        201 VP-PVK------GERLPFRRVLGRVW----PYGMGLALASIGFGT-IATFI-TLYYAA-RGWDGAALALTLFGVAFVGAR  266 (399)
T ss_pred             CC-CCC------ccchhHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHH-HHHHHH-cccccchHHHHHHHHHHHHHH
Confidence            11 000      01112222222111    111111000001111 11111 111111 121233444556788888999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      ++.+++.||  +|||+....+...+ .+....    ...    .              ++.....+..++.|++.+...+
T Consensus       267 ~~~g~l~~r--~~~~~~~~~~~~~~-~~~~~~----~~~----~--------------~~~~~~~~~~~l~G~~~~~~~~  321 (399)
T PRK05122        267 LLFGNLINR--LGGLRVAIVSLLVE-ILGLLL----LWL----A--------------PSPWMALIGAALTGFGFSLVFP  321 (399)
T ss_pred             HHHHHHHHH--hccHHHHHHHHHHH-HHHHHH----HHH----h--------------ccHHHHHHHHHHHHHhHHHHHH
Confidence            999999999  77887554443322 111111    110    0              1112234455677777776666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                      .......+..+ +++++++.++++....++.+++-.+
T Consensus       322 ~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        322 ALGVEAVKRVP-PQNRGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             HHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556653 4566899999998888887665444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.84  E-value=5.1e-18  Score=170.46  Aligned_cols=313  Identities=14%  Similarity=0.053  Sum_probs=188.4

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..++++++|+++||+|||+.+.++.++..+.....   ..+++.+.+++.|++.|++.+...+..
T Consensus        38 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~  114 (385)
T TIGR00710        38 PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL---ALSNNIETLLVLRFVQAFGASAGSVIS  114 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHcchhHHHHHH
Confidence            45555666777778888899999999999999999999988766533322   235788999999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..++.|+.|+++|++.+++.+....+|..+|+.++..+...    .+|++. ++...++..+..+...+..|+++. +++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~  188 (385)
T TIGR00710       115 QALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW----LSWHAI-FAFLSLAGILLSALIFFILPETLP-YEA  188 (385)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCHHHH-HHHHHHHHHHHHHHHHHhCCCCCC-Ccc
Confidence            99999999999999999999999999999999887433221    123332 223233333333333333332211 111


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhH-hHhh--hccccccc--cccccchhhhHHHHHHHHHHHHhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASN-FFYS--YQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~s--~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                              +++.++..++..+.+++|+++.......... ..+.  ...+.+..  .+++..+.++.....+++.+++.+
T Consensus       189 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  260 (385)
T TIGR00710       189 --------RIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGF  260 (385)
T ss_pred             --------cCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    0111122233334456666544332222111 1111  11122222  233444556666778889999999


Q ss_pred             hhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHH
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSM  370 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  370 (471)
                      +.+++.||  +|||+....+...+.. ......  .  .. .         . ..  ..+.......++.|++.+...+.
T Consensus       261 ~~g~l~~~--~~~~~~~~~~~~~~~~-~~~~~~--~--~~-~---------~-~~--~~~~~~~~~~~~~g~~~~~~~~~  320 (385)
T TIGR00710       261 LNGRFIKK--WGAKSLLRMGLILFAV-SAVLLE--I--TA-I---------L-GL--GSWAMIIGPMMFVGIGNSMISSI  320 (385)
T ss_pred             HHHHHHHh--cCHHHHHHHHHHHHHH-HHHHHH--H--HH-H---------h-cc--chHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999  7888876665443321 111111  0  00 0         0 00  11222344455667777776666


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHH-HHHHHhhhc
Q 012075          371 VYWVIGALADDSETLSRYSGFYKGVQSA-GAAVAWQVD  407 (471)
Q Consensus       371 ~~~~i~~~~~~~~~~~~~~~~~~~~~s~-g~~i~~~~~  407 (471)
                      ......|..+  ++++++.++++..... +...+..++
T Consensus       321 ~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       321 AMAYALEDFP--HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHhccCc--ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6656566553  3457888888877643 444444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.84  E-value=1.8e-18  Score=179.17  Aligned_cols=238  Identities=13%  Similarity=-0.000  Sum_probs=137.4

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +...+...+..+.+..+++++.|+++||+|||+.+.++.+...+.....   ..+++.+.++++|++.|++.+... ...
T Consensus        70 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~G~~~~~~~-~~~  145 (476)
T PLN00028         70 KSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM---SLVSSATGFIAVRFFIGFSLATFV-SCQ  145 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHhhH-HHH
Confidence            4444444556667777889999999999999999999887766533222   335788999999999999988654 345


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhh----cc-CCCccccccchhHHHHHHHHHHHHHHHhccCCCcc
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILN----YN-RNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV  211 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~  211 (471)
                      .+++|+.|+++||+++|+.....++|..+++.+...+.    .. ..+..+||+.++ +..++.++..++..++.++.+.
T Consensus       146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~-i~g~l~l~~~l~~~~~~~~~p~  224 (476)
T PLN00028        146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF-VPGLLHIIMGILVLTLGQDLPD  224 (476)
T ss_pred             HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH-HHHHHHHHHHHHHHHHcCcCCC
Confidence            67899999999999999998877777777765542111    00 000124554433 3333333333333333221111


Q ss_pred             ccCCCCccc-cccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhH-hHhh--hccccccc--cccccchhhhHHHHHHHHH
Q 012075          212 IRDDGTHCT-NIKYSNVSTEITQVLKLFSNWKMLLIFPASWASN-FFYS--YQFNNVNG--LQFNLRTRGLNNVFYWGAQ  285 (471)
Q Consensus       212 ~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~s--~~~~~~~~--~~~~~~~~~l~~~~~~i~~  285 (471)
                      .+.++.+.+ ..++++..+   ...+.+++++.+++....+... ..+.  ...+.+..  .+++....+......+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~  301 (476)
T PLN00028        225 GNYRELKKSGTMPKDSFSK---VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMN  301 (476)
T ss_pred             CchhhHHhcCccccccHHH---HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            000000000 001112222   2223456666554443322211 1111  11133322  2344445566677788999


Q ss_pred             HHHhhhhhhhcccCCCCcc
Q 012075          286 MLGSVGIGYIFDFSFPTRR  304 (471)
Q Consensus       286 i~g~~~~g~l~D~~~~gRr  304 (471)
                      +++.++.|+++||  ++||
T Consensus       302 ~ig~~~~G~lsDr--~~~r  318 (476)
T PLN00028        302 LFARPAGGYLSDV--AARR  318 (476)
T ss_pred             HHHHhhhHHHHHH--HHHh
Confidence            9999999999999  5655

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.84  E-value=6.1e-18  Score=171.10  Aligned_cols=305  Identities=12%  Similarity=0.070  Sum_probs=183.6

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+.......+++++.|+++||+|||+.++++.+++.+.....   ..+++.+.+++.|++.|++.+..++.
T Consensus        52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~  128 (394)
T PRK10213         52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLV---SFANSFSLLLIGRACLGLALGGFWAM  128 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH---HHHChHHHHHHHHHHHHHhhHHHHHH
Confidence            345555666677777788899999999999999999999999876633222   33688999999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ...++.|+.|+++|++++++++...++|..+||.++..+...    .+|++..+ ...++.++..+...... |+.. ++
T Consensus       129 ~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~----~gw~~~f~-~~~~l~~~~~l~~~~~~-p~~~-~~  201 (394)
T PRK10213        129 SASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL----IGWRNVFN-AAAVMGVLCIFWIIKSL-PSLP-GE  201 (394)
T ss_pred             HHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCHHHHHH-HHHHHHHHHHHHHHHHC-CCCC-cc
Confidence            999999999999999999999999999999999997444321    23444333 22222222221111112 2211 10


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHh--Hh--Hhhhccccccc-cccccchhhhHHHHHHHHHHHHh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWAS--NF--FYSYQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~--~~s~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      +        ++. .   ++.++.+++|+++......+..  ..  .+.+..+.+.. .+++....++.....+++.+++.
T Consensus       202 ~--------~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~  269 (394)
T PRK10213        202 P--------SHQ-K---QNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGT  269 (394)
T ss_pred             c--------ccc-h---hHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence            0        000 1   1123445677665443322211  11  11221122221 24454456677777889999999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      ++.+++.||  .+|+. ...+......+.....    . .   .              .+........+++|++....++
T Consensus       270 ~~~~~l~~r--~~~~~-l~~~~~~~~~~~~~l~----~-~---~--------------~~~~~~~~~~~l~G~~~~~~~~  324 (394)
T PRK10213        270 SLSSFILKR--SVKLA-LAGAPLVLAVSALVLT----L-W---G--------------SDKIVATGVAIIWGLTFALVPV  324 (394)
T ss_pred             HHHHHHHhc--cchhH-HHHHHHHHHHHHHHHH----H-H---h--------------hhHHHHHHHHHHHHHHHHhhhH
Confidence            999999998  33432 2222222111111111    0 0   0              1112234456667777777766


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      .....+.+..++  +.++..+....+.++|..++..+..
T Consensus       325 ~~~~~~~~~~~~--~~~~~~~~~~~~~~lg~~~G~~l~G  361 (394)
T PRK10213        325 GWSTWITRSLAD--QAEKAGSIQVAVIQLANTCGAAIGG  361 (394)
T ss_pred             HHHHHHHHHCcc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666566665533  2245555566666777777766554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.83  E-value=1.2e-18  Score=176.18  Aligned_cols=322  Identities=12%  Similarity=0.069  Sum_probs=185.3

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+.......++.++.|+++||+|||++++++.++..+.....   ..+++++.+++.|++.|++.+..++.
T Consensus        44 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~  120 (405)
T TIGR00891        44 LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLAC---GFAPGYITMFIARLVIGIGMGGEYGS  120 (405)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHhhhhhhhHH
Confidence            344555666777788889999999999999999999999988766533222   33688999999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc--c
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV--I  212 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~--~  212 (471)
                      ...++.|..|+++|+++++++.....+|.++|+.+...+....+  .+|++.. +...+...+. ++.....|+++.  +
T Consensus       121 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~--~~w~~~f-~~~~~~~~~~-~~~~~~~~~~~~~~~  196 (405)
T TIGR00891       121 SAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG--DGWRALF-FISILPIIFA-LWLRKNIPEAEDWKE  196 (405)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccHHHHH-HHHHHHHHHH-HHHHHhCCCChhHHH
Confidence            99999999999999999999999999999999988744432211  1243322 2222112211 122222232211  1


Q ss_pred             cCCCCcccc-------ccCCCHHHHHH----HHHHHhcchh--HHHHHHHHHHhHhHh---hhccccccc--cccccchh
Q 012075          213 RDDGTHCTN-------IKYSNVSTEIT----QVLKLFSNWK--MLLIFPASWASNFFY---SYQFNNVNG--LQFNLRTR  274 (471)
Q Consensus       213 r~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~~~--~ll~~~~~~~~~~~~---s~~~~~~~~--~~~~~~~~  274 (471)
                      ++++++...       .+++..++..+    +..+...+++  +..+.......++..   ...++.+..  .+++..+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  276 (405)
T TIGR00891       197 KHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTV  276 (405)
T ss_pred             HhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHH
Confidence            111100000       00000111111    1111111111  111111111111110   111122222  23344455


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHH
Q 012075          275 GLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPF  354 (471)
Q Consensus       275 ~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
                      +......+++.+++.++.+++.||  +|||+....+......   .... ..  .  ..              .......
T Consensus       277 ~~~~~~~~~~~~~g~~~~g~l~dr--~g~~~~~~~~~~~~~~---~~~~-~~--~--~~--------------~~~~~~~  332 (405)
T TIGR00891       277 ANIVVFSNIGAIVGGCVFGFLGDW--LGRRKAYVCSLLAGQL---LIIP-VF--A--IG--------------ANVAVLG  332 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCchhhhHHHHHHHHH---HHHH-HH--H--hC--------------CchHHHH
Confidence            666677889999999999999999  7898866554332211   1110 01  0  00              1112223


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          355 VLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       355 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +..++.++......+..+.++.|.++ ++++++++|+.+...+++..++..+..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g  385 (405)
T TIGR00891       333 LGLFFQQMLVQGIWGILPKHLGEYFP-TDQRAAGLGFTYQLGNLGGALAPIIGA  385 (405)
T ss_pred             HHHHHHHHHHccchhhHHHHHhhhCC-cchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33344455555555566677888884 345689999998888888877776554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.83  E-value=6.5e-19  Score=174.43  Aligned_cols=314  Identities=19%  Similarity=0.257  Sum_probs=187.7

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+.......+++++.|+++||+|||+.+.++.++..+......   .++|.+.++++|++.|++.+..+++.
T Consensus        30 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~  106 (352)
T PF07690_consen   30 SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA---FASNFWLLLIARFLLGIGSGFFSPAS  106 (352)
T ss_dssp             TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh---hhhhHHHHhhhccccccccccccccc
Confidence            444556667777777889999999999999999999999988776422222   23778899999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC-CCccccC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP-PGRVIRD  214 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-p~~~~r~  214 (471)
                      ..++.|+.|+++|++.+++.....++|..+|+.++..+. .   ..+|++. +++..++..+..++..++.+ +++.+++
T Consensus       107 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-~---~~~~~~~-~~~~~~~~~~~~il~~~~~~~~~~~~~~  181 (352)
T PF07690_consen  107 NALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-S---YFGWRWA-FLISAILSLIAAILFILFLPEPPPPRER  181 (352)
T ss_dssp             HHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C---HCHHCCH-HHHHHHHHHHHHHHHHCCC---STTTT-
T ss_pred             cccccccchhhhhhhccccccchhhhhhhcccchhhhhh-h---ccccccc-cccccchhhhhhhhHhhhhhhccccccc
Confidence            999999999999999999999999999999999974433 1   1235444 33334444444333223332 2211111


Q ss_pred             CCCccccccCCCHHHHHHHHHHHh-cchhHHHHHHHHHHhH--h-Hhhhccccccc--cccc-cchhhhHHHHHHHHHHH
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLF-SNWKMLLIFPASWASN--F-FYSYQFNNVNG--LQFN-LRTRGLNNVFYWGAQML  287 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~--~-~~s~~~~~~~~--~~~~-~~~~~l~~~~~~i~~i~  287 (471)
                      ++++ +  ++++.++++++.++.+ ++|.++......+...  . ......+.+..  .+++ ..+.+......+++.++
T Consensus       182 ~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  258 (352)
T PF07690_consen  182 ESPK-E--SESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGII  258 (352)
T ss_dssp             -SST-T--TT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred             cccc-c--cccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence            1100 0  0000111111211222 2332321111111111  1 11111133322  2333 23445556677888888


Q ss_pred             HhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHH
Q 012075          288 GSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMF  367 (471)
Q Consensus       288 g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  367 (471)
                      +.++.+++.||  +++|+........+. +....    +...            ...   .+.....+..++.|++.+..
T Consensus       259 ~~~~~~~l~~~--~~~~~~~~~~~~~~~-~~~~~----~~~~------------~~~---~~~~~~~~~~~~~g~~~~~~  316 (352)
T PF07690_consen  259 GSLLAGRLSDR--FGRRRRLLIAILLLI-LGALG----LLLL------------PFS---SSPVWLIIALFLIGFGFGIV  316 (352)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHH-HHHHH----HCCS------------HHH---CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCcHHHHHHHHHHHH-HHHHH----HHHH------------HHh---hhHHHHHHHHHHHHHHHHHH
Confidence            89999999999  777665544433221 11111    1000            001   11122445666788888888


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 012075          368 QSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVA  403 (471)
Q Consensus       368 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~  403 (471)
                      .+....++.+..+ +++++++.|+.+...+++..++
T Consensus       317 ~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  317 FPILFSLIQELVP-PEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             CHHHHHHHHCCCH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHC
Confidence            8888888888883 3456899999999888887764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.83  E-value=1.4e-18  Score=180.96  Aligned_cols=116  Identities=13%  Similarity=0.171  Sum_probs=97.0

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+..+.+..+++++.|+++||+|||+.++++.++..+.....   ..++|.+.++++|++.|++.+...+.
T Consensus        52 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~  128 (496)
T PRK03893         52 LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLAC---GFAPGYWTLFIARLVIGMGMAGEYGS  128 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666777778888899999999999999999999987766533222   23578999999999999999998888


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ...++.|..|+++|++.++++.....+|..+|+.+...+
T Consensus       129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893        129 SATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999887433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.83  E-value=2.5e-18  Score=179.11  Aligned_cols=352  Identities=13%  Similarity=0.028  Sum_probs=203.9

Q ss_pred             hhHHHHHHHHHHhhhhh----hhHhhhhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHH
Q 012075           25 PLVQVCLIGLVCFCCPG----MFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVL  100 (471)
Q Consensus        25 ~~~~~~~~~~~~f~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~  100 (471)
                      +|..+..+.+..|+...    ...+...+..+.+.++...+...+...++.+++.++.|+++||+|||+.++++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            44455555555554431    11223333333333444455666666677777889999999999999999999998876


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccC-CCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCC
Q 012075          101 YAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSY-PPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNE  179 (471)
Q Consensus       101 ~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~-~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~  179 (471)
                      ....+   +.++|.+.++++|+++|+|.+...+.....+.+. .|+++|++++|++.....+|..+||.++..+...   
T Consensus        84 ~~~~~---~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---  157 (495)
T PRK14995         84 ASLAA---AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---  157 (495)
T ss_pred             HHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Confidence            43332   3478999999999999999999877666656454 5789999999999999999999999997444322   


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccc-------------------cccCCCHH------------
Q 012075          180 AVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCT-------------------NIKYSNVS------------  228 (471)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~-------------------~~~~~~~~------------  228 (471)
                       .+|+|.+++ ...+..+..++..+..|+++.+++++.+..                   .....+.+            
T Consensus       158 -~gwr~~f~i-~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (495)
T PRK14995        158 -FYWGSVFLI-NVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL  235 (495)
T ss_pred             -CChHHHHHH-HHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence             346665443 222333333333344443221111100000                   00000000            


Q ss_pred             ------HHHHH-----HHHHhcchhHHHHHHHHHHhHh-Hh--hhccccccc--cccccchhhhHHHHHHHHHHHHhhhh
Q 012075          229 ------TEITQ-----VLKLFSNWKMLLIFPASWASNF-FY--SYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGSVGI  292 (471)
Q Consensus       229 ------~~~~~-----~~~~~~~~~~ll~~~~~~~~~~-~~--s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~~~  292 (471)
                            ++.+.     -++.+++|.+.......+.... .+  .+.++.+.+  .+++..+.++......++..++.++.
T Consensus       236 l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~  315 (495)
T PRK14995        236 LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA  315 (495)
T ss_pred             HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                  00000     0123444443332222222211 11  111133322  23455567787888899999999999


Q ss_pred             hhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHH
Q 012075          293 GYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVY  372 (471)
Q Consensus       293 g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  372 (471)
                      |++.||  +|||+....+.... .++....    ...   ..       +     .+........++.|++.+...+...
T Consensus       316 g~l~~r--~g~~~~~~~g~~~~-~~~~~~l----~~~---~~-------~-----~~~~~~~~~~~l~G~g~g~~~~~~~  373 (495)
T PRK14995        316 GILVSR--LGLRLVATGGMALS-ALSFYGL----AMT---DF-------S-----TQQWQAWGLMALLGFSAASALLAST  373 (495)
T ss_pred             HHHHHH--cCchHHHHHHHHHH-HHHHHHH----HHh---cC-------C-----CchHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999  78887665554333 1111111    101   10       1     1222234556677888777776666


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          373 WVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       373 ~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ....+.. ++++.+.+.++++..+.+|.+++-.+.
T Consensus       374 ~~~~~~~-~~~~~g~~~~~~~~~~~lG~~~G~ai~  407 (495)
T PRK14995        374 SAIMAAA-PPEKAAAAGAIETMAYELGAGLGIAIF  407 (495)
T ss_pred             HHHHhcC-CHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            5555555 345568889999998888888776543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.83  E-value=1.1e-18  Score=174.23  Aligned_cols=312  Identities=13%  Similarity=0.026  Sum_probs=183.1

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+..+.+..++++++|+++||+|||+++.++.++..+....   .+.++|.+.++++|++.|++.+..+...
T Consensus        36 s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~  112 (377)
T TIGR00890        36 GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTF---YAIADSLAALYLTYGLASAGVGIAYGIA  112 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence            4556677788888889999999999999999999999998877653322   2346889999999999999999887777


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHh-ccCCCccccC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLV-ILPPGRVIRD  214 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-l~~p~~~~r~  214 (471)
                      ..++.|+.| ++||++++++.....+|..+++.+.......    .+|++. ++...++..+..+...+ .++|++.+++
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (377)
T TIGR00890       113 LNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL----EGVPAA-FIYMGIIFLLVIVLGAFLIGYPPGQLIK  186 (377)
T ss_pred             HHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc----ccHHHH-HHHHHHHHHHHHHHHHHheecCchhccc
Confidence            777777765 6899999999999999887654443222211    234443 33333333333323333 3222221111


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhH---hhhccccccc-cccccchhhhHHHHHHHHHHHHhh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFF---YSYQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~s~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                      ++.     +.++..   ++..+.+++|+.+......+.....   ....++.+.. .+.+..+.+......+++.+++.+
T Consensus       187 ~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (377)
T TIGR00890       187 TNI-----EVSVKD---YTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRP  258 (377)
T ss_pred             cCc-----ccchhh---hhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            000     000001   1222345566554433322222111   1111112211 122333445666778889999999


Q ss_pred             hhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHH
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSM  370 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  370 (471)
                      +.|++.||  +|||+....+..++. +.....    . .  .+        +     ......+...++.++..+...+.
T Consensus       259 ~~g~l~dr--~g~~~~~~~~~~~~~-~~~~~~----~-~--~~--------~-----~~~~~~~~~~~~~g~~~g~~~~~  315 (377)
T TIGR00890       259 FLGALSDK--IGRQKTMSIVFGISA-VGMAAM----L-F--IP--------M-----LNDVLFLATVALVFFTWGGTISL  315 (377)
T ss_pred             HHHHHHHH--HhhhhhhhHHHHHHH-HHHHHH----H-H--cc--------c-----chhHHHHHHHHHHHHHhccchhc
Confidence            99999999  789887655544331 111111    0 0  00        1     11111222333445555555555


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          371 VYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       371 ~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ...++.|.++ +++++++.|+++....+|..++..+..
T Consensus       316 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g  352 (377)
T TIGR00890       316 FPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIAS  352 (377)
T ss_pred             cHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence            5667788873 345689999999888888887776544

>PRK09952 shikimate transporter; Provisional

Probab=99.83  E-value=2e-18  Score=177.16  Aligned_cols=102  Identities=16%  Similarity=0.170  Sum_probs=86.4

Q ss_pred             HHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchH--------HHHHHHHHHhhhhhHHHhhhhh
Q 012075           66 ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQA--------FAIAAGAILGIGAGLLWAAEGA  137 (471)
Q Consensus        66 ~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~--------~li~~r~l~G~g~g~~~~~~~~  137 (471)
                      +.+.+..+++++.|+++||+|||+++.++.+++.+.....   +.+++++        .++++|+++|++.|..+++...
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~  148 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALI---GLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL  148 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Confidence            4455667888999999999999999999998887644332   3367765        5889999999999999999999


Q ss_pred             hhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          138 IMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       138 ~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ++.|+.|+++||+..+..+....+|.+++..+.
T Consensus       149 ~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~  181 (438)
T PRK09952        149 LAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV  181 (438)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887664

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.83  E-value=4.4e-18  Score=174.30  Aligned_cols=105  Identities=18%  Similarity=0.173  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccch--------HHHHHHHHHHhhhhhHHHhh
Q 012075           63 ANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQ--------AFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        63 ~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~--------~~li~~r~l~G~g~g~~~~~  134 (471)
                      ..+..+.+..++++++|+++||+|||+++.++.+.+.+......   .++++        ..+++.|+++|+|.|..++.
T Consensus        68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~  144 (432)
T PRK10406         68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIA---CLPGYETIGTWAPALLLLARLFQGLSVGGEYGT  144 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh---hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence            34455666678999999999999999999999998876544332   24554        36899999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ..++++|+.|+++||++.++.+.....|..+++++.
T Consensus       145 ~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~  180 (432)
T PRK10406        145 SATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV  180 (432)
T ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888888888887765

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.83  E-value=1.4e-18  Score=178.97  Aligned_cols=320  Identities=11%  Similarity=0.069  Sum_probs=185.0

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHH-HHHHHhhhhhHHHhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIA-AGAILGIGAGLLWAAE  135 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~-~r~l~G~g~g~~~~~~  135 (471)
                      +...+...+..+....++.++.|+++||+|||+.++.+.++..+....+   +.+++.+.+++ .|++.|++.+..++..
T Consensus        53 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~l~G~~~~~~~~~~  129 (455)
T TIGR00892        53 YSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILA---SFSSNVIELYLTAGFITGLGLAFNFQPS  129 (455)
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHhcchhhhhHH
Confidence            4444555666666677888999999999999999999987766533222   33577887765 5799999999876666


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc---c
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV---I  212 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~---~  212 (471)
                      ..++.++. +++|++++|+.+....+|..+++.+...+...    .+|++.++ +..++.++..+..++++++...   .
T Consensus       130 ~~~~~~~~-~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~----~gwr~~f~-~~~~~~~~~~v~~~~~~~~~~~~~~~  203 (455)
T TIGR00892       130 LTMLGKYF-YRRRPLANGLAMAGSPVFLSTLAPLNQYLFES----FGWRGSFL-ILGGLLLHCCVCGALMRPVGPSQRVS  203 (455)
T ss_pred             HHHHHHHH-HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH----hChHHHHH-HHHHHHHHHHHHHHHhCCCCcccccc
Confidence            67777876 58999999999999999999888876333221    23554433 3333333333333344432111   0


Q ss_pred             cC---CCCc-c-cccc--CCCHHHHHHHH--HHHhcchhHHHHHHHHHHhHhH----hhhccccccc-cccccchhhhHH
Q 012075          213 RD---DGTH-C-TNIK--YSNVSTEITQV--LKLFSNWKMLLIFPASWASNFF----YSYQFNNVNG-LQFNLRTRGLNN  278 (471)
Q Consensus       213 r~---~~~~-~-~~~~--~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~----~s~~~~~~~~-~~~~~~~~~l~~  278 (471)
                      ++   ++.+ . ..++  ++...++.++.  ++.+++|+++......+..++.    +.+. +.+.. .+++....++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~  282 (455)
T TIGR00892       204 KSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFL-VPYAKDKGVDEYEAAFLL  282 (455)
T ss_pred             cccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHH-HHHHHHcCCCHHHHHHHH
Confidence            10   0000 0 0000  00111112211  2445667665544333322221    1111 22221 233444556666


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHH
Q 012075          279 VFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYF  358 (471)
Q Consensus       279 ~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (471)
                      ...+++.+++.++.+++.||++.++|+...++.... ..++....  ..    ..              .++....+..+
T Consensus       283 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~l~~ll--~~----~~--------------~~~~~~~i~~~  341 (455)
T TIGR00892       283 SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL-FNGLTHLL--CA----LA--------------GDYTGLVIYCI  341 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH-HHHHHHHH--HH----Hh--------------chHHHHHHHHH
Confidence            677888999999999999974333333222221111 11111100  00    00              12223445566


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          359 CYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       359 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ++|++.+...+..+.++.+..+ ++++++++|+++...++|..++-.+..
T Consensus       342 ~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G  390 (455)
T TIGR00892       342 FFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAG  390 (455)
T ss_pred             HHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHcccccee
Confidence            7788877777777888888873 345689999999998888888877654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.82  E-value=1.7e-18  Score=172.87  Aligned_cols=317  Identities=14%  Similarity=0.072  Sum_probs=175.7

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhccc-chHHHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHK-HQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~-~~~~li~~r~l~G~g~g~~~~  133 (471)
                      .++...+...+....+..++++++|+++||+|||+.++++.++..+.....   ..++ +++.++++|++.|++.+. ..
T Consensus        34 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~g~~~~~-~~  109 (366)
T TIGR00886        34 LSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA---GLAVQSYSVLLLLRLFIGIAGGS-FA  109 (366)
T ss_pred             CCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHhchh-hH
Confidence            445556667777788888999999999999999999999998776643332   2356 899999999999999765 45


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhc----cCC--CccccccchhHHHHHHHHHHHHHHHhccC
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNY----NRN--EAVSVNDGTYIGFMCFMSAGALLSLVILP  207 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  207 (471)
                      ....+++|+.|+++|++.++++....++|..+|+.+...+..    ..+  +..+|++..++...++..+..++.+++.+
T Consensus       110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  189 (366)
T TIGR00886       110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA  189 (366)
T ss_pred             hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence            567788999999999999999998888888877776532221    100  01246665534333333322222223322


Q ss_pred             CCccccCCCCccc-c-ccCCCHHHHHHHHHHHhcchhHHHHHHHHHHh-HhHh--hhcccccccc--ccccchhhhHHHH
Q 012075          208 PGRVIRDDGTHCT-N-IKYSNVSTEITQVLKLFSNWKMLLIFPASWAS-NFFY--SYQFNNVNGL--QFNLRTRGLNNVF  280 (471)
Q Consensus       208 p~~~~r~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~--s~~~~~~~~~--~~~~~~~~l~~~~  280 (471)
                      +++.+++++++.. . .+....++..++.++.+++|+.+......+.. ...+  ....+.+...  +++..+.++....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  269 (366)
T TIGR00886       190 DTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASL  269 (366)
T ss_pred             cCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            2211111111100 0 00000011122344455666654443322221 1111  1111233322  2334445555666


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHH
Q 012075          281 YWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY  360 (471)
Q Consensus       281 ~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (471)
                      ..+..+++.++.|++.||  +|||+....+..... +......  +  .  ..        + .   .+....+....+.
T Consensus       270 ~~~~~~~~~~~~g~l~~r--~g~~~~~~~~~~~~~-~~~~~~~--~--~--~~--------~-~---~~~~~~~~~~~~~  328 (366)
T TIGR00886       270 GGLLGSLARPLGGAISDR--LGGARKLLMSFLGVA-MGAFLVV--L--G--LV--------S-P---LSLAVFIVLFVAL  328 (366)
T ss_pred             HHHHHHHHhhccchHHHh--hccchhHHHHHHHHH-HHHHHHH--h--c--CC--------C-c---chHHHHHHHHHHH
Confidence            788889999999999999  788876554433221 1111110  0  0  00        0 0   0121122222333


Q ss_pred             HhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Q 012075          361 GLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSA  398 (471)
Q Consensus       361 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~  398 (471)
                      .+..+..++..+.+++++.+  ++.+++.|+.+.+.++
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       329 FFFSGAGNGSTFALVPHIFR--RATGAVSGLVGAIGNL  364 (366)
T ss_pred             HHHhccccchhhhcchhhch--hhcccHHHHHHHhccC
Confidence            33333444456667777774  4557888877766544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.82  E-value=4.3e-18  Score=176.08  Aligned_cols=232  Identities=16%  Similarity=0.067  Sum_probs=144.5

Q ss_pred             hhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           59 AANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ..+...+..+.++.++++++|+++||+|||+.+.++.++..+....... +...+.+.+++.|+++|++.+..+++...+
T Consensus        77 ~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~  155 (465)
T TIGR00894        77 LQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPW-AAGGGIALVVFCRVIQGLAQGSVSPATHKI  155 (465)
T ss_pred             HhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHH-HHHcCchHHHHHHHHHHHhcccchhhHHHH
Confidence            3355566777788889999999999999999999998877654333221 123567789999999999999999999999


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC--CCccccCCC
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP--PGRVIRDDG  216 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~~~r~~~  216 (471)
                      +.|+.|+++||++++++.....+|..+|+.+...+....   .+|++..+ +..++.++..++.+++.+  |+..+++++
T Consensus       156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~---~gw~~~f~-i~~~~~~~~~~~~~~~~~~~p~~~~~~~~  231 (465)
T TIGR00894       156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW---GGWPMIFY-VFGIVGCAWSLLWFVFPADDPSIHPCISK  231 (465)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCeehh-hhhHHHHHHHHHHHHHhcCCcccCCCCCH
Confidence            999999999999999999999999999999874443210   14554433 333333333333333322  221111110


Q ss_pred             Cccc------cc-c-CCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhH---hhhcccccccc--ccccchhhhHHHHHHH
Q 012075          217 THCT------NI-K-YSNVSTEITQVLKLFSNWKMLLIFPASWASNFF---YSYQFNNVNGL--QFNLRTRGLNNVFYWG  283 (471)
Q Consensus       217 ~~~~------~~-~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~s~~~~~~~~~--~~~~~~~~l~~~~~~i  283 (471)
                      ++.+      .+ + +++.+..+   .+.+++|+++......+...+.   +...++.+...  +++..+.++......+
T Consensus       232 ~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~  308 (465)
T TIGR00894       232 FEKKYINSSLQGQKGSTRQSLPI---KAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL  308 (465)
T ss_pred             HHHHHHHhhcccccCCCCCCCCH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence            0000      00 0 00001112   2334566665544433332221   11112444322  3444456676667788


Q ss_pred             HHHHHhhhhhhhccc
Q 012075          284 AQMLGSVGIGYIFDF  298 (471)
Q Consensus       284 ~~i~g~~~~g~l~D~  298 (471)
                      +.+++.++.|++.||
T Consensus       309 ~~~i~~~~~g~l~d~  323 (465)
T TIGR00894       309 FAWLCSIFAGYLADF  323 (465)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999999998

>TIGR00895 2A0115 benzoate transport

Probab=99.82  E-value=5.4e-18  Score=170.62  Aligned_cols=317  Identities=13%  Similarity=0.114  Sum_probs=185.0

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..+++++.|+++||+|||+.+.++.++..+.....   ..+++.+.+++.|++.|++.+...+..
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~  126 (398)
T TIGR00895        50 DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLC---ALATNVTQLLILRFLAGLGLGGLMPNL  126 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHccchHHHHHHHHHHhcccccchhhH
Confidence            34445555666667778889999999999999999999987765533222   235788999999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHH-HhccCC-Ccccc
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLS-LVILPP-GRVIR  213 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~p-~~~~r  213 (471)
                      .+++.|..|+++|++.++++.....+|..+|+.+...+...    .+|++..++ ..++..+..++. .+++++ ++..+
T Consensus       127 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  201 (398)
T TIGR00895       127 NALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV----FGWRSLFYV-GGIAPLLLLLLLMRFLPESIDFLVS  201 (398)
T ss_pred             HHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc----ccceeehhh-hhhHHHHHHHHHHHhCCCCChHHHh
Confidence            99999999999999999999999999999999886333211    234443332 222222222222 233222 11111


Q ss_pred             CCCCc-----------------cccccCCCHHHHHHHHHHHhcc----hhHHHHHHHHHHhHhH---hhhcccccc-ccc
Q 012075          214 DDGTH-----------------CTNIKYSNVSTEITQVLKLFSN----WKMLLIFPASWASNFF---YSYQFNNVN-GLQ  268 (471)
Q Consensus       214 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~---~s~~~~~~~-~~~  268 (471)
                      +++++                 ...++++...+..++..+.+++    ++.+............   .....+.+. ..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  281 (398)
T TIGR00895       202 KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG  281 (398)
T ss_pred             cCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            10000                 0000000001111222222222    2222211111111111   111112111 123


Q ss_pred             cccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCC
Q 012075          269 FNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGS  348 (471)
Q Consensus       269 ~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (471)
                      ++....++......++.+++.++.+++.||  +|||+.. .+..+...+....    .. .  .               .
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~-~~~~~~~~~~~~~----~~-~--~---------------~  336 (398)
T TIGR00895       282 FSLSLAATGGALFNFGGVIGSIIFGWLADR--LGPRVTA-LLLLLGAVFAVLV----GS-T--L---------------F  336 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchHHHH-HHHHHHHHHHHHH----HH-H--h---------------h
Confidence            344445666777889999999999999999  7887422 2222211111111    00 0  0               0


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          349 DFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       349 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                      +........++.|++.+...+..+.++.+.++ +++++++.|+.+.+..++.+++..+
T Consensus       337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYP-TAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11123455667788888888888888899884 4456889998888887777776554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.82  E-value=8.2e-18  Score=171.19  Aligned_cols=228  Identities=13%  Similarity=0.031  Sum_probs=147.1

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .+....+...++.+.+++++.+++|+++||+|||++++.+.+++.+.....   ..++|.+.++++|+++|++.+...+.
T Consensus        48 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~Gi~~~~~~~~  124 (413)
T PRK15403         48 ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT---LFTTSMTQFLIARFIQGTSICFIATV  124 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888889999999999999999999999999988776633322   34689999999999999999876666


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ...++.|..|+++|++.++++.....+|..+|+.++..+...    .+|++. |++..++..+..+...+..|+++ +++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~----~gw~~~-f~~~~~~~~i~~~~~~~~lp~~~-~~~  198 (413)
T PRK15403        125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF----VHWKVL-FAIIAVMGLIAFVGLLLAMPETV-KRG  198 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCHHHH-HHHHHHHHHHHHHHHHHhCCCCc-ccc
Confidence            778888999999999999999999999999999988544321    235543 33333333333333333333221 111


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hhhh--cccccccc--ccccchhhhHHHHHHHHHHHHh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF-FYSY--QFNNVNGL--QFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~s~--~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      ++       +.+.++..++..+.+++|+++........... .+++  ..+.+...  +++..+.++.......+.++++
T Consensus       199 ~~-------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~  271 (413)
T PRK15403        199 AV-------PFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN  271 (413)
T ss_pred             CC-------CCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            10       11122223444455677877655443332221 1111  12333322  3344445666666677888888


Q ss_pred             hhhhhhccc
Q 012075          290 VGIGYIFDF  298 (471)
Q Consensus       290 ~~~g~l~D~  298 (471)
                      .+.+++.++
T Consensus       272 ~l~~~~~~~  280 (413)
T PRK15403        272 AIVARFVKD  280 (413)
T ss_pred             HHHHHHhcc
Confidence            777776654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.82  E-value=8e-18  Score=168.91  Aligned_cols=242  Identities=13%  Similarity=0.044  Sum_probs=155.7

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..++.+++|+++||+|||+.+.++.++..+......   .+++.+.+++.|++.|++.+...+..
T Consensus        24 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~  100 (377)
T PRK11102         24 SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA---LAQTIDQLIYMRFLHGLAAAAASVVI  100 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556667777788889999999999999999999999987766433332   25788999999999999999998888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..++.|+.|+++|++.+++.+....+|..+|+.++..+...    .+|++. ++....+..+..++..+..|+++ ++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~  174 (377)
T PRK11102        101 NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW----FSWHAI-FWVLALAAILAAALVFFFIPETL-PKER  174 (377)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cChHHH-HHHHHHHHHHHHHHHHHhCCccC-cccc
Confidence            99999999999999999999999999999999987433221    134333 33333333333333333333221 1111


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hhhhc--cccccc--cccccchhhhHHHHHHHHHHHHhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF-FYSYQ--FNNVNG--LQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~s~~--~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                      +      ++.+.++..++..+.+++|+.+........... .+.+.  .+.+..  .+++..+.++......++.+++.+
T Consensus       175 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~  248 (377)
T PRK11102        175 R------QPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTI  248 (377)
T ss_pred             c------CCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            0      111222333333445566665443332222111 11111  011111  233444566677778889999999


Q ss_pred             hhhhhcccCCCCccceeeehhhhH
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIVVV  314 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~~~  314 (471)
                      +.+++.||  +|||+....+...+
T Consensus       249 ~~g~l~~r--~g~~~~~~~~~~~~  270 (377)
T PRK11102        249 INSRFVRR--VGALNMLRFGLWIQ  270 (377)
T ss_pred             HHHHHHHH--hCHHHHHHHHHHHH
Confidence            99999999  78998776665443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.82  E-value=5.5e-18  Score=175.95  Aligned_cols=322  Identities=15%  Similarity=0.073  Sum_probs=194.8

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..++.++.|+++||+|||+.++++.+++.+.....   ..++|.+.++++|++.|++.+...+..
T Consensus        35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~G~~~~~~~~~~  111 (485)
T TIGR00711        35 SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC---GVAPNLELMIIFRVIQGFGGGPLIPLS  111 (485)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHhhhhhHHHHH
Confidence            34445566667777788889999999999999999999998877643322   346899999999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..++.|+.|+++||++++++.....+|..+|+.++..+. .   ..+|+|..++. ..+..+..++..+..|+++.++++
T Consensus       112 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~---~~~w~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~  186 (485)
T TIGR00711       112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII-E---NYHWRWIFLIN-VPIGIIVVVVAFFILPRDKPAASE  186 (485)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc-c---CcCceehhhhh-hHHHHHHHHHHHHHcCCccccccC
Confidence            999999999999999999999999999999999874332 2   13466554432 223333333333333322111111


Q ss_pred             CCcc-----------------ccccCCCHH---------------------HHHH-----HHHHHhcchhHHHHHHHHHH
Q 012075          216 GTHC-----------------TNIKYSNVS---------------------TEIT-----QVLKLFSNWKMLLIFPASWA  252 (471)
Q Consensus       216 ~~~~-----------------~~~~~~~~~---------------------~~~~-----~~~~~~~~~~~ll~~~~~~~  252 (471)
                      +.+.                 ...+++.+.                     ++.+     ...+.+++|++.......+.
T Consensus       187 ~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (485)
T TIGR00711       187 NFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSL  266 (485)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHH
Confidence            0000                 000000000                     0000     00123444544333222222


Q ss_pred             hHh---Hhhhcccccccc--ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhh
Q 012075          253 SNF---FYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLA  327 (471)
Q Consensus       253 ~~~---~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~  327 (471)
                      .++   ...+.++.+...  +++..+.++.....+++.+++.++.|++.||  +|||+....+...+. ++....     
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~g~~~~~-~~~~~~-----  338 (485)
T TIGR00711       267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK--IDPRKLVTIGLILYA-VGFYWR-----  338 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCcHHHHHHHHHHHH-HHHHHH-----
Confidence            111   111112333322  3344456677777889999999999999999  789886655544331 111111     


Q ss_pred             hhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          328 NQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                       ......       +     ..+.......++.|++.+...+.......+.. ++++++++.++++..+.+|.+++..+.
T Consensus       339 -~~~~~~-------~-----~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       339 -AFTFTP-------D-----TPFLAIALPQFIRGFGMGCFFMPLTTIALSGL-PPHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             -hccCCC-------C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             000110       1     12222344556677777766655555554545 355679999999999999988887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.82  E-value=2.8e-18  Score=196.46  Aligned_cols=318  Identities=13%  Similarity=0.030  Sum_probs=187.1

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      .+...++..+...++++++|+++||+|||++++++.++..++.+.......+++.+.+++.|++.|++.+...++..+++
T Consensus        49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i  128 (1146)
T PRK08633         49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGII  128 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhh
Confidence            45556666777888999999999999999999998876655443333322346789999999999999999999999999


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccC--CCccccccchh---HHHHHHHHHHHHHHHhccCCCccccC
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNR--NEAVSVNDGTY---IGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      .|+.|+++|++++|++.....+|.++|+.++..+....  .....+.+..+   +......++++++. +..|+.+..+.
T Consensus       129 ~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  207 (1146)
T PRK08633        129 PELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFA-YRLPKVPAAAP  207 (1146)
T ss_pred             HHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHH-hcCcCCCCCCc
Confidence            99999999999999999999999999999874443210  00000111111   11111111222222 22232111111


Q ss_pred             CCCccccccCCCHHHHHHHHHH-HhcchhHHHHHHHHHHhH---hHhhhcccccccc--ccccc-hhhhHHHHHHHHHHH
Q 012075          215 DGTHCTNIKYSNVSTEITQVLK-LFSNWKMLLIFPASWASN---FFYSYQFNNVNGL--QFNLR-TRGLNNVFYWGAQML  287 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~---~~~s~~~~~~~~~--~~~~~-~~~l~~~~~~i~~i~  287 (471)
                      +..+  ..+.... ++.++.++ .+++|.++..........   ......++.+...  +++.. ..++.....+++.++
T Consensus       208 ~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~  284 (1146)
T PRK08633        208 EVFD--KKKYLFP-KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGI  284 (1146)
T ss_pred             cccc--ccccccH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            1000  0011111 12222222 334454443322221111   1111111333222  23333 456677778899999


Q ss_pred             HhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHH
Q 012075          288 GSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMF  367 (471)
Q Consensus       288 g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  367 (471)
                      +.++.+++.||  .++++...++.+++. +.....    .+               .   .+....+++.+++|++.+..
T Consensus       285 g~~~~g~l~~r--~~~~~~~~~~~~~~~-~~~~~~----~~---------------~---~~~~~~~~~~~~~g~~~~~~  339 (1146)
T PRK08633        285 GSLLAGRLSGR--HIELGLVPLGALGLA-LSLFLL----PT---------------A---PSLASVLVLFFLFGFSAGLF  339 (1146)
T ss_pred             HHHHHHHHhCC--ceEccchhHHHHHHH-HHHHHH----HH---------------h---hhHHHHHHHHHHHHHHHHHh
Confidence            99999999998  677766555543331 111111    00               0   12223455667778877777


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          368 QSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       368 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      .+....++.+..+ ++.+++++|+.+++++++..++..+.
T Consensus       340 ~~~~~~~~~~~~p-~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        340 IVPLNALIQFRAP-EKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             hHHHHHHHhhcCC-ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            7777777777773 33558999999998888876554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.82  E-value=4.4e-18  Score=172.06  Aligned_cols=308  Identities=10%  Similarity=0.038  Sum_probs=178.6

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +.......+.....+.+..+++|+++||+|||++++++.+++.+....+..   +.+   .++.|+++|++.+...++..
T Consensus        37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~---~~~---~~~~r~l~G~~~a~~~pa~~  110 (393)
T PRK11195         37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF---GIH---PLLAYGLVGIGAAAYSPAKY  110 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHH
Confidence            334455566666778888999999999999999999999987664333222   223   27899999999999999999


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchh-HHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTY-IGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      +++.|+.|+++|++++|+.+...++|.++||.++..+. .      +.+... .+......+.. +..+..|+++.++++
T Consensus       111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~-~------~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~~~~~  182 (393)
T PRK11195        111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA-D------PHAEAALAVCALIYLLAA-LFNLFIPRLGARRPG  182 (393)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHH-HHHhcCCCCcccccc
Confidence            99999999999999999999999999999999974332 1      112111 11111111121 222333322111110


Q ss_pred             CCccccccCCCHHHHHHHHHH-HhcchhHHHHHHH--HHHh-HhHhhhcccccccc--ccccchhhhHHHHHHHHHHHHh
Q 012075          216 GTHCTNIKYSNVSTEITQVLK-LFSNWKMLLIFPA--SWAS-NFFYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~--~~~~-~~~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      .+    .+.+...+++++.++ .+++|.+......  .++. .....+.++.+...  +.+..+.++.....+++.++++
T Consensus       183 ~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~  258 (393)
T PRK11195        183 QS----WNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA  258 (393)
T ss_pred             cC----CCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence            00    001111222222222 2344433222111  1111 11111111222221  2344456777788899999999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      +..+++.||  .++|+....+. .+   +.....  +..    .              +.++......++.|++.+..++
T Consensus       259 ~~~~~l~~~--~~~~~~~~~g~-~~---~~~~~~--~~~----~--------------~~~~~~~~~~~~~G~~~g~~~~  312 (393)
T PRK11195        259 GAAARLVTL--ETVLRVLPAGI-LM---GLVVLL--MAL----Q--------------HSLLPAYPLLILIGALGGFFVV  312 (393)
T ss_pred             HHHHHHhcC--CcccchHHHHH-HH---HHHHHH--HHH----H--------------hHHHHHHHHHHHHHHhhhhhhh
Confidence            999999997  56665444332 11   111111  100    0              1122234455567777777666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      .....+.+..++...++++.++.+..+.++..++..+..
T Consensus       313 ~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~  351 (393)
T PRK11195        313 PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS  351 (393)
T ss_pred             hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH
Confidence            666666665432222588999999999888888877654

>PRK10504 putative transporter; Provisional

Probab=99.81  E-value=1.3e-17  Score=172.64  Aligned_cols=321  Identities=12%  Similarity=0.011  Sum_probs=188.5

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..++.+++|+++||+|||+.++.+.+++.+....+   ..+++.+.++++|++.|++.+...+..
T Consensus        43 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~l~g~~~~~~~~~~  119 (471)
T PRK10504         43 SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC---ALSGTLNELLLARVLQGVGGAMMVPVG  119 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhhhHHHHHHH
Confidence            34444455566667778889999999999999999999887766533322   236789999999999999999999888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCc--ccc
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGR--VIR  213 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~--~~r  213 (471)
                      ..++.|..|+++|++..+++....++|..+|+.++..+...    .+|++.++ +...+..+..++.....|..+  .+|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~----~gw~~~f~-~~~~~~~l~~~~~~~~~~~~~~~~~r  194 (471)
T PRK10504        120 RLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY----ASWHWIFL-INIPVGIIGAIATLMLMPNYTMQTRR  194 (471)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh----ccHHHHHH-HHHHHHHHHHHHHHHhCCCccccCCC
Confidence            99999999999999999999999999999999987433221    23554333 222233333333333333111  112


Q ss_pred             CCCCcc--------------ccccCCCHH--------------------HHH-----HHHHHHhcchhHHHHHHHHHHhH
Q 012075          214 DDGTHC--------------TNIKYSNVS--------------------TEI-----TQVLKLFSNWKMLLIFPASWASN  254 (471)
Q Consensus       214 ~~~~~~--------------~~~~~~~~~--------------------~~~-----~~~~~~~~~~~~ll~~~~~~~~~  254 (471)
                      .|....              ...+...+.                    ++.     .-..+.+++|++.......+..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  274 (471)
T PRK10504        195 FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGR  274 (471)
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHH
Confidence            221000              000000000                    000     00123445565544433323222


Q ss_pred             hH---hhhcccccccc--ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhh
Q 012075          255 FF---YSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQ  329 (471)
Q Consensus       255 ~~---~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~  329 (471)
                      ..   ..+..+.+..+  +++....++......++.+++.++.+++.||  +|||+....+.....+.. ...    .. 
T Consensus       275 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r--~g~~~~~~~~~~~~~~~~-~~~----~~-  346 (471)
T PRK10504        275 IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR--FGYRRVLVATTLGLALVS-LLF----ML-  346 (471)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCchHHHHHHHHHHHHHH-HHH----Hh-
Confidence            11   11111222222  2333345566677788888888889999999  799987766554332111 111    10 


Q ss_pred             cccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          330 LNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                        .+        .  .  .......+..++.|++.+...+....+..+..+ +++.+.+.++.++.+.+|.+++-.+.
T Consensus       347 --~~--------~--~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        347 --VA--------L--L--GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLP-DNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             --cc--------c--c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHhccchHHHHHHHHHHHHHHHHHHH
Confidence              01        0  0  111112334445566666666666666777763 34568899999999888888876654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.81  E-value=1.8e-17  Score=166.87  Aligned_cols=300  Identities=14%  Similarity=0.095  Sum_probs=174.5

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+....+..+++++.|+++||+|||+.+.++.+.+.+.....   ..++|.+.++++|++.|++.+..++.
T Consensus        38 ~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~  114 (381)
T PRK03633         38 LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGL---GLMVGFWSWLAWRFVAGIGCAMIWVV  114 (381)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888888889999999999999999999999998776533322   33688999999999999999998877


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ....+.+..++++||+.++++....++|..+|+.+...+...     ..+...|.. ... ....+..++.+.+++.   
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~---  184 (381)
T PRK03633        115 VESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE-----LMSVLPWVT-GLV-LAAILPLLFTRILNQQ---  184 (381)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----ccchHHHHH-HHH-HHHHHHHHHhcccCCC---
Confidence            666667778899999999999999999999999987333211     111122221 111 1111222222222111   


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhH----hHhhhccccccc-cccccchhhhHHHHHHHHHHHHh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASN----FFYSYQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~~s~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      +++    +++++.    ++   .+++|+........+..+    ..+++. +.+.. .+.+....+.......++.+++.
T Consensus       185 ~~~----~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~  252 (381)
T PRK03633        185 AEN----HDSTSI----WP---MLKLRQARLGVNGCIISGIVLGSLYGLM-PLYLNHQGMSDASIGFWMALLVSAGILGQ  252 (381)
T ss_pred             CCC----CCCCCH----HH---HHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            000    011121    11   233343332221111111    112222 33332 23343345555566778889999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      ...|++.||  +|||+....+...+. +..+...         .        .     ..   ......++++......+
T Consensus       253 ~~~g~l~dr--~~~~~~l~~~~~~~~-~~~~~~~---------~--------~-----~~---~~~~~~l~g~~~~~~~p  304 (381)
T PRK03633        253 WPIGRLADR--FGRLLVLRVQVFVVI-LGSIAML---------S--------Q-----AA---MAPALFILGAAGFTLYP  304 (381)
T ss_pred             hhhHHHHHH--cCcHHHHHHHHHHHH-HHHHHHh---------h--------h-----HH---HHHHHHHHHHHHHhHHH
Confidence            999999999  788876655543331 1111110         0        0     00   11223334555555556


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      .......|..+ +++.+.+.+.++...++|.+++-.+..
T Consensus       305 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G  342 (381)
T PRK03633        305 VAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTA  342 (381)
T ss_pred             HHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555666653 334355566666656667766665544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.80  E-value=1.6e-17  Score=168.35  Aligned_cols=241  Identities=12%  Similarity=0.034  Sum_probs=145.7

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh--hcccchHHHHHHHHHHhhhhhHHH
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYY--NHHKHQAFAIAAGAILGIGAGLLW  132 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~--~~~~~~~~li~~r~l~G~g~g~~~  132 (471)
                      .++.+.....++..+.+++..+..|++.||+|+|+.+.++.+...+........  ...++++.+++.|++.|++ +..+
T Consensus        67 ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f  145 (462)
T PRK15034         67 FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANF  145 (462)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhH
Confidence            445566667777888888998888999999999999999998776543322210  0127899999999999998 6677


Q ss_pred             hhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH-----HhhccCC-C--------ccccccchhHHHHHHHHHH
Q 012075          133 AAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF-----ILNYNRN-E--------AVSVNDGTYIGFMCFMSAG  198 (471)
Q Consensus       133 ~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~-----~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~  198 (471)
                      ++....++++.|+++||+++|++...-++|..+++.+.-     .+....+ +        ...+++. .++...+.++.
T Consensus       146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~-~~~~~~~~iv~  224 (462)
T PRK15034        146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANA-AWIWVPLLAIA  224 (462)
T ss_pred             HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHH-HHHHHHHHHHH
Confidence            888888999999999999999997666666655544421     1111000 0        0011111 12222223333


Q ss_pred             HHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhH--h-Hhhhccccccccccccchhh
Q 012075          199 ALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASN--F-FYSYQFNNVNGLQFNLRTRG  275 (471)
Q Consensus       199 ~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~-~~s~~~~~~~~~~~~~~~~~  275 (471)
                      .++..++.++.+.           ++.+    +++..+.+++|+.+++..+.+.+.  + .+++.++.+....++.....
T Consensus       225 ~i~~~~~~~~~~~-----------~~~~----~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l  289 (462)
T PRK15034        225 TIAAWSGMNDIAS-----------SRAS----IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNIL  289 (462)
T ss_pred             HHHHHHhCCCccc-----------cccC----HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence            3334444332110           0112    234455678888776665544331  2 12333344433233221111


Q ss_pred             hHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhH
Q 012075          276 LNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVV  314 (471)
Q Consensus       276 l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~  314 (471)
                      .......+...+..+++|+++||  +|+|+...++.+.+
T Consensus       290 ~~~~l~~l~~~l~rplgG~LADR--iG~~~vl~~~~i~~  326 (462)
T PRK15034        290 RLAFFGPFIGAIARSVGGAISDK--FGGVRVTLINFIFM  326 (462)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHh--cCchHHHHHHHHHH
Confidence            22333456677888899999999  88998777776555

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.80  E-value=4.4e-17  Score=164.13  Aligned_cols=232  Identities=11%  Similarity=0.047  Sum_probs=151.7

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..++++++|++.||+|||+++.++.++..+....   ...++|.+.+++.|++.|++.+...+..
T Consensus        36 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l---~~~~~~~~~l~~~r~l~G~~~~~~~~~~  112 (382)
T PRK10091         36 SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM---FTLSSSYLMLAIGRLVSGFPHGAFFGVG  112 (382)
T ss_pred             CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHHHHhhhHHHHHHH
Confidence            4455567778888888999999999999999999999999887653322   2347899999999999999999988888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..++.|+.|+++|++.++++.....+|..+|+.++..+...    .+|++. |.+..++..+..+...+..| +..+++ 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~gwr~~-f~~~~~~~~~~~~~~~~~lp-~~~~~~-  185 (382)
T PRK10091        113 AIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE----FSWRYT-FLLIAVFNIAVLASIYFWVP-DIRDEA-  185 (382)
T ss_pred             HHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh----ccHHHH-HHHHHHHHHHHHHHHHHhCC-CCCccc-
Confidence            88899999999999999999999999999998886433211    235544 33333333332222223333 221111 


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHh--Hh--Hhhhccccccc--cccccchhhhHHHHHHHHHHHHh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWAS--NF--FYSYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~--~~s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                              +.+.++    .++.+++++.+.........  +.  ..++. +.+..  .+++..+.++.....+++.+++.
T Consensus       186 --------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~  252 (382)
T PRK10091        186 --------KGGLRE----QFHFLRSPAPWLIFAATMFGNAGVFAWFSYI-KPYMMFISGFSETSMTFIMMLVGLGMVLGN  252 (382)
T ss_pred             --------ccCHHH----HHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence                    111111    23345555544433222221  11  11222 22222  23444456677777889999999


Q ss_pred             hhhhhhcccCCCCccceeeehhh
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIV  312 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~  312 (471)
                      ++.+++.||  +|||+....+..
T Consensus       253 ~~~g~l~~r--~~~~~~~~~~~~  273 (382)
T PRK10091        253 LLSGRLSGR--YSPLRIAAVTDF  273 (382)
T ss_pred             HHHheeccc--cCchhHHHHHHH
Confidence            999999999  788876655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.80  E-value=1.1e-17  Score=171.67  Aligned_cols=245  Identities=14%  Similarity=0.069  Sum_probs=143.8

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN-HHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      .++...+...+....+..+++++.|+++||+|||+.+.++.+++.+......... ..++.+.+++.|++.|++.+..++
T Consensus        58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~  137 (438)
T TIGR00712        58 FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWP  137 (438)
T ss_pred             CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchH
Confidence            3455556667777888889999999999999999999998877665332221110 124567888999999999999888


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc--
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV--  211 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~--  211 (471)
                      ....++.|+.|+++||+++++++...++|..+++.+.......   ..+|++. +++..++.++..+...++.|+++.  
T Consensus       138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~~w~~~-f~~~~~~~~i~~~~~~~~~~~~~~~~  213 (438)
T TIGR00712       138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW---FNDWHAA-LYFPAICAIIVALFAFAMMRDTPQSC  213 (438)
T ss_pred             HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH---hhhhHHH-HHHHHHHHHHHHHHHHHhccCCHHhc
Confidence            8888899999999999999999999999998887664222211   1235443 333333333333333333332111  


Q ss_pred             c-cCCC---Ccc--ccccCCCHHHHHHHHH--HHhcchhHHHHHHHHHHhHh-Hh--hhccccccc--cccccchhhhHH
Q 012075          212 I-RDDG---THC--TNIKYSNVSTEITQVL--KLFSNWKMLLIFPASWASNF-FY--SYQFNNVNG--LQFNLRTRGLNN  278 (471)
Q Consensus       212 ~-r~~~---~~~--~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~-~~--s~~~~~~~~--~~~~~~~~~l~~  278 (471)
                      + ++++   ++.  ...++++.+.+.++.+  +.+++|+++........... .+  ....+.+..  .+++....++..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~  293 (438)
T TIGR00712       214 GLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAY  293 (438)
T ss_pred             CCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHH
Confidence            0 0000   000  0000000000112211  23456655544333222211 11  111234433  234444556767


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCccc
Q 012075          279 VFYWGAQMLGSVGIGYIFDFSFPTRRK  305 (471)
Q Consensus       279 ~~~~i~~i~g~~~~g~l~D~~~~gRr~  305 (471)
                      ...+++.+++.++.|++.||  ++|++
T Consensus       294 ~~~~~~~~ig~~~~g~l~dr--~~~~~  318 (438)
T TIGR00712       294 FLYEYAGIPGTLLCGWMSDK--VFKGN  318 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hccCc
Confidence            77888999999999999999  54443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11043 putative transporter; Provisional

Probab=99.80  E-value=9.4e-17  Score=162.74  Aligned_cols=308  Identities=13%  Similarity=0.070  Sum_probs=180.7

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+....+..++++++|+++||+|||+.+.++.+...+.....   ..+++.+.+++.|++.|++.+...+.
T Consensus        38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~  114 (401)
T PRK11043         38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM---LWVESAAQLLVLRFVQAVGVCSAAVI  114 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHhhhHHHHHH
Confidence            345566677778888888999999999999999999999987765532222   23578999999999999999888777


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ...++.|..++++|++..+..+....+|..+||.++..+...    .+|++. +....++..+..+..++++| ++.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~----~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  188 (401)
T PRK11043        115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH----FGWQAI-FATLFAITLLLILPTLRLKP-SKKARK  188 (401)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CChHHH-HHHHHHHHHHHHHHHHHcCC-CCCccc
Confidence            778889999999999999999888889999999887433211    234433 33333333333333333332 211110


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHH-hHhHhh--hccccccc-cccccchhhhHHHHHHHHHHHHhh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWA-SNFFYS--YQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~s--~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                               +++.+   ++..+.+++|+.+........ ...++.  ...+.+.. .+++....++......++.++|.+
T Consensus       189 ---------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~  256 (401)
T PRK11043        189 ---------QSQDA---LTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGY  256 (401)
T ss_pred             ---------cchHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                     00111   122334455554322221111 111111  11122222 234444456666677888889999


Q ss_pred             hhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHH
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSM  370 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  370 (471)
                      ..+++.||  ++||+....+...........+.  .. .  ..           .  +......+...+.++..+...+.
T Consensus       257 ~~~~l~~r--~~~~~~~~~~~~~~~~~~~~~~~--~~-~--~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
T PRK11043        257 GCRAALQK--WGGEQLLPWLLVLFAVSVIAIWL--AS-L--LS-----------H--PSLVPLLIPFCVMAAANGAIYPI  316 (401)
T ss_pred             HHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHH--HH-H--hc-----------c--CcHHHHHHHHHHHHHHHHHHHHH
Confidence            88999998  77877554443333222111111  10 0  00           0  12222333445566666666665


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhh
Q 012075          371 VYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQ  405 (471)
Q Consensus       371 ~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~  405 (471)
                      ......+..+  ++++++.++++.++..+...+-.
T Consensus       317 ~~~~~~~~~~--~~~g~~~g~~~~~~~~~~~~~~~  349 (401)
T PRK11043        317 VVAQALRPFP--QATGKAAALQNTLQLGLCFLASL  349 (401)
T ss_pred             HHHHHhhhCc--ccChHHHHHHHHHHHHHHHHHHH
Confidence            5545445453  34589999999887555444444

>PRK15075 citrate-proton symporter; Provisional

Probab=99.79  E-value=6.4e-17  Score=165.82  Aligned_cols=288  Identities=13%  Similarity=0.069  Sum_probs=159.0

Q ss_pred             HHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchH--------HHHHHHHHHhhhhhHHHhhhhhhhcc
Q 012075           70 TFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQA--------FAIAAGAILGIGAGLLWAAEGAIMTS  141 (471)
Q Consensus        70 ~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~--------~li~~r~l~G~g~g~~~~~~~~~i~~  141 (471)
                      ...+++++.|+++||+|||+.++.+.+.+.+.....   ..+++.+        .++++|+++|++.+..++....+++|
T Consensus        68 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  144 (434)
T PRK15075         68 MRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLI---AFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAE  144 (434)
T ss_pred             HhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHh
Confidence            335788999999999999999999999877644333   3356665        46899999999999998888899999


Q ss_pred             CCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccC----CCccccccchhHHHHHHHHHHHHHHHhcc--CCCccccCC
Q 012075          142 YPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNR----NEAVSVNDGTYIGFMCFMSAGALLSLVIL--PPGRVIRDD  215 (471)
Q Consensus       142 ~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~p~~~~r~~  215 (471)
                      +.|+++||+.++++....++|..+|+.++..+....    .+..+|++..+.  .++.   .+..++.+  +|+..+..+
T Consensus       145 ~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~--~~~~---~~~~~~~~~~~~e~~~~~~  219 (434)
T PRK15075        145 IATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLI--GCLI---VPFIFLIRRSLEETEEFLA  219 (434)
T ss_pred             hCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHH--HHHH---HHHHHHHHHhcCCCHHHHH
Confidence            999999999999999888888888777764332100    001234433221  1111   11112221  222110000


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHH-HHHHHhHh---Hhhhccccccc--cccccchhhhHHHHHHHHHHHHh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIF-PASWASNF---FYSYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~---~~s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      +     +++++.++.+++.   .++++.+... ...+....   ......+.+..  .+++..+.++.....+++.+++.
T Consensus       220 ~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  291 (434)
T PRK15075        220 R-----KHRPSMREIFRSL---AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL  291 (434)
T ss_pred             h-----hhccccccHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            0     0111111112221   2233332221 11111111   11111244432  23444455666777888999999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      ++.|++.||  +|||+....+...........    +...   .        +  +  +.........++.+++.+...+
T Consensus       292 ~~~g~l~Dr--~g~r~~~~~~~~~~~~~~~~~----~~~~---~--------~--~--~~~~~~~~~~~~~~~~~g~~~~  350 (434)
T PRK15075        292 PIGGALSDR--IGRRPVLIAFTVLAILTAYPA----LSWL---V--------A--A--PSFARMLAVELWLSFLYGSYNG  350 (434)
T ss_pred             HHHHHHHHH--hcchHHHHHHHHHHHHHHHHH----HHHH---H--------c--C--CchHHHHHHHHHHHHHHHHHHh
Confidence            999999999  789886654432221111100    0000   0        0  0  1111122223334455556666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHH
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGV  395 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~  395 (471)
                      ..+.++.|.+++. .++++.++.+++
T Consensus       351 ~~~~~~~e~~p~~-~rg~~~g~~~~~  375 (434)
T PRK15075        351 AMVVALTEVMPAE-VRTAGFSLAYSL  375 (434)
T ss_pred             hHHHHHHHHCCCC-ccchheeHHHHH
Confidence            5666788888433 447777775543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.79  E-value=9.2e-18  Score=167.68  Aligned_cols=322  Identities=16%  Similarity=0.084  Sum_probs=182.4

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..+++++.|+++||+|||+.++++.++..+.....   ..+++.+.+++.|++.|++.+...+..
T Consensus        28 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~  104 (379)
T TIGR00881        28 SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF---GFSTSLWVMAALWALNGIFQGMGWPPC  104 (379)
T ss_pred             CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHhhccccCCch
Confidence            34455666777778888899999999999999999999998776533332   235789999999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhh-HHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcccc-
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGG-LIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIR-  213 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r-  213 (471)
                      ..++.|+.|+++|++.+++......+|..+|+ ++...+...    .+|++. ++...++..+..++..++.|+++.++ 
T Consensus       105 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (379)
T TIGR00881       105 GRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL----YSWHWV-FIVPGIIAIIVSLICFLLLRDSPQSCG  179 (379)
T ss_pred             HHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc----CCchhH-HHHHHHHHHHHHHHHheeeCCCccccc
Confidence            99999999999999999999999999999999 455333321    234443 33333333333333333333221110 


Q ss_pred             --C-CCCccc-----cccCCCHHHHHHH-HHHHhcchhHHHHHHHHHHhHh---Hhhhccccccc--cccccchhhhHHH
Q 012075          214 --D-DGTHCT-----NIKYSNVSTEITQ-VLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNG--LQFNLRTRGLNNV  279 (471)
Q Consensus       214 --~-~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~--~~~~~~~~~l~~~  279 (471)
                        + ++.+.+     .+++++.++..+. ..+.+++|.++.+....+....   ......+.+..  .+++..+.++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  259 (379)
T TIGR00881       180 LPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFT  259 (379)
T ss_pred             cCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence              0 000000     0000000011111 1223455555443332222111   11111133322  2334445566677


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHH
Q 012075          280 FYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFC  359 (471)
Q Consensus       280 ~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (471)
                      ..+++.+++.++.+++.||.  .+|+............ ..... ..  .  ..        .  .  .+.....++.+.
T Consensus       260 ~~~~~~~~~~~~~g~l~~r~--~~~~~~~~~~~~~~~~-~~~~~-~~--~--~~--------~--~--~~~~~~~~~~~~  319 (379)
T TIGR00881       260 LYELGGLVGTLLAGWLSDKL--FNGRRGPLAVFFMALI-IVSLL-VY--W--LN--------P--A--ANPLMDLICLFA  319 (379)
T ss_pred             HHHHHcchhHHHHHHHHHHH--cCCcchHHHHHHHHHH-HHHHH-HH--h--cC--------c--c--hhHHHHHHHHHH
Confidence            78899999999999999983  2222222222111111 11100 00  0  00        0  0  111122334444


Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          360 YGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       360 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                      .|+......+..+.+..|..+ +++++++.|+++...+++..++-.+
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~  365 (379)
T TIGR00881       320 LGFLVYGPQMLIGVIASELAP-KKAAGTAAGFVGFFAYLGGILAGLP  365 (379)
T ss_pred             HHHHHhhhhHHHHHHHHHhcC-cchhHHHHHHHHHhhhhhhhhhhhh
Confidence            555544444555566788774 3456889998888887777665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.79  E-value=5.5e-17  Score=164.52  Aligned_cols=303  Identities=13%  Similarity=0.068  Sum_probs=177.3

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      +...+..+....+++++.|+++||+|||+.++++.+...+.....   ...++.+.+++.|++.|++.+. .+....++.
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  132 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM---GLAQNIWQFLILRALLGLLGGF-VPNANALIA  132 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHH
Confidence            445566677778889999999999999999999887766533222   2357889999999999998765 455566778


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccc
Q 012075          141 SYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCT  220 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~  220 (471)
                      |..|+++||++++++.....+|..+|+.+...+...    .+|++. +++..++..+..+...++.|++.. ++ ++   
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~---  202 (408)
T PRK09874        133 TQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS----YGLRPV-FFITASVLFLCFLVTLFCIRENFQ-PV-SK---  202 (408)
T ss_pred             HhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHHH-HHHHHHHHHHHHHHHHHHhccCcc-cc-cc---
Confidence            888999999999999999999999999887433211    134333 333333333333333333332211 10 00   


Q ss_pred             cccCCCHHHHHHHHHHHhcchhHHHHH-HHHHHhHhHhhh---cccccccc-ccccch----hhhHHHHHHHHHHHHhhh
Q 012075          221 NIKYSNVSTEITQVLKLFSNWKMLLIF-PASWASNFFYSY---QFNNVNGL-QFNLRT----RGLNNVFYWGAQMLGSVG  291 (471)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~s~---~~~~~~~~-~~~~~~----~~l~~~~~~i~~i~g~~~  291 (471)
                         ++  +.+.++.++.+++|+.+... ...+......+.   .++.+... ..+...    .+......+++.+++.+.
T Consensus       203 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~  277 (408)
T PRK09874        203 ---KE--MLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPR  277 (408)
T ss_pred             ---hh--hhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00  11123344555666543321 111111111110   11112111 111111    223334567788888888


Q ss_pred             hhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHH
Q 012075          292 IGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMV  371 (471)
Q Consensus       292 ~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  371 (471)
                      .|++.||  +|||+....+..... +....    .. .   .              .......+..++.|++.+...+..
T Consensus       278 ~g~l~dr--~g~~~~~~~~~~~~~-~~~~~----~~-~---~--------------~~~~~~~~~~~~~g~~~~~~~~~~  332 (408)
T PRK09874        278 LGKLGDR--IGPEKILITALIFSV-LLLIP----MS-F---V--------------QTPLQLGILRFLLGAADGALLPAV  332 (408)
T ss_pred             HHHHHhc--cccchhHHHHHHHHH-HHHHH----HH-H---h--------------ccHHHHHHHHHHHHhhhHhhHHHH
Confidence            9999999  788887665543321 11111    00 0   0              111223455566788887777766


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          372 YWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       372 ~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ...+.+.. +++++++.+++++..+.+|.+++..+..
T Consensus       333 ~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~gp~~~G  368 (408)
T PRK09874        333 QTLLVYNS-SNQIAGRIFSYNQSFRDIGNVTGPLMGA  368 (408)
T ss_pred             HHHHHHhC-CcccceeeehHHHHHHHHHHHhhHHHHH
Confidence            66665555 3345588889888888888888776654

>PRK10133 L-fucose transporter; Provisional

Probab=99.79  E-value=7.8e-17  Score=165.11  Aligned_cols=298  Identities=13%  Similarity=0.050  Sum_probs=177.1

Q ss_pred             cCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhh
Q 012075           49 MGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGA  128 (471)
Q Consensus        49 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~  128 (471)
                      ++.+...++...+...+..+.+..+++++.|++.||+|||+++.++.+++.+....+.....+++++.++++|++.|+|.
T Consensus        52 i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~  131 (438)
T PRK10133         52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGL  131 (438)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            33333345566677777888889999999999999999999999999988774433321234688999999999999999


Q ss_pred             hHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhh-ccCC-------------Cccccccc-------h
Q 012075          129 GLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILN-YNRN-------------EAVSVNDG-------T  187 (471)
Q Consensus       129 g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~-~~~~-------------~~~~~~~~-------~  187 (471)
                      |...++...++.|+.++++|++.+++++..+.+|..+|+.++..+. ...+             +...|++.       .
T Consensus       132 g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~  211 (438)
T PRK10133        132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTP  211 (438)
T ss_pred             HHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHH
Confidence            9999999999999877777777899999999999999998864322 1100             00012211       1


Q ss_pred             hHHHHHHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHH-HHHhHh---Hhhhcccc
Q 012075          188 YIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPA-SWASNF---FYSYQFNN  263 (471)
Q Consensus       188 ~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~---~~s~~~~~  263 (471)
                      |+....+..+..++..+.+.|+...  ++.+ . +++.+..++.+   +.+++|++...... +++...   .+++. +.
T Consensus       212 f~~~~~v~~~~~~~~~~~~~p~~~~--~~~~-~-~~~~~~~~~~~---~ll~~~~~~~~~l~~~~~~~~~~~~~~~~-~~  283 (438)
T PRK10133        212 YMIIVAIVLLVALLIMLTKFPALQS--DNHS-D-AKQGSFSASLS---RLARIRHWRWAVLAQFCYVGAQTACWSYL-IR  283 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCc--cccc-c-ccccchhhhHH---HHHhCchHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            1111111111111222222232111  1000 0 01111222222   33455654332221 122111   12222 33


Q ss_pred             cc-c--cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCc
Q 012075          264 VN-G--LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAK  340 (471)
Q Consensus       264 ~~-~--~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (471)
                      +. .  .+++....++....+.++.++|+.+.+++.||  +|||+....+..+. ...+..    .. .   .       
T Consensus       284 ~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r--~g~~~~l~~~~~~~-~~~~~~----~~-~---~-------  345 (438)
T PRK10133        284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIA-MALCLI----SA-F---A-------  345 (438)
T ss_pred             HHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHH-HHHHHH----HH-H---c-------
Confidence            32 2  23444456777788899999999999999999  78888765553322 111111    11 0   0       


Q ss_pred             cCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Q 012075          341 LDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALAD  380 (471)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  380 (471)
                             ++. .....+.++|++.+...|..+....+.++
T Consensus       346 -------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~  377 (438)
T PRK10133        346 -------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLG  377 (438)
T ss_pred             -------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence                   111 12345667899999999988888877773

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.79  E-value=1.8e-16  Score=160.24  Aligned_cols=237  Identities=15%  Similarity=0.114  Sum_probs=149.0

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..+++++.|+++||+|||+.++++.+.+.+.....   ..+++.+.++++|++.|++.+..++..
T Consensus        36 s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~  112 (392)
T PRK10473         36 SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC---SLAETSSLFLAGRFLQGIGAGCCYVVA  112 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHhhhhHHHHHH
Confidence            34444556666677778889999999999999999999988776533322   235788899999999999999988888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..++.|..|+++|++..++.+....+|..+||.++..+...    .+|++. +++..++..+..++.++..|+++.++++
T Consensus       113 ~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~----~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~  187 (392)
T PRK10473        113 FAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK----FPWQSL-FYTMAAMGILVLLLSLFILKETRPARAP  187 (392)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----cChHHH-HHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999999999999999887443211    234332 3333333333333333333332211110


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHh---HhHhhhccccccc--cccccchhhhHHHHHHHHHHHHhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWAS---NFFYSYQFNNVNG--LQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~~s~~~~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                             ++++..   ++..+.+++|+.+.........   ...+....+.+..  .+++....+......+++.+++.+
T Consensus       188 -------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  257 (392)
T PRK10473        188 -------AASSKP---RENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSF  257 (392)
T ss_pred             -------CccchH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                   011111   2222344555543322221111   1111111122221  233434456666778889999999


Q ss_pred             hhhhhcccCCCCccceeeehhh
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIV  312 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~  312 (471)
                      +.+++.||  +|||+....+..
T Consensus       258 ~~~~l~~r--~g~~~~~~~~~~  277 (392)
T PRK10473        258 STPFALGI--FKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHh--cCHHHHHHHHHH
Confidence            99999998  789887655543

>PRK03699 putative transporter; Provisional

Probab=99.78  E-value=1.5e-16  Score=160.95  Aligned_cols=306  Identities=14%  Similarity=0.097  Sum_probs=177.1

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+..+.+..++++++|++.||+|||+.++++.+...+.....   ..+++.+.+++.|++.|++.+...+.
T Consensus        39 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~l~G~~~g~~~~~  115 (394)
T PRK03699         39 LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL---MFSHSLALFSIAMFVLGVVSGITMSI  115 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHcchHHHHHHHHHHHHHhhHhhccc
Confidence            344555566677778888999999999999999999999988766533322   33678899999999999999988888


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ...++.|..|+++||+.++.......+|..++|.+...+...   ..+|++... ...++.++..++.++.++|+..+++
T Consensus       116 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~gw~~~f~-~~~~~~~~~~~~~~~~~~p~~~~~~  191 (394)
T PRK03699        116 GTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR---SIEWYWVYA-CIGLVYVAIFILTLFSEFPALGKHA  191 (394)
T ss_pred             hhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHH-HHHHHHHHHHHHHHhcCCccccccC
Confidence            888899999999999999998888888888888775333221   123544332 2222222222222332223311111


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhcccccccc--ccccchhhhHHHHHHHHHHHHh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      ++     ++++.    .+    ...+|++++.....+....   ......+.+...  +++..+.+.....+.++.+++.
T Consensus       192 ~~-----~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~  258 (394)
T PRK03699        192 PK-----ADKPV----AK----EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM  258 (394)
T ss_pred             cc-----ccCcc----cc----ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH
Confidence            00     00000    01    1123444333222221111   111112444422  3344455666667788899999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      ++.+++.||  ++||+......... .+.  ...  ..    ..        +  +  .  ....+..+.+|+..+...+
T Consensus       259 ~~~g~l~dr--~~~~~~l~~~~~~~-~~~--~~~--~~----~~--------~--~--~--~~~~~~~~~~G~~~~~~~~  313 (394)
T PRK03699        259 WIFSFIVRF--FDLQRILTVLAGLA-LVL--MYL--FV----NT--------D--D--P--SHLLYAILGLGFFSSAIYT  313 (394)
T ss_pred             HHHHHHHHH--hchhhHHHHHHHHH-HHH--HHH--HH----Hc--------C--C--c--hHHHHHHHHHHHHHHHHHH
Confidence            999999999  78887554433222 111  111  10    01        0  1  1  1123344556776666666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      .......+..++.+  ++..+.......+|..++..+.
T Consensus       314 ~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~i~p~~~  349 (394)
T PRK03699        314 TIITLGSQQTKVAS--PKLVNFILTCGTIGTMLTFVVT  349 (394)
T ss_pred             HHHHHHHHHccCCC--HHHHHHHHHhhhHHHHHHHHHH
Confidence            65556666553322  4556666666666766665543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.78  E-value=1.1e-16  Score=160.12  Aligned_cols=306  Identities=15%  Similarity=0.076  Sum_probs=168.2

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+..+.++.++++..|+++||+|||+.++.+.+....   +.......+|.+.++++|++.|+|.+.. ...
T Consensus        24 s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~g~~~~-~~~   99 (368)
T TIGR00903        24 SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAA---AAGRLLDPFNYEWLLACQLLAALGQPFL-LNA   99 (368)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH---HHHHHHHhccHHHHHHHHHHHHhHhHHH-HHH
Confidence            455556667778888999999999999999999987655544432   2211122368999999999999999964 445


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ...++|+.|+++|++++++.+....+|..+++.++..+...    .+||+. +....++..+..++..+..|+++..+++
T Consensus       100 ~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~----~gWr~~-f~~~~~l~~~~~~~~~~~lp~~p~~~~~  174 (368)
T TIGR00903       100 FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA----GGLQLL-IIPIAAVAAAGIILVLAALPALPFQAAE  174 (368)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHH-HHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            55568999999999999999999999999999887544321    245543 3333333333333333334432211110


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hhh--hccccccc-cccccchhhhHHHHHHHHHHHHhhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF-FYS--YQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGSVG  291 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~s--~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~~~  291 (471)
                      .       . +..+..++..+.+++|+++.+....+.... .++  ...++++. .+++.. .+.......+.   +.+.
T Consensus       175 ~-------~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~---g~~g  242 (368)
T TIGR00903       175 G-------F-GFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILA---GLIG  242 (368)
T ss_pred             C-------c-chHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHH---HHHH
Confidence            0       0 001112233345667777665544433221 111  11244443 233322 23332233333   3333


Q ss_pred             hhhhcccC-CCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHH
Q 012075          292 IGYIFDFS-FPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSM  370 (471)
Q Consensus       292 ~g~l~D~~-~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  370 (471)
                      .+++.||. +.+||+.........  ......  ...    +.        +  +  . .. ...+..+.+++.....+.
T Consensus       243 ~~~~~d~~~r~~~r~~~~~~~~~~--~a~~~~--~~~----~~--------~--~--~-~~-~~~~~~l~~~~~~~~~~~  300 (368)
T TIGR00903       243 VAVIPDRVARAGLRSIYIRAAALL--IAAFFL--ALA----FE--------L--N--R-LA-LFAFIGIAGLLMLPAYAI  300 (368)
T ss_pred             HHHhhHHhhhhhhHHHHHHHHHHH--HHHHHH--HHH----Hc--------c--c--c-HH-HHHHHHHHHHhhhhhHHH
Confidence            46778872 123333221111111  111110  010    00        0  1  1 11 222333344544445555


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhh
Q 012075          371 VYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQ  405 (471)
Q Consensus       371 ~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~  405 (471)
                      .+.+..|.++ ++.++++.|+.++...++...+-.
T Consensus       301 ~~~~~~~~~p-~~~rgt~~G~~~~~g~~~~~~~~~  334 (368)
T TIGR00903       301 IMDWIGKFCD-KELHGKAAGAIGFTSRAISVALAL  334 (368)
T ss_pred             HHHHHHHhcc-hhhcCcccchhhHHHHHHHHHHHH
Confidence            7778899983 335589999999988887755544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.78  E-value=2e-16  Score=164.48  Aligned_cols=223  Identities=13%  Similarity=0.100  Sum_probs=130.3

Q ss_pred             hhhchhhhhhhcc-----chhHH-HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCC
Q 012075           73 IFGILGGGIYNIL-----GPQVT-LISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPN  146 (471)
Q Consensus        73 i~~~~~g~l~d~~-----Grk~~-l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~  146 (471)
                      +++++++|++||+     |||+. ++++.+...+...........++.+.+.+.|++.|++.+...+...++..|+.|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5789999999999     99986 44555544432222212111356788999999999999998888999999999999


Q ss_pred             chhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccCCC
Q 012075          147 RKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSN  226 (471)
Q Consensus       147 ~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~  226 (471)
                      +||+..++......+|.++|+.+...+..+   ..+|+.. |++..++..+..+..++.++|+.  ++++++   ..+++
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~---~~GWr~~-f~i~a~l~ll~~l~~~~~~e~~~--~~~~~~---~~~~~  210 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADR---YLGWQGM-YWLMAALLIPCIIATLLAPEPTD--TIPVPK---TLEQA  210 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCHHHH-HHHHHHHHHHHHHHHHhcCCCcc--cccccc---chhhh
Confidence            999999999999999999998876443321   1234443 33333333333333333332221  111000   00111


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHH-Hh-H--hHhhhccccccc--cccccchhhhHHH-HHHHHHHHHhhhhhhhcccC
Q 012075          227 VSTEITQVLKLFSNWKMLLIFPASW-AS-N--FFYSYQFNNVNG--LQFNLRTRGLNNV-FYWGAQMLGSVGIGYIFDFS  299 (471)
Q Consensus       227 ~~~~~~~~~~~~~~~~~ll~~~~~~-~~-~--~~~s~~~~~~~~--~~~~~~~~~l~~~-~~~i~~i~g~~~~g~l~D~~  299 (471)
                      ..+++++   .+++++.+......+ +. .  ..++.. +++..  .+++..+.++... ...++.++|.++.|++.|| 
T Consensus       211 ~~~~l~~---~~~~~~~~~~ll~~~l~~~~~~~~~~~~-~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-  285 (491)
T PRK11010        211 VVAPLRD---FFGRNNAWLILLLIVLYKLGDAFAMSLT-TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-  285 (491)
T ss_pred             HHHHHHH---HHcCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            1222333   334444332222111 11 1  111111 23321  2445445555543 3457889999999999999 


Q ss_pred             CCCccceeeeh
Q 012075          300 FPTRRKRGFVG  310 (471)
Q Consensus       300 ~~gRr~~~~~g  310 (471)
                       +|||+...++
T Consensus       286 -~g~~~~l~i~  295 (491)
T PRK11010        286 -LSLFRALMIF  295 (491)
T ss_pred             -HhHHHHHHHH
Confidence             7887755443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.77  E-value=2.3e-17  Score=168.65  Aligned_cols=236  Identities=14%  Similarity=0.121  Sum_probs=164.9

Q ss_pred             hhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhh
Q 012075           58 TAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGA  137 (471)
Q Consensus        58 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~  137 (471)
                      +.-+...++.|.+++++.+.++.+.||+.-.+.+....+++.++.....  . .+|.+.+++.|++.|+..|..|++...
T Consensus        81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~--~-~~s~~~~ialr~llGl~es~~wP~~~~  157 (495)
T KOG2533|consen   81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTA--A-VHSFPGLIALRFLLGLFESGGWPGVVA  157 (495)
T ss_pred             hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHH--H-HhhhHHHHHHHHHHHHHhcccchHHHH
Confidence            3446678889999999999999999999988888888877766442211  1 589999999999999999999999999


Q ss_pred             hhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCC--ccccccchhHHHHHHHHHHHHHHHhccC--CCc--c
Q 012075          138 IMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNE--AVSVNDGTYIGFMCFMSAGALLSLVILP--PGR--V  211 (471)
Q Consensus       138 ~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~--~  211 (471)
                      +++.+..+++||+-+|++++..++|+++|+++++++....+.  ..+|+|. |++-.++.....++.+++.|  |++  .
T Consensus       158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~-FiI~G~i~~~~gi~~f~~lp~~P~~~~f  236 (495)
T KOG2533|consen  158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWL-FIIEGVITLVLGIVVFFFLPDNPSKAWF  236 (495)
T ss_pred             HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceee-hhHHHHHHHHHHheEEEEecCChhhccc
Confidence            999999999999999999999999999999999885432211  2345554 44444455544444555555  442  1


Q ss_pred             ccCCCC-----cccc----ccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhH---hhhcccccccc--ccccchhhhH
Q 012075          212 IRDDGT-----HCTN----IKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFF---YSYQFNNVNGL--QFNLRTRGLN  277 (471)
Q Consensus       212 ~r~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~s~~~~~~~~~--~~~~~~~~l~  277 (471)
                      ..++|.     +.+.    ..+++  .+.++..+.+++|+++......+++...   .++.++.++..  +++..+..+.
T Consensus       237 l~~~ek~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~l  314 (495)
T KOG2533|consen  237 LTDEEKELVVERLRESPSGGIENK--FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLL  314 (495)
T ss_pred             cchHHHHHHHHHHHhccCCCcccc--cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccc
Confidence            111110     0000    00111  2345667778999998877766655431   22222333322  2444456677


Q ss_pred             HHHHHHHHHHHhhhhhhhcccC
Q 012075          278 NVFYWGAQMLGSVGIGYIFDFS  299 (471)
Q Consensus       278 ~~~~~i~~i~g~~~~g~l~D~~  299 (471)
                      ++.+.++.+++.+++|.++||.
T Consensus       315 s~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  315 STPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             cchHHhhhHHHHHHHHHHHHHH
Confidence            8889999999999999999993

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.77  E-value=1.9e-16  Score=160.52  Aligned_cols=307  Identities=13%  Similarity=0.089  Sum_probs=176.2

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+.......+.++++|+++||+|||+.++++.+...+......   ..++.+.+++.|++.|++.+..+++.
T Consensus        44 s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~g~~~~~~~~~~  120 (400)
T PRK11646         44 AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA---IAHEPWLLWLSCILSGLGGTLFDPPR  120 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555566666679999999999999999999988776443332   35788999999999999999888888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      .+++.|..|+++||+++|+.....++|..+||.++..+. .    .+|++..+ +..+..++..++..+..|+++.++  
T Consensus       121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~----~g~~~~f~-~~~~~~~~~~i~~~~~~~~~~~~~--  192 (400)
T PRK11646        121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q----YDFRLVCA-TGAVLFVLAAAFNAWLLPAYKLST--  192 (400)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hhHHHHHH-HHHHHHHHHHHHHHHhCCcccccc--
Confidence            888999999999999999999999999999999874333 2    13443333 222232322223233333321100  


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhcccccccc-ccccchhhhHHHHHHHHHHHHhhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGL-QFNLRTRGLNNVFYWGAQMLGSVG  291 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~-~~~~~~~~l~~~~~~i~~i~g~~~  291 (471)
                             ++++.++.++   +.+++|+++...........   .....++.+... ..+..+.+......+++.+.+...
T Consensus       193 -------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  262 (400)
T PRK11646        193 -------VRTPVREGMT---RVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYP  262 (400)
T ss_pred             -------cchhhHHHHH---HHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence                   0111222222   33455655433222111111   011111333222 223233444444455555555555


Q ss_pred             hhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHH
Q 012075          292 IGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMV  371 (471)
Q Consensus       292 ~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  371 (471)
                      .+++.||+ ++.++....+.... .+....    +..    .              +++.......++++.+.....+..
T Consensus       263 ~~~~~~~r-~~~~~~~~~~~~~~-~~~~~~----l~~----~--------------~~~~~~~~~~~l~~~g~~~~~p~~  318 (400)
T PRK11646        263 IARWSEKR-FRLEHRLMAGLLIM-SLSMFP----IGM----V--------------SNLQQLFTLICLFYIGSIIAEPAR  318 (400)
T ss_pred             HHHHHHHh-cchhHHHHHHHHHH-HHHHHH----HHH----h--------------hhHHHHHHHHHHHHHHHHHHHccH
Confidence            56666652 44444333332222 111111    100    0              111122333445666666666666


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          372 YWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       372 ~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ..++.+..+ +++++++.|+++...++|.+++..+..
T Consensus       319 ~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~ig~~l~G  354 (400)
T PRK11646        319 ETLSASLAD-ARARGSYMGFSRLGLALGGAIGYIGGG  354 (400)
T ss_pred             HHHHHhcCC-cccchhhhhHHHHHHHHHHHhcccchH
Confidence            667777773 446689999998888888887766554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.76  E-value=1.2e-16  Score=157.72  Aligned_cols=285  Identities=20%  Similarity=0.236  Sum_probs=191.8

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+.......+++++.|+++||+|||+.+.++.+...+......   ..++.+.++++|++.|++.+..++..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~  108 (352)
T cd06174          32 SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA---FASSLWLLLVGRFLLGLGGGALYPAA  108 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHcccccccHhH
Confidence            345556666777777888999999999999999999999987766443332   24789999999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..++.|+.|+|+|++.+++......+|..+|+.+...+...    .+|++. +....++.++..+...++.         
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~---------  174 (352)
T cd06174         109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES----LGWRWL-FLILAILGLLLALLLLFLL---------  174 (352)
T ss_pred             HHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH----hhHHHH-HHHHHHHHHHHHHHHHHHH---------
Confidence            99999999999999999999999999999999987544321    123332 2232333333322222221         


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhcccccccc--ccccchhhhHHHHHHHHHHHHhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                                               |+++......+....   .+....+.+...  +++..+.+......+++.+++.+
T Consensus       175 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (352)
T cd06174         175 -------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGAL  229 (352)
T ss_pred             -------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                     222211111111111   111111222222  23444566777888999999999


Q ss_pred             hhhhhcccCCCCccc-eeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          291 GIGYIFDFSFPTRRK-RGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      +.+++.||  .|||+ ....+..... +......     .              .   .+........++.+++.+...+
T Consensus       230 ~~~~~~~~--~~~~~~~~~~~~~~~~-i~~~~~~-----~--------------~---~~~~~~~~~~~~~g~~~~~~~~  284 (352)
T cd06174         230 LGGLLSDR--LGRRRLLLLIGLLLAA-LGLLLLA-----L--------------A---PSLALLLVALLLLGFGLGFAFP  284 (352)
T ss_pred             HHHHHHHH--HHhhhHHHHHHHHHHH-HHHHHHH-----H--------------h---ccHHHHHHHHHHHHHHHhccch
Confidence            99999999  78887 5555544331 1111110     0              0   1122356677788888888888


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ....++.|..+ ++++++.+++.+..++++..++..+..
T Consensus       285 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         285 ALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             hHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899884 356699999999999998888877654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.76  E-value=1.4e-16  Score=159.94  Aligned_cols=305  Identities=16%  Similarity=0.106  Sum_probs=165.7

Q ss_pred             HHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchH--------HHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           68 YTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQA--------FAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        68 ~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~--------~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      +....+++++.|+++||+|||+++.++.+++.+.....   ..+++.+        .++++|+++|++.+..++....++
T Consensus        45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  121 (394)
T TIGR00883        45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI---GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYL  121 (394)
T ss_pred             HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHh
Confidence            33345678999999999999999999998776533222   2245543        588999999999999999999999


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCC--ccccccch-hHHHHHHHHHHHHHHHhccCCCcc-ccCC
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNE--AVSVNDGT-YIGFMCFMSAGALLSLVILPPGRV-IRDD  215 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~i~~~~l~~p~~~-~r~~  215 (471)
                      .|..|+++||+..++......+|.++|+.+........++  ...+.|+. +++..++..+..++. ...|+++. ++++
T Consensus       122 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  200 (394)
T TIGR00883       122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR-RNLEETPVFEKAQ  200 (394)
T ss_pred             hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHH
Confidence            9999999999999999999999999998876433211000  01122222 222222222221111 11121111 1110


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHh---hhcccccccc--ccccchhhhHHHHHHHHHHHHhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFY---SYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                      ++  .++++++    .++.++.. +++++......+.....+   ....+.+...  +.+....+.......++.+++.+
T Consensus       201 ~~--~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  273 (394)
T TIGR00883       201 EK--HKKKRGP----IRETLTKH-RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIP  273 (394)
T ss_pred             hc--cccccCC----HHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence            00  0011112    22222211 112333322222222111   1111333222  23333455566677888999999


Q ss_pred             hhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHH
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSM  370 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  370 (471)
                      +.|++.||  +|||+....+..++..+.....   ....   .           .  ..........++.++..+...+.
T Consensus       274 ~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~---~~~~---~-----------~--~~~~~~~~~~~~~g~~~~~~~~~  332 (394)
T TIGR00883       274 LSGALSDR--IGRRPVLIIFTVLAALLAVPLL---MALL---D-----------S--GSFTLFFFLVLGLALIGGMYTGP  332 (394)
T ss_pred             HHHHHHHH--hchHHHHHHHHHHHHHHHHHHH---HHHh---c-----------C--CchHHHHHHHHHHHHHHHHHhhh
Confidence            99999999  7888865433322211111111   1000   0           0  11222344556667777777777


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHH-HHHHHHHHHHhh
Q 012075          371 VYWVIGALADDSETLSRYSGFYK-GVQSAGAAVAWQ  405 (471)
Q Consensus       371 ~~~~i~~~~~~~~~~~~~~~~~~-~~~s~g~~i~~~  405 (471)
                      ...++.|.+++ ++++++.++.. ....++..++-.
T Consensus       333 ~~~~~~~~~p~-~~~~~~~~~~~~~~~~~g~~~~p~  367 (394)
T TIGR00883       333 MGSFLPELFPT-EVRYTGASLAYNLAGAIFGGFAPY  367 (394)
T ss_pred             HHHHHHHhCCc-cceeeEeeehhHhHHHHHhhHHHH
Confidence            88888999843 23466666533 223344444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.76  E-value=9e-17  Score=168.61  Aligned_cols=110  Identities=9%  Similarity=0.131  Sum_probs=95.6

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      ........++.+++..+|++++|+++|++|||++++++.+++.++....   +.++|++.+++.|++.|++.+...+...
T Consensus       117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~---a~a~~~~~~~~~Rfl~G~~~~~~~~~~~  193 (521)
T KOG0255|consen  117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT---AFAPNYWMFLIFRFLSGFFGSGPLTVGF  193 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence            4456778889999999999999999999999999999999888755333   4589999999999999999999999999


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .+++|+.++++|+....+ ......+..+++...
T Consensus       194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~  226 (521)
T KOG0255|consen  194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGA  226 (521)
T ss_pred             hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHH
Confidence            999999999999999999 666666666666654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.75  E-value=5.7e-16  Score=156.59  Aligned_cols=310  Identities=13%  Similarity=0.049  Sum_probs=179.3

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+.......++++++|+++||+|||+.+.++.+...+.....   ..+++.+.+++.|++.|++.+...+.
T Consensus        40 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~~~~~~  116 (394)
T PRK11652         40 VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA---LFAHSLTVLIAASAIQGLGTGVGGVM  116 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHhhhhHHHHH
Confidence            345555666777788888999999999999999999999988766533322   23578999999999999999987777


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ...+..|..++++|+++.+++.....+|..+||.++..+...    .+|++..+ ...+...+..++..++.|+++. + 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~----~g~~~~f~-~~~~~~~~~~~~~~~~~~~~~~-~-  189 (394)
T PRK11652        117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL----FGWRACYL-FLLLLGAGVTFSMARWMPETRP-A-  189 (394)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cChHHHHH-HHHHHHHHHHHHHHHhCCccCc-c-
Confidence            777888888999999999999999999999999887433211    23443332 2222222222222233332211 1 


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHH--HHHHhHh--Hhhhcccccccc--ccccchhhhHHHHHHHHHHHH
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFP--ASWASNF--FYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLG  288 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~--~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g  288 (471)
                       ++     ++++.++.++   +.+++|+++....  .....+.  +.... +.+...  +++....++......++.+++
T Consensus       190 -~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g  259 (394)
T PRK11652        190 -DA-----RRTRVLASYR---TLLSNRRFNCYLLMLIGTLAGIAVFEACS-GVLMGAVLGLSSMTVSILFILPIPAAFFG  259 (394)
T ss_pred             -cc-----chhHHHHHHH---HHHcChHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence             00     1111222222   2344554432211  1111111  11111 222222  223334455566677888888


Q ss_pred             hhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHH
Q 012075          289 SVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQ  368 (471)
Q Consensus       289 ~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  368 (471)
                      +.+.+++.||  .+|+.  ..+...+ .+...... ....    .        .  .  ..........++++++.+...
T Consensus       260 ~~~~~~l~~~--~~~~~--~~~~~~~-~~~~~~~~-~~~~----~--------~--~--~~~~~~~~~~~~~~~g~~~~~  317 (394)
T PRK11652        260 AWFAGRPNKR--FSTLM--WQSVICC-LLAGLLMW-IPGW----F--------G--V--MNVWTLLVPAALFFFGAGMLF  317 (394)
T ss_pred             HHHHHHHHHH--HHHHH--HHHHHHH-HHHHHHHH-HHHH----h--------c--c--ccHHHHHHHHHHHHHHHHHHH
Confidence            8888888887  34322  1221111 11111111 0000    0        0  0  111223444556677777777


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          369 SMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       369 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +.......+..+  ++.+++.++.+..+++|.+++-.+..
T Consensus       318 ~~~~~~~~~~~~--~~~g~~~~~~~~~~~lg~~~~~~~~~  355 (394)
T PRK11652        318 PLATSGAMEPFP--YLAGTAGALLGGLQNIGSGLAALLSA  355 (394)
T ss_pred             HHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666666663  45578888888888888887776554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.75  E-value=9e-16  Score=153.68  Aligned_cols=306  Identities=13%  Similarity=0.078  Sum_probs=167.7

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHH-HHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACST-YVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~-~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      ++...+...+.......+.+++.|+++||+|||+.+++.... ..+..  .. .+.+++++.+++.|++.|.+.+...+.
T Consensus        31 s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~~~~p~  107 (375)
T TIGR00899        31 RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC--LL-FAWNRNYFLLLVLGVLLSSFASTANPQ  107 (375)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH--HH-HHhcchHHHHHHHHHHHHhhhhhhHHH
Confidence            344445555555566677788999999999999877664433 32211  12 233678899999999998887777777


Q ss_pred             hhhhhccCCCCCchhhH--HHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccc
Q 012075          135 EGAIMTSYPPPNRKGTY--ISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVI  212 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~--~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~  212 (471)
                      ...+..|..|+++|++.  .+......++|..+|+.++..+...    .+|++. +++..+...+..++..++.|+++.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~----~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~  182 (375)
T TIGR00899       108 LFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG----FGFTVM-FLTAALAFVLCGVLVWLFLPSYPRG  182 (375)
T ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh----cccHHH-HHHHHHHHHHHHHHHHHhCCCcccC
Confidence            77778888777777754  5777788889999999887433211    234433 3333333333333333333422111


Q ss_pred             cCCCCccccccCCCHHHHHHHHHHHhcchhHHHHH--HHHHHhH-hHhhhcccccccc--ccccchhhhHHHHHHHHHHH
Q 012075          213 RDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIF--PASWASN-FFYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQML  287 (471)
Q Consensus       213 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~-~~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~  287 (471)
                      +++ +    +++    ++.++   .+++|+.....  ....+.. ..+...++.+...  +.+..+.+..........++
T Consensus       183 ~~~-~----~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  250 (375)
T TIGR00899       183 APG-A----LTR----LEVRG---LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIP  250 (375)
T ss_pred             ccc-c----cCc----chhhh---hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            110 0    001    11111   22334332221  1111111 1111111333221  22333344444444556677


Q ss_pred             HhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHH
Q 012075          288 GSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMF  367 (471)
Q Consensus       288 g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  367 (471)
                      +.++.|++.||  +|||+...++.... .+....    +...                  ++.+......++.+++.+..
T Consensus       251 ~~~~~g~l~~r--~g~~~~~~~~~~~~-~~~~~~----~~~~------------------~~~~~~~~~~~~~g~~~g~~  305 (375)
T TIGR00899       251 FMLLAGYLIKR--FGKRRLMLLAALAG-VAFYTG----LAAD------------------NSLWALLMLQLLNAIFIGIL  305 (375)
T ss_pred             HHHhHHHHHHH--hcchhHHHHHHHHH-HHHHHH----HHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence            78888999999  78888654443221 111111    1000                  11122344455666666666


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          368 QSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       368 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      .+....+..|..++  +++++.++++....+|.+++..+..
T Consensus       306 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~g~~~~g  344 (375)
T TIGR00899       306 AGIGMLYFQDLMPG--RAGAATTLYTNTGRVGWIIAGSVGG  344 (375)
T ss_pred             HHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666677887743  3468889998888888888766554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.74  E-value=8.3e-18  Score=164.62  Aligned_cols=239  Identities=14%  Similarity=0.076  Sum_probs=151.6

Q ss_pred             CCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhh
Q 012075           50 GGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAG  129 (471)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g  129 (471)
                      +...+.++...++...+....+.+.++++|.++||+.||+++.+|..++.+...+.   +.+..+|++.++|.+.|+|.+
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~---~fs~~Fwq~~l~R~~vGiGeA  136 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFAS---GFSNHFWQVLLCRGFVGIGEA  136 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchh
Confidence            33344455545555667777888999999999999999999999999887644332   335789999999999999999


Q ss_pred             HHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHH-HHhccCC
Q 012075          130 LLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALL-SLVILPP  208 (471)
Q Consensus       130 ~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~p  208 (471)
                      ...+.++..++|.+|.++|++.+++|+....+|..+|.+++......   +..|||.... -.++.++..++ .++.++|
T Consensus       137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~---~~~Wr~af~~-~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL---TFWWRWAFRG-SAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC---ccceEEEEEe-ehHHHHHHHHHHHhhccCc
Confidence            99999999999999999999999999999999999999887433222   2236655443 33444444333 4445556


Q ss_pred             CccccCCCCc-ccc-ccCCCHHHHHHHHHHHhcchhHHH----HHHHHHHhHhHhhhcccccccc-----ccccchhhhH
Q 012075          209 GRVIRDDGTH-CTN-IKYSNVSTEITQVLKLFSNWKMLL----IFPASWASNFFYSYQFNNVNGL-----QFNLRTRGLN  277 (471)
Q Consensus       209 ~~~~r~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~~s~~~~~~~~~-----~~~~~~~~l~  277 (471)
                      ++-.+++.+. ... .+..+.+   |+++...+.|...+    .....+-.| .+++..+.+..+     +++.+.....
T Consensus       213 ~rga~~~~~~~~~~~~~~ts~~---kDl~~l~~~~v~v~~sl~~~a~~fv~G-s~sww~p~~~~~~~~~~~~~~~~~~if  288 (493)
T KOG1330|consen  213 ERGARDEVDGENKMVKPFTSVW---KDLKVLAKIKVFVLSSLGIIAAQFVIG-SLSWWAPAFIYYSYELIGFDHNATLIF  288 (493)
T ss_pred             ccccccccccCCcCCCCccchH---HHHHHHHccCceeeehHHHHHHHHhcc-ccchhhhhHHHHHHHHhCCccccchhh
Confidence            5432222111 110 1122333   44433344332211    111111111 122222332221     2333334445


Q ss_pred             HHHHHHHHHHHhhhhhhhcccC
Q 012075          278 NVFYWGAQMLGSVGIGYIFDFS  299 (471)
Q Consensus       278 ~~~~~i~~i~g~~~~g~l~D~~  299 (471)
                      ..+..+++.+|.+.+|.++||.
T Consensus       289 g~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  289 GGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             hhHHHhhchhhheehHHHHHHH
Confidence            5667888899999999999983

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.74  E-value=1.1e-15  Score=174.91  Aligned_cols=327  Identities=14%  Similarity=0.031  Sum_probs=185.6

Q ss_pred             hhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           59 AANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ..++..++..+.+.+.++++|+++||+|||+++......-++..+........++++.++++|+++|++.++.+++..++
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~  132 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSI  132 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence            34555666677788899999999999999997644222111111111111124789999999999999999999999999


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCc
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTH  218 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~  218 (471)
                      +.++.++++|++++|+.++..++|.++||.++..+...    .+|++ .++...+..++..++..++ |+++..+ ++.+
T Consensus       133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~----~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~  205 (1140)
T PRK06814        133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS----GNFVI-LVALLMGIAVLGWLASLFI-PKTGNAA-PDLK  205 (1140)
T ss_pred             hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc----cccHH-HHHHHHHHHHHHHHHHhhC-CCCCCCC-CCCe
Confidence            99999999999999999999999999999998444321    12322 2222222222222222233 3221111 1100


Q ss_pred             cccccCCCHHHHHHHHHHH-hcchhHHHHHHHHHHhHhHh---hhccccccccc--cccchhhhHHHHHHHHHHHHhhhh
Q 012075          219 CTNIKYSNVSTEITQVLKL-FSNWKMLLIFPASWASNFFY---SYQFNNVNGLQ--FNLRTRGLNNVFYWGAQMLGSVGI  292 (471)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~---s~~~~~~~~~~--~~~~~~~l~~~~~~i~~i~g~~~~  292 (471)
                          .+.+..++..+.++. .++|.++......+...+..   ...++.+....  .+....++.....+++.++|.++.
T Consensus       206 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~  281 (1140)
T PRK06814        206 ----IDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLA  281 (1140)
T ss_pred             ----eccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence                111222222233333 34555544443333222111   11113333222  233345667778899999999999


Q ss_pred             hhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCcc----C-CCCCCCCchhHHHHHHHHHhhHHHH
Q 012075          293 GYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKL----D-FKNSGSDFAGPFVLYFCYGLLDAMF  367 (471)
Q Consensus       293 g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~g~~~~~~  367 (471)
                      |++.|+  .++++....+.+++....+.+ .  .........   +...    . +..  .+.+...+..+++|++.+..
T Consensus       282 g~l~~~--~~~~~~~~~~~~~~~~~~~~l-~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~  351 (1140)
T PRK06814        282 SKLSEG--RITLLYVPIGALLMGLFGLDL-A--FASSSVPAE---PAQLKSILVFLSK--RHGWRILIDLFGLAAAGGLY  351 (1140)
T ss_pred             HHHhCC--ceeeeeehHHHHHHHHHHHHH-H--hcccccccc---cccccchhhhhcc--cccHHHHHHHHHHHHHHHHh
Confidence            999987  344444444433332111111 1  000000000   0000    0 000  12223455667778888888


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          368 QSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       368 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ++...+++.+..+ ++.+++++|+.+.+..++.+++-.+.
T Consensus       352 ~~~~~~~~~~~~p-~~~~G~v~g~~~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        352 IVPLFAALQAWAN-PAHRARVIAANNVLNAAFMVAGTIIL  390 (1140)
T ss_pred             HHHHHHHHHhhCC-cccceeeeHHHHHHHHHHHHHHHHHH
Confidence            8888888888773 33558999999998888777766543

>PRK10054 putative transporter; Provisional

Probab=99.72  E-value=2.1e-15  Score=152.58  Aligned_cols=307  Identities=11%  Similarity=0.030  Sum_probs=173.8

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+.......+++++.|.++||+|||++++++.+...+.....   ..+++.+.++++|.+.|.+.+...+..
T Consensus        41 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~  117 (395)
T PRK10054         41 SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI---PLVNNVTLVVLFFALINCAYSVFSTVL  117 (395)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666677778888999999999999999999987665432222   235778888889999998888777778


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      ..+..|..|+++|++..++.....++|..+||.++..+. .    .+|++. +....++..+..++..+..|+++.++++
T Consensus       118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-~----~g~~~~-f~~~~~~~~i~~i~~~~~~~~~~~~~~~  191 (395)
T PRK10054        118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV-M----QSINLP-FWLAAICSAFPLVFIQIWVQRSEKAIAT  191 (395)
T ss_pred             HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hccCcH-HHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            888899999999999999999999999999999874332 2    134443 3333333333333333322321111110


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhh---ccccccc--cccc--cchhhhHHHHHHHHHHHH
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSY---QFNNVNG--LQFN--LRTRGLNNVFYWGAQMLG  288 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~---~~~~~~~--~~~~--~~~~~l~~~~~~i~~i~g  288 (471)
                      +       +++.    .+..+.+++|+++......+...+.++.   ..+.+..  ...+  ....+.......+..+..
T Consensus       192 ~-------~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  260 (395)
T PRK10054        192 E-------TGSV----WSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSL  260 (395)
T ss_pred             c-------hhhh----hhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeee
Confidence            0       0000    1112335566654443332222211110   1111111  1111  112234444445555555


Q ss_pred             hhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHH
Q 012075          289 SVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQ  368 (471)
Q Consensus       289 ~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  368 (471)
                      ....+++.||  .+||+....+.... .+.....    ..    .          .   .+.....+..++++++.....
T Consensus       261 ~~~~g~~~~~--~~~~~~l~~~~~~~-~~~~~~~----~~----~----------~---~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        261 QYSVGRRLNA--ANIRPLMTAGTLCF-VIGLVGF----IF----S----------G---NSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             hhHHHHHHcc--CCchhHHHHHHHHH-HHHHHHH----HH----c----------c---hHHHHHHHHHHHHHHHHHHHH
Confidence            5667888898  67887665554322 1111111    10    0          0   111223344556777777766


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          369 SMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       369 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +.....+.+..++ +.++++++..+ ...+|.+++-....
T Consensus       317 p~~~~~~~~~~p~-~~~~~~~~~~~-~~~~G~~~Gp~~~G  354 (395)
T PRK10054        317 PGEYMLIDHIAPP-GMKASYFSAQS-LGWLGAAINPLVSG  354 (395)
T ss_pred             hhHHHHHHHhCCc-ccceehHhHHH-HHHHHHHHHHHHHH
Confidence            6666677776633 34477776544 33456666655443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.72  E-value=1.1e-14  Score=151.02  Aligned_cols=313  Identities=14%  Similarity=0.091  Sum_probs=187.2

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh--cccchHHHHHHHHHHhhhhhHHHhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN--HHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~--~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      +....+......+-..+.++++|.++||+.||+.++.+-++..+.........  ...+.|.+++.-++.|++.++..++
T Consensus        44 ~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA  123 (524)
T PF05977_consen   44 PLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPA  123 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555667788999999999999999999876544322221111  1347889999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ..+++.|+.|+++..++.++.....++..++||.++..+....    +..+ .+.+-. +..+..+..+...+++.. ++
T Consensus       124 ~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~----G~~~-~f~ina-lsfl~~i~~l~~~~~~~~-~~  196 (524)
T PF05977_consen  124 WQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF----GAAA-AFLINA-LSFLISILALLRWKPPPP-PS  196 (524)
T ss_pred             HHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH----HHHH-HHHHHH-HHHHHHHHHHHHcccccc-cc
Confidence            9999999999999999999999999999999999874333211    1111 222222 222222222222222111 10


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhc-chhHHHHHHHHHHhHhHhh---hccccccccccc--cchhhhHHHHHHHHHHHH
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFS-NWKMLLIFPASWASNFFYS---YQFNNVNGLQFN--LRTRGLNNVFYWGAQMLG  288 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~s---~~~~~~~~~~~~--~~~~~l~~~~~~i~~i~g  288 (471)
                      +      .++++..+++++-++..+ +|.+.......+..+++.+   ..++.+....++  ...-++...+.++|.++|
T Consensus       197 ~------~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~G  270 (524)
T PF05977_consen  197 S------LPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILG  270 (524)
T ss_pred             c------cchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence            0      123345566666666554 3443322221122222111   111222222222  234567778899999999


Q ss_pred             hhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHH
Q 012075          289 SVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQ  368 (471)
Q Consensus       289 ~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  368 (471)
                      +++.+++.+|  .++++....+.+..+ +..+.    +.               ..   ++.+..++..++.|++....+
T Consensus       271 al~~~~l~~~--~~~~~lv~~~~~~~a-~~~~~----la---------------l~---~~~~~~~~~l~l~G~~~~~~~  325 (524)
T PF05977_consen  271 ALLLPRLRRR--LSSRRLVLLASLLFA-LALLL----LA---------------LS---PSFWLALIALFLAGAAWIIAN  325 (524)
T ss_pred             HHHHHHhhcc--cCcchhhHHHHHHHH-HHHHH----Hh---------------cc---hHHHHHHHHHHHHHHHHHHHH
Confidence            9999988776  566654444433221 11111    11               01   223344556667777777777


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          369 SMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       369 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +...+.+.+..+ +..++|++++++.....+.+++..+..
T Consensus       326 ~~~~t~~Q~~~P-~~~~GRv~si~~~~~~g~~~lGsll~G  364 (524)
T PF05977_consen  326 SSLNTLVQLSVP-DWVRGRVFSIYQMVFFGGMPLGSLLWG  364 (524)
T ss_pred             HHHHHHHHHhCC-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666655553 445699999999988888887766543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.72  E-value=9e-16  Score=149.10  Aligned_cols=243  Identities=15%  Similarity=0.124  Sum_probs=159.2

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .+..+.+...+..+..++++.++.|.++||.+.|..+-++.+.-.+..   +....+++.+.+.+.-+++|+..|..|+.
T Consensus        61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n---il~Gfs~s~~~~~~l~~lng~fQg~Gwpp  137 (448)
T COG2271          61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN---ILFGFSPSLFLFAVLWVLNGWFQGMGWPP  137 (448)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHhcCCCcH
Confidence            344555677788899999999999999999999999999987665422   22344678899999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH--HHhhccCCCccccccchhHHHHHHHHHHHHHHHh-ccC-CCc
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP--FILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLV-ILP-PGR  210 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-l~~-p~~  210 (471)
                      ....++.+.++++||+..++++...++|..+.+.+.  ..+..+    .+|+..+ +...++.++..+..++ .++ |+.
T Consensus       138 ~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~----~~w~~~f-~~pgiiaiival~~~~~~rd~Pqs  212 (448)
T COG2271         138 CARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----GGWRAAF-YFPGIIAIIVALILLFLLRDRPQS  212 (448)
T ss_pred             HHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc----cchhHHH-HHHHHHHHHHHHHHHHHhCCCccc
Confidence            999999999999999999999999999998877765  222221    2344443 3444343333333333 332 433


Q ss_pred             c-------ccCCCCcc-ccc-cC--CCHHHHHHHHHHHhcchhHHHHHHHHHHhHhH-hh--hccccccc--cccccchh
Q 012075          211 V-------IRDDGTHC-TNI-KY--SNVSTEITQVLKLFSNWKMLLIFPASWASNFF-YS--YQFNNVNG--LQFNLRTR  274 (471)
Q Consensus       211 ~-------~r~~~~~~-~~~-~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~s--~~~~~~~~--~~~~~~~~  274 (471)
                      .       -|.|+.+. .++ ++  .+.+|.+.+  ..+++|.++++...-.+.-.. |+  ..-+.++.  .+++....
T Consensus       213 ~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~--YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a  290 (448)
T COG2271         213 EGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVK--YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA  290 (448)
T ss_pred             cCCCCHHHhhcCchhhhhhhccCCCccHHHHHHH--HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH
Confidence            2       12222221 111 11  223333322  235777777666543332211 00  00133332  35566566


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhcccCCCCcccee
Q 012075          275 GLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRG  307 (471)
Q Consensus       275 ~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~  307 (471)
                      ......+=++.+.|++++|+++||..-|||...
T Consensus       291 ~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         291 NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            666777889999999999999999644787643

>TIGR00896 CynX cyanate transporter

Probab=99.71  E-value=2e-15  Score=150.42  Aligned_cols=302  Identities=13%  Similarity=0.034  Sum_probs=171.4

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+..+.+..+++++.|+++||+|||+.+.++.++..+.....    .+++.+.+++.|++.|++.+...+.
T Consensus        32 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~g~~~~~~~  107 (355)
T TIGR00896        32 MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR----SAPGTALLFAGTALIGVGIAIINVL  107 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHhcc
Confidence            345556677788888889999999999999999999999987765533222    2578889999999999999998877


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      .+.++.|..| ++|++++++++....+|..+|+.+...+.....  ..|++. +....+...+.   .....|+++. ++
T Consensus       108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~--~~w~~~-f~~~~~~~~~~---~~~~~~~~~~-~~  179 (355)
T TIGR00896       108 LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG--GHWQQA-LAWWALPALLA---LLAWIPQVRR-RV  179 (355)
T ss_pred             chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHH-HHHHHHHHHHH---HHHHhhhhcc-cc
Confidence            8888888864 689999999999999999999887643321110  113322 22222221111   1112221111 11


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hhh--hccccccc-cccccchhhhHHHHHHHHHHHHhh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF-FYS--YQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~s--~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                      ++++ . .++..       ..+.+++|+.+........... .+.  ...+.+.. .+++..+.+......+++.+++++
T Consensus       180 ~~~~-~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~  250 (355)
T TIGR00896       180 AANQ-T-TTRLT-------PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASAL  250 (355)
T ss_pred             CCCC-C-CCCCC-------CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1000 0 00011       1122345554433322222111 111  11133322 234444556667778999999999


Q ss_pred             hhhhhcccCCC-CccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          291 GIGYIFDFSFP-TRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       291 ~~g~l~D~~~~-gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      +.|++.||  + +||+....+...+ .++....    .+.   +        +     ..   .....+++|++.+...+
T Consensus       251 ~~g~l~dr--~~~~~~~~~~~~~~~-~~~~~~~----~~~---~--------~-----~~---~~~~~~l~g~~~g~~~~  304 (355)
T TIGR00896       251 LIPALARR--VKDQRGIVAVLAVLQ-LVGLCGL----LFA---P--------M-----HG---LWAWALVLGLGQGGAFP  304 (355)
T ss_pred             hHHHHHhh--hccchHHHHHHHHHH-HHHHHHH----HHh---h--------h-----hH---HHHHHHHHHHhhhhHhH
Confidence            99999999  5 4554444433322 1111111    100   0        0     11   11134556777777766


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVA  403 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~  403 (471)
                      .....+.+...++++.+...++.+.+..++.+++
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g  338 (355)
T TIGR00896       305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALG  338 (355)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555555555445555666666655544444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.70  E-value=2.8e-15  Score=152.98  Aligned_cols=232  Identities=15%  Similarity=0.199  Sum_probs=152.8

Q ss_pred             hhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           59 AANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ..++..+..+.+..++.+..+++.||+|-|+++..+.++..+...-.-. +...+.+.+++.|+++|++.|..+++...+
T Consensus        74 ~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~-aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i  152 (466)
T KOG2532|consen   74 EKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPL-AASIGFYLLLVLRFLQGLGQGVLFPAIGSI  152 (466)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHH-HHHhcchhhHHHHHHhHHHHhHHHhhhhce
Confidence            3456677778888888899999999999999999999887763332222 123456688999999999999999999999


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhc-c-CCCccccCCC
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVI-L-PPGRVIRDDG  216 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l-~-~p~~~~r~~~  216 (471)
                      .+.++|++||++..++..+..++|.+++-.++..+ ...  ..+|++..|+ +..+.++..++.+++ . .|++.++..+
T Consensus       153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~l-c~s--~~GW~sifY~-~g~~g~i~~~~w~~~~~d~P~~h~~is~  228 (466)
T KOG2532|consen  153 LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLL-CES--SLGWPSIFYV-FGIVGLIWFILWFLFYSDSPSKHPNISE  228 (466)
T ss_pred             eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-hcc--CCCCchHHHH-HHHHHHHHHHHHHHHhcCCcccCCCCCH
Confidence            99999999999999999999999999887665323 221  1456666553 333444333333322 2 2443221111


Q ss_pred             Cccc--------cccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh----Hhhhccccccc--cccccchhhhHHHHHH
Q 012075          217 THCT--------NIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF----FYSYQFNNVNG--LQFNLRTRGLNNVFYW  282 (471)
Q Consensus       217 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~s~~~~~~~~--~~~~~~~~~l~~~~~~  282 (471)
                      +|.+        .+.++...-.+   .+.++++.++.+....+.-.+    ...|. |+|..  .+++.++.++.+..-.
T Consensus       229 ~El~~I~~~k~~~~~~~~~~vP~---~~i~ts~~vwai~~~~f~~~~~~~~l~~y~-PtY~~~VL~f~v~~~G~~salP~  304 (466)
T KOG2532|consen  229 KELKYIEKGKSEAHVKKKPPVPY---KAILTSPPVWAIWISAFGGNWGFYLLLTYL-PTYLKEVLGFDVRETGFLSALPF  304 (466)
T ss_pred             HHHHHHHhcccccccCCCCCCCH---HHHHcCHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHhCCChhhhhHHHHHHH
Confidence            1100        00000000012   234566777665554443332    22333 66654  3677888888888888


Q ss_pred             HHHHHHhhhhhhhcccC
Q 012075          283 GAQMLGSVGIGYIFDFS  299 (471)
Q Consensus       283 i~~i~g~~~~g~l~D~~  299 (471)
                      +...+..+++|.++||.
T Consensus       305 l~~~~~k~~~g~lsD~l  321 (466)
T KOG2532|consen  305 LAMAIVKFVAGQLSDRL  321 (466)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            89999999999999984

>TIGR00901 2A0125 AmpG-related permease

Probab=99.70  E-value=3.9e-15  Score=148.38  Aligned_cols=302  Identities=10%  Similarity=-0.003  Sum_probs=162.6

Q ss_pred             hchhhhhhhcc-----chhHHH-HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCch
Q 012075           75 GILGGGIYNIL-----GPQVTL-ISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRK  148 (471)
Q Consensus        75 ~~~~g~l~d~~-----Grk~~l-~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~R  148 (471)
                      .+++|+++||+     |||+.+ +.+.+...+............+.+.+...+++.|++.+...++..+++.|+.|+|+|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            78999999998     899985 455554444322222211124566778888888988888888889999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHHHhhccCCCc----cccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccC
Q 012075          149 GTYISIFWSIFNMGGVIGGLIPFILNYNRNEA----VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKY  224 (471)
Q Consensus       149 G~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~  224 (471)
                      +++.++......+|.++|+.+...+....+.+    .+|+.. +++..+...+..+..++..|+ +.+++++++   +++
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~-f~i~ai~~l~~~~~~~~~~~e-~~~~~~~~~---~~~  192 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI-FFWTALLILPGLLVTLFLAKE-PQEDASVPK---PLT  192 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH-HHHHHHHHHHHHHHHHHhccC-CCcccccch---hHH
Confidence            99999999999999999998874333221100    013222 233332323222222333332 111110000   001


Q ss_pred             CCHHHHHHHHHHHhcchhHHHHHHHHHHhHh----Hhhhccccccc-cccccchhhhHHHHHH-HHHHHHhhhhhhhccc
Q 012075          225 SNVSTEITQVLKLFSNWKMLLIFPASWASNF----FYSYQFNNVNG-LQFNLRTRGLNNVFYW-GAQMLGSVGIGYIFDF  298 (471)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~s~~~~~~~~-~~~~~~~~~l~~~~~~-i~~i~g~~~~g~l~D~  298 (471)
                      ++.++.+++.++....++.+.+....+....    .++.. +.+.. .+++..+.+......+ ++.+++.++.+++.||
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r  271 (356)
T TIGR00901       193 QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT-TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQP  271 (356)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            1122233333222111124333222222111    11111 23322 2334434454444444 5678899999999999


Q ss_pred             CCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 012075          299 SFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGAL  378 (471)
Q Consensus       299 ~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  378 (471)
                        +|||+....+.++.. +....+.  + .... .+   .  .+...  +.......+.++.+++.+..++....++.|.
T Consensus       272 --~g~~~~l~~~~~~~~-~~~~~~~--~-~~~~-~~---~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  337 (356)
T TIGR00901       272 --LNILYALLLFGIVQA-LTNAGFV--W-LASN-GH---H--DGITF--PHLLMLFLTITLEAVTGGLGTVAFVAFLSKL  337 (356)
T ss_pred             --hhHHHHHHHHHHHHH-HHHHHHH--H-HHhc-Cc---c--ccccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence              888887655544332 1111111  0 0000 00   0  00000  1223345556677888888888888899999


Q ss_pred             cCCchhhhHHHHHHHHHHH
Q 012075          379 ADDSETLSRYSGFYKGVQS  397 (471)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~s  397 (471)
                      ++ ++++++.+|+++..++
T Consensus       338 ~p-~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       338 SN-PKFGATQMALLSSLSA  355 (356)
T ss_pred             cC-CCccHHHHHHHHHHHh
Confidence            84 3455888888776543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=2.4e-17  Score=160.76  Aligned_cols=115  Identities=15%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             hhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccc----hHHHHHHHHHHhhhhhHHHh
Q 012075           58 TAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKH----QAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        58 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~----~~~li~~r~l~G~g~g~~~~  133 (471)
                      .......++.+.+-.+|+++.|++.|++|||+++....++.++.++++......++    .+.+.+.|++.|+|.|.-.+
T Consensus        84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP  163 (538)
T KOG0252|consen   84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP  163 (538)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence            34455666777888889999999999999999999999988775543222111111    35788999999999999999


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHH
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFI  172 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~  172 (471)
                      ...++.+|.+.+++||...+...++...|.+.|.+++..
T Consensus       164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I  202 (538)
T KOG0252|consen  164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI  202 (538)
T ss_pred             chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence            999999999999999999999999999998888887643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.69  E-value=2.2e-14  Score=145.73  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=100.2

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+..+.+..++++..|++.||+|||++++++.+++.+........+..++++.+++.|++.|+|.|...++
T Consensus        35 ~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~  114 (410)
T TIGR00885        35 LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETA  114 (410)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhh
Confidence            44556667778888889999999999999999999999999887764433322222467899999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ...++.+..|+++|++.+++.+...++|..+|+.+...+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885       115 ANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             hhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999987443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=99.69  E-value=1.5e-16  Score=137.33  Aligned_cols=116  Identities=33%  Similarity=0.613  Sum_probs=108.9

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .+++.+..++++.|..+++++++.|++.+++|.|+++++|.+.|.+|.+++++    ++.+.++.+.++.|+|.+..|++
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----~~~~~l~~~s~l~G~~~a~lW~a  109 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----PNSYTLYPASALLGFGAALLWTA  109 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhhHHhhHh
Confidence            45678899999999999999999999999999999999999999999988776    67899999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhh
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILN  174 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~  174 (471)
                      ++.|+.+++++++|+|..+++|...+.+.++|+++.+...
T Consensus       110 qg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  110 QGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999986653

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.67  E-value=3.6e-14  Score=141.83  Aligned_cols=147  Identities=14%  Similarity=0.068  Sum_probs=115.3

Q ss_pred             CChhh-hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTA-ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      .++.. .+...+..+.++++..+..|.++||+|.|+++.++.+.+.+..+....   +++.+.+.+.|++.|++.|..+ 
T Consensus        58 lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f---a~Sl~~L~i~R~llGvaEA~~~-  133 (511)
T TIGR00806        58 FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL---GTSVWHMQLMEVFYSVTMAARI-  133 (511)
T ss_pred             CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-
Confidence            34444 677788889999999999999999999999999999988875544433   5679999999999999999999 


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchh--HHHHHHHHHHHHHHHhccCCCc
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTY--IGFMCFMSAGALLSLVILPPGR  210 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~p~~  210 (471)
                      +...|+..+.|+++|++++|++.+...+|.++++.++..+. .    .+|++-..  .+-....++++++++++.+|++
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s----~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T----LGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----cCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            99999999999999999999999999999999998874432 1    12332211  2333455566667777754443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=4.2e-15  Score=142.81  Aligned_cols=218  Identities=15%  Similarity=0.172  Sum_probs=155.1

Q ss_pred             hHHHHHHHHHHHhh----hchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           61 NNANTALYTTFTIF----GILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        61 ~~~~~~~~~~~~i~----~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +...++++...++.    +++.|++.||+|+|..+++|..+....++.   .++..++++++++|.++|+|.+..+++..
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTil---Fafg~sy~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTIL---FAFGNSYPMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHH---HHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence            45566777666655    578999999999999999999876543322   24468899999999999999999999999


Q ss_pred             hhhccCCCCC-chhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCC
Q 012075          137 AIMTSYPPPN-RKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDD  215 (471)
Q Consensus       137 ~~i~~~~~~~-~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~  215 (471)
                      +.+++..|++ +||+++|+...+..+|.++||.++ ++.++.   .+ -...|+++.++.++-..+.++..+|++.+.++
T Consensus       182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfG-GilYe~---~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~  256 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFG-GILYEF---AG-KSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS  256 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHhccceecCCcc-cchHhh---cC-CcCcHHHHHHHHHHHHHHHHheeCccccCccc
Confidence            9999988755 689999999999999999999998 444542   11 23456666666666666777777775432211


Q ss_pred             CCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhcccccc---ccccc--cchhhhHHHHHHHHHHHHhh
Q 012075          216 GTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVN---GLQFN--LRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~~~~~~---~~~~~--~~~~~l~~~~~~i~~i~g~~  290 (471)
                      .     ++.       +..++.+++|.+++.......++...++.-+++-   ...+.  ..+.++..+...+...+++.
T Consensus       257 ~-----~~~-------~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~  324 (464)
T KOG3764|consen  257 T-----EQG-------TPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTN  324 (464)
T ss_pred             c-----ccC-------ccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCc
Confidence            0     111       2355667888887766555555554444433321   11111  12566777778888999999


Q ss_pred             hhhhhccc
Q 012075          291 GIGYIFDF  298 (471)
Q Consensus       291 ~~g~l~D~  298 (471)
                      +.|.+.||
T Consensus       325 lfg~la~k  332 (464)
T KOG3764|consen  325 LFGKLADK  332 (464)
T ss_pred             hHHHHHHh
Confidence            99999998

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.66  E-value=1.6e-14  Score=147.47  Aligned_cols=318  Identities=15%  Similarity=0.050  Sum_probs=153.5

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQA-FAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~-~li~~r~l~G~g~g~~~~  133 (471)
                      .++...+...+.......++++++|+++||+|||+.++++..+..+..........++... ....+.++.++..+..+.
T Consensus        43 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (420)
T PRK09528         43 LSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFL  122 (420)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3455667778888888899999999999999999999887665443222111101011000 111222333333332222


Q ss_pred             hhhhhhccCCC--CCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc
Q 012075          134 AEGAIMTSYPP--PNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV  211 (471)
Q Consensus       134 ~~~~~i~~~~~--~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~  211 (471)
                      .....+.++.+  +++||+.+|......++|..+|+.+...+. ..    +|++ .++...++.++..++.++.++|++.
T Consensus       123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~-~~----~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~  196 (420)
T PRK09528        123 AGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILF-NI----NPQI-NFWLGSGSALILLVLLFFAKPDAPS  196 (420)
T ss_pred             cchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHH-hc----CchH-hHHHHHHHHHHHHHHHhcccccccc
Confidence            21112222222  356777888888888899999998864332 21    2333 2333333333333333344433221


Q ss_pred             ccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHh---hhcccccccc-----ccccchhhhHHHHHHH
Q 012075          212 IRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFY---SYQFNNVNGL-----QFNLRTRGLNNVFYWG  283 (471)
Q Consensus       212 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---s~~~~~~~~~-----~~~~~~~~l~~~~~~i  283 (471)
                      +++++++...+++   +.+.++..+.+++|+++.+..........+   ...++.+...     ..+....+.......+
T Consensus       197 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  273 (420)
T PRK09528        197 TAKVANALGANAS---AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVF  273 (420)
T ss_pred             hhhhccchhcccc---cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence            1100000000011   112233444556665433222211111111   1111222111     1222233455555677


Q ss_pred             HHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhh
Q 012075          284 AQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLL  363 (471)
Q Consensus       284 ~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  363 (471)
                      +..++.++.|++.||  +|||+....+.... .+....    +.    +.              .+.....+..++.+..
T Consensus       274 ~~~~~~~~~g~l~dr--~g~~~~~~~~~~l~-~~~~~l----~~----~~--------------~~~~~~~~~~~l~g~~  328 (420)
T PRK09528        274 LEALIMFFAPFIINR--IGAKNALLLAGTIM-AVRIIG----SG----FA--------------TGPLEVSILKLLHAFE  328 (420)
T ss_pred             HHHHHHHHHHHHHHH--hCcchhhHHHHHHH-HHHHHH----HH----hc--------------ccHHHHHHHHHHHHHH
Confidence            888999999999999  88988655443322 111111    11    01              1112234445566666


Q ss_pred             HHHHHHHHHHHHHHhcCCchhhhHHHHH-HHHHHHHHHHHHhhhc
Q 012075          364 DAMFQSMVYWVIGALADDSETLSRYSGF-YKGVQSAGAAVAWQVD  407 (471)
Q Consensus       364 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~s~g~~i~~~~~  407 (471)
                      .+...+....++.+.++ ++.+++..+. +++...+|.+++..+.
T Consensus       329 ~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~~~  372 (420)
T PRK09528        329 VPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLSTLA  372 (420)
T ss_pred             HHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHHHH
Confidence            66655555566777773 3333444433 4554556666655543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.66  E-value=4e-14  Score=144.29  Aligned_cols=342  Identities=12%  Similarity=0.051  Sum_probs=183.6

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccch-hHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGP-QVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-k~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      .++...++..+....+..++++++|.++||+|| |+.+.++.++..+....  . ...++.+.+++.|++.|++.+...+
T Consensus        35 ~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~~  111 (418)
T TIGR00889        35 FSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF--A-AQVTTPAGMFPVLLANSLAYMPTIA  111 (418)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH--H-HHhcCHHHHHHHHHHHHHHHccHHH
Confidence            345566777888888889999999999999965 77888777665442222  1 2357788899999999998766544


Q ss_pred             hhhhh----hc----cCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhc
Q 012075          134 AEGAI----MT----SYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVI  205 (471)
Q Consensus       134 ~~~~~----i~----~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  205 (471)
                      ...+.    ..    |+.....|.|..|.      +|..+|+++...+..      ...|..+.+..++..+..++.++ 
T Consensus       112 ~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~------~~~~~~f~~~~~~~~~~~~~~~~-  178 (418)
T TIGR00889       112 LTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDI------ELSNIQLYITAGSSALLGVFALT-  178 (418)
T ss_pred             HHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHHHhc-
Confidence            33322    22    34444567777773      466777776532211      11122233333333333333223 


Q ss_pred             cCCCccccCCCCccccccCCCHHHHH-HHHHHHhcchhHHHHHHHHHHhHh----Hhhhccccccc-ccc--------cc
Q 012075          206 LPPGRVIRDDGTHCTNIKYSNVSTEI-TQVLKLFSNWKMLLIFPASWASNF----FYSYQFNNVNG-LQF--------NL  271 (471)
Q Consensus       206 ~~p~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~----~~s~~~~~~~~-~~~--------~~  271 (471)
                      .|+++ ++++++      +.+.++.. .+..+.+++|+++.+....+..+.    .+.+. +.+.. .+.        ..
T Consensus       179 ~~e~~-~~~~~~------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~  250 (418)
T TIGR00889       179 LPDIP-VAKSTA------KMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFG-NGFLHEFGRNPEFADSFVV  250 (418)
T ss_pred             CCCCC-CCcccc------ccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhH-HHHHHHhcccccccchhhh
Confidence            33221 111110      11111111 111234566665433333222211    11111 22211 111        12


Q ss_pred             chhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCch
Q 012075          272 RTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFA  351 (471)
Q Consensus       272 ~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (471)
                      ...+.......+..+++.+..+++.||  +|||+....+.+... +......        +.+.      .+    ..+.
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr--~g~r~~l~~~~~~~~-v~~~l~~--------~~~~------~~----~~~~  309 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKR--FGIKKVMLLSLVAWA-LRFGFFA--------YGDP------EY----FGYA  309 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHH-HHHHHHH--------HcCc------ch----hhHH
Confidence            334566666788888899999999999  799997766654331 1111111        0000      00    1122


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHH-HHHHHHHHHHhhhcccCchhhH-----HHHHHHHHHH
Q 012075          352 GPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYK-GVQSAGAAVAWQVDTHKVSLLS-----QLVVNWSLTT  425 (471)
Q Consensus       352 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~s~g~~i~~~~~~~~~p~~~-----~~~~~~~~~~  425 (471)
                      ..++..++.+++.+...+....++.+.++ +++++++.|+.+ ...++|.+++..+.........     .....|.+.+
T Consensus       310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       310 LLFLSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            33455666777777777776777888884 456699999997 4567888887776643322111     0112333343


Q ss_pred             hhhhhhhheeeeeeccC
Q 012075          426 ISYPLLVILVLLAVKDE  442 (471)
Q Consensus       426 ~~~~~~i~~~~~~~pet  442 (471)
                      +..+...+..++++||+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            33334445566777877

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.65  E-value=1.2e-13  Score=139.78  Aligned_cols=304  Identities=14%  Similarity=0.079  Sum_probs=148.3

Q ss_pred             hhhhhHHHHHH-HHHHHhhhchhhhhhhccchhHHHHHHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           57 TTAANNANTAL-YTTFTIFGILGGGIYNILGPQVTLISAC-STYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        57 ~~~~~~~~~~~-~~~~~i~~~~~g~l~d~~Grk~~l~i~~-~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      +...+...+.. .....++++.+++ .||+|||+.+++.. +...+  +... .+.+++.+.+++.+.+.|...+...+.
T Consensus        50 ~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (393)
T PRK15011         50 PAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL--ACTL-FAWNRNYFVLLFVGVFLSSFGSTANPQ  125 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH--HHHH-HHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            44334443333 3344455666666 99999998765544 33222  1111 133577887665555444444455666


Q ss_pred             hhhhhccCCCCCch--hhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccc
Q 012075          135 EGAIMTSYPPPNRK--GTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVI  212 (471)
Q Consensus       135 ~~~~i~~~~~~~~R--G~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~  212 (471)
                      ...+..|..++++|  +...++.....++|.++||.++..+...    .+|+. .|+...++.++..+...+..|+++.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~----~gw~~-~f~~~~~~~~~~~~~~~~~~~~~~~~  200 (393)
T PRK15011        126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG----FSFTV-MYLSAAVAFIVCGVMVWLFLPSMRKE  200 (393)
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh----cChHH-HHHHHHHHHHHHHHHHHhhcCccCCC
Confidence            77777776665555  4556788888899999999997444322    13443 23333333333333333333432211


Q ss_pred             cCCCCccccccCCCHHHHHHHHHHHhcchhHHHH--HHHHHHhHh-Hhhhcccccccc--ccccchhhhHHHHHHHHHHH
Q 012075          213 RDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLI--FPASWASNF-FYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQML  287 (471)
Q Consensus       213 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~-~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~  287 (471)
                      ++++++    +.+    ..+   +  .++..+..  .....+... .+....+.+...  +++....++......++.++
T Consensus       201 ~~~~~~----~~~----~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~  267 (393)
T PRK15011        201 LPLATG----TLE----APR---R--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIP  267 (393)
T ss_pred             Cccccc----ccc----ccc---c--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            111000    000    001   0  11111111  111111111 111112333322  22333445544455667788


Q ss_pred             HhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHH
Q 012075          288 GSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMF  367 (471)
Q Consensus       288 g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  367 (471)
                      +.++.|++.||  +|||+....+.... .+.   .. ....    .        +      +.....+..++.++..+..
T Consensus       268 ~~~~~G~l~dr--~g~~~~~~~~~~~~-~~~---~~-~~~~----~--------~------~~~~~l~~~~l~~~~~g~~  322 (393)
T PRK15011        268 TMLIAGYFAKR--LGKRFLMRVAAVAG-VCF---YA-GMLM----A--------H------SPAILLGLQLLNAIYIGIL  322 (393)
T ss_pred             HHHHHHHHHHH--hChHHHHHHHHHHH-HHH---HH-HHHH----H--------h------hHHHHHHHHHHHHHHHHHH
Confidence            88999999999  78887554433222 111   11 0100    0        0      1111122222233333333


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          368 QSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       368 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      .+....+..|++++  +++++.++++...++|.+++-.+...
T Consensus       323 ~~~~~~~~~~~~p~--~~g~~~~~~~~~~~lg~~~g~~l~G~  362 (393)
T PRK15011        323 GGIGMLYFQDLMPG--QAGSATTLYTNTSRVGWIIAGSLAGI  362 (393)
T ss_pred             HHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344556777743  35788898888888888888776653

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.65  E-value=2.1e-14  Score=137.31  Aligned_cols=110  Identities=19%  Similarity=0.121  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      ++..-+.+...-.+.+..+|.++|++|||+++.++.+.-.++....   +.+.|...++.+|++.|+..|-..+ .-+|+
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~---~~S~~F~afv~aR~l~Gi~kgnl~v-~rAii  145 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW---ALSRNFAAFVLARFLGGIFKGNLSV-IRAII  145 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhccCchHH-HHHHH
Confidence            3444445556677788999999999999999999998766543322   3367787778889999999997654 57899


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      +|+.++|+|++.++.....+.+|.++||.|+..+
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl  179 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL  179 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence            9999999999999999999999999999998433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.65  E-value=3.6e-15  Score=158.94  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=92.6

Q ss_pred             hhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhc----------------------------
Q 012075           59 AANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNH----------------------------  110 (471)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~----------------------------  110 (471)
                      ..+...+....+.+++.++.+++.||+|||+.+.++.+++.+....+....+                            
T Consensus        69 ~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~  148 (633)
T TIGR00805        69 SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMEN  148 (633)
T ss_pred             cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCC
Confidence            3344556677778888999999999999999999999887764433222100                            


Q ss_pred             --------------------ccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          111 --------------------HKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       111 --------------------~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                                          ...+..++++|+++|+|.+..++...+|++|+.|+++|++++++++....+|+.+|++++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llg  228 (633)
T TIGR00805       149 LTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLG  228 (633)
T ss_pred             CCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHH
Confidence                                001346789999999999999999999999999999999999999999999999999987


Q ss_pred             HHh
Q 012075          171 FIL  173 (471)
Q Consensus       171 ~~~  173 (471)
                      ..+
T Consensus       229 g~l  231 (633)
T TIGR00805       229 SFC  231 (633)
T ss_pred             HHH
Confidence            433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.63  E-value=6.3e-14  Score=143.57  Aligned_cols=320  Identities=12%  Similarity=0.031  Sum_probs=175.1

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhc----cchhH-HHHHHHHHHHHHHHHHHhhh-cc--cchHHHHHHHHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNI----LGPQV-TLISACSTYVLYAGSFLYYN-HH--KHQAFAIAAGAILGIG  127 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grk~-~l~i~~~~~~~~~~~~~~~~-~~--~~~~~li~~r~l~G~g  127 (471)
                      ++...+...++.....++..++.|+++||    +|||+ .++++.+.+.+......... ..  .....+++.+++.+++
T Consensus        33 s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (437)
T TIGR00792        33 SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLF  112 (437)
T ss_pred             CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence            45555666667777788899999999997    78744 56666666554333222210 00  1135667788898988


Q ss_pred             hhHHHhhhhhhhccCC-CCCchhhHHHHHHHHHHhhhhhhhHHHHHhhc-cC--CCccccccchhHHHHHHHHHHHHHHH
Q 012075          128 AGLLWAAEGAIMTSYP-PPNRKGTYISIFWSIFNMGGVIGGLIPFILNY-NR--NEAVSVNDGTYIGFMCFMSAGALLSL  203 (471)
Q Consensus       128 ~g~~~~~~~~~i~~~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~~~  203 (471)
                      .+...+...++..|.. ++++|++..++.+....+|..+++.+...+.. ..  .+..+|++. +.+..++..+..++..
T Consensus       113 ~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~-~~i~~~l~~~~~~~~~  191 (437)
T TIGR00792       113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMF-ALVLALIGVVSLIICF  191 (437)
T ss_pred             HHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHH-HHHHHHHHHHHHHHHH
Confidence            8887666677778876 57899999999888888887776655322211 11  001122221 2222222222222222


Q ss_pred             hccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhh---hccccccccccc-cchhhhHHH
Q 012075          204 VILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYS---YQFNNVNGLQFN-LRTRGLNNV  279 (471)
Q Consensus       204 ~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s---~~~~~~~~~~~~-~~~~~l~~~  279 (471)
                      +..|+++.+++++    ++++.+.++.+++   .+++|+++......+.....+.   ...+.+..+.++ ....+....
T Consensus       192 ~~~~e~~~~~~~~----~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (437)
T TIGR00792       192 FGTKERYSEIPKN----IEKKLSLKQIFKA---LFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGS  264 (437)
T ss_pred             cCCEecCCCCCcc----cccCCCHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHH
Confidence            2223221100110    0112234443332   3455655444333222222111   111112222222 222344445


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHH
Q 012075          280 FYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFC  359 (471)
Q Consensus       280 ~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (471)
                      ...++.+++.++.+++.||  +|||+....+..++. +.....    . .   .        +     .+.....+..++
T Consensus       265 ~~~i~~ii~~~~~~~l~~r--~g~~~~~~~~~~~~~-~~~~~~----~-~---~--------~-----~~~~~~~~~~~~  320 (437)
T TIGR00792       265 IAIVAGLIGVLLFPRLVKK--FGRKILFAGGILLMV-LGYLIF----F-F---A--------G-----SNLPLILVLIIL  320 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHH-HHHHHH----H-H---c--------c-----hhHHHHHHHHHH
Confidence            5688899999999999999  789887766644331 111111    1 0   0        0     011223445556


Q ss_pred             HHhhHHHHHHHHHHHHHHhcC------CchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          360 YGLLDAMFQSMVYWVIGALAD------DSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       360 ~g~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      .+++.+..++..+.++++..+      +.|+.+.++|++++.+.++.+++-.+.
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       321 AGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777776641      245568889999999888888776544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.62  E-value=5.7e-14  Score=136.80  Aligned_cols=306  Identities=13%  Similarity=0.086  Sum_probs=169.6

Q ss_pred             CCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhH
Q 012075           51 GGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGL  130 (471)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~  130 (471)
                      .+...++.+..+..++-.+..++..+.-|++.||+|.|+...++.++..+=..........+++|++++.+++.|++.+.
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas  121 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS  121 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccce
Confidence            33344556666667777777788889999999999999999999887554222222211235567999999999999997


Q ss_pred             HHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCc
Q 012075          131 LWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGR  210 (471)
Q Consensus       131 ~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~  210 (471)
                      ..+ ...+++++.|||++|.++|++. .-|+|..+...+.-.+..... .+.|+. ...+.....++..+...+.....+
T Consensus       122 Fav-~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-~~~w~~-~~~i~~~~l~v~~v~~~~~~~d~p  197 (417)
T COG2223         122 FAV-GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-FLAWRN-VAGIYVVALAIAAVLAWLGMNDVP  197 (417)
T ss_pred             ehc-ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-hHHHHH-HHHHHHHHHHHHHHHHHHHhCCCh
Confidence            654 5667889999999999999998 666665444433211111000 001222 223333344444444444333111


Q ss_pred             cccCCCCccccccCCCHH-HHHHHHHHHhcchhHHHHHHHHHHh--H-hHhhhcccccccccccc--chhhhHHHHHHHH
Q 012075          211 VIRDDGTHCTNIKYSNVS-TEITQVLKLFSNWKMLLIFPASWAS--N-FFYSYQFNNVNGLQFNL--RTRGLNNVFYWGA  284 (471)
Q Consensus       211 ~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~--~-~~~s~~~~~~~~~~~~~--~~~~l~~~~~~i~  284 (471)
                      ..|.+        .++.+ .+++   ...++|+.+.+....+.+  + .-++..++.+...+|+.  .+.+.........
T Consensus       198 ~~r~~--------~~~~~~~~~~---~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~  266 (417)
T COG2223         198 EHRAS--------VKPQLPAQLK---AVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLI  266 (417)
T ss_pred             hhhcc--------ccccchhHHH---HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence            11111        11111 2222   234566666655443322  1 12333335554434433  3445555566677


Q ss_pred             HHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhH
Q 012075          285 QMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLD  364 (471)
Q Consensus       285 ~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  364 (471)
                      ..+..+++|+++||  +|.++..+....++.++..+..   +      ..+      ..... +........++..+++.
T Consensus       267 g~l~Rp~GG~LsDR--~Gg~rv~~~~f~~~~~~~~~l~---~------~~~------~~~~~-~~~~~~~~~~l~l~~~~  328 (417)
T COG2223         267 GALARPLGGWLSDR--IGGRRVTLAVFVGMALAAALLS---L------FLT------GFGHG-GSFVVFVAVFLALFVFA  328 (417)
T ss_pred             HHHHHhccchhhhh--ccchhHHHHHHHHHHHHHHHHH---c------ccc------ccccC-cchHHHHHHHHHHHHHh
Confidence            77888999999999  6666666555554432222211   1      100      00000 22222344455555666


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhHHHHH
Q 012075          365 AMFQSMVYWVIGALADDSETLSRYSGF  391 (471)
Q Consensus       365 ~~~~~~~~~~i~~~~~~~~~~~~~~~~  391 (471)
                      +..+..++-.++.+++  ++.+...|+
T Consensus       329 G~GnGsvfk~Ip~if~--~~~G~v~G~  353 (417)
T COG2223         329 GLGNGSVFKMIPVIFP--KETGAVTGI  353 (417)
T ss_pred             ccCcchheeechHHHH--hhhhHHHHH
Confidence            6666677888888883  233444443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=99.61  E-value=2.1e-15  Score=140.78  Aligned_cols=331  Identities=18%  Similarity=0.257  Sum_probs=212.7

Q ss_pred             CCcccccccccccccccccchhHHHHHHHHHHhhhhhhhHhhhhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhc
Q 012075            5 GESAGKQQMVVGKSRFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNI   84 (471)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~   84 (471)
                      ++||++++.+.+++.    ....|+.+++..+++.+.+|..+++++.+-+.  +++..+++.+|.....++++.+.+.++
T Consensus        11 ~~s~~~~~~~~r~~~----~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~~~Ir~   84 (390)
T KOG3097|consen   11 NESEEEERRYRRKRL----GILKNVLILSIAFLLTFTAYLGLQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMPLLIRF   84 (390)
T ss_pred             CCCCcccchhccccc----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcccchhhhhhHHHHHHHHHHHHHHHH
Confidence            345555544443322    33446888999988888889999999876332  456677888899889999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC--CCch---------hhHHH
Q 012075           85 LGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP--PNRK---------GTYIS  153 (471)
Q Consensus        85 ~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~--~~~R---------G~~~g  153 (471)
                      +|.|++++++...|.+|++....    +.+..++.+....|+|.+..|.+.++|++++.+  .++|         .+..|
T Consensus        85 ~g~K~tm~lav~~Y~lyiA~Nl~----pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg  160 (390)
T KOG3097|consen   85 LGTKWTMVLAVFPYALYIAANLE----PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFG  160 (390)
T ss_pred             HhhHHHHHHHHHHHHHHHHhhcc----hhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehh
Confidence            99999999999999998876654    678899999999999999999999999998875  3456         58889


Q ss_pred             HHHHHHHhhhhhhhHHHHHh---hccC---C--C----c-------------cc-cccchh------HHHHHHHHHHHHH
Q 012075          154 IFWSIFNMGGVIGGLIPFIL---NYNR---N--E----A-------------VS-VNDGTY------IGFMCFMSAGALL  201 (471)
Q Consensus       154 ~~~~~~~~G~~iG~~i~~~~---~~~~---~--~----~-------------~~-~~~~~~------~~~~~~~~~~~i~  201 (471)
                      .|+.+++....+|+.++..+   ..+.   +  +    .             +. .+...+      .++.....+..++
T Consensus       161 ~Ffii~~~~qv~gn~issli~~~~~~~~~~~sn~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~~  240 (390)
T KOG3097|consen  161 EFFIIFQCAQVWGNLISSLIMTLFLHGALSGSNLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVLI  240 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceeeeecccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHHH
Confidence            99999999999987775321   1111   0  0    0             00 000000      1111111222222


Q ss_pred             HHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhccccc----cccccccchhhhH
Q 012075          202 SLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNV----NGLQFNLRTRGLN  277 (471)
Q Consensus       202 ~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~~~~~----~~~~~~~~~~~l~  277 (471)
                      +.++..+  ..|..++.   -+..+..+.+.-.++.++++|+.+++|+..+.++-..+.-..+    .....+....+..
T Consensus       241 ~~~~~~~--l~r~~~~r---~~~~~~l~i~~l~~~~l~~~r~~llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~igf~  315 (390)
T KOG3097|consen  241 MLFFLGA--LKRYGEKR---LASVSGLNIFQLTFKHLRDIRLRLLVPLTIFSGLEQAFLCADFTKAYVACALGVSRIGFA  315 (390)
T ss_pred             HHHHHHH--Hhhhhhhh---hhcccccchHHHHHHHhcCcceeeeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Confidence            2222211  00100000   0111222334556778899999999999998886444331111    1122344556788


Q ss_pred             HHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHH
Q 012075          278 NVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLY  357 (471)
Q Consensus       278 ~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (471)
                      +.+++++..+.+.+.|.+..+  +||-+....+.+++..+....    +    .++.+  |      +  +++ ...+..
T Consensus       316 m~cfgv~~Av~S~~~g~L~~~--~gr~~~~v~gavv~l~li~~~----~----~w~~~--~------~--~~~-i~y~~a  374 (390)
T KOG3097|consen  316 MACFGVGDAVASSLFGLLGKW--IGRPPLLVLGAVVHLLLITIL----F----FWAPN--P------Q--DSW-IFYVAA  374 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHHHH----H----hcccC--C------C--Cce-EEEeeh
Confidence            899999988888888999987  899988877777663222111    1    12211  0      1  122 234556


Q ss_pred             HHHHhhHHHHHHHH
Q 012075          358 FCYGLLDAMFQSMV  371 (471)
Q Consensus       358 ~~~g~~~~~~~~~~  371 (471)
                      .+||.+|+.|++++
T Consensus       375 alwgv~d~vw~t~i  388 (390)
T KOG3097|consen  375 ALWGVGDAVWKTQI  388 (390)
T ss_pred             hhcCccHHHHHhhc
Confidence            67999999999875

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.60  E-value=6.3e-13  Score=134.53  Aligned_cols=315  Identities=12%  Similarity=0.003  Sum_probs=162.7

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcc-----cchHHHHHHHHHHhhhhhH
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHH-----KHQAFAIAAGAILGIGAGL  130 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~-----~~~~~li~~r~l~G~g~g~  130 (471)
                      ++...+...+.......+++++.|+++||+|||+.++.+.+.+.+...........     .....+++.|++.|++.+.
T Consensus        36 s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  115 (396)
T TIGR00882        36 SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSA  115 (396)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45555667777888888999999999999999999998876554322221111111     1233456778888988888


Q ss_pred             HHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCc
Q 012075          131 LWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGR  210 (471)
Q Consensus       131 ~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~  210 (471)
                      ..+....+..|..  +++++..|......++|..+|+.++. ....    .+|+.. ++....+..+..++.++..|+.+
T Consensus       116 ~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g-~l~~----~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~  187 (396)
T TIGR00882       116 GAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG-ILFS----IDPQIV-FWLGSGFALILMLLLMFAKPKAP  187 (396)
T ss_pred             chhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh-hhhc----cCchHH-HHHHHHHHHHHHHHHHHhCCCCc
Confidence            7777777776653  33455667777777889999998863 3322    123332 33333333333333333333221


Q ss_pred             cccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhH---hhhcccccccc-----ccccchhhhHHHHHH
Q 012075          211 VIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFF---YSYQFNNVNGL-----QFNLRTRGLNNVFYW  282 (471)
Q Consensus       211 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~s~~~~~~~~~-----~~~~~~~~l~~~~~~  282 (471)
                      .+++++++.+.++++   ++.++..+.+++|+++......+.....   ....++.+...     +.+....+.......
T Consensus       188 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~  264 (396)
T TIGR00882       188 SSATVANALGANASA---FSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGE  264 (396)
T ss_pred             hhhhhhcccccccCC---CCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            111000000000011   1123344456666654433332221111   11111222211     112223344555567


Q ss_pred             HHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHh
Q 012075          283 GAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGL  362 (471)
Q Consensus       283 i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  362 (471)
                      +...++....+++.||  +|||+...++..++. +....    +..    .              .+........++.++
T Consensus       265 i~~~~~~~~~g~l~~r--~g~~~~l~~~~~l~~-l~~~~----~~~----~--------------~~~~~~~~~~~l~g~  319 (396)
T TIGR00882       265 LLNALIMFCAPLIINR--IGAKNALLIAGTIMS-VRIIG----SSF----A--------------TTALEVVILKMLHAF  319 (396)
T ss_pred             HHHHHHHHHHHHHHHH--hccchhHHHHHHHHH-HHHHH----HHh----c--------------CChHHHHHHHHHHHH
Confidence            7788888888999999  889987655544331 11111    110    0              111123444555666


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHH-HHHHHHHHHHHHhhhc
Q 012075          363 LDAMFQSMVYWVIGALADDSETLSRYSGF-YKGVQSAGAAVAWQVD  407 (471)
Q Consensus       363 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~s~g~~i~~~~~  407 (471)
                      +....+.....+..+..+ .|..+++.+. +++...+|..+...+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~-~~~~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       320 EVPFLLVGCFKYITSQFD-VRLSATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             HHHHHHHHHHHHHHHhCC-cceEEEeehHHHHHHHHHHHHHHHHhH
Confidence            655444434434455552 3333444444 5566677777776544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.60  E-value=9.9e-13  Score=132.49  Aligned_cols=305  Identities=12%  Similarity=0.004  Sum_probs=177.3

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHH----HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHH
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVT----LISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLL  131 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~----l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~  131 (471)
                      +....+...+.......++++++++++||+|||..    +.++..++.+   .  ....+++.+.+++.|++.|.+.+..
T Consensus        37 s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~---~--~~~~~~~~~~l~~~~~l~~~~~~~~  111 (382)
T TIGR00902        37 GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA---A--FSAGAHNAWLLFIAIGLFALFFSAG  111 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH---H--HHHhhhhHHHHHHHHHHHHHHHccc
Confidence            45666777777788888899999999999998443    3333322221   1  1123578999999999999888887


Q ss_pred             HhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc
Q 012075          132 WAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV  211 (471)
Q Consensus       132 ~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~  211 (471)
                      .+...++..+.  +++|++..|......++|.++||.+...+...    .+|++..+. ...+.. ..++.+.+ +|+..
T Consensus       112 ~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~----~g~~~~f~~-~~~~~~-~~~~~~~~-~~~~~  182 (382)
T TIGR00902       112 MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM----FDEQNILAI-LTAGLA-FMLIGFLI-KPTIP  182 (382)
T ss_pred             hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH----cChhHHHHH-HHHHHH-HHHHHHHc-CCCCC
Confidence            77777776653  57899999999999999999999986444321    235443332 222211 12222222 32211


Q ss_pred             ccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh----Hhhhccccccc-cccccchhhhHHHHHHHHHH
Q 012075          212 IRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF----FYSYQFNNVNG-LQFNLRTRGLNNVFYWGAQM  286 (471)
Q Consensus       212 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~s~~~~~~~~-~~~~~~~~~l~~~~~~i~~i  286 (471)
                      +++++++   +++++    .++..+.+++|+++......+....    ++++. +.+.. .+.+....++......++++
T Consensus       183 ~~~~~~~---~~~~~----~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~l~~~g~s~~~~g~l~~~~~~~~i  254 (382)
T TIGR00902       183 PKDAIPE---DESQG----DSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS-AIYWQAAGISASATGLLWGIGVLAEI  254 (382)
T ss_pred             CCccccc---ccccc----chhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCHhHHHHHHHHHHHHHH
Confidence            1111100   00111    1223345677776554443332211    22222 33322 23344455666666788888


Q ss_pred             HHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHH
Q 012075          287 LGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAM  366 (471)
Q Consensus       287 ~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  366 (471)
                      ++..+.+++.||  +|+|+.+.++.+... +....    +.    +.              ++........++.++..+.
T Consensus       255 ~~~~~~~~l~~r--~g~~~~l~~~~~~~~-~~~~~----~~----~~--------------~~~~~~~~~q~l~g~~~~~  309 (382)
T TIGR00902       255 IIFAFSNKLFQN--CSARDLLLISAIACV-GRWAI----IG----AI--------------EAFPLIFLLQILHCGTFAV  309 (382)
T ss_pred             HHHHHhHHHHhh--CCHHHHHHHHHHHHH-HHHHH----HH----hH--------------hhHHHHHHHHHHHHHHHHH
Confidence            888889999998  788886655544331 11111    11    01              2223456667888888888


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHH-HHHHHHHHhhhccc
Q 012075          367 FQSMVYWVIGALADDSETLSRYSGFYKGV-QSAGAAVAWQVDTH  409 (471)
Q Consensus       367 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~s~g~~i~~~~~~~  409 (471)
                      ..+....++.+. + +++++++.++++.. ..+|.+++..++..
T Consensus       310 ~~~~~~~~i~~~-~-~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       310 CHLAAMRYIAAQ-P-GSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHHhC-C-HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777677765 3 34557777877643 35666666655543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.58  E-value=1.5e-13  Score=141.97  Aligned_cols=317  Identities=16%  Similarity=0.127  Sum_probs=191.9

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHhhhhhHHHhhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFA-IAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~l-i~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ..+..++...+..+.+++++.+.||+|.|.+.+.|.++..+   ++....++++.|++ +...++.|+|.|+.+..+.++
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~---g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paivi  159 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL---GLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVI  159 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhh
Confidence            45566666777777889999999999999999999997765   33333446888865 557899999999999888888


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccc------
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVI------  212 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~------  212 (471)
                      +..+ .+++|+.++|+-.+...+|.++=|.+.-.+...    -+|++... ++..+..-..+.....+|..+..      
T Consensus       160 v~~Y-F~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~----~G~r~~~l-~~~~~~l~~~~~~~~~rp~~~~~~~~~~~  233 (509)
T KOG2504|consen  160 LGTY-FEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK----YGWRGALL-IFGGISLNVLVAGALLRPLSPPKKPNEEK  233 (509)
T ss_pred             hhhH-hHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH----hCcHHHHH-HHHHHHHHHHHHHHHcCCCCcCCCchhhh
Confidence            8866 688999999999888888776655554222221    24555443 33333343444555666611110      


Q ss_pred             -----------------cCCCCcc---c----------cccCCCHH---HHHHHH---HHHhcchhHHHHHHHHHHh--H
Q 012075          213 -----------------RDDGTHC---T----------NIKYSNVS---TEITQV---LKLFSNWKMLLIFPASWAS--N  254 (471)
Q Consensus       213 -----------------r~~~~~~---~----------~~~~~~~~---~~~~~~---~~~~~~~~~ll~~~~~~~~--~  254 (471)
                                       ++.+.+.   .          ...++..+   ++....   ++.+++|.++++..-..+.  +
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g  313 (509)
T KOG2504|consen  234 DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG  313 (509)
T ss_pred             hhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH
Confidence                             0000000   0          00000010   000111   3455666555444322222  2


Q ss_pred             hHhh-hcccccc-ccccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhccc
Q 012075          255 FFYS-YQFNNVN-GLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNY  332 (471)
Q Consensus       255 ~~~s-~~~~~~~-~~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~  332 (471)
                      +... ..++.+. ..+++....+....+.++..+++.++.|.+.|+.++.++....++.+++   ++....     .   
T Consensus       314 ~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~---gl~~~~-----~---  382 (509)
T KOG2504|consen  314 FNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA---GLARLF-----L---  382 (509)
T ss_pred             HHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH---HHHHHH-----H---
Confidence            2111 1112222 2334444566667778999999999999999985322333222222222   111100     0   


Q ss_pred             CCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          333 SHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      +         . .  ..+.......+++|++.+.+......++.++. +.++...++|+...+++++..++--+...
T Consensus       383 p---------~-~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~-g~~~l~~a~Gl~l~~~gi~~l~gpPiag~  446 (509)
T KOG2504|consen  383 P---------F-A--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLV-GLEKLSNAYGLLLLFQGIGALVGPPIAGL  446 (509)
T ss_pred             H---------H-h--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChhhcchHHHHHHHHhHHHHHcCccccee
Confidence            0         0 1  24455778888999999999988887888888 35567899999999998888877666543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.58  E-value=1.5e-12  Score=132.11  Aligned_cols=225  Identities=14%  Similarity=0.069  Sum_probs=126.5

Q ss_pred             Hhhhchhhhhhhcc-----chhH-HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC
Q 012075           72 TIFGILGGGIYNIL-----GPQV-TLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP  145 (471)
Q Consensus        72 ~i~~~~~g~l~d~~-----Grk~-~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~  145 (471)
                      .+..+++|+++||+     |||+ .+.++.+...+............+.+.+++..++.++..+...++..+++.|+.|+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            46779999999999     8876 56666665544333322211124577788888888888888888899999999999


Q ss_pred             CchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccCC
Q 012075          146 NRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYS  225 (471)
Q Consensus       146 ~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~  225 (471)
                      ++|+++.++......+|.++|+.+...+...   ..+|+.. +++..++..+..+..++.++|+..++  +++   +.++
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~---~~gw~~~-f~i~a~~~l~~~l~~~~~~e~~~~~~--~~~---~~~~  196 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADR---VLGWGNT-YLLMAGLMLAGALTTLWAPEPEVPAR--PPR---SLGE  196 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc---ccCHHHH-HHHHHHHHHHHHHHHHhcCCCccccc--ccc---hhHH
Confidence            9999999999999999999998876444321   1134433 33333333332222223322221111  000   0011


Q ss_pred             CHHHHHHHHHHHhcchhHHHHHHHHHHhH----hHhhhccccccc--cccccchhhhHHHHHH-HHHHHHhhhhhhhccc
Q 012075          226 NVSTEITQVLKLFSNWKMLLIFPASWASN----FFYSYQFNNVNG--LQFNLRTRGLNNVFYW-GAQMLGSVGIGYIFDF  298 (471)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~~s~~~~~~~~--~~~~~~~~~l~~~~~~-i~~i~g~~~~g~l~D~  298 (471)
                      +.++.+   .+.+++|+++......+...    ..+++. +.+..  .+++.++.++.....+ ++.+++.++.+++.||
T Consensus       197 ~~~~~~---~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r  272 (402)
T PRK11902        197 AVVGPL---RDFFSRRGAWALLLLIVLYKLGDAFAGSLS-TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR  272 (402)
T ss_pred             HHHHHH---HHHHhCcCHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            122222   23445565433322211111    111111 11121  2333334455443434 4578899999999999


Q ss_pred             CCCCccceeeehh
Q 012075          299 SFPTRRKRGFVGI  311 (471)
Q Consensus       299 ~~~gRr~~~~~g~  311 (471)
                        +|||+....+.
T Consensus       273 --~g~~~~l~~~~  283 (402)
T PRK11902        273 --LGLYRSLMLFG  283 (402)
T ss_pred             --HhHHHHHHHHH
Confidence              78887654443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.57  E-value=1.9e-12  Score=134.35  Aligned_cols=137  Identities=20%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             HHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC
Q 012075           65 TALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP  144 (471)
Q Consensus        65 ~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~  144 (471)
                      ....+..++++++.|.++|.+|||+.++++.+++++  +... .+.++|...++++-.+.|+|.|..... ...++|..|
T Consensus        85 ~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv--G~Iv-~atA~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p  160 (599)
T PF06609_consen   85 TAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV--GSIV-CATAQNMNTFIAGMVLYGVGAGVQELA-ALAISELVP  160 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh--HHHH-hhcCCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcc
Confidence            334456778889999999999999999999998776  3333 355899999999999999999887654 444799999


Q ss_pred             CCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHH-HHhccCCCc
Q 012075          145 PNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALL-SLVILPPGR  210 (471)
Q Consensus       145 ~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~p~~  210 (471)
                      .|.|+...++..........+|+.++..+..    ..+|||..|+.. .+..+++++ .+|.+||++
T Consensus       161 ~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~----~~~WRw~~~~~~-i~~~i~~vl~~~fY~PP~~  222 (599)
T PF06609_consen  161 NKWRGLGLAIASIPFIITTWISPLIAQLFAA----HSGWRWIFYIFI-IWSGIALVLIFFFYFPPPR  222 (599)
T ss_pred             cchhhhHhHHHHHHHHhhhcccHHHHHHhcc----CCCcchHHHHHH-HHHHHHHHHHHHHhCCCch
Confidence            9999887776655544445566666643322    246888766443 344444433 445566653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.57  E-value=9.6e-13  Score=132.59  Aligned_cols=303  Identities=9%  Similarity=-0.030  Sum_probs=167.4

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchh----HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHH
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQ----VTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLL  131 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk----~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~  131 (471)
                      ++...+...++......++++++|+++||+|||    +.+.++.++..+   .  ....+++.|.+++.|++.|++.+..
T Consensus        37 s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l~i~~~l~g~~~~~~  111 (382)
T PRK11128         37 TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV---A--FWFGAHSFWLLFVAIGLFNLFFSPL  111 (382)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH---H--HHHhcccHHHHHHHHHHHHHHHccc
Confidence            456667777777888888899999999999983    333333322211   1  1122578999999999999998888


Q ss_pred             HhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc
Q 012075          132 WAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV  211 (471)
Q Consensus       132 ~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~  211 (471)
                      +++..++..++  +++|++..+......++|..+||.++..+...    .+|+.. ++...+...+.. +..++.| +..
T Consensus       112 ~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~----~g~~~~-f~~~~~~~~~~~-~~~~~~~-~~~  182 (382)
T PRK11128        112 VPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW----FGEQAI-LWILTAGVASML-LGQLLRP-TIM  182 (382)
T ss_pred             ccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH----cChhHH-HHHHHHHHHHHH-HHHHccC-CCC
Confidence            77766676665  55688888888888899999999998444322    134433 222222222222 2222333 211


Q ss_pred             ccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh----Hhhhcccccc-ccccccchhhhHHHHHHHHHH
Q 012075          212 IRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF----FYSYQFNNVN-GLQFNLRTRGLNNVFYWGAQM  286 (471)
Q Consensus       212 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~s~~~~~~~-~~~~~~~~~~l~~~~~~i~~i  286 (471)
                      +++++++    ++++.+   ++..+.+++|+++......+..+.    .+++. +.+. +.+.+....++......++.+
T Consensus       183 ~~~~~~~----~~~~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~  254 (382)
T PRK11128        183 PQGESRQ----QESAGW---PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFS-AIYWQAAGYSASTIGYLWSLGVVAEV  254 (382)
T ss_pred             Ccccccc----cccccc---chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHH-HHHHHHCCCCHhHHHHHHHHHHHHHH
Confidence            1111100    000111   122334566766544433222221    11222 2222 223344445655556677888


Q ss_pred             HHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHH
Q 012075          287 LGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAM  366 (471)
Q Consensus       287 ~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  366 (471)
                      +...+.+++.||  +|+|+....+...+. +....    +.    +.              ++.....+..+++|+..+.
T Consensus       255 ~~~~~~g~l~~r--~~~~~~l~~~~~~~~-~~~~~----~~----~~--------------~~~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        255 LIFAFSNRLFRR--WSARDLLLLSAICGV-VRWGL----MG----ST--------------TALPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHHHHHHHHHHH--CCHHHHHHHHHHHHH-HHHHH----HH----hh--------------hhHHHHHHHHHHHHHHHHH
Confidence            888889999998  788887655443331 11111    10    00              1222345566677777776


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHH-HHHHHHHhhhc
Q 012075          367 FQSMVYWVIGALADDSETLSRYSGFYKGVQ-SAGAAVAWQVD  407 (471)
Q Consensus       367 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-s~g~~i~~~~~  407 (471)
                      ..+....++.+..  +.+.++..+.++... ++|.+++..+.
T Consensus       310 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~ig~~i~  349 (382)
T PRK11128        310 CHLAAMRYIAARP--GSEVIRLQALYSALAMGGSIAIMTVLS  349 (382)
T ss_pred             HHHHHHHHHHHCC--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555666654  334467777666442 44444444443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.54  E-value=5.3e-12  Score=131.00  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=86.7

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHhhhhhHHHhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNI-LGPQVTLISACSTYVLYAGSFLYYNHHKHQA-FAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~-~li~~r~l~G~g~g~~~~~  134 (471)
                      +.......+.......+..+++|+++|| +|||++++++.+++.+.......   +.+.. .++++|+++|+|.|...+.
T Consensus        49 ~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~---~~~~~~ll~~~~~l~~ig~g~~~~~  125 (489)
T PRK10207         49 QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM---SLLKPDLIFIALGTIAVGNGLFKAN  125 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHhccccccCC
Confidence            3333334444444555666799999999 99999999999988774433222   34433 4668999999999999888


Q ss_pred             hhhhhccCCCCC--chhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          135 EGAIMTSYPPPN--RKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       135 ~~~~i~~~~~~~--~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ..+.+.|..|++  +|++..+++....++|..+||.++..+
T Consensus       126 ~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207        126 PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            889999998876  568899999999999999999887433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.52  E-value=9.6e-12  Score=127.20  Aligned_cols=338  Identities=10%  Similarity=0.041  Sum_probs=170.1

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhh----ccchhHHHHHHHHHHHHHHHHHHhhhcccchH-----------------
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYN----ILGPQVTLISACSTYVLYAGSFLYYNHHKHQA-----------------  115 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~-----------------  115 (471)
                      +..........-....+.+++.|.++|    |+|||+.++++..+..+.....+  ..+++.+                 
T Consensus        38 ~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll--~~~~~~~~~~~~~~~~~~~~~~i~  115 (477)
T TIGR01301        38 HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI--GFAADIGHLFGDNLDKKTKPRAII  115 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH--HhCchhhhhccccccccchhHHHH
Confidence            444444445555666778899999999    59999999886544333111111  1122221                 


Q ss_pred             HHHHHHHHHhhhhhHHHhhhhhhhccCCCCCch--hhHHHHHHHHHHhhhhhhhHHHHHhhcc------CCCc-c----c
Q 012075          116 FAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRK--GTYISIFWSIFNMGGVIGGLIPFILNYN------RNEA-V----S  182 (471)
Q Consensus       116 ~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~R--G~~~g~~~~~~~~G~~iG~~i~~~~~~~------~~~~-~----~  182 (471)
                      ..+++=.+..++.........++++|..|+++|  +++.+++..+.++|.++|+.++......      ..+. +    +
T Consensus       116 ~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~  195 (477)
T TIGR01301       116 VFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCAN  195 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccch
Confidence            222333344446666666778899999998865  6899999999999999999987422100      0000 0    1


Q ss_pred             cccchhHHHHHHHHHHHHHHHhccCCCccccCCCC---ccccccCCCHHHHHHHHHHHhcc-h-hHHHHHHHH--HHhHh
Q 012075          183 VNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGT---HCTNIKYSNVSTEITQVLKLFSN-W-KMLLIFPAS--WASNF  255 (471)
Q Consensus       183 ~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~-~~ll~~~~~--~~~~~  255 (471)
                      .++. |.+-.++..+..+..++..++++...+++.   +....++.+..+.++++++.+++ | .+..++...  .+.++
T Consensus       196 ~~~~-F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~  274 (477)
T TIGR01301       196 LKSC-FLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAW  274 (477)
T ss_pred             HHHH-HHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            1112 222222222222233333333322111111   11111111112234455554432 3 333333333  33444


Q ss_pred             Hhhhcc-ccccc-ccccc------c-hh-----hhHHHHHHHHHHHHhhhhhhhcccCCCCc-cceeeehhhhHHHHHHH
Q 012075          256 FYSYQF-NNVNG-LQFNL------R-TR-----GLNNVFYWGAQMLGSVGIGYIFDFSFPTR-RKRGFVGIVVVALLGSA  320 (471)
Q Consensus       256 ~~s~~~-~~~~~-~~~~~------~-~~-----~l~~~~~~i~~i~g~~~~g~l~D~~~~gR-r~~~~~g~~~~~~~~~~  320 (471)
                      +....| +.+.. ..|+.      . +.     .+..+.+.+...+.+++.-++.+|  +|+ |+....+..+.+.+...
T Consensus       275 f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~--~g~~k~~~~~s~~~~~~~l~~  352 (477)
T TIGR01301       275 FPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG--WGAGKRLWGIVNIILAICLAA  352 (477)
T ss_pred             HHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHHHH
Confidence            221111 22221 11110      0 11     233455566666666666667766  775 45444443333222111


Q ss_pred             HHHhHhhhhcccCCCC-C--CCccCCCCCCCC-chhHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CchhhhHHHHHHHHH
Q 012075          321 IWAGGLANQLNYSHDK-P--PAKLDFKNSGSD-FAGPFVLYFCYGLLDAMFQSMVYWVIGALAD-DSETLSRYSGFYKGV  395 (471)
Q Consensus       321 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~  395 (471)
                      ...     ....+++. +  .....+... .+ ....++++...|+..+..++.+|.++++.-+ +.++.+..+|++|.+
T Consensus       353 ~~~-----i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~  426 (477)
T TIGR01301       353 TVL-----VTYVAKNSRYYDGDGESLPPP-TGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA  426 (477)
T ss_pred             HHH-----HHhhhhccccccccccccCcc-hhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHH
Confidence            111     11111000 0  000011110 11 2346778888999999999999999999873 346668899999988


Q ss_pred             HHHHHHHHhh
Q 012075          396 QSAGAAVAWQ  405 (471)
Q Consensus       396 ~s~g~~i~~~  405 (471)
                      ..+...+.-.
T Consensus       427 I~lpQii~sl  436 (477)
T TIGR01301       427 IVIPQIIVSL  436 (477)
T ss_pred             HHHHHHHHHH
Confidence            8777766654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.51  E-value=2.5e-11  Score=125.73  Aligned_cols=115  Identities=13%  Similarity=0.130  Sum_probs=94.0

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNI-LGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      ++...+...+.......++++++|+++|| +|||+++.++.+++.+.....   ..+++.+.++++|++.|+|.|...+.
T Consensus        46 s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~---~~~~~~~~~~~~~~l~g~g~g~~~~~  122 (475)
T TIGR00924        46 SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML---AMSIYPDLIFYGLGTIAVGSGLFKAN  122 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH---HhcccHhHHHHHHHHHHhccccccCC
Confidence            34455666777777788899999999999 899999999998877633222   23567788899999999999998888


Q ss_pred             hhhhhccCCCCCc---hhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          135 EGAIMTSYPPPNR---KGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       135 ~~~~i~~~~~~~~---RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ..+.++|..|+++   |+++.++++...++|..+|+.+...+
T Consensus       123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l  164 (475)
T TIGR00924       123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI  164 (475)
T ss_pred             HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence            8888888887654   89999999999999999999987433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PTZ00207 hypothetical protein; Provisional

Probab=99.51  E-value=5.4e-12  Score=131.76  Aligned_cols=98  Identities=18%  Similarity=0.217  Sum_probs=78.5

Q ss_pred             HHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh---cccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCc
Q 012075           71 FTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN---HHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNR  147 (471)
Q Consensus        71 ~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~---~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~  147 (471)
                      .++..++.|++.||+|||++++++.+.+.+.........   ..++.+.+++.|++.|+|.+...++....+.+++ |++
T Consensus        74 ~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~  152 (591)
T PTZ00207         74 VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSN  152 (591)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhh
Confidence            345667789999999999999999998776443333210   0258899999999999999998888888888886 589


Q ss_pred             hhhHHHHHHHHHHhhhhhhhHH
Q 012075          148 KGTYISIFWSIFNMGGVIGGLI  169 (471)
Q Consensus       148 RG~~~g~~~~~~~~G~~iG~~i  169 (471)
                      ||+++|+......+|..+.+.+
T Consensus       153 RG~a~Gi~~~~~gLGsaI~~~l  174 (591)
T PTZ00207        153 RGAVVAIMKTFTGLGSAILGSI  174 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999754333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.50  E-value=3.7e-12  Score=131.59  Aligned_cols=377  Identities=11%  Similarity=-0.030  Sum_probs=195.6

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccc-----hhHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHhhhhhH
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILG-----PQVTLISACSTYVLYAGSFLYYNHHKHQA-FAIAAGAILGIGAGL  130 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----rk~~l~i~~~~~~~~~~~~~~~~~~~~~~-~li~~r~l~G~g~g~  130 (471)
                      +...+...+...+...+-++ +|+++|+++     ||+.++++.++...  .+....+..++.. ...+..++.+++.+.
T Consensus        60 ~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~--~~~~~l~~~~~~~~~~~~~~~l~~~~~a~  136 (468)
T TIGR00788        60 GARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSA--ILYGLLPGKVSSAKVAAAFIFLAALAKAL  136 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHH--HHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            44444445555666555444 999999998     88888888765421  1212112223433 444589999999999


Q ss_pred             HHhhhhhhhccCCCCCchhh---HHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC
Q 012075          131 LWAAEGAIMTSYPPPNRKGT---YISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP  207 (471)
Q Consensus       131 ~~~~~~~~i~~~~~~~~RG~---~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  207 (471)
                      .-++..++..|..+ |+++.   ..++.+....+|.++|+.++..+...    .+|+.. +.+..++..+..+..+++.+
T Consensus       137 ~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~----~~~~~~-f~~~a~l~ll~~~~~~~~~E  210 (468)
T TIGR00788       137 YDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK----TLTRIL-FLITAALLLLQLFVSNLSKE  210 (468)
T ss_pred             HHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh----cCcchH-HHHHHHHHHHHHHHHHhccc
Confidence            98888899999887 44433   44556666678999998887433211    123333 33333344433333334433


Q ss_pred             CCccccCCCCccc----cccCC----CHHHHHHHHHHHhcchhHHHHHH-HHH-HhHhHhhhcccc--c--cccccccch
Q 012075          208 PGRVIRDDGTHCT----NIKYS----NVSTEITQVLKLFSNWKMLLIFP-ASW-ASNFFYSYQFNN--V--NGLQFNLRT  273 (471)
Q Consensus       208 p~~~~r~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~ll~~~-~~~-~~~~~~s~~~~~--~--~~~~~~~~~  273 (471)
                      ++...+++..+..    .....    ..++.+++.++.+++|+++.... +++ +... .+...+.  +  ...+++...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~-~~~~~~~f~~~~~~lG~s~~~  289 (468)
T TIGR00788       211 RRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANL-PGASGSVFCATTQCLPGGPSF  289 (468)
T ss_pred             ccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhc-CCCCceeEEEEcccCCCCcch
Confidence            2211111000000    00000    12333455666667776654222 222 1111 0000000  1  112445556


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhH
Q 012075          274 RGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGP  353 (471)
Q Consensus       274 ~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (471)
                      .++.....+++.+++....+++.+|  ++.|+...++.++.........    .....+..       ....  +.....
T Consensus       290 ~G~~~~~~~v~~i~g~~~~~~~~~~--~~~r~~l~~~~~l~~~~~~~~~----~l~~~~~~-------~~gi--~~~~~~  354 (468)
T TIGR00788       290 SGMSKVVGNLGSLCGVGGYDRFLKT--FPYRLLFGVTTLLYTLSSLFDL----ILVKRWNL-------AFGI--SDEVFV  354 (468)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHhCce----eeeecccc-------ccCC--CCeeee
Confidence            7777777889999999999988876  7888766555443311111000    00000100       0000  111112


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCc---h--h--hHHHHHHHHHHHh
Q 012075          354 FVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKV---S--L--LSQLVVNWSLTTI  426 (471)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~---p--~--~~~~~~~~~~~~~  426 (471)
                      ....++.++..+........++.++.++ +..++.++++.+++++|..++-.++....   +  .  ...+.....+..+
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~  433 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPS-GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSL  433 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCC-CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence            3334455566555555566677887743 34489999999999999999887654321   1  1  1111121122222


Q ss_pred             hhhhhhheeeeeeccCCCccCccccccCcCCCCCC
Q 012075          427 SYPLLVILVLLAVKDEKSPEESTNSKEVTLPAADD  461 (471)
Q Consensus       427 ~~~~~i~~~~~~~pet~~~~~~~~~~~~~~~~~~~  461 (471)
                      .-+..+++++ ++|+ .++|-+..+|++.++++.|
T Consensus       434 ~~l~~l~~~~-llP~-~~~~~~~~~~~~~~~~~~~  466 (468)
T TIGR00788       434 APLLPLPLLH-LLPR-LEDVIDTEGKRAISKAAPE  466 (468)
T ss_pred             HHHHHHHHHH-hCCC-CccccCccchhhhhhhccc
Confidence            2344555554 7898 5555555555555555443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.49  E-value=3.7e-13  Score=128.02  Aligned_cols=347  Identities=13%  Similarity=0.106  Sum_probs=191.2

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      ..+.....+.++-+++..+|.++|++|||+.+.+..+.-.++  +.+. ..++|+..+.+.|.+.|+|.|. .+...++-
T Consensus       115 ~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~--~~is-~~spnf~~L~~f~~l~~~g~gg-~pv~~~~y  190 (528)
T KOG0253|consen  115 APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF--GVIS-GASPNFASLCVFRALWGFGVGG-LPVDSAIY  190 (528)
T ss_pred             hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH--HHhh-cCCCCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence            344556677888999999999999999999999988765542  2222 3478999999999999999998 55556666


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC--CCcc--c---
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP--PGRV--I---  212 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--p~~~--~---  212 (471)
                      .|.-|..+|+..+-.. ..+.+|.++...+.++...+.    +|||.++....-+. +.+ .+.+..|  ||..  .   
T Consensus       191 le~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~----gwr~~l~~~~~pl~-~~a-~f~~w~~ESpRf~~~~G~~  263 (528)
T KOG0253|consen  191 LEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF----GWRYLLFTSSTPLM-FAA-RFLVWVYESPRFYLAKGDD  263 (528)
T ss_pred             HHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHhHHH-HHH-HHHhhcccCcchhhhcCCh
Confidence            7888999999988887 889999999999998765432    46655443331111 111 2233334  3321  0   


Q ss_pred             -----------cCCCCccc-----------cccCC------------CHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hh
Q 012075          213 -----------RDDGTHCT-----------NIKYS------------NVSTEITQVLKLFSNWKMLLIFPASWASNF-FY  257 (471)
Q Consensus       213 -----------r~~~~~~~-----------~~~~~------------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~  257 (471)
                                 |..+.+.+           +++++            +.+....+++.--.||+-+++..+.+...+ +|
T Consensus       264 ~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyy  343 (528)
T KOG0253|consen  264 YKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYY  343 (528)
T ss_pred             HHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHH
Confidence                       11110000           00000            000011111111134444444444443333 12


Q ss_pred             hhcccc---------------cccccccc-------chhhhH-HHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhH
Q 012075          258 SYQFNN---------------VNGLQFNL-------RTRGLN-NVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVV  314 (471)
Q Consensus       258 s~~~~~---------------~~~~~~~~-------~~~~l~-~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~  314 (471)
                      +.++-+               ...+....       ....+. .+.....++.|.++.+.++||  +|||+.+-...+++
T Consensus       344 g~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver--lGRKkTMal~l~~f  421 (528)
T KOG0253|consen  344 GSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER--LGRKKTMALSLILF  421 (528)
T ss_pred             HHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH--hcchhHHHHHHHHH
Confidence            211100               00000000       011122 345678889999999999999  89999665444333


Q ss_pred             HHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 012075          315 ALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKG  394 (471)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  394 (471)
                      .++.+..+      .            +. +  ++ ......+..=.|.++++ ...|.|.+|.|+.. -++.++|.-..
T Consensus       422 ~iflfll~------~------------c~-~--rn-~~tvllf~arafisg~f-qvaYvYtPEVyPTa-vRatgvGtcSs  477 (528)
T KOG0253|consen  422 GIFLFLLT------T------------CK-T--RN-AYTVLLFTARAFISGAF-QVAYVYTPEVYPTA-VRATGVGTCSS  477 (528)
T ss_pred             HHHHHHHH------H------------hc-C--cc-hhHHHHHHHHHHHhchh-eEEEEecCcccchh-hhhcchhhhhh
Confidence            22222111      0            10 1  11 12233333334444444 45788899999432 33677777676


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHHHHHHhhhhhhhheeeeeeccCCCcc
Q 012075          395 VQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVILVLLAVKDEKSPE  446 (471)
Q Consensus       395 ~~s~g~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~pet~~~~  446 (471)
                      +.-+|..++-++.-..   .....+...++..+++.+.+.+-++.-||+..+
T Consensus       478 maRIggI~~p~iA~~~---e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  478 MARIGGIFSPVIAMRA---ELSTSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             HHhhhhhhhhHHHHHh---ccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            6667776666554111   001123444454444443444557777887653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.45  E-value=1.1e-10  Score=120.07  Aligned_cols=359  Identities=13%  Similarity=0.118  Sum_probs=185.7

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHH-HHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVL-YAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~-~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      .+..++..+..++-.++.|.++|+-|+|+-++........ ....++. ...++.+...+.-++.-++.+...+.-.+++
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~-v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF-VSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445566666777788999999999987777666544333 2222222 1123333334444444455555566678889


Q ss_pred             ccCCCCCch--------------------------hhHHHHHHHHHHhhhhhhhHHHHHhhccCCCc----cccccchhH
Q 012075          140 TSYPPPNRK--------------------------GTYISIFWSIFNMGGVIGGLIPFILNYNRNEA----VSVNDGTYI  189 (471)
Q Consensus       140 ~~~~~~~~R--------------------------G~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~----~~~~~~~~~  189 (471)
                      .|+++++++                          ++..+.-+..-++|.++.-++........++.    ...|....+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            999998888                          99999999999999988877765543322211    011111111


Q ss_pred             HHHHHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHh----cchhHHHHHH-HHHHh-Hh--Hhhhcc
Q 012075          190 GFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLF----SNWKMLLIFP-ASWAS-NF--FYSYQF  261 (471)
Q Consensus       190 ~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~-~~~~~-~~--~~s~~~  261 (471)
                      ......++..... ++.|+++..+..+.     .+...++.++++++.+    +.|.+..... .+++. ++  ..+.. 
T Consensus       232 ~a~ww~vfsiP~~-~~~~~~~~~~~~~~-----~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~-  304 (477)
T PF11700_consen  232 VALWWLVFSIPLF-LWLPDRPGPRPLPS-----GSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFA-  304 (477)
T ss_pred             HHHHHHHHHHHHH-HhCCCCCCCCCCCc-----chhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            1111112222222 23333321111100     1111222333333322    2333322222 12222 21  00110 


Q ss_pred             ccccc--cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCcc--ceeeehhhhHHHHHHHHHHhHhhhhcccCCCCC
Q 012075          262 NNVNG--LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRR--KRGFVGIVVVALLGSAIWAGGLANQLNYSHDKP  337 (471)
Q Consensus       262 ~~~~~--~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (471)
                      ..+..  .+++..+.....+...+.+++|+++.|++.||  +|-|  +.++.+.++...  ...++  +  ....++   
T Consensus       305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r--~g~k~~~~l~~~l~~~~~--i~~~g--~--~G~~~~---  373 (477)
T PF11700_consen  305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR--FGPKTKRTLLISLILWII--IPLYG--L--FGFWPS---  373 (477)
T ss_pred             HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHH--HHHHH--H--HHhhhc---
Confidence            11111  13343344455677899999999999999999  6665  544443332211  11111  1  000110   


Q ss_pred             CCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhHHH
Q 012075          338 PAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQL  417 (471)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~~~  417 (471)
                        ..+.    ...+..++..+++|++.+..|+..-++.+++.++.++ ++.+|++....-.++.++-++-....-...  
T Consensus       374 --~~g~----~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e-~efFgly~i~gk~ss~lGPll~g~i~~~tg--  444 (477)
T PF11700_consen  374 --FFGL----KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE-AEFFGLYAITGKASSWLGPLLFGLITDATG--  444 (477)
T ss_pred             --ccCc----ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence              0011    1122357777889999999999999999999965544 899999998877777766554332111110  


Q ss_pred             HHHHHHHHhhh--hhhhheeeeeeccCCCccCc
Q 012075          418 VVNWSLTTISY--PLLVILVLLAVKDEKSPEES  448 (471)
Q Consensus       418 ~~~~~~~~~~~--~~~i~~~~~~~pet~~~~~~  448 (471)
                      ...+++..+..  +...+ .++.+++++..||.
T Consensus       445 ~~r~g~~~l~~lf~~gl~-ll~~v~~~~g~~~A  476 (477)
T PF11700_consen  445 SQRYGFLFLLVLFLIGLI-LLFFVDVEKGREDA  476 (477)
T ss_pred             CchhHHHHHHHHHHHHHH-HHhhccchhhhhcc
Confidence            02233222211  22223 33667888776653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.43  E-value=3.9e-11  Score=116.49  Aligned_cols=287  Identities=17%  Similarity=0.170  Sum_probs=172.7

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      +...........|.++.+.++..+.+.+|+|+|..+++|..++.+....++-.+...++.+++++-++.|.|.+..-+++
T Consensus        46 s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~Letaa  125 (422)
T COG0738          46 TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA  125 (422)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhcc
Confidence            34455666777889999999999999999999999999999998854444332334677889999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccC-----CCc----------cccccchhHHHHHHHHHHHH
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNR-----NEA----------VSVNDGTYIGFMCFMSAGAL  200 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~i  200 (471)
                      ..|++.+.++++..+-+++.+.++.+|.++||+++..+..+.     ++.          ..++ ..|.....+..+..+
T Consensus       126 Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~-~pYl~~~~~lvll~v  204 (422)
T COG0738         126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQ-FPYLILAGLLVLLAV  204 (422)
T ss_pred             chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999974433210     000          0111 234444433333333


Q ss_pred             HHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHH-HHHHHhHh---Hhhhccccccc--cccccchh
Q 012075          201 LSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIF-PASWASNF---FYSYQFNNVNG--LQFNLRTR  274 (471)
Q Consensus       201 ~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~---~~s~~~~~~~~--~~~~~~~~  274 (471)
                      .....+.|+..  +++++.  .++++.     ...+.+++|+..+.. -+++|.|.   ..++. .++..  ...+..+.
T Consensus       205 ~~~~~k~p~~~--~~~~~~--~~~~~~-----~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl-~~y~~~~~g~~~~~a  274 (422)
T COG0738         205 LILLSKLPDLQ--VAAPSL--GASGSA-----GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFL-VSYLEELLGLNEQQA  274 (422)
T ss_pred             HHHhccCCcCC--cccccc--cccccc-----hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhcCCccHHHH
Confidence            33333334321  111110  011110     122344556654443 34455543   22333 33332  23344445


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHH
Q 012075          275 GLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPF  354 (471)
Q Consensus       275 ~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
                      +.....+.++.++|..++..+..|+. .+|-+........     ..... .++.                  .+. ..+
T Consensus       275 a~~~s~~~~~~~vGRFig~~lm~~~~-~~k~Laf~a~~~i-----ll~~~-~~l~------------------~g~-v~~  328 (422)
T COG0738         275 AYYLSFFWVGFMVGRFIGSALMSRIK-PEKYLAFYALIAI-----LLLLA-VALI------------------GGV-VAL  328 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHH-----HHHHH-HHHh------------------cCh-HHH
Confidence            56667778888899888877777732 2333222221111     11110 0101                  122 234


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhc
Q 012075          355 VLYFCYGLLDAMFQSMVYWVIGALA  379 (471)
Q Consensus       355 ~~~~~~g~~~~~~~~~~~~~i~~~~  379 (471)
                      ...++.|++.+...|.++++.-+..
T Consensus       329 ~~l~~ig~F~simfPTIfslal~~l  353 (422)
T COG0738         329 YALFLIGLFNSIMFPTIFSLALKNL  353 (422)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcc
Confidence            4555668888888888887765554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.41  E-value=8.3e-11  Score=121.98  Aligned_cols=325  Identities=8%  Similarity=-0.016  Sum_probs=166.2

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhh----ccch-hHHHHHHHHHHHHHHHHHHhhh-cccc--hHHHHHHHHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYN----ILGP-QVTLISACSTYVLYAGSFLYYN-HHKH--QAFAIAAGAILGIG  127 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Gr-k~~l~i~~~~~~~~~~~~~~~~-~~~~--~~~li~~r~l~G~g  127 (471)
                      ++...+....+.-..-++..++.|.++|    |+|| |+-++++.+...+.....+... ..++  ...+++.-++.+++
T Consensus        40 s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~  119 (473)
T PRK10429         40 SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMT  119 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHH
Confidence            3555555555566667788899999999    6698 5555566665544322222210 0111  23455666677788


Q ss_pred             hhHHHhhhhhhhccCC-CCCchhhHHHHHHHHHHhhhhhhhHHHHHh-hccCCCccccccch-hHHHHHHHHHHHHHHHh
Q 012075          128 AGLLWAAEGAIMTSYP-PPNRKGTYISIFWSIFNMGGVIGGLIPFIL-NYNRNEAVSVNDGT-YIGFMCFMSAGALLSLV  204 (471)
Q Consensus       128 ~g~~~~~~~~~i~~~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~  204 (471)
                      .+...+.-.+...|++ ++++|.+..++-....++|..+++.+...+ ....+......+.. ..+..++..+..+..++
T Consensus       120 ~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~  199 (473)
T PRK10429        120 YTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR  199 (473)
T ss_pred             HHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            8877777778889988 699999999986666677655554443211 11110000001111 11222222222222222


Q ss_pred             ccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh----Hhhhccccccccccc-cchhhhHHH
Q 012075          205 ILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF----FYSYQFNNVNGLQFN-LRTRGLNNV  279 (471)
Q Consensus       205 l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~s~~~~~~~~~~~~-~~~~~l~~~  279 (471)
                      ..+++.. + ++.+..++++.+.++.++..   +++|.++.+....+....    ..++. ..+..+..+ ....+....
T Consensus       200 ~~~e~~~-~-~~~~~~~~~~~~~~~~~~~~---~~n~~~~~ll~~~~~~~~~~~~~~~~~-~y~~~y~~~~~~~~~~~~~  273 (473)
T PRK10429        200 NVHEVYS-S-DNQVSAEGSHLTLKDIVALI---YKNDQLSCLLGMALAYNIASNIINGFA-IYYFTYVIGDADLFPYYLS  273 (473)
T ss_pred             CceecCC-c-cccccccccCCCHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHhhhe-eeEEEEECCCHHHHHHHHH
Confidence            2222211 0 10000111233444444332   355554443332222211    11111 111122122 122334444


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHH
Q 012075          280 FYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFC  359 (471)
Q Consensus       280 ~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (471)
                      ..+++.+++.++.+++.||  +|||+..+++..+. +++.+...   . ....+           .  .+.....+..++
T Consensus       274 ~~~i~~ii~~~~~~~l~~r--~gkk~~~~~~~~~~-~~~~~~~~---~-~~~~~-----------~--~~~~~~~i~~~l  333 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKS--LSRRILWAGASIFP-VLSCGVLL---L-MGLAA-----------P--HNALLIVIAGIL  333 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHH-HHHHHHHH---H-HhccC-----------c--hhHHHHHHHHHH
Confidence            5568888998999999998  89998776655433 11111111   0 00001           0  122234455566


Q ss_pred             HHhhHHHHHHHHHHHHHHhc------CCchhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          360 YGLLDAMFQSMVYWVIGALA------DDSETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       360 ~g~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                      .+++.+..++..+++++|..      +..|+.+..++...+.+-++.+++..+
T Consensus       334 ~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        334 LNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888887774      223344668888888887887777543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.41  E-value=1.4e-10  Score=117.16  Aligned_cols=305  Identities=10%  Similarity=0.043  Sum_probs=151.8

Q ss_pred             HHHHHhhhchh-hhhhhccchhHHHHHHHHHH-HHHHHHHHhhhcccc-hHHHHHHHHHHhhhhhHHHhhhhhhhccCCC
Q 012075           68 YTTFTIFGILG-GGIYNILGPQVTLISACSTY-VLYAGSFLYYNHHKH-QAFAIAAGAILGIGAGLLWAAEGAIMTSYPP  144 (471)
Q Consensus        68 ~~~~~i~~~~~-g~l~d~~Grk~~l~i~~~~~-~~~~~~~~~~~~~~~-~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~  144 (471)
                      +..-.+.++++ +...||+|||+..++...+. ..............+ ...++..-++..+..+..-+....+..|..+
T Consensus        48 ~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~  127 (390)
T TIGR02718        48 WVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFN  127 (390)
T ss_pred             HHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33333444444 44677789999976665332 111111111111222 2233444445555555555555666667777


Q ss_pred             CCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccC
Q 012075          145 PNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKY  224 (471)
Q Consensus       145 ~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~  224 (471)
                      +++++...+.......+|.++|+.....+...    .+|+. .|++..++..+..+..++++|+++ +++++       +
T Consensus       128 ~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~----~gw~~-~f~~~a~l~~~~~~~~~~~~~~~~-~~~~~-------~  194 (390)
T TIGR02718       128 GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK----FGQRP-AFLLVACVPLASLVCVLWLKDRAV-ASPEA-------P  194 (390)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHH-HHHHHHHHHHHHHHHHHHcCCCCc-Ccccc-------c
Confidence            77778888888777778888887654222211    12333 344444444443434444433221 11100       0


Q ss_pred             CCHHHHHHHHHHHhcchhHHHHHHHHHHhH----hHhhhcccccc-ccccccchhhhHHHHHH-HHHHHHhhhhhhhccc
Q 012075          225 SNVSTEITQVLKLFSNWKMLLIFPASWASN----FFYSYQFNNVN-GLQFNLRTRGLNNVFYW-GAQMLGSVGIGYIFDF  298 (471)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~~s~~~~~~~-~~~~~~~~~~l~~~~~~-i~~i~g~~~~g~l~D~  298 (471)
                      +.   +.++..+.+++|+++......+...    ..+++. +.+. +.+++.++.++.....+ +..+++..+.|++.||
T Consensus       195 ~~---~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r  270 (390)
T TIGR02718       195 LA---RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS-KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR  270 (390)
T ss_pred             hh---hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh-hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            01   1123344556665543333222221    122222 2222 23445555566554444 4566778889999999


Q ss_pred             CCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 012075          299 SFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGAL  378 (471)
Q Consensus       299 ~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  378 (471)
                        +|+|+....+........ ..+.   ....           .+..  +.........++.++..+...+..+....+.
T Consensus       271 --~g~~~~l~~~~~~~~~~~-~~~~---~~~~-----------~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  331 (390)
T TIGR02718       271 --AGLWRTFILGVGLAGSLA-LLWF---AQAA-----------FWLA--PGIAVAWSCSAFGSLITGITSVAIYTAFMRF  331 (390)
T ss_pred             --hhHHHHHHHHHHHHHHHH-HHHH---HHHH-----------cccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              788887665543331111 1111   0000           0111  1111222333334445555555556565565


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          379 ADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ..+++..++.++..+...++|..++-.+..
T Consensus       332 ~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G  361 (390)
T TIGR02718       332 AGDGDQAGTDVTAVQSTRDLGELIASSIAG  361 (390)
T ss_pred             hCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543355688999999998888888877654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.41  E-value=3.6e-10  Score=117.82  Aligned_cols=98  Identities=14%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             hhhchhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCC--ch
Q 012075           73 IFGILGGGIYNI-LGPQVTLISACSTYVLYAGSFLYYNHH-KHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPN--RK  148 (471)
Q Consensus        73 i~~~~~g~l~d~-~Grk~~l~i~~~~~~~~~~~~~~~~~~-~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~--~R  148 (471)
                      ..++++|+++|| +|||+.++++.+++.+....+   ..+ ++.+.++++|++.|+|.|...+...+++.|..|++  +|
T Consensus        72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~---~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~  148 (500)
T PRK09584         72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV---AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRL  148 (500)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhh
Confidence            345689999999 599999999998876532222   223 34567788999999999988887788899988754  35


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          149 GTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       149 G~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ++.+++++...++|..+||.+...+
T Consensus       149 ~~~~~~~~~~~~iG~~~gp~i~g~l  173 (500)
T PRK09584        149 DGAFTMYYMSINIGSFFSMLATPWL  173 (500)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999999987433

>PRK09669 putative symporter YagG; Provisional

Probab=99.40  E-value=1.3e-10  Score=119.60  Aligned_cols=319  Identities=11%  Similarity=0.001  Sum_probs=167.5

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhc----cchh-HHHHHHHHHHHHHHHHHHhh-hc--ccchHHHHHHHHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNI----LGPQ-VTLISACSTYVLYAGSFLYY-NH--HKHQAFAIAAGAILGIG  127 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grk-~~l~i~~~~~~~~~~~~~~~-~~--~~~~~~li~~r~l~G~g  127 (471)
                      ++...+....+.-...++..++.|.++||    +||| +-++.+.+.+.+.....+.. ..  ....+.+++..++.+.+
T Consensus        43 s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~  122 (444)
T PRK09669         43 SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLV  122 (444)
T ss_pred             CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence            45555666666667778888999999999    7874 44556655554432222221 10  11234566667777777


Q ss_pred             hhHHHhhhhhhhccCC-CCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCC-ccccccc-hhHHHHHHHHHHHHHHHh
Q 012075          128 AGLLWAAEGAIMTSYP-PPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNE-AVSVNDG-TYIGFMCFMSAGALLSLV  204 (471)
Q Consensus       128 ~g~~~~~~~~~i~~~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~~~~  204 (471)
                      .+...+...+..+|++ ++++|++..++.....++|..+++.+...+....++ .....|. ..+++.++..+..+..++
T Consensus       123 ~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        123 YTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             HHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            7766666677888887 568999999999988889888887654222111100 0011111 122222222222222222


Q ss_pred             ccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhccccccccccccc-hhhhHHHH
Q 012075          205 ILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGLQFNLR-TRGLNNVF  280 (471)
Q Consensus       205 l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~~~~~~-~~~l~~~~  280 (471)
                      ..+++.. +++      +++.+.++++++   .+++|.++.+....+....   ..+.....+..+..+.. ..+.....
T Consensus       203 ~~~e~~~-~~~------~~~~~~~~~~~~---~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~  272 (444)
T PRK09669        203 MTKERYT-PEV------DNSSSVWKDLKL---LLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVT  272 (444)
T ss_pred             CeEEecC-CCC------cCCCCHHHHHHH---HhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHH
Confidence            2222111 110      112334444433   3456654443332222111   01111011111222221 22233344


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHH
Q 012075          281 YWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY  360 (471)
Q Consensus       281 ~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (471)
                      ..+..+++.++.+++.||  +|||+....+......+....+      .  .+.             .+.....+..++.
T Consensus       273 ~~i~~ii~~~~~~~l~~r--~gk~~~~~~~~~~~~~~~~~~~------~--~~~-------------~~~~~~~~~~~i~  329 (444)
T PRK09669        273 GMIAGLFGALLSERLLGK--FDRVRAFKWTIVAFVILSALIF------F--IPP-------------SNVWLIFALNILF  329 (444)
T ss_pred             HHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHH------H--hCc-------------chHHHHHHHHHHH
Confidence            457777888888899999  7898877655433311111111      0  110             1222345555678


Q ss_pred             HhhHHHHHHHHHHHHHHhcC-C-----chhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          361 GLLDAMFQSMVYWVIGALAD-D-----SETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       361 g~~~~~~~~~~~~~i~~~~~-~-----~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      +++.+..++..++++++..+ +     .|+.+..++...+.+.+|.+++-.+.
T Consensus       330 g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~  382 (444)
T PRK09669        330 NFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV  382 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888877652 1     22335567888877778877775443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.32  E-value=4.8e-11  Score=109.92  Aligned_cols=105  Identities=18%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             HHHHHHHHHh----hhchhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           64 NTALYTTFTI----FGILGGGIYNI-LGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        64 ~~~~~~~~~i----~~~~~g~l~d~-~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ..++|..+..    -|++.|++.|| +|-|+.-++-++...+....+..-...+..|+++++|++.|+|.-...++|..|
T Consensus        81 ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~y  160 (459)
T KOG4686|consen   81 FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKY  160 (459)
T ss_pred             eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcce
Confidence            4455555553    46889999996 676665444443322222111111124678999999999999999999999999


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhH
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGL  168 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~  168 (471)
                      +..+...++.+..+|++.+.-.+|+.+--+
T Consensus       161 av~wFKGKELn~vfGlqlSvAR~GstvNf~  190 (459)
T KOG4686|consen  161 AVYWFKGKELNFVFGLQLSVARLGSTVNFL  190 (459)
T ss_pred             eEEEecCccccchhhHHHHHHHhhceeeee
Confidence            999999999999999999999999866433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.30  E-value=6.9e-11  Score=120.99  Aligned_cols=320  Identities=11%  Similarity=0.039  Sum_probs=176.1

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhh----ccchhHHHH-HHHHHHHHHHHHHHhh-h--ccc--chHHHHHHHHHHh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYN----ILGPQVTLI-SACSTYVLYAGSFLYY-N--HHK--HQAFAIAAGAILG  125 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Grk~~l~-i~~~~~~~~~~~~~~~-~--~~~--~~~~li~~r~l~G  125 (471)
                      ++...+......-...++..++.|.++|    |+|||+..+ +|.+...+.....+.. .  .+.  ....+.+.-++..
T Consensus        35 ~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~  114 (428)
T PF13347_consen   35 SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFD  114 (428)
T ss_pred             CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHH
Confidence            3444444444445556677799999999    899776655 5555555433222221 0  001  1234577777778


Q ss_pred             hhhhHHHhhhhhhhccCCC-CCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCC-cc--ccccchhHHHHHHHHHHHHH
Q 012075          126 IGAGLLWAAEGAIMTSYPP-PNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNE-AV--SVNDGTYIGFMCFMSAGALL  201 (471)
Q Consensus       126 ~g~g~~~~~~~~~i~~~~~-~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~i~  201 (471)
                      ++.........+...|.++ +++|.+..+.-.....+|.++.+.+...+....++ ..  ++++. ..+..++..+..++
T Consensus       115 ~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~-~~v~~iv~~v~~~i  193 (428)
T PF13347_consen  115 IAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM-ALVLAIVGLVFFLI  193 (428)
T ss_pred             HhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH-HHHHHHHHHHHhhh
Confidence            8888887778888899987 67999999999888888886555554222211111 11  12221 12222222222222


Q ss_pred             HHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhc---ccccccccccc-chhhhH
Q 012075          202 SLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQ---FNNVNGLQFNL-RTRGLN  277 (471)
Q Consensus       202 ~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~---~~~~~~~~~~~-~~~~l~  277 (471)
                      ..+..++++. +.+    +.+++.+.++.+++.   +++|.+..+....+...+.+...   ...+..+..+. ...+..
T Consensus       194 ~~~~~ke~~~-~~~----~~~~~~~~~~~~~~~---~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~  265 (428)
T PF13347_consen  194 TFFFVKERSV-EVT----EQEKKISLRDSLRSL---FRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIF  265 (428)
T ss_pred             hhheeeeccc-ccc----ccccccccccchhhh---cccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHH
Confidence            3333232111 100    112233444444433   34454433333333222211100   00111111111 234455


Q ss_pred             HHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHH
Q 012075          278 NVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLY  357 (471)
Q Consensus       278 ~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (471)
                      .....++.+++.++.+++.||  +|||+....+..+........+.     .   +         +    .+.+..++..
T Consensus       266 ~~~~~~~~~v~~~~~~~l~~r--~gk~~~~~~~~~~~~~~~~~~~~-----~---~---------~----~~~~~~~i~~  322 (428)
T PF13347_consen  266 MLIFFVASIVGSPLWGRLSKR--FGKKKVYIIGLLLAALGFLLLFF-----L---G---------P----GSPWLVLILF  322 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--ccceeehhhhHHHHHHHHHHHHH-----H---H---------h----hhHHHHHHHH
Confidence            556788889999999999999  89999887776655322222211     1   0         0    1223456777


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhcC------CchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          358 FCYGLLDAMFQSMVYWVIGALAD------DSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       358 ~~~g~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ++.|++.+..+...+++++|..+      ..|+.+..+|+..+.+.++.+++-.+.
T Consensus       323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence            78888888888888888887662      124457788888888877777776543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=2.8e-10  Score=111.87  Aligned_cols=274  Identities=14%  Similarity=0.147  Sum_probs=152.0

Q ss_pred             ccccccchhHHHHHHHHHHhhhhhh---hHhhhhcCCCCCCChhhhhHHHHHHHHH-HHhhhchhhhhhhccchhHHHHH
Q 012075           18 SRFRYNSPLVQVCLIGLVCFCCPGM---FNALSGMGGGGQVDTTAANNANTALYTT-FTIFGILGGGIYNILGPQVTLIS   93 (471)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~g~l~d~~Grk~~l~i   93 (471)
                      ..+-|+++|..++..++..+....-   |..+++..+....+. .....++.+|.. ....++.+-|+.|++|-|.++++
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~-~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSS-SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            4567889999888888877655321   223332222111111 122344555544 33456888999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh-cc----cchH--HHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhh
Q 012075           94 ACSTYVLYAGSFLYYN-HH----KHQA--FAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIG  166 (471)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~----~~~~--~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG  166 (471)
                      ++..-++.  +.+-.. ..    +..+  ....+-.+.+.+..+.....+-+.+.++++++|..+..+-.+.+.+|..+|
T Consensus       115 gt~ln~iG--a~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg  192 (480)
T KOG2563|consen  115 GTVLNGIG--AWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVG  192 (480)
T ss_pred             HHHHHHHH--HHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHH
Confidence            99987763  322211 11    2334  556677777776666555555566677899999999999988888999998


Q ss_pred             hHHHHHhhccCCCccccccchhHHHH---HHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhH
Q 012075          167 GLIPFILNYNRNEAVSVNDGTYIGFM---CFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKM  243 (471)
Q Consensus       167 ~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (471)
                      .+++-.+..+.++.....|.....+.   ++..+.+.+..+.+++++.......+ ..+.+.++.   +++.+.++++++
T Consensus       193 ~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~-~~~~~~~f~---~si~~~~~n~~F  268 (480)
T KOG2563|consen  193 FLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQ-AALQDASFP---KSIKSCFKNRQF  268 (480)
T ss_pred             hhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH-hhhhcCcHH---HHHHHHHcCccH
Confidence            88864333222122233344332222   22222222223333221110000000 001122343   445566777776


Q ss_pred             HHHHHHHHH-hHhHhhhc--cc-cccccccccchhhhHHHHHHHHHHHHhhhhhhhccc
Q 012075          244 LLIFPASWA-SNFFYSYQ--FN-NVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDF  298 (471)
Q Consensus       244 ll~~~~~~~-~~~~~s~~--~~-~~~~~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~  298 (471)
                      .++...... .+.+++..  +. .+...+++-...|.......++.++++++.|.+.||
T Consensus       269 ~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk  327 (480)
T KOG2563|consen  269 IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADK  327 (480)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhh
Confidence            555433222 23333322  11 111123332456777777788899999999999999

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.23  E-value=3.4e-09  Score=103.80  Aligned_cols=311  Identities=11%  Similarity=0.064  Sum_probs=169.0

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHH-KHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~-~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      .++.++--+..++-+++-|.++|+.|+|+-.+-......+...+.+..... .+.+..++.-++..++.....+...+.+
T Consensus        61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L  140 (438)
T COG2270          61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSML  140 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHh
Confidence            344444445556667889999999997766555444333322222222212 2345567777888888888888889999


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCcc-------------ccccchhHHHHHHHHHHHHHHHhcc
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAV-------------SVNDGTYIGFMCFMSAGALLSLVIL  206 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~l~  206 (471)
                      .+..++++-||..++-|..-.+|+++--++..+.....++++             ...+..+.+..+...+..+-++...
T Consensus       141 ~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v  220 (438)
T COG2270         141 PRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNV  220 (438)
T ss_pred             hhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcc
Confidence            999999999999999888888888876666533222111100             0111111111111111111111111


Q ss_pred             CCCccccCCCCccccccCCCHHHHHHH---HHHHhc-chhHH-HHHHHHHHh-Hh----Hhhhccccccccccccchhhh
Q 012075          207 PPGRVIRDDGTHCTNIKYSNVSTEITQ---VLKLFS-NWKML-LIFPASWAS-NF----FYSYQFNNVNGLQFNLRTRGL  276 (471)
Q Consensus       207 ~p~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~l-l~~~~~~~~-~~----~~s~~~~~~~~~~~~~~~~~l  276 (471)
                       ++..+-++      +.++..++.+|+   .++..+ ++.+. .+.--+++. +.    ..+..|.. ...+++..+..+
T Consensus       221 -~~~~~~~~------~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~-~~~gls~~~lll  292 (438)
T COG2270         221 -HDAEKISS------PPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGA-ADLGLSSTELLL  292 (438)
T ss_pred             -cccccccc------cchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHH-HHcCccHHHHHH
Confidence             11110000      111122222222   223322 23222 222222222 22    11111110 012334444556


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHH
Q 012075          277 NNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVL  356 (471)
Q Consensus       277 ~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (471)
                      ..+...+.+++|+++.|++.||  +|-|++...+.+.....  .++    ...   .        . .+  .   ..+.+
T Consensus       293 ~g~~~~vvA~lg~ii~g~Ld~r--fg~k~vl~~~lvi~~~~--~~~----~~~---~--------~-~~--~---~f~i~  347 (438)
T COG2270         293 IGIALSVVAALGAIIAGFLDER--FGSKPVLMIGLVILSIA--ALY----LIF---L--------E-GE--L---DFWIL  347 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--hCCceeehHHHHHHHHH--HHH----HHH---c--------c-cc--H---HHHHH
Confidence            6778899999999999999998  77777777765544211  111    111   1        0 01  1   23556


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhh
Q 012075          357 YFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQ  405 (471)
Q Consensus       357 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~  405 (471)
                      .++.|++.+..|...-++..++.++.+ -++.+|+|+...-.++..+-+
T Consensus       348 gll~g~s~G~~qA~SRSy~~~lvp~~k-~~~fFglyaltgra~S~~gp~  395 (438)
T COG2270         348 GLLVGTSLGGAQASSRSYLARLVPKGK-EGRFFGLYALTGRAASFLGPF  395 (438)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhCCCcc-ccceeehhhhhhhHHHHHHHH
Confidence            678899999999999999999995443 489999999886555555544

>PRK09848 glucuronide transporter; Provisional

Probab=99.20  E-value=3.4e-09  Score=109.17  Aligned_cols=312  Identities=10%  Similarity=0.052  Sum_probs=154.5

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhcc----chhHHH-HHHHHHHHHHHHHHHh-h-hcccc--hHHHHHHHHHHhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNIL----GPQVTL-ISACSTYVLYAGSFLY-Y-NHHKH--QAFAIAAGAILGI  126 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----Grk~~l-~i~~~~~~~~~~~~~~-~-~~~~~--~~~li~~r~l~G~  126 (471)
                      ++...+......-...++..++.|.++||.    |||+.. +++.+...+....... . ...++  .+..++.-++.++
T Consensus        42 ~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (448)
T PRK09848         42 GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL  121 (448)
T ss_pred             CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH
Confidence            355556666666777788899999999996    776655 5555433321111111 1 01111  2234555667788


Q ss_pred             hhhHHHhhhhhhhccCC-CCCchhhHHHHHHHH-----HHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHH
Q 012075          127 GAGLLWAAEGAIMTSYP-PPNRKGTYISIFWSI-----FNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGAL  200 (471)
Q Consensus       127 g~g~~~~~~~~~i~~~~-~~~~RG~~~g~~~~~-----~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  200 (471)
                      +.+...+...+...|+. ++++|.+..++-...     ..++..++|++..... .   .....+..+.  .++.+++.+
T Consensus       122 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g-~---~~~~~~~~~~--~~~~v~~~~  195 (448)
T PRK09848        122 CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP-E---EMVSVYHFWT--IVLAIAGMV  195 (448)
T ss_pred             HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C---chhhhHHHHH--HHHHHHHHH
Confidence            88877665555556655 457899887765433     2344455555542110 0   0000111111  122222222


Q ss_pred             HHH--hccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhccccccccccccc-h-
Q 012075          201 LSL--VILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGLQFNLR-T-  273 (471)
Q Consensus       201 ~~~--~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~~~~~~-~-  273 (471)
                      +.+  +...||+.+++       .++++.++.+++   .+++|+++......+....   ......+.+..+.++.. . 
T Consensus       196 ~~~~~~~~~~e~~~~~-------~~~~~~~~~~~~---l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  265 (448)
T PRK09848        196 LYFICFKSTRENVVRI-------VAQPSLKISLQT---LKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF  265 (448)
T ss_pred             HHHHHHcCcEeccCCC-------ccCCCHHHHHHH---HhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH
Confidence            211  11112211111       112234443333   3566665544332222211   11111122222222221 1 


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhH
Q 012075          274 RGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGP  353 (471)
Q Consensus       274 ~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (471)
                      .++......++.+++.++.+++.||  +|+|+...+|..+. .++....    .+   .+        +     .+.+..
T Consensus       266 ~~~~~~~~~~~~~~~~~l~~~l~~r--~g~~~~~~~g~~~~-~i~~~~~----~~---~~--------~-----~~~~~~  322 (448)
T PRK09848        266 TVLVLVQNLVGTVASAPLVPGMVAR--IGKKNTFLIGALLG-TCGYLLF----FW---VS--------V-----WSLPVA  322 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHH-HHHHHHH----HH---cC--------c-----hhHHHH
Confidence            2222333356677888889999998  78888777665443 1221111    10   01        1     122223


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcC-C-----chhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          354 FVLYFCYGLLDAMFQSMVYWVIGALAD-D-----SETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~~~~i~~~~~-~-----~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                      .+..++.+++.+...+..+++..+..+ +     .|+.+...|++++.+.+|.+++-.+
T Consensus       323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i  381 (448)
T PRK09848        323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI  381 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            444556777777777777777666542 1     2344788899999888888886443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.20  E-value=3.5e-08  Score=96.95  Aligned_cols=317  Identities=13%  Similarity=0.077  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHhhhchhhhhhhccc-----hhHHHHHHHHHHHHHH---HH--HHhhhc-----ccch--H--HHHHHHHH
Q 012075           63 ANTALYTTFTIFGILGGGIYNILG-----PQVTLISACSTYVLYA---GS--FLYYNH-----HKHQ--A--FAIAAGAI  123 (471)
Q Consensus        63 ~~~~~~~~~~i~~~~~g~l~d~~G-----rk~~l~i~~~~~~~~~---~~--~~~~~~-----~~~~--~--~li~~r~l  123 (471)
                      ..++-|. .+.....+|..+|+.+     ||..+++.........   ..  .+....     .++.  +  ....+=.+
T Consensus        20 lval~~~-~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l   98 (403)
T PF03209_consen   20 LVALHYL-VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLL   98 (403)
T ss_pred             HHHHHHH-HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHH
Confidence            3444444 3556788999999999     9988887764332111   11  111111     0022  2  23445567


Q ss_pred             HhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHH
Q 012075          124 LGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSL  203 (471)
Q Consensus       124 ~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  203 (471)
                      .|+|.+...++--+.++|.+|||+|++..++.|.+..+|.+++.++...+....++ ........... ++.....+++.
T Consensus        99 ~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~-~rL~~v~~~~a-~i~~~l~~ia~  176 (403)
T PF03209_consen   99 YGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP-ERLIQVIQGVA-LIALLLNLIAL  176 (403)
T ss_pred             HHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH-HHHHHHHHHHH-HHHHHHHHHHH
Confidence            78888888888889999999999999999999999999999998886433322210 10000111111 11111112233


Q ss_pred             hccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhcccccccccc--ccchhhhHHHHH
Q 012075          204 VILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQFNNVNGLQF--NLRTRGLNNVFY  281 (471)
Q Consensus       204 ~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~l~~~~~  281 (471)
                      +-.+||..++.   +...++++++++.+++.+..-..+|++....+.......+-..+..|-...|  +..+....+...
T Consensus       177 wg~E~r~~~~~---~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~  253 (403)
T PF03209_consen  177 WGQEPRRSRRA---AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFW  253 (403)
T ss_pred             HhcccCCcccc---cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHH
Confidence            33333332222   1112345567777776654333334332222211111111111222322233  333445556678


Q ss_pred             HHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHH
Q 012075          282 WGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYG  361 (471)
Q Consensus       282 ~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (471)
                      +.+.++|-...|++..| +.++++...+|..+...+ +...+    ...            +.+   +.+..-...+++|
T Consensus       254 ~~G~L~G~~~~g~~l~~-~~~~~~~a~~G~~~~~~~-f~lii----~a~------------~~~---~~~~~~~~~~l~G  312 (403)
T PF03209_consen  254 GGGTLLGMLLAGFLLSR-RLGKKRTAALGCLLGALA-FALII----LAG------------PLG---SPWLFRPGVFLLG  312 (403)
T ss_pred             HHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH-HHHHH----HHH------------hcc---cchHHHHHHHHHH
Confidence            88999999899998775 366666555665444222 11111    111            011   1122344556678


Q ss_pred             hhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          362 LLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       362 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ++.+.+..-.-...=++. .+++.+..+|..-..|+++..++-+.+
T Consensus       313 ~g~G~f~vgals~mM~lt-~~~~aG~~mG~WGaaQA~A~Glg~~~G  357 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLT-SAGRAGLFMGAWGAAQAIARGLGTFLG  357 (403)
T ss_pred             HhhhHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            887777654433444444 345568889999999988888887765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.19  E-value=9.7e-09  Score=103.47  Aligned_cols=321  Identities=11%  Similarity=0.040  Sum_probs=169.4

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhc----cchhH-HHHHHHHHHHHHHHHHHhhh-cc--cchHHHHHHHHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNI----LGPQV-TLISACSTYVLYAGSFLYYN-HH--KHQAFAIAAGAILGIGA  128 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grk~-~l~i~~~~~~~~~~~~~~~~-~~--~~~~~li~~r~l~G~g~  128 (471)
                      +...+....+.=..-++.-++.|.++||    +||++ =++.+.+.+.+.....+..- .+  .+....++--++.+++-
T Consensus        47 ~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~Y  126 (467)
T COG2211          47 AALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGY  126 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHH
Confidence            4444333334444556777899999995    78644 45666677766444433311 11  23445677788888888


Q ss_pred             hHHHhhhhhhhccCC-CCCchhhHHHHHHHHHHhhhhhhhHHHH-HhhccCCCccccccc-hhHHHHHHHHHHHHHHHhc
Q 012075          129 GLLWAAEGAIMTSYP-PPNRKGTYISIFWSIFNMGGVIGGLIPF-ILNYNRNEAVSVNDG-TYIGFMCFMSAGALLSLVI  205 (471)
Q Consensus       129 g~~~~~~~~~i~~~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l  205 (471)
                      +.....-.+...|+. +|+||.+..++-+.+.++|..+-..+.. ......+++....+. ..+++.++.++..+.+++-
T Consensus       127 T~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~  206 (467)
T COG2211         127 TLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFN  206 (467)
T ss_pred             HheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777777777876 4899999999998888888655444321 111111111111111 1123333333333333433


Q ss_pred             cCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHh--Hh-Hhhhccccccccccccc--hhhhHHHH
Q 012075          206 LPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWAS--NF-FYSYQFNNVNGLQFNLR--TRGLNNVF  280 (471)
Q Consensus       206 ~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~-~~s~~~~~~~~~~~~~~--~~~l~~~~  280 (471)
                      .+||..++..++   ...+++.++.+..   .+++|.+++...+.++.  +. ..+..+..+..+..+..  ...+....
T Consensus       207 v~ER~~~~~~~~---~~~~~~~~~~~~~---~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~  280 (467)
T COG2211         207 VKERVVETQPTK---TGVKLKLKDSFLL---IFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLA  280 (467)
T ss_pred             hhcccCccccCc---ccccccHHHHHHH---HHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHH
Confidence            333322111000   0112233322222   23444333333322222  21 11111111122222221  23455566


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHH
Q 012075          281 YWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCY  360 (471)
Q Consensus       281 ~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (471)
                      ..++.+++.++..++.+|  +|||+...++.++..+...+.+    .    .+           .  .+....++..++.
T Consensus       281 ~~~~~l~~~~~~p~L~~~--~gkk~~~~~~~~~~~i~~~~~~----f----~~-----------~--~~~~l~~~~~~i~  337 (467)
T COG2211         281 SGAGLLIGLILWPRLVKK--FGKKKLFLIGLLLLAVGYLLLY----F----TP-----------A--GSVVLIVVALIIA  337 (467)
T ss_pred             HHHHHHHHHHhHHHHHHH--hchHHHHHHHHHHHHHHHHHHH----h----hc-----------C--cchHHHHHHHHHH
Confidence            777778878888899998  8999988777544322211111    1    11           1  2333455555677


Q ss_pred             HhhHHHHHHHHHHHHHHh------cCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          361 GLLDAMFQSMVYWVIGAL------ADDSETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       361 g~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                      +++.+..++..|+++++.      .+..|+-+..++...+++=+|.+++-++
T Consensus       338 ~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         338 GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            788888888888876543      3445555777788888876666666543

>PRK11462 putative transporter; Provisional

Probab=99.19  E-value=1.1e-08  Score=105.78  Aligned_cols=115  Identities=9%  Similarity=-0.022  Sum_probs=76.7

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhc----cchhHHHH-HHHHHHHHHHHHHHhhh-cccc--hHHHHHHHHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNI----LGPQVTLI-SACSTYVLYAGSFLYYN-HHKH--QAFAIAAGAILGIG  127 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grk~~l~-i~~~~~~~~~~~~~~~~-~~~~--~~~li~~r~l~G~g  127 (471)
                      ++...+....+.-..-++..++.|.++||    +|||+..+ ++.+.+.+.....+... .+++  ...+++.-++..++
T Consensus        43 ~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~  122 (460)
T PRK11462         43 PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLL  122 (460)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence            35444444444455567788999999995    79876655 45555554332222211 1111  23456666777788


Q ss_pred             hhHHHhhhhhhhccCCC-CCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          128 AGLLWAAEGAIMTSYPP-PNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       128 ~g~~~~~~~~~i~~~~~-~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .....+.-.+...|+++ +|+|.+.+++.....++|..+++.+.
T Consensus       123 ~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        123 YTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777778888876 89999999999988888887777664

>TIGR01272 gluP glucose/galactose transporter

Probab=99.17  E-value=2.2e-09  Score=104.83  Aligned_cols=233  Identities=12%  Similarity=0.114  Sum_probs=134.0

Q ss_pred             ccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCc----------
Q 012075          111 HKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA----------  180 (471)
Q Consensus       111 ~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~----------  180 (471)
                      ..+++.++++-++.|.|.+...++...|++++.+++++.+.+++.+.++.+|.++||++...+......+          
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~   86 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA   86 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence            3578899999999999999999999999999999999999999999999999999999975444221000          


Q ss_pred             --cccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHH-HHHHHhHh--
Q 012075          181 --VSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIF-PASWASNF--  255 (471)
Q Consensus       181 --~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~--  255 (471)
                        ..|++ .|++..++..+..+...+...|+.. ++|+++..  +++..  +.+   +.+++|+.++.. .++++.+.  
T Consensus        87 ~~~~~~~-~yl~ia~~~~~~~i~~~~~~~p~~~-~~~~~~~~--~~~~~--~~~---~~~~~~~~~l~~~~~f~yvg~e~  157 (310)
T TIGR01272        87 EAAKVHT-PYLLLAGALAVLAIIFAFLPLPELQ-EADVARVS--SGDTT--QKT---SAFQFTHLVLGALGIFVYVGAEV  157 (310)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHccCCCCC-cccccccc--ccccc--chh---hHHhhHHHHHHHHHHHHHHHHHH
Confidence              11222 2333333333333333333334321 11111100  01100  011   223445544432 23334332  


Q ss_pred             -Hhhhccccccc----cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhc
Q 012075          256 -FYSYQFNNVNG----LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQL  330 (471)
Q Consensus       256 -~~s~~~~~~~~----~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~  330 (471)
                       ..++. +++..    .+++.++.++....+..+.++|+++.+++.||  +|+|+...++..... +....    .. . 
T Consensus       158 ~~~~w~-~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r--~g~~~~l~~~~~l~~-~~~~l----~~-~-  227 (310)
T TIGR01272       158 SAGSFL-VNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM--ISQGRYLAFNAFLAV-LLSIG----AA-L-  227 (310)
T ss_pred             HHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHH-HHHHH----HH-H-
Confidence             11222 33332    12344455666777888999999999999999  787776655543331 11111    10 0 


Q ss_pred             ccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhc
Q 012075          331 NYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALA  379 (471)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  379 (471)
                        .        +      +.. .....++.|++.+...|.......+..
T Consensus       228 --~--------~------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~  259 (310)
T TIGR01272       228 --T--------H------GYV-AMWFVLALGLFNSIMFPTIFSLALNAL  259 (310)
T ss_pred             --c--------C------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              0        0      111 223445678888888888777776766

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.16  E-value=4e-09  Score=106.51  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=103.2

Q ss_pred             cccccchhHHHHHHHHHHhhhhh--------hhHhhhhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccch-hH
Q 012075           19 RFRYNSPLVQVCLIGLVCFCCPG--------MFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGP-QV   89 (471)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~f~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-k~   89 (471)
                      ....+.+|..+.+..+..|+...        ++.+++.+.-+  .+.+.-+...+..-++.+++++..|..+.|.|. |+
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~--A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~  103 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPT--ATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK  103 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCC--CCcchhhHHHHHHHHHHHhcchhhcccccccCCccc
Confidence            33445555556666666655442        22333432221  223344556666677778888999999999996 77


Q ss_pred             HHHHHHHHHHHHHHHHHhhhc-cc-chHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhh
Q 012075           90 TLISACSTYVLYAGSFLYYNH-HK-HQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGG  167 (471)
Q Consensus        90 ~l~i~~~~~~~~~~~~~~~~~-~~-~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~  167 (471)
                      .++.|.++..+....++..+. .+ ..+.++++|++.|+|.|... .-=.|+++.+.+++|-|+++.......+|.++||
T Consensus       104 Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp  182 (488)
T KOG2325|consen  104 PLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGP  182 (488)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence            788888766553322212222 23 57899999999999988754 4567899999999999999999888888888888


Q ss_pred             HHHHHh
Q 012075          168 LIPFIL  173 (471)
Q Consensus       168 ~i~~~~  173 (471)
                      .+...+
T Consensus       183 ~~q~~f  188 (488)
T KOG2325|consen  183 TIQLAF  188 (488)
T ss_pred             HHHHHH
Confidence            886433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.10  E-value=1.2e-07  Score=97.59  Aligned_cols=116  Identities=18%  Similarity=0.209  Sum_probs=82.0

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhcc-chhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNIL-GPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      ++.......+.......++++++|+++||+ |||++++++.+...+.......  ...+...++++-.+.++|.|...+.
T Consensus        43 s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~--~~~~~~~~~l~l~li~iG~G~~~~~  120 (493)
T PRK15462         43 DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA--SEIHPSFLYLSLAIIVCGYGLFKSN  120 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHhccccccc
Confidence            344444445555566677889999999999 9999999999877653222111  0122233444544555666666666


Q ss_pred             hhhhhccCCCCC--chhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          135 EGAIMTSYPPPN--RKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       135 ~~~~i~~~~~~~--~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ..++++|..|++  +|++.+++++...++|..++|.+...+
T Consensus       121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462        121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            678899998875  799999999999999999999997433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.09  E-value=1.7e-09  Score=91.50  Aligned_cols=102  Identities=21%  Similarity=0.334  Sum_probs=85.2

Q ss_pred             HHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCch
Q 012075           69 TTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRK  148 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~R  148 (471)
                      .+..+++++.+++.||+|||+.+..+.....+.....   ...++.+.+++.+++.|++.+...+....++.|..|+++|
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF---ALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            3345677889999999999999998887665433222   2247888899999999999999988899999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          149 GTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       149 G~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ++.+++.+....+|..+|+.+...+
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~  110 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVL  110 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHH
Confidence            9999999999999999999887433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.02  E-value=3.7e-07  Score=92.18  Aligned_cols=315  Identities=14%  Similarity=0.013  Sum_probs=151.8

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccc-hhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILG-PQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-rk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      ++...+...++......++++++|.++||.+ +|+.+.+..++-.+.....   ...++.+.+++.-++..+......+.
T Consensus        35 s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~---~~~~~f~~~~~~~~l~~~~~~p~~pl  111 (400)
T PF03825_consen   35 SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL---AFSSSFWWLFVIMLLFSFFFSPTMPL  111 (400)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHccHHHH
Confidence            4555566677777777788899999999987 5666666555433311111   22466777777777766665555555


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ..++..+...  ++++-.|-.-..-++|-+++.+..........+.....+..+ +......+.....+ ..|..+.+|+
T Consensus       112 ~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ll~~~~l-~lp~~~~~~~  187 (400)
T PF03825_consen  112 SDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY-IAAILSLLLAGFAL-FLPKTPPKRS  187 (400)
T ss_pred             HHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH-HHHHHHHHHHHHHH-hCCCCccccc
Confidence            5555544433  222222333333344554443321011110000011111222 22222222211222 2332221111


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhH----hHhhhcccccccc-c-cccchhhhHHHHHHHHHHHH
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASN----FFYSYQFNNVNGL-Q-FNLRTRGLNNVFYWGAQMLG  288 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~~s~~~~~~~~~-~-~~~~~~~l~~~~~~i~~i~g  288 (471)
                      ++++    .++   +..++.++.+++|+++......+..+    .+|++. +.+... + ++....+.......+.+++.
T Consensus       188 ~~~~----~~~---~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~-~~yl~~~gg~~~~~~g~~~~l~~~aEi~~  259 (400)
T PF03825_consen  188 AKES----VKK---LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFF-SIYLQELGGYSGSTIGILWALGVVAEIPF  259 (400)
T ss_pred             cCCC----ccc---ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccchhhHHHHHHHHHHHHHHHH
Confidence            1110    011   11234456788887765444433333    233333 233221 1 22223343333455677777


Q ss_pred             hhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhH---HHHHHHHHhhHH
Q 012075          289 SVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGP---FVLYFCYGLLDA  365 (471)
Q Consensus       289 ~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~  365 (471)
                      -...+++..|  +|-|+.++++.+...    +=|. .+..   ..           +  +.+...   .+...+.|...+
T Consensus       260 f~~~~~~~~r--~g~~~ll~~a~~~~~----vR~~-l~a~---~~-----------~--~~~~~~~~~~l~q~lhG~tf~  316 (400)
T PF03825_consen  260 FFFSGRFLKR--FGIKWLLLLALVAYA----VRWL-LYAY---FS-----------D--PWPFIVALQLLGQLLHGLTFG  316 (400)
T ss_pred             HHHHHHHHHh--cCHHHHHHHHHHHHH----HHHH-HHHH---hc-----------C--CcHHHHHHHHHHHhhhhHHHH
Confidence            7777888777  677775555433221    1111 1110   10           1  111111   122345788877


Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHHHHHHH-HHHHHHHhhhccc
Q 012075          366 MFQSMVYWVIGALADDSETLSRYSGFYKGVQ-SAGAAVAWQVDTH  409 (471)
Q Consensus       366 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-s~g~~i~~~~~~~  409 (471)
                      ........++.+..++ +.++++.+++.... .+|.+++..++..
T Consensus       317 ~~~~a~~~yi~~~~p~-~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  317 LFHAASVRYIDRIAPP-ELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             HHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            7777777788888843 34478888888764 6777777766643

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.01  E-value=1.9e-07  Score=90.34  Aligned_cols=217  Identities=18%  Similarity=0.184  Sum_probs=114.8

Q ss_pred             HHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh-hhhhhccCCC
Q 012075           66 ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA-EGAIMTSYPP  144 (471)
Q Consensus        66 ~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~-~~~~i~~~~~  144 (471)
                      .-+....+...+.|.++||+|||+..++-++.|.+   +++. -..++++.++++|++.|++.+.+..+ +.=++.|.-.
T Consensus        77 ~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~---scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~  152 (354)
T PF05631_consen   77 AGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL---SCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNK  152 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---HHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444556667899999999999999999988865   3343 33688999999999999999998765 4445566521


Q ss_pred             CCc-hhhHHHHHHHHH----HhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCcc
Q 012075          145 PNR-KGTYISIFWSIF----NMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHC  219 (471)
Q Consensus       145 ~~~-RG~~~g~~~~~~----~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~~  219 (471)
                      ... +......|+.+.    .+-.+++++++.......   +..+-..|...+.+.+++.++.....++. ..  |.   
T Consensus       153 ~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~---~~g~vaPF~~a~~~l~~~~~~I~~~W~EN-yg--~~---  223 (354)
T PF05631_consen  153 RGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF---GFGPVAPFDAAIVLLAVAAVLILKTWPEN-YG--DT---  223 (354)
T ss_pred             cCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHHHHhccccc-CC--Cc---
Confidence            111 112223333222    112233333432221111   11122234333333333333322222221 11  10   


Q ss_pred             ccccCCCHHHHHHHHHHHh-cchhHHHHHHHHHHh-HhHhhhcc---ccccccccccchhhhHHHHHHHHHHHHhhhhhh
Q 012075          220 TNIKYSNVSTEITQVLKLF-SNWKMLLIFPASWAS-NFFYSYQF---NNVNGLQFNLRTRGLNNVFYWGAQMLGSVGIGY  294 (471)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~-~~~~s~~~---~~~~~~~~~~~~~~l~~~~~~i~~i~g~~~~g~  294 (471)
                        .++.+..+.+++.++.+ .|||++++..+.... +-+|.+.+   |...... ..-.-|+++..+.+..++|+.+..+
T Consensus       224 --~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~-~~~P~GlIFssFM~a~MlGS~lf~~  300 (354)
T PF05631_consen  224 --SSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDD-EELPLGLIFSSFMVAMMLGSSLFSR  300 (354)
T ss_pred             --ccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCC-CCCCchHHHHHHHHHHHHHHHHHHH
Confidence              01223344445444444 578988777655443 22333332   2222110 0112467777888999999988876


Q ss_pred             hccc
Q 012075          295 IFDF  298 (471)
Q Consensus       295 l~D~  298 (471)
                      +..+
T Consensus       301 l~s~  304 (354)
T PF05631_consen  301 LLSK  304 (354)
T ss_pred             HHhC
Confidence            6544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.99  E-value=3.7e-08  Score=100.70  Aligned_cols=362  Identities=12%  Similarity=0.090  Sum_probs=176.4

Q ss_pred             hchhhhhhhcc-----chhHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCC--CCC
Q 012075           75 GILGGGIYNIL-----GPQVTLISACSTYVLYAGSFLYY-NHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYP--PPN  146 (471)
Q Consensus        75 ~~~~g~l~d~~-----Grk~~l~i~~~~~~~~~~~~~~~-~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~--~~~  146 (471)
                      .++.|.++|.+     .||+=++++.++-.+........ +...+.....+.-++.-+|.+..-++.-+.+.|..  +|+
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            47899999986     35555666665543322222211 11234556666777888888888888888888887  355


Q ss_pred             chhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCCCc-ccccc--
Q 012075          147 RKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTH-CTNIK--  223 (471)
Q Consensus       147 ~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~~~-~~~~~--  223 (471)
                      .||...+..+....+|.++|..++......    .+.++ .+.+...+..+..+..+++.++++.+++++.. ...++  
T Consensus       121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~----~~~~~-~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  195 (433)
T PF03092_consen  121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLDS----FGPQG-VFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVP  195 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhc----CCCeE-EehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccc
Confidence            699999999999999999998886333221    12233 34444445555544555555543222111110 00010  


Q ss_pred             --CCCHHHHHHHHHHHhcchhHHHHHH-HHHHhHhHhhhccc-c--cc-----ccccccchhhhHHHHHHHHHHHHhhhh
Q 012075          224 --YSNVSTEITQVLKLFSNWKMLLIFP-ASWASNFFYSYQFN-N--VN-----GLQFNLRTRGLNNVFYWGAQMLGSVGI  292 (471)
Q Consensus       224 --~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~~s~~~~-~--~~-----~~~~~~~~~~l~~~~~~i~~i~g~~~~  292 (471)
                        ....++..++.++.+++|.++-... ..+.........-. .  +.     ..+|+....+...++..++.++|..+.
T Consensus       196 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y  275 (433)
T PF03092_consen  196 CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLY  275 (433)
T ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence              1114566777777777766543332 12211111110000 0  00     112333334444566677777777766


Q ss_pred             hhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHH
Q 012075          293 GYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVY  372 (471)
Q Consensus       293 g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  372 (471)
                      .++..+  +.-|+...+..++.    ......-..+...++.     ..+..+  .-+  .+.-.++..+....-.-+..
T Consensus       276 ~~~~~~--~~~R~~~~~t~~~~----~~~~l~~~~lv~~~n~-----~~Gi~d--~~f--~lgd~~l~~~~~~i~~mP~l  340 (433)
T PF03092_consen  276 RKYFSN--WSWRRIFVVTTLVS----VLASLFDLLLVTRWNL-----DLGIPD--QWF--ALGDTILEEVIGMIAFMPSL  340 (433)
T ss_pred             HHHHhC--CCHHHHHHHHHHHH----HHHhcccEEEEEEEee-----eeCcCC--eEE--EEEhHHHHHHHHHHHHHHHH
Confidence            654433  23333332222211    1110000000111110     000011  111  11122222333222222334


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhH----HH-HHHHHHHHh--hhhhhhheeeeeeccCCCc
Q 012075          373 WVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLS----QL-VVNWSLTTI--SYPLLVILVLLAVKDEKSP  445 (471)
Q Consensus       373 ~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~----~~-~~~~~~~~~--~~~~~i~~~~~~~pet~~~  445 (471)
                      .++.++.++-.| ++.+++...+.++|..++-.++.....+.+    .+ .+.+.+.+.  ..++.++++ ..+||.++.
T Consensus       341 vl~a~lcP~G~E-gt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll-~lLp~~~~~  418 (433)
T PF03092_consen  341 VLAARLCPKGSE-GTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL-FLLPPQKRI  418 (433)
T ss_pred             HHHHHHCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH-HHcCCCchh
Confidence            467888854444 889999999999999988877643211100    11 133333332  224445544 345666555


Q ss_pred             cCccccccCcCCC
Q 012075          446 EESTNSKEVTLPA  458 (471)
Q Consensus       446 ~~~~~~~~~~~~~  458 (471)
                      .|++..+++..|+
T Consensus       419 ~~~~~~~~~~~~~  431 (433)
T PF03092_consen  419 TDELDADGKASKK  431 (433)
T ss_pred             hHHHhhcCCcccC
Confidence            5555444444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.96  E-value=2.7e-08  Score=103.69  Aligned_cols=108  Identities=8%  Similarity=0.021  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhcc
Q 012075           62 NANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTS  141 (471)
Q Consensus        62 ~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~  141 (471)
                      ........+..++++++|+++||+|||+.++++.+...+.....+....+++...++++|++.|++.+..+.....++.|
T Consensus       290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~  369 (490)
T PRK10642        290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPA  369 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566778899999999999999988876543322221111123567778889999998887777777788889


Q ss_pred             CCCCCchhhHHHH-HHHHHHhhhhhhhHHH
Q 012075          142 YPPPNRKGTYISI-FWSIFNMGGVIGGLIP  170 (471)
Q Consensus       142 ~~~~~~RG~~~g~-~~~~~~~G~~iG~~i~  170 (471)
                      ++|++.||+.+|+ ++... .+..++|.+.
T Consensus       370 ~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~  398 (490)
T PRK10642        370 MFPTHIRYSALAAAFNISV-LVAGLTPTLA  398 (490)
T ss_pred             HCCCccchHHHHHHHHHHH-HHHHHHHHHH
Confidence            9999999999997 44444 4445555553

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.94  E-value=1.2e-07  Score=91.23  Aligned_cols=288  Identities=13%  Similarity=0.115  Sum_probs=168.8

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .+....+..+++-..++++.+++.+++.+|+|.++.+..+.++.++  +..+-.  ..+.+.++.+-.+.|.|.+...+.
T Consensus        44 ls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~--G~~iR~--~~~~~~L~~gt~l~G~gIav~nVL  119 (395)
T COG2807          44 LSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAA--GILIRS--LGGLPLLFLGTLLAGAGIAVINVL  119 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHH--HHHHHh--cccHHHHHHHHHHHHhhHHHHHHh
Confidence            3455566667777888999999999999999999999999986554  333321  246788999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      -|..+-+. .||+-|..+|+|......|..+++.+.--+..+.   .+|+....+ ......+.   .+...| ... |+
T Consensus       120 LPslIK~~-Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~---~gW~~aL~~-WAl~allA---l~~WlP-q~~-r~  189 (395)
T COG2807         120 LPSLIKRD-FPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS---GGWRGALGF-WALLALLA---LLIWLP-QAL-RE  189 (395)
T ss_pred             hhHHHHhh-cccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh---ccHHHHHHH-HHHHHHHH---HHHHhh-hcc-cc
Confidence            99999887 4678899999999999999999887763332221   234433211 11122222   222223 211 11


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh-Hhhh--cccccc-ccccccchhhhHHHHHHHHHHHHhh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF-FYSY--QFNNVN-GLQFNLRTRGLNNVFYWGAQMLGSV  290 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~s~--~~~~~~-~~~~~~~~~~l~~~~~~i~~i~g~~  290 (471)
                      ....   .+.+.     ++..+.+++|..+.+...+-.+.. +|+.  .++.+. +.+++..+.+.......+.++..++
T Consensus       190 ~~~~---~~~~~-----~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~l  261 (395)
T COG2807         190 QAAS---IATKL-----VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTAL  261 (395)
T ss_pred             cccc---ccccc-----ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHH
Confidence            1000   00000     111123456655555443333332 2221  124443 4566666666555566777778777


Q ss_pred             hhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHH
Q 012075          291 GIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSM  370 (471)
Q Consensus       291 ~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  370 (471)
                      ....+.+|. -.||+........+ .++.+  +  +.+   .+          .+   .   +..-.++.|++.+...+.
T Consensus       262 l~P~la~R~-~n~r~~~~~~~~~~-l~G~~--G--~~~---~P----------~~---~---~~lw~~llG~G~G~~F~l  316 (395)
T COG2807         262 LIPLLARRS-KNQRPLVVLALLLM-LVGLV--G--LLL---AP----------GQ---L---PILWALLLGLGQGGAFPL  316 (395)
T ss_pred             HHHHHHHHh-cccchHHHHHHHHH-HHHHH--H--HHH---hh----------hh---H---HHHHHHHHhCccchHHHH
Confidence            777777763 35666443322222 11111  1  111   11          11   1   122246788888888787


Q ss_pred             HHHHHHHhcCCchhhhHHH
Q 012075          371 VYWVIGALADDSETLSRYS  389 (471)
Q Consensus       371 ~~~~i~~~~~~~~~~~~~~  389 (471)
                      .-.++..-..|+++.++-.
T Consensus       317 aL~li~~rs~~a~~Aa~LS  335 (395)
T COG2807         317 ALTLILLRSSDAAIAAALS  335 (395)
T ss_pred             HHHHHHhhcCChHHHHHHH
Confidence            7777888777776544333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.93  E-value=8.7e-09  Score=111.06  Aligned_cols=102  Identities=14%  Similarity=0.094  Sum_probs=85.0

Q ss_pred             HHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCC
Q 012075           67 LYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPN  146 (471)
Q Consensus        67 ~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~  146 (471)
                      ..++..++++++++++||+|||++++++.++..+.....   ...++.+.+++.+++.|++.+..+++..++++|+.|++
T Consensus       604 ~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~---~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~  680 (742)
T TIGR01299       604 GTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFL---SFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSD  680 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            335556778999999999999999998887766533222   22456677888899999988888998999999999999


Q ss_pred             chhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          147 RKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       147 ~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +||+++|+..+...+|.++||.+..
T Consensus       681 ~Rgta~Gi~~~~~rlGaiigp~i~g  705 (742)
T TIGR01299       681 KRATAFGFLNALCKAAAVLGILIFG  705 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999873

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.93  E-value=1.3e-08  Score=103.90  Aligned_cols=109  Identities=11%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhccc---chHHHHHHHHHHhhhhhHHHhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHK---HQAFAIAAGAILGIGAGLLWAAEGA  137 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~---~~~~li~~r~l~G~g~g~~~~~~~~  137 (471)
                      ....++......++.++.++++||+|||+.+.++.++..+....... . .+   +.+.+++.+++.|++.+...+....
T Consensus       254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~-~-~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~  331 (418)
T TIGR00889       254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY-G-DPEYFGYALLFLSMIVYGCAFDFFNISGSV  331 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-c-CcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555667789999999999999999999876653222221 1 12   2456788999999999988888889


Q ss_pred             hhccCCCCCchhhHHHHHH-HHHHhhhhhhhHHHH
Q 012075          138 IMTSYPPPNRKGTYISIFW-SIFNMGGVIGGLIPF  171 (471)
Q Consensus       138 ~i~~~~~~~~RG~~~g~~~-~~~~~G~~iG~~i~~  171 (471)
                      ++.|..|+++||+..|+++ ....+|..+||.++.
T Consensus       332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G  366 (418)
T TIGR00889       332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG  366 (418)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999997 668899999999873

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.86  E-value=1.9e-07  Score=93.25  Aligned_cols=293  Identities=15%  Similarity=0.008  Sum_probs=130.3

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccch-HHHHHHHHHHhhhhhH----H
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQ-AFAIAAGAILGIGAGL----L  131 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~-~~li~~r~l~G~g~g~----~  131 (471)
                      +...+...+.......+.+++.|.++||+|.|+-++....+..+..+.+......+-. .-++.+-++.|+..+.    .
T Consensus        42 ~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~  121 (412)
T PF01306_consen   42 GTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAG  121 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            4444444454444445556788999999997666554433222222222211101100 1123333444444333    3


Q ss_pred             HhhhhhhhccCCC----CCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC
Q 012075          132 WAAEGAIMTSYPP----PNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP  207 (471)
Q Consensus       132 ~~~~~~~i~~~~~----~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  207 (471)
                      .+..-+|+.+.+.    +--|.|.-|      ++|..++..++..+...+      ....+++......+..++.++.+|
T Consensus       122 ~~~~Ea~~er~sr~~~feYG~~R~wG------Sig~ai~s~~~G~L~~i~------p~~~fwi~s~~~~il~lll~~~~~  189 (412)
T PF01306_consen  122 VPLSEAYAERVSRRNGFEYGRARMWG------SIGFAIASLLAGILFNIN------PNIIFWIASAAAIILLLLLLLLKP  189 (412)
T ss_dssp             HHHHHHHHHHHHHHHSS-HHHHHHHH------HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHSS--
T ss_pred             chHHHHHHHHHHHHhcCCcchHHHHh------hHHHHHHHHHhheeeeeC------ccHHHHHHHHHHHHHHHHHHHcCC
Confidence            3333444433321    111334433      455556655542221110      112233333333333333344443


Q ss_pred             CCccc-cCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhH-hHh--hhcccccccccccc-----chhhhHH
Q 012075          208 PGRVI-RDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASN-FFY--SYQFNNVNGLQFNL-----RTRGLNN  278 (471)
Q Consensus       208 p~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~--s~~~~~~~~~~~~~-----~~~~l~~  278 (471)
                      ++..+ +.++++  ..+++  +..+++..+.+++|+++.+........ .+.  ..+++.+....++.     ...++..
T Consensus       190 ~~~~~~~~~~~~--~~~~~--~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~  265 (412)
T PF01306_consen  190 DVPPQAEVADAL--GAKKD--KVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLW  265 (412)
T ss_dssp             -SSSSS-SSTTS--SS--------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             cCchhhhhhccc--ccCCC--CCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHH
Confidence            22111 111110  01111  113466777889998876665444332 111  11223332222222     1234444


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHH
Q 012075          279 VFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYF  358 (471)
Q Consensus       279 ~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (471)
                      ...-+.+++.-.+..++.+|  +|-|+.++++..++. +=...    ..               +.   ++.+.+.++-.
T Consensus       266 s~~v~~E~~~m~~~p~li~r--ig~k~~Lllag~i~~-iRi~~----~~---------------~~---~~~~~i~~~kl  320 (412)
T PF01306_consen  266 SVQVFLEALMMFFSPWLINR--IGAKNLLLLAGVIMA-IRIIG----SG---------------FA---TNPWVISLIKL  320 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHH-HHHHH----HH---------------T-----SHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh--cChHhHHHHHHHHHH-HHHHH----Hh---------------hh---cchHHHHHHHH
Confidence            45566677777777788888  888887776655442 11111    11               11   12234566777


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q 012075          359 CYGLLDAMFQSMVYWVIGALADDSETLSRYSGF  391 (471)
Q Consensus       359 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  391 (471)
                      +.++-.+.......-++.+.++ +|-.++...+
T Consensus       321 LH~~e~~l~lva~fkYI~~~fd-~rlsAt~y~v  352 (412)
T PF01306_consen  321 LHALEFPLLLVAAFKYITAHFD-KRLSATLYLV  352 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-HhHHHHHHHH
Confidence            7787777776666778999993 4433444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.83  E-value=1.4e-07  Score=95.33  Aligned_cols=107  Identities=13%  Similarity=0.093  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      +...+.......++.+++|+++||+|||+.+..+.+...+.....   ...++.+.+++.+++.+++.+........+..
T Consensus       255 g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~  331 (393)
T PRK15011        255 GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM---LMAHSPAILLGLQLLNAIYIGILGGIGMLYFQ  331 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555678999999999999998887765443322111   12466777888999999988887777777888


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          141 SYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      |..| ++||+++++++...++|..+|+.++.
T Consensus       332 ~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G  361 (393)
T PRK15011        332 DLMP-GQAGSATTLYTNTSRVGWIIAGSLAG  361 (393)
T ss_pred             HhCC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            8876 46999999999999999999999873

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.78  E-value=1.5e-07  Score=95.14  Aligned_cols=104  Identities=20%  Similarity=0.217  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCC
Q 012075           64 NTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYP  143 (471)
Q Consensus        64 ~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~  143 (471)
                      .+....+..++.++.+++.||+|||+.+.++.++..+.....   ...++.+.+++.+++.|++.+...+.......|..
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  331 (399)
T PRK05122        255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLL---WLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV  331 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence            334445556677899999999999999888876554432222   22467777888999999999988877777778888


Q ss_pred             CCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          144 PPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       144 ~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      |+++||+.+|++.....+|..+++.+.
T Consensus       332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~  358 (399)
T PRK05122        332 PPQNRGAALGAYSVFLDLSLGITGPLA  358 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988887765

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.78  E-value=1.2e-07  Score=96.12  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             hhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           59 AANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ..+...+....+..++.++.|++.||+|||+.+.++.+...+.....   ...++.+.+++..++.|++.+...+...++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  332 (406)
T PRK11551        256 QAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL---AAAPSFAGMLLAGFAAGLFVVGGQSVLYAL  332 (406)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            33444555556667888999999999999999888655443322222   224567777788888898887777777888


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ..|..|+++||+..|++.....+|..+||.+..
T Consensus       333 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g  365 (406)
T PRK11551        333 APLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG  365 (406)
T ss_pred             HHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh
Confidence            899999999999999999999999999999873

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.75  E-value=7e-08  Score=98.49  Aligned_cols=107  Identities=11%  Similarity=-0.023  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      +...++......++.+++|++.||+|||+.+.++.+++.+.....   ..+++.+.+++.+++.|++.+...+....++.
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  341 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGS---GFATGPLEVSILKLLHAFEVPFLLVGVFKYIT  341 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455566788999999999999999988887666533222   23578888899999999999988777778889


Q ss_pred             cCCCCCchhhHHHH-HHHHHHhhhhhhhHHH
Q 012075          141 SYPPPNRKGTYISI-FWSIFNMGGVIGGLIP  170 (471)
Q Consensus       141 ~~~~~~~RG~~~g~-~~~~~~~G~~iG~~i~  170 (471)
                      |..|++.|+...+. ++....+|..+|+.+.
T Consensus       342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~  372 (420)
T PRK09528        342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLA  372 (420)
T ss_pred             HHcCccceeeeeeehHHHHHHHHHHHHHHHH
Confidence            98899999987655 6777889999998886

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.75  E-value=9.9e-08  Score=96.66  Aligned_cols=128  Identities=18%  Similarity=0.141  Sum_probs=92.2

Q ss_pred             HHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCch
Q 012075           69 TTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRK  148 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~R  148 (471)
                      ....++.+..++++||+|||+.+.++.+...+.....   ...++.+.+++.+++.|++.+...+...+++.+..|+++|
T Consensus       269 l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  345 (408)
T PRK09874        269 VAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPM---SFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIA  345 (408)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccc
Confidence            3444566788999999999999998877654432222   2246778888999999999999888888888888899999


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHh
Q 012075          149 GTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLV  204 (471)
Q Consensus       149 G~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  204 (471)
                      |+.++++.....+|..+||.+...+...    .++++ .|++..++.+++.++..+
T Consensus       346 g~~~~~~~~~~~~g~~~gp~~~G~l~~~----~g~~~-~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        346 GRIFSYNQSFRDIGNVTGPLMGAAISAN----YGFRA-VFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             eeeehHHHHHHHHHHHhhHHHHHHHHhh----cchhH-HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987433221    12332 344444444544444443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.74  E-value=3.2e-07  Score=93.48  Aligned_cols=109  Identities=13%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      .+...+....+..++.++.+++.||.++|+.+..+.++..+.....   ...++.+.+.++.++.|++.+...+...+++
T Consensus       261 ~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  337 (417)
T PRK10489        261 IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF---GLMPMWILAVLCLALFGYLSAISSLLQYTLL  337 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH---HccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455566777889999999888888887776554432222   2346677778889999999988777777888


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      .|..|++.||+.+|++....++|..+|+.+..
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence            99999999999999999999999999999873

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.74  E-value=1.8e-07  Score=92.05  Aligned_cols=114  Identities=22%  Similarity=0.266  Sum_probs=93.0

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhH-HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQV-TLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~-~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      +...+...+....+..++.++.+++.||+|||+ .+.++.+...+......   ..++.+.+++..++.|++.+..++..
T Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~  286 (352)
T cd06174         210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA---LAPSLALLLVALLLLGFGLGFAFPAL  286 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHhccchhH
Confidence            333444455556667778899999999999999 88888877665333222   24668889999999999999999999


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ..++.|..|+++||+.++++.....+|..+++.+...+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.72  E-value=3.6e-07  Score=92.04  Aligned_cols=128  Identities=8%  Similarity=-0.055  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      +...+.......++.++++.+.||+|+|+.+.++.+...+.....   ..+++.+.+++..+++|++.+..+++...|+.
T Consensus       243 g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~  319 (382)
T TIGR00902       243 GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII---GAIEAFPLIFLLQILHCGTFAVCHLAAMRYIA  319 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH---HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445556789999999999999999988766532222   33678899999999999999999999999999


Q ss_pred             cCCCCCchhhHHHHHH-HHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHH
Q 012075          141 SYPPPNRKGTYISIFW-SIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAG  198 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~-~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (471)
                      +. |+++|++..++++ ....+|..+|+.++ |...+.     .....|....++.+++
T Consensus       320 ~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~-G~l~~~-----~g~~~~~~~~~~~~~~  371 (382)
T TIGR00902       320 AQ-PGSEIAKLQALYNALAMGGLIAIFTAFA-GFIYPT-----LGAGTFVFMAIIAAAA  371 (382)
T ss_pred             hC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-----ccHHHHHHHHHHHHHH
Confidence            88 9999999999987 46778999999998 333321     1234455554444444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.68  E-value=5.3e-07  Score=90.11  Aligned_cols=98  Identities=15%  Similarity=0.138  Sum_probs=75.7

Q ss_pred             HHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchh
Q 012075           70 TFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKG  149 (471)
Q Consensus        70 ~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG  149 (471)
                      ...++.++.+++.||+|||+.+.++.+...+......   ..++.+.+++.+++.|++.+...+....+..|..| ++|+
T Consensus       247 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~  322 (375)
T TIGR00899       247 LEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA---ADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAG  322 (375)
T ss_pred             HHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhh
Confidence            3445668899999999999998887765433222211   23567778889999999999887777788888865 4677


Q ss_pred             hHHHHHHHHHHhhhhhhhHHHH
Q 012075          150 TYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       150 ~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +.+++++...++|..+|+.+..
T Consensus       323 ~~~~~~~~~~~~g~~~g~~~~g  344 (375)
T TIGR00899       323 AATTLYTNTGRVGWIIAGSVGG  344 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998873

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.64  E-value=2.7e-07  Score=91.84  Aligned_cols=108  Identities=14%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhccc--chHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHK--HQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~--~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ....+.......+++++.|++.||+|||+.+.++.+...+.......   .+  +...+++..++.|++.+...+..+.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~  319 (377)
T TIGR00890       243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF---IPMLNDVLFLATVALVFFTWGGTISLFPSL  319 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---cccchhHHHHHHHHHHHHHhccchhccHHH
Confidence            33444555566778899999999999999998887766553322222   22  23345567888898888877777888


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +.|..|+++||+..|++.....+|..+||.+..
T Consensus       320 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g  352 (377)
T TIGR00890       320 VSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS  352 (377)
T ss_pred             HHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998863

>PRK12382 putative transporter; Provisional

Probab=98.59  E-value=8.5e-07  Score=89.54  Aligned_cols=101  Identities=17%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             HHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCc
Q 012075           68 YTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNR  147 (471)
Q Consensus        68 ~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~  147 (471)
                      .....+++++.+++.||+|||+.+.++..+..+.....   ...++.+.++++.++.|++.+...+.....+.|..|+++
T Consensus       259 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  335 (392)
T PRK12382        259 GGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL---WLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV  335 (392)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH
Confidence            33445677899999999999999988877655432222   224677788889999999999887777778888889999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          148 KGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       148 RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ||+..|+++....+|..+|+.+..
T Consensus       336 ~g~~~g~~~~~~~~g~~ig~~~~g  359 (392)
T PRK12382        336 RGTALGGYAAFQDIAYGVSGPLAG  359 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998863

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.57  E-value=6.4e-06  Score=84.29  Aligned_cols=295  Identities=15%  Similarity=0.113  Sum_probs=150.1

Q ss_pred             HhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhH--HHhhhhhhhccCCCCCchh
Q 012075           72 TIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGL--LWAAEGAIMTSYPPPNRKG  149 (471)
Q Consensus        72 ~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~--~~~~~~~~i~~~~~~~~RG  149 (471)
                      .+.+.+.|.++|++|||..+.+..+...+......+    +.+|.++    +.|+..+.  .+...-+|++|++..++|.
T Consensus        76 ~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~----~~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   76 LISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF----QGYWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             HHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH----HHHHHhh----hcccccchhhhhhhhhhheeeccchhHHH
Confidence            345678999999999999999999876554333332    2344444    55554444  3556788999999999999


Q ss_pred             hHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccCCC--Ccccccc----
Q 012075          150 TYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDG--THCTNIK----  223 (471)
Q Consensus       150 ~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~~~--~~~~~~~----  223 (471)
                      ...|+....+..+..+||..+.......    +. ...+.+..+...+..+...+..|++..+++++  .......    
T Consensus       148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~----~~-a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~  222 (463)
T KOG2816|consen  148 SSIGLLSGTFGAGLVIGPALGGYLVKFL----GI-ALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLD  222 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhc----Cc-hHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCccc
Confidence            9999999999999999999874443211    11 12233344444555555555555433222111  1100000    


Q ss_pred             CCCHHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhc----ccccccc--ccccchhhhHHHHHHHHHHHHhhhhhhhcc
Q 012075          224 YSNVSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQ----FNNVNGL--QFNLRTRGLNNVFYWGAQMLGSVGIGYIFD  297 (471)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~----~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D  297 (471)
                      +....+.++...+.-.+|..+.+....++.-+.-...    ...+...  +++.++.+......++...++..+...+..
T Consensus       223 ~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~  302 (463)
T KOG2816|consen  223 SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLS  302 (463)
T ss_pred             chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111112222222123444444444444333211111    0112222  334444443333344555555554443332


Q ss_pred             cCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 012075          298 FSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGA  377 (471)
Q Consensus       298 ~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  377 (471)
                      +. .|-|+....|.... .+....++  +               .|..     +..+. ............+...+..+.
T Consensus       303 ~~-l~~~~~i~lGl~~~-~~~~~~~a--f---------------~~~~-----w~~~~-~~v~~~~~~~~~pa~~s~~s~  357 (463)
T KOG2816|consen  303 SI-LGEKRLISLGLLSE-FLQLLLFA--F---------------ATET-----WMMFA-AGVVVALAGIVFPAIRAFASI  357 (463)
T ss_pred             HH-HhhhhHhhHHHHHH-HHHHHHHH--H---------------hccc-----hhhhH-HHHHHHhhcchhHHHHhHHHh
Confidence            32 45555555554333 22222222  1               1111     11111 112233333444445555666


Q ss_pred             hcCCchhhhHHHHHHHHHHHHHHHHHhh
Q 012075          378 LADDSETLSRYSGFYKGVQSAGAAVAWQ  405 (471)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~s~g~~i~~~  405 (471)
                      +. +++++++++++...+++++..++-.
T Consensus       358 ~v-~~~e~g~v~~~is~i~~l~~~~~~~  384 (463)
T KOG2816|consen  358 LV-SPEEQGKVFGIISGIEGLSGVVSPA  384 (463)
T ss_pred             hc-ccccccchhhHHHHHHHHhhhhhHH
Confidence            55 3456689999988888777766654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.57  E-value=2e-06  Score=87.01  Aligned_cols=111  Identities=9%  Similarity=0.005  Sum_probs=74.2

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      ....+...+....+..++.++.+++.||+|||+.++++..+..+.......  ..++...+.  -++.|++.+...+...
T Consensus       239 ~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~--~~l~g~g~g~~~~~~~  314 (393)
T PRK09705        239 AQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW--LPLQLPVLW--AMVCGLGLGGAFPLCL  314 (393)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH--ccchHHHHH--HHHHHHhccchHHHHH
Confidence            333444455555666788899999999999999988886654442222211  122222222  2456777777665555


Q ss_pred             hhhccCC-CCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          137 AIMTSYP-PPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       137 ~~i~~~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ....+.. |+++||+.+|+.+....++..+||.+..
T Consensus       315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G  350 (393)
T PRK09705        315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSG  350 (393)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555 4678999999999999999999998863

>PRK10504 putative transporter; Provisional

Probab=98.55  E-value=1.8e-06  Score=89.52  Aligned_cols=102  Identities=13%  Similarity=0.026  Sum_probs=77.0

Q ss_pred             HHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCch
Q 012075           69 TTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRK  148 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~R  148 (471)
                      ....++.++++++.||+|||+.+.++.++..+...........++.+.+.+.-++.|++.+...+....+..+..|+++|
T Consensus       308 ~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  387 (471)
T PRK10504        308 LGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLA  387 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhc
Confidence            33344557899999999999999988876655322222211123344455667788898888888888888888999999


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHH
Q 012075          149 GTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       149 G~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      |..++++.....+|..+|+.+.
T Consensus       388 g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        388 SSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998886

>PRK03545 putative arabinose transporter; Provisional

Probab=98.54  E-value=2.3e-06  Score=86.43  Aligned_cols=107  Identities=15%  Similarity=0.045  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      ....+.......+++++.++++||+|||... ++..+..+..... . ...++.+.+++..++.|++.+...+....++.
T Consensus       244 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l-~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  320 (390)
T PRK03545        244 TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLL-L-PAANSEWHLSVLSIFWGIAIMCIGLAMQVKVL  320 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHH-H-HHhchHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            3334444455667789999999999998754 3433222211111 1 12466778888999999988766555666777


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          141 SYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +..| ++||+++|++....++|..+|+.+..
T Consensus       321 ~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G  350 (390)
T PRK03545        321 KLAP-DATDVAMALFSGIFNIGIGAGALLGN  350 (390)
T ss_pred             HhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7754 68999999999999999999999873

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.52  E-value=7.6e-07  Score=89.18  Aligned_cols=111  Identities=15%  Similarity=0.036  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHH-HHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYA-GSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~-~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      +...........++.++.++++||+|||+.+.++..+..+.. .........++.+.++...++.|++.+...+....++
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  337 (394)
T TIGR00883       258 LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFL  337 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            334444555666778899999999999998876554333211 1111111134667777888999999988888888999


Q ss_pred             ccCCCCCchhhHHHH-HHHHHHhhhhhhhHHHH
Q 012075          140 TSYPPPNRKGTYISI-FWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~-~~~~~~~G~~iG~~i~~  171 (471)
                      .|..|+++|++..++ +.....+|..+||.+..
T Consensus       338 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       338 PELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            999999999999998 45566788888988873

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00898 2A0119 cation transport protein

Probab=98.49  E-value=3.5e-06  Score=88.10  Aligned_cols=100  Identities=9%  Similarity=0.028  Sum_probs=76.7

Q ss_pred             HHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhh
Q 012075           71 FTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGT  150 (471)
Q Consensus        71 ~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~  150 (471)
                      ...+.++.+.+.||+|||+.+.++.++..+....... ....+.+..++.-++.+++.+..++....+..|..|++.|++
T Consensus       368 ~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  446 (505)
T TIGR00898       368 ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF-VPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNL  446 (505)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhh
Confidence            3456688999999999999999988765543322222 111222555666677778888778888899999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHHHH
Q 012075          151 YISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       151 ~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      .+|+......+|.+++|.+..
T Consensus       447 ~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       447 GVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             hHhHHHHHHHHHHHHHhHHHH
Confidence            999999999999999998874

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.48  E-value=0.00015  Score=73.18  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=78.7

Q ss_pred             hhhchhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC--Cch
Q 012075           73 IFGILGGGIYNI-LGPQVTLISACSTYVLYAGSFLYYNHH-KHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP--NRK  148 (471)
Q Consensus        73 i~~~~~g~l~d~-~Grk~~l~i~~~~~~~~~~~~~~~~~~-~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~--~~R  148 (471)
                      +.++++|+++|| +|+|++++.|.+++.+.-.....  .+ .+...++++-++.++|.|..-+...+.+.|..|+  .+|
T Consensus        76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~--~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr  153 (498)
T COG3104          76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI--SSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR  153 (498)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--cccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence            456889999999 89999999999988764433322  11 3567889999999999999988888888888763  247


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          149 GTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       149 G~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      -..++++.+..++|++++|++....
T Consensus       154 D~gFt~fY~~iNiGsl~~p~i~~~~  178 (498)
T COG3104         154 DGGFTLFYMGINIGSLIAPIITGLL  178 (498)
T ss_pred             CCCccEEEEEeehHHHHHHHHHHHH
Confidence            7788999999999999999987433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.45  E-value=6.5e-06  Score=82.85  Aligned_cols=107  Identities=15%  Similarity=0.036  Sum_probs=79.8

Q ss_pred             hhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           59 AANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ..+...+.......++.++.+++.||+|||+.+.++.....+......      +....+.+.++.|++.....+.....
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~~~~~~~p~~~~~  309 (381)
T PRK03633        236 SIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML------SQAAMAPALFILGAAGFTLYPVAMAW  309 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            334445555566677889999999999999999888776554222111      12344567788888777777777788


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +.|..|+++++...+.+....++|..+||.++.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G  342 (381)
T PRK03633        310 ACEKVEHHELVAMNQALLLSYTVGSLLGPSFTA  342 (381)
T ss_pred             HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889888888888889888889999999999873

>TIGR00895 2A0115 benzoate transport

Probab=98.45  E-value=1.6e-06  Score=87.09  Aligned_cols=110  Identities=20%  Similarity=0.158  Sum_probs=83.2

Q ss_pred             hhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhh
Q 012075           58 TAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGA  137 (471)
Q Consensus        58 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~  137 (471)
                      ...+...+....+..++.++.++++||+|||+.+....+ ..+......  ...++.+.+++..++.|++.+...+...+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  361 (398)
T TIGR00895       285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL-GAVFAVLVG--STLFSPTLLLLLGAIAGFFVNGGQSGLYA  361 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555566677888999999999999954443333 222111111  11356777888899999999999888999


Q ss_pred             hhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          138 IMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       138 ~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ++.|..|+++||+.+|++.....+|..+||.+.
T Consensus       362 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~  394 (398)
T TIGR00895       362 LMALFYPTAIRATGVGWAIGIGRLGAIIGPILA  394 (398)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999886

>PRK09952 shikimate transporter; Provisional

Probab=98.44  E-value=6.3e-06  Score=84.65  Aligned_cols=103  Identities=11%  Similarity=-0.009  Sum_probs=71.1

Q ss_pred             HHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchh
Q 012075           71 FTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN-HHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKG  149 (471)
Q Consensus        71 ~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG  149 (471)
                      ..++.++.|+++||+|||+.++.+.+...+......... ..++.+.+++.-++.|++.+..++...+++.|..|++.|+
T Consensus       299 ~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~  378 (438)
T PRK09952        299 SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY  378 (438)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH
Confidence            345667899999999999998887654433221121111 1123444555667778888887777889999999999999


Q ss_pred             hHHHHHH-HHHHhhhhhhhHHHHHh
Q 012075          150 TYISIFW-SIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       150 ~~~g~~~-~~~~~G~~iG~~i~~~~  173 (471)
                      ...++-+ ....+|..++|.+...+
T Consensus       379 tg~g~~~~~~~~lgg~~~p~i~g~l  403 (438)
T PRK09952        379 SGAGVGYQVASVVGGGFTPFIAAAL  403 (438)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            8888844 44557888888776333

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.42  E-value=1.9e-06  Score=89.75  Aligned_cols=114  Identities=8%  Similarity=-0.023  Sum_probs=79.4

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +...+...+....+..+++++.|+++||+|||+.+.++.++..+....... ....+.+.+.+..++.|+......+..+
T Consensus       310 ~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (496)
T PRK03893        310 PHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA-IGGANVWVLGLLLFFQQMLGQGISGLLP  388 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHhcccchhhH
Confidence            444455556666777788899999999999999988877554432221111 1123344444555554443333445667


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      .++.|..|+++||+.+|+++....+|..+||.+..
T Consensus       389 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        389 KLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             HHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHH
Confidence            78899999999999999999999999999999873

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.42  E-value=4e-06  Score=86.91  Aligned_cols=113  Identities=14%  Similarity=0.055  Sum_probs=76.7

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +...+...+....+..++.+++|+++||+|||+.+++......+....... ...++.+.+++.+++.|+.........+
T Consensus       293 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~  371 (467)
T PRK09556        293 KEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-QHATSEYMYLASLFALGFLVFGPQLLIG  371 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHhhHHHHHH
Confidence            444445556666677889999999999999998876654433221111111 1234566677888888865444333334


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHh-hhhhhhHHH
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNM-GGVIGGLIP  170 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~  170 (471)
                      .+..|..|+++||++.|+.....++ |..++|.+.
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~  406 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGL  406 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhH
Confidence            5667999999999999999888775 667777765

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.41  E-value=1.7e-06  Score=89.34  Aligned_cols=113  Identities=11%  Similarity=-0.015  Sum_probs=81.1

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhc--cchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNI--LGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~--~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      +...+...+....+..++.++.+.++||  +++|+...++....... .+.+.....++.+.+++.+++.|++.+..++.
T Consensus       275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~-l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~  353 (455)
T TIGR00892       275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG-LTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL  353 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence            3344444555555556667888999997  44454444433222111 11112223567888899999999999998888


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ...++.|..|+++||+.+|++....++|..+||.+.
T Consensus       354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence            888899999999999999999999999999999887

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.40  E-value=5.5e-06  Score=84.99  Aligned_cols=113  Identities=14%  Similarity=0.023  Sum_probs=68.5

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhcc--c-hhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNIL--G-PQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G-rk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      ....+...+....+..++.+++|+++||+  + ||+......+...+......... ..+...+.+..+..|++......
T Consensus       278 ~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~  356 (434)
T PRK11663        278 LVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQM  356 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHH
Confidence            33444556666677788899999999999  3 33332222211111111111111 22333344444445544332222


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ....+..|..|+++||+.+|+.+...++|..+||.+.
T Consensus       357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~  393 (434)
T PRK11663        357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPL  393 (434)
T ss_pred             HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccH
Confidence            3355678999999999999999999999999998876

>TIGR00897 2A0118 polyol permease family

Probab=98.40  E-value=6.9e-06  Score=83.33  Aligned_cols=137  Identities=17%  Similarity=0.185  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhhhchhhhhhhccchhHHHH-HHHHHHHHHHHHHHh-h-hcccchHHHHHHHHHHhhhhhHHHhhhhhh
Q 012075           62 NANTALYTTFTIFGILGGGIYNILGPQVTLI-SACSTYVLYAGSFLY-Y-NHHKHQAFAIAAGAILGIGAGLLWAAEGAI  138 (471)
Q Consensus        62 ~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~-i~~~~~~~~~~~~~~-~-~~~~~~~~li~~r~l~G~g~g~~~~~~~~~  138 (471)
                      ...+....+..+++++.|+++||+|||+.+. .+.+...+....... . ...++.+..++..++.|++.+...+. ...
T Consensus       261 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~  339 (402)
T TIGR00897       261 QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAV  339 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            3344455667788899999999999988764 232222221111111 0 11245677788899999988875443 345


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhc
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVI  205 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  205 (471)
                      +.|. +|++||+.+|+++....+|..+||.+...+ .+.   .++ ...++...++..++.++..|+
T Consensus       340 ~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l-~~~---~g~-~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       340 FPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLF-IGF---FGA-IGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---cch-HHHHHHHHHHHHHHHHHHHHh
Confidence            5666 567899999999999999999999887333 221   122 223344444444444444454

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.40  E-value=3.9e-06  Score=86.31  Aligned_cols=140  Identities=11%  Similarity=0.014  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHh--hhccc------chHHHHHHHHHHhhhhhH-HH
Q 012075           62 NANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLY--YNHHK------HQAFAIAAGAILGIGAGL-LW  132 (471)
Q Consensus        62 ~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~--~~~~~------~~~~li~~r~l~G~g~g~-~~  132 (471)
                      ........+..++.+++++++||+|||+.+.++.++..+.......  ....+      +...+....++ +.+.+. ..
T Consensus       323 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  401 (481)
T TIGR00879       323 LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF-IAFFAMGWG  401 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH-HHHHHcccc
Confidence            3344445556678899999999999999998887655443222221  01111      22222223332 222222 23


Q ss_pred             hhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC
Q 012075          133 AAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP  207 (471)
Q Consensus       133 ~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  207 (471)
                      +....++.|..|+++||+.+++.....++|..+++.+...+...    .++.+ .|+...++.+++.++.+++.|
T Consensus       402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~----~~~~~-~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES----IGVGG-VFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-eehhHHHHHHHHHHHHheecc
Confidence            44556778999999999999999999999999999875333211    12333 334444455555555544444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.39  E-value=3.8e-06  Score=85.72  Aligned_cols=108  Identities=12%  Similarity=0.106  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhh--hhHHHhhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIG--AGLLWAAEGAI  138 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g--~g~~~~~~~~~  138 (471)
                      ....+....+..++.++++++.||+|||+.+..+.+...+.......  ..++... ...-++.|++  ........+.+
T Consensus       269 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  345 (426)
T PRK12307        269 SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR--IPQDNYL-LLGACLFGLMATNVGVGGLVPKF  345 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--HccccHH-HHHHHHHHHHHhcccHhHHHHHH
Confidence            33444455556677899999999999999988887654332221111  1112222 2222333332  22223445677


Q ss_pred             hccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          139 MTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       139 i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +.|..|+++||+++|+......+|..+||.+..
T Consensus       346 ~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g  378 (426)
T PRK12307        346 LYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT  378 (426)
T ss_pred             HHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH
Confidence            889999999999999999999999999999863

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.39  E-value=2e-06  Score=85.27  Aligned_cols=107  Identities=12%  Similarity=0.058  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhccc-chHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHK-HQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~-~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      +...+....+..++.++.+++.||+|||+.+..+.+...+......   ..+ +.+.+++..++.|++.+...+....++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  326 (365)
T TIGR00900       250 GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG---LTPPNFPLFLVLWFAIGVGYGPINVPQGTLL  326 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555667788899999999999998887654443222222   234 477888999999999999888888999


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .|..|+++||+..|++.....+|..+|+.+.
T Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  357 (365)
T TIGR00900       327 QRRVPAELLGRVFGAQFSLSHAAWPLGLILA  357 (365)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999886

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.39  E-value=9.4e-06  Score=81.73  Aligned_cols=104  Identities=7%  Similarity=-0.055  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCC
Q 012075           64 NTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYP  143 (471)
Q Consensus        64 ~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~  143 (471)
                      .+.......+..++.+++.||+|+|+.+.++.+...+.....   ...++.+.+++..++.|++.+...+....++.+. 
T Consensus       246 ~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-  321 (382)
T PRK11128        246 WSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM---GSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-  321 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            333334445566889999999999999998887665432221   2357888889999999999999888888888886 


Q ss_pred             CCCchhhHHHHHH-HHHHhhhhhhhHHHH
Q 012075          144 PPNRKGTYISIFW-SIFNMGGVIGGLIPF  171 (471)
Q Consensus       144 ~~~~RG~~~g~~~-~~~~~G~~iG~~i~~  171 (471)
                      +++++++..+.+. .....|..+|+.++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~g~~ig~~i~G  350 (382)
T PRK11128        322 PGSEVIRLQALYSALAMGGSIAIMTVLSG  350 (382)
T ss_pred             CHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667899999886 556778889998873

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.37  E-value=1e-05  Score=83.52  Aligned_cols=107  Identities=15%  Similarity=0.242  Sum_probs=86.3

Q ss_pred             HHHHHHhhhchhhhhhhccchh--HHHHHHHHHHHHHH-HHHH--h--hhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           67 LYTTFTIFGILGGGIYNILGPQ--VTLISACSTYVLYA-GSFL--Y--YNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        67 ~~~~~~i~~~~~g~l~d~~Grk--~~l~i~~~~~~~~~-~~~~--~--~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      ......+|++++|++.||+|.|  ++++++.+.+.+.. .+++  .  ....++.+.+++..++.|+..|..++..-++.
T Consensus       326 ~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~  405 (477)
T PF11700_consen  326 VQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLF  405 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3455577889999999999999  88888887764311 1111  0  00146788899999999999999999999999


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      +|+.|+++.+..+|+|...-...+.+||++-..+
T Consensus       406 ~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  406 SRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.35  E-value=1.4e-06  Score=85.86  Aligned_cols=107  Identities=23%  Similarity=0.330  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      ....+.......++.++.+++.||+|+|+.+.+......+...........++....++.-++.|++.+...+....++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  325 (352)
T PF07690_consen  246 GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQ  325 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345555556667889999999999988887777666554333332222345567777889999999999999999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhhhhh
Q 012075          141 SYPPPNRKGTYISIFWSIFNMGGVIGG  167 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~~~~~~G~~iG~  167 (471)
                      |..|+++||+..|++....++|..+||
T Consensus       326 ~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  326 ELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.35  E-value=9.2e-06  Score=83.15  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC
Q 012075           65 TALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP  144 (471)
Q Consensus        65 ~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~  144 (471)
                      .+......++.+++++++||+|||+.+.++.++..+.......  ..++.+.+++..++.|++.+...+...++++|..|
T Consensus       264 ~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  341 (437)
T TIGR00792       264 SIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF--AGSNLPLILVLIILAGFGQNFVTGLVWALVADTVD  341 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3334555667789999999999999999988765543322222  12456677788889999999888878888888765


Q ss_pred             -------CCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          145 -------PNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       145 -------~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                             ++++|..+|+++....+|..+|+.+..
T Consensus       342 ~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g  375 (437)
T TIGR00792       342 YGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG  375 (437)
T ss_pred             hhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   566899999999999999999988753

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.35  E-value=6.5e-06  Score=84.90  Aligned_cols=109  Identities=13%  Similarity=-0.028  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhcc--chhHHHH-HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNIL--GPQVTLI-SACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGA  137 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~--Grk~~l~-i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~  137 (471)
                      +........+..++.+++|+++||+  |||.... ....+..+....... ...++.+..+++.++.|.+..........
T Consensus       292 ~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  370 (452)
T PRK11273        292 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL-NPAGNPTVDMACMIVIGFLIYGPVMLIGL  370 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3334444455556789999999999  5664322 222222221111111 11234455555555555544333333445


Q ss_pred             hhccCCCCCchhhHHHHHHHHHHhhhh-hhhHHH
Q 012075          138 IMTSYPPPNRKGTYISIFWSIFNMGGV-IGGLIP  170 (471)
Q Consensus       138 ~i~~~~~~~~RG~~~g~~~~~~~~G~~-iG~~i~  170 (471)
                      +..|..|+++||+.+|+.....++|.. +||.+.
T Consensus       371 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~  404 (452)
T PRK11273        371 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  404 (452)
T ss_pred             HHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence            667899999999999999888788754 477765

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.34  E-value=4e-06  Score=88.53  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          116 FAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       116 ~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      .++++-++.|+|....++...+|+.|...+++-..++|+++++..+|+++|.+++..+
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~  296 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFC  296 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999987443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.33  E-value=2.5e-05  Score=79.01  Aligned_cols=94  Identities=23%  Similarity=0.394  Sum_probs=74.5

Q ss_pred             chhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHH----HHHHHHhhhhhHHHhhhhhhhccCCCCCchhhH
Q 012075           76 ILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAI----AAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTY  151 (471)
Q Consensus        76 ~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li----~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~  151 (471)
                      ++.+.+..|+|.|+.+.++.+.+.+=-.....  .+++.+..+    .+-.++|+..+..+.+...|+.+.+|++.|++.
T Consensus       261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~--~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~  338 (400)
T PF03825_consen  261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY--FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATA  338 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH--hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHH
Confidence            57899999999999999999987663222222  124444433    334579999999999999999999999999999


Q ss_pred             HHHHHHH-HHhhhhhhhHHHH
Q 012075          152 ISIFWSI-FNMGGVIGGLIPF  171 (471)
Q Consensus       152 ~g~~~~~-~~~G~~iG~~i~~  171 (471)
                      .+++... ..+|..+|+.++.
T Consensus       339 Q~l~~~~~~Glg~~iG~~igG  359 (400)
T PF03825_consen  339 QGLYSALSFGLGGAIGSLIGG  359 (400)
T ss_pred             HHHHHHHHhhHHHHHHHHHHH
Confidence            9999875 5689999999873

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.31  E-value=1.3e-05  Score=79.96  Aligned_cols=111  Identities=22%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHH-H----HHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLIS-A----CSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i-~----~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .+...+.......++.++.++++||+|||+.... .    .+...+...........++.+..+..-.+.+++.+ ..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  331 (399)
T TIGR00893       253 AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAI  331 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhH
Confidence            3444455556667788999999999999961111 1    11111101111111112344444444555555555 6677


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ...++.|..|+++||+.+|++.....+|..+|+.+..
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g  368 (399)
T TIGR00893       332 GWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIG  368 (399)
T ss_pred             HHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhh
Confidence            8889999999999999999999999999999998863

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.31  E-value=1.3e-05  Score=83.08  Aligned_cols=104  Identities=10%  Similarity=-0.012  Sum_probs=70.7

Q ss_pred             HHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHhhhhhHHH-hhhhhhhccCCC
Q 012075           67 LYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQA-FAIAAGAILGIGAGLLW-AAEGAIMTSYPP  144 (471)
Q Consensus        67 ~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~-~li~~r~l~G~g~g~~~-~~~~~~i~~~~~  144 (471)
                      ......++++++++++||+|||+.++.+.++..+...........+..+ ..+.+-++.+++.+..+ +....++.|..|
T Consensus       315 ~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  394 (479)
T PRK10077        315 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP  394 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCC
Confidence            3344567789999999999999999999887665433322111111111 22233344444444333 456788899999


Q ss_pred             CCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          145 PNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       145 ~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      +++||+++|+......+|.++++.+.
T Consensus       395 ~~~r~~~~g~~~~~~~~g~~~~~~~~  420 (479)
T PRK10077        395 NAIRGKALAIAVAAQWIANYFVSWTF  420 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998887664

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.31  E-value=2.2e-05  Score=80.46  Aligned_cols=110  Identities=13%  Similarity=0.126  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLY-YNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~-~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      ....++......++.++.|+++||+|||+.++++.++..+....... ....++....+..-.+.++..+........+.
T Consensus       282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (432)
T PRK10406        282 SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILK  361 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555677788899999999999888776543222111111 11112233222222223333343344466788


Q ss_pred             ccCCCCCchhhHHHHHHHHHHh-hhhhhhHHH
Q 012075          140 TSYPPPNRKGTYISIFWSIFNM-GGVIGGLIP  170 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~  170 (471)
                      .|..|++.||..+|+.+..-+. .....|.+.
T Consensus       362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~  393 (432)
T PRK10406        362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVA  393 (432)
T ss_pred             HHHCCCCccchhhhHHHHHHHHHHHhHHHHHH
Confidence            9999999999999998754332 222355554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.30  E-value=8.6e-06  Score=85.07  Aligned_cols=116  Identities=16%  Similarity=0.108  Sum_probs=87.5

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...........+++++.|++.||+|||+.+..+.++..+...........++.+..+..-++.|+|.|...+..
T Consensus       293 s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~  372 (495)
T PRK14995        293 SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAS  372 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHH
Confidence            34444444555556667788999999999999999888877655433222221223456667778899999999987777


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ...+.+..|++++|...++++...++|..+|+.+..
T Consensus       373 ~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g  408 (495)
T PRK14995        373 TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG  408 (495)
T ss_pred             HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            777778889999999999999999999999998863

>PRK03699 putative transporter; Provisional

Probab=98.30  E-value=1.7e-05  Score=80.24  Aligned_cols=110  Identities=9%  Similarity=0.039  Sum_probs=80.2

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +...+...+....+..++.++.+.++||+|||+.+....++..+.....   ...++.+.+.+..++.|++.+..++...
T Consensus       240 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~~~~~~~~~~  316 (394)
T PRK03699        240 LEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF---VNTDDPSHLLYAILGLGFFSSAIYTTII  316 (394)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH---HHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445566667778899999999999999998887765443321111   1245666677788889998887777766


Q ss_pred             hhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          137 AIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       137 ~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ++..|..| +++++..+.......+|..+||.+.
T Consensus       317 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~  349 (394)
T PRK03699        317 TLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVT  349 (394)
T ss_pred             HHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHH
Confidence            67777654 5577888888888899999999886

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.29  E-value=8.2e-06  Score=82.20  Aligned_cols=112  Identities=13%  Similarity=0.109  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      .+...+....+..++.++.+++.||+|||+.+.++.+...+......  ...++.+.+.++.++.|+..+..++..+.++
T Consensus       276 ~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (405)
T TIGR00891       276 VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVF--AIGANVAVLGLGLFFQQMLVQGIWGILPKHL  353 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHccchhhHHHHH
Confidence            33444555566677889999999999999999888765422211111  1235666777777888887777777788899


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      .|..|+++||+.+|+.+....+|..+||.+...+
T Consensus       354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.27  E-value=5.3e-06  Score=84.48  Aligned_cols=113  Identities=11%  Similarity=0.093  Sum_probs=79.0

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +..+.++....+.++..++.++.|++.||  +|||+.+..+.+...+ .....    .+    .              ++
T Consensus        41 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr--~G~r~~~~~~~~~~~~-~~~~~----~~----~--------------~~   95 (412)
T TIGR02332        41 SATMFGLAATLFYAAYVICGIPSNIMLAI--IGARRWIAGIMVLWGI-ASTAT----MF----A--------------TG   95 (412)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHH--hChHHHHHHHHHHHHH-HHHHH----HH----h--------------cC
Confidence            34456677777888889999999999999  8999976555443311 11111    10    0              12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +...++.-++.|++.+...+....++.|.++ ++++++++++++...++|..++..+..
T Consensus        96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332        96 PESLYLLRILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3335666778899988888877778899984 445689999999888888888777654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.26  E-value=2.1e-05  Score=80.62  Aligned_cols=105  Identities=18%  Similarity=0.128  Sum_probs=67.3

Q ss_pred             HHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHH-HHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC
Q 012075           66 ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAG-SFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP  144 (471)
Q Consensus        66 ~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~-~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~  144 (471)
                      ....+..++++++|+++||+|||+.++++.+...+... ........++...+.+..++.|++.+...+....++.|..|
T Consensus       282 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p  361 (434)
T PRK15075        282 CVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMP  361 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC
Confidence            33444557788999999999999998876543322111 11111112344445555666677777666666678899999


Q ss_pred             CCchhhHHHHHHHH-HHhhhhhhhHHH
Q 012075          145 PNRKGTYISIFWSI-FNMGGVIGGLIP  170 (471)
Q Consensus       145 ~~~RG~~~g~~~~~-~~~G~~iG~~i~  170 (471)
                      +++||+.+++.+.. ..++..++|.+.
T Consensus       362 ~~~rg~~~g~~~~~~~~~~g~~~p~~~  388 (434)
T PRK15075        362 AEVRTAGFSLAYSLATAIFGGFTPAIS  388 (434)
T ss_pred             CCccchheeHHHHHHHHHHhhhHHHHH
Confidence            99999999986443 334456677665

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.26  E-value=1.3e-05  Score=83.26  Aligned_cols=115  Identities=15%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHH-hhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFL-YYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~-~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      +...+........+..++.+++|++.||+|||+.+.++.++..+...... ......+.+.++..-++.|+|.+...+..
T Consensus       290 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  369 (485)
T TIGR00711       290 ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPL  369 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555566677889999999999999999888876554322222 11112345667777889999999887666


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      .....+..|+++||+++|+++...++|..+|+.+..
T Consensus       370 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  405 (485)
T TIGR00711       370 TTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT  405 (485)
T ss_pred             HHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667789999999999999999999999988863

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.21  E-value=2.4e-07  Score=96.91  Aligned_cols=57  Identities=21%  Similarity=0.313  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          115 AFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       115 ~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ..++++.++.|+|.+..++...+|+.|+.++++-+.++|+++++..+|+.+|.+++.
T Consensus       142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~  198 (539)
T PF03137_consen  142 YVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGS  198 (539)
T ss_dssp             ----------SSS--------------------------------------------
T ss_pred             HHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999988863

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.20  E-value=1.5e-05  Score=79.76  Aligned_cols=113  Identities=19%  Similarity=0.121  Sum_probs=79.0

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +..+.++....+.++..++.++.|++.||  +|||+....+.+... +.....    ...                  ++
T Consensus        38 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~--~g~r~~~~~~~~~~~-~~~~~~----~~~------------------~~   92 (385)
T TIGR00710        38 PASIVQMTLTLYLLGFAAGQLLWGPLSDR--YGRRPVLLLGLFIFA-LSSLGL----ALS------------------NN   92 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHh--cCChHHHHHHHHHHH-HHHHHH----HHH------------------cc
Confidence            44456777778889999999999999999  899987766554432 111111    000                  12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +....+..++.|++.+...+....++.|.++ +++++++.+..+....++..++..+..
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2334556677888888888888888999884 445688999988888888777766554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.20  E-value=2.6e-05  Score=79.05  Aligned_cols=92  Identities=13%  Similarity=0.036  Sum_probs=68.7

Q ss_pred             hhhhhh-hccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHH
Q 012075           77 LGGGIY-NILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIF  155 (471)
Q Consensus        77 ~~g~l~-d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~  155 (471)
                      ..+++. ||++.|+.+..+.+.+.+...   .....++.+.+++..++.|++.+...+...+++.|..|+++||+.+|++
T Consensus       262 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~  338 (400)
T PRK11646        262 PIARWSEKRFRLEHRLMAGLLIMSLSMF---PIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFS  338 (400)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHH
Confidence            334444 556766666666655543222   1122466777777888899988887778888899999999999999999


Q ss_pred             HHHHHhhhhhhhHHHH
Q 012075          156 WSIFNMGGVIGGLIPF  171 (471)
Q Consensus       156 ~~~~~~G~~iG~~i~~  171 (471)
                      +....+|..+||.+..
T Consensus       339 ~~~~~~g~~ig~~l~G  354 (400)
T PRK11646        339 RLGLALGGAIGYIGGG  354 (400)
T ss_pred             HHHHHHHHHhcccchH
Confidence            9999999999999873

>PRK09848 glucuronide transporter; Provisional

Probab=98.20  E-value=2.1e-05  Score=81.09  Aligned_cols=99  Identities=22%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             HHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCC----
Q 012075           71 FTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPN----  146 (471)
Q Consensus        71 ~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~----  146 (471)
                      ..++.++++++.||+|+|+.+.++.++..+....... ....+.+.+++..++.|+|.+...+...+..+|..|++    
T Consensus       277 ~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~-~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~  355 (448)
T PRK09848        277 TVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW-VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLT  355 (448)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence            4456788999999999999999998765543222222 11235677778888999999998888888888887643    


Q ss_pred             ---chhhHHHHHHHHHHhhhhhhhHHH
Q 012075          147 ---RKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       147 ---~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                         ++|...|.++....+|..+|+.+.
T Consensus       356 g~r~~G~~~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        356 GVRIEGLTYSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHH
Confidence               469999999999999999998875

>PRK09669 putative symporter YagG; Provisional

Probab=98.20  E-value=1.7e-05  Score=81.62  Aligned_cols=101  Identities=10%  Similarity=0.089  Sum_probs=75.2

Q ss_pred             HHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC----
Q 012075           69 TTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP----  144 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~----  144 (471)
                      ....++.+++++++||+|+|+.+.++.+...+....... ...++.+.+++..++.|++.+...+...+.++|..|    
T Consensus       275 i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~  353 (444)
T PRK09669        275 IAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF-IPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK  353 (444)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            333456688999999999999999887655432221221 113567778888899999999998888888888875    


Q ss_pred             ---CCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          145 ---PNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       145 ---~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                         ++..|...+.+.....+|..+|+.+.
T Consensus       354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~  382 (444)
T PRK09669        354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVV  382 (444)
T ss_pred             hcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence               23356778888888899999998876

>TIGR00901 2A0125 AmpG-related permease

Probab=98.18  E-value=1.8e-05  Score=78.71  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=71.1

Q ss_pred             HHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh-cc-------cchHHHHHHHHHHhhhhhHHHhhhhhhhcc
Q 012075           70 TFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN-HH-------KHQAFAIAAGAILGIGAGLLWAAEGAIMTS  141 (471)
Q Consensus        70 ~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~-~~-------~~~~~li~~r~l~G~g~g~~~~~~~~~i~~  141 (471)
                      ...++.++++++.||+|||+.++++.++..+......... ..       ++.+.++.+.++.|++.+..++...+++.|
T Consensus       257 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  336 (356)
T TIGR00901       257 GAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSK  336 (356)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3456778999999999999998888876654333222211 11       345678888999999999999999999999


Q ss_pred             CCCCCchhhHHHHHHHHHH
Q 012075          142 YPPPNRKGTYISIFWSIFN  160 (471)
Q Consensus       142 ~~~~~~RG~~~g~~~~~~~  160 (471)
                      .+|+|+||+.+|++++..+
T Consensus       337 ~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       337 LSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hcCCCccHHHHHHHHHHHh
Confidence            9999999999999877654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.18  E-value=3.9e-05  Score=77.62  Aligned_cols=105  Identities=11%  Similarity=-0.037  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccC
Q 012075           63 ANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSY  142 (471)
Q Consensus        63 ~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~  142 (471)
                      ..+.......++.++.+++.||+|||+.+.++.+++.+.....   ..++|.+.+++.+++.|++.+........+..+.
T Consensus       259 ~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       259 VTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGS---SFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444556667889999999999999999887766533222   2257888889999999999877665566677777


Q ss_pred             CCCCchhhHHHH-HHHHHHhhhhhhhHHH
Q 012075          143 PPPNRKGTYISI-FWSIFNMGGVIGGLIP  170 (471)
Q Consensus       143 ~~~~~RG~~~g~-~~~~~~~G~~iG~~i~  170 (471)
                      .+++.|+...+. ++....+|..+|+.+.
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence            788888877666 6778899999998876

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.17  E-value=0.00011  Score=76.74  Aligned_cols=103  Identities=15%  Similarity=0.050  Sum_probs=70.7

Q ss_pred             HHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCC
Q 012075           68 YTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNH-HKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPN  146 (471)
Q Consensus        68 ~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~-~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~  146 (471)
                      ..+..++.+++|+++||+|||+.++++.++..+....++.... .++.+.+.+.-++..+..|...++..++..+..+++
T Consensus       269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~  348 (491)
T PRK11010        269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS  348 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4556688899999999999998887766544432222221121 234555555556655555555555567778888999


Q ss_pred             chhhHHHHHHHHHHhhhhhhhHHH
Q 012075          147 RKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       147 ~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .+|+..++.++...+|..+++.+.
T Consensus       349 ~~~t~~gl~~s~~~lg~~~~~~~~  372 (491)
T PRK11010        349 FSATQFALLSALSAVGRVYVGPVA  372 (491)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987666654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.17  E-value=3.9e-05  Score=78.82  Aligned_cols=116  Identities=15%  Similarity=0.030  Sum_probs=71.3

Q ss_pred             ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCC
Q 012075          268 QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG  347 (471)
Q Consensus       268 ~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (471)
                      +.+..+.++....+.++..++.++.|++.||  +|||+....+...... .....    ...   +        . ..  
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~g~~~~~~~~~~~~~~-~~~~~----~~~---~--------~-~~--  115 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILSAA-VMLLM----GFV---P--------W-AT--  115 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhc--cCCceehHHHHHHHHH-HHHHH----hcc---c--------c-cc--
Confidence            3444456677778889999999999999999  7899866655443321 11111    000   0        0 01  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhh
Q 012075          348 SDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQ  405 (471)
Q Consensus       348 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~  405 (471)
                      .++....+..++.|++.+...+.....+.+.++ ++++++++++++...+++..+.-.
T Consensus       116 ~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~  172 (438)
T TIGR00712       116 SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPL  172 (438)
T ss_pred             chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHH
Confidence            122223444456677666666656667778774 345689999888877776666543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.17  E-value=5.7e-05  Score=76.62  Aligned_cols=105  Identities=10%  Similarity=-0.039  Sum_probs=74.9

Q ss_pred             HHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh--cccchHHHHHHHHHHhhhhhHHHhhhhhhhccC
Q 012075           65 TALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN--HHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSY  142 (471)
Q Consensus        65 ~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~--~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~  142 (471)
                      .....+..++.++.++++||+|||+.+.++.+...+.........  ..++.+.++++-++.|+|.+...+....... .
T Consensus       258 ~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~  336 (406)
T PRK15402        258 VPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-F  336 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-h
Confidence            334445667789999999999999999888765543222221110  1234566778889999999887655444433 3


Q ss_pred             CCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          143 PPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       143 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .++++||+..+.+.....+|..+|+.+.
T Consensus       337 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~  364 (406)
T PRK15402        337 SSDVSKGTVSAAMGMLSMLIFTVGIELS  364 (406)
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999998876

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.15  E-value=2.3e-05  Score=80.24  Aligned_cols=107  Identities=16%  Similarity=0.163  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCC
Q 012075           64 NTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYP  143 (471)
Q Consensus        64 ~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~  143 (471)
                      ..+......++.+++++++||+|+|+++..+.+++.+......... .+|.+.+++.-++.|++.+..++...+.++|+.
T Consensus       266 ~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~i  344 (428)
T PF13347_consen  266 MLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-PGSPWLVLILFILAGIGYGAFFVIPWAMLADVI  344 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-hhhHHHHHHHHHHhHhhhcccccccccccccch
Confidence            3445555667778999999999999999999998876444333311 258899999999999999999999999999987


Q ss_pred             C-------CCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          144 P-------PNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       144 ~-------~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +       +++.|...|.+.....+|..+++.+..
T Consensus       345 d~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  345 DYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             hhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            6       344688999999999999988888753

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.14  E-value=5.7e-05  Score=78.91  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=81.3

Q ss_pred             HHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC
Q 012075           66 ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP  145 (471)
Q Consensus        66 ~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~  145 (471)
                      ..-.+..+|+++.+.+.+++++++.+..+.+.+.+..   ...+.+++.+..+++-++.|++.....+...+.+.+..|+
T Consensus       262 ~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~---~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~  338 (524)
T PF05977_consen  262 AFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALAL---LLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPD  338 (524)
T ss_pred             HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHH---HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            3333344455677788888888888888887665432   2224468888888999999999999888888888899999


Q ss_pred             CchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          146 NRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       146 ~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +.|||.++++.+....+..+|.++..
T Consensus       339 ~~~GRv~si~~~~~~g~~~lGsll~G  364 (524)
T PF05977_consen  339 WVRGRVFSIYQMVFFGGMPLGSLLWG  364 (524)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988863

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.13  E-value=2.4e-05  Score=81.26  Aligned_cols=147  Identities=14%  Similarity=0.023  Sum_probs=77.7

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHH----HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHH
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVT----LISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLW  132 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~----l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~  132 (471)
                      +...+...+....+..++.+++|+++||+|||+.    ..+..+...+...........++.+..++.-++.|++.+...
T Consensus       287 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  366 (476)
T PLN00028        287 LETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAAC  366 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence            3444455556667777889999999999997621    111111111111111111223455555555566666655544


Q ss_pred             hhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCc
Q 012075          133 AAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGR  210 (471)
Q Consensus       133 ~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~  210 (471)
                      .....+..++ .+++||...|+......+|+.+++.+- ..  .  ...++.. .+....++.+++.++.++.+.|.+
T Consensus       367 ~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l~-~~--~--~~~~y~~-~f~~~~~~~~i~~~~~~~~~~~~~  437 (476)
T PLN00028        367 GATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLLF-FT--G--SSYSTET-GISLMGVMIIACTLPVAFIHFPQW  437 (476)
T ss_pred             hhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHHH-Hh--c--CCccHhh-HHHHHHHHHHHHHHHHHheeccch
Confidence            4444455565 467999999998655555555555432 11  1  1122333 344444455555556666655544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.10  E-value=1.6e-05  Score=79.67  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +..+.++......++..++.++.|++.||  +|||+....+...... ......  .  .                  ++
T Consensus        24 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~i-~~~~~~--~--~------------------~~   78 (377)
T PRK11102         24 SAGSVQMTLSAYILGFAIGQLFYGPMADS--FGRKPVILGGTLVFAL-AAVACA--L--A------------------QT   78 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhchHHhh--cCChHHHHHHHHHHHH-HHHHHH--H--H------------------cc
Confidence            43456667777889999999999999999  7899877666544421 111111  0  0                  12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +....+..++.|++.+...+....++.+.++ ++++++++++.+....++..++..+..
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~  136 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGG  136 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2335566777888888888888888899884 445688898888777777777665543

>PRK10054 putative transporter; Provisional

Probab=98.09  E-value=7.1e-05  Score=75.80  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=73.2

Q ss_pred             hchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHH
Q 012075           75 GILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISI  154 (471)
Q Consensus        75 ~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~  154 (471)
                      .++.+.+.||.+||+.+..+.+.+.+.......  ..++.+.++++.++.|+|.+...+....++.+.+|++.||++.+.
T Consensus       261 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~  338 (395)
T PRK10054        261 QYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF--SGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSA  338 (395)
T ss_pred             hhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH--cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhH
Confidence            367789999999999998887666553322221  124667778889999999998888888899999999999999887


Q ss_pred             HHHHHHhhhhhhhHHHH
Q 012075          155 FWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       155 ~~~~~~~G~~iG~~i~~  171 (471)
                      .. ...+|..+||.++.
T Consensus       339 ~~-~~~~G~~~Gp~~~G  354 (395)
T PRK10054        339 QS-LGWLGAAINPLVSG  354 (395)
T ss_pred             HH-HHHHHHHHHHHHHH
Confidence            65 45578999998873

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.06  E-value=3.8e-05  Score=77.51  Aligned_cols=109  Identities=11%  Similarity=0.083  Sum_probs=73.1

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchh
Q 012075          273 TRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAG  352 (471)
Q Consensus       273 ~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (471)
                      +.++....+.++..++.++.|++.||  +|||+.+..+..... +.....    ..    .              +++..
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~G~l~Dr--~g~r~~l~~~~~~~~-i~~~~~----~~----~--------------~~~~~   93 (392)
T PRK10473         39 QLHIAFSVYLAGMAAAMLFAGKIADR--SGRKPVAIPGAALFI-IASLLC----SL----A--------------ETSSL   93 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHH--hCChHHHHHHHHHHH-HHHHHH----HH----h--------------CcHHH
Confidence            45566667788899999999999999  899987766654332 111111    00    0              12223


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          353 PFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ..+..++.|++.+...+..+.++.|.++ +++++++.+..+...+++..++..+.
T Consensus        94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~  147 (392)
T PRK10473         94 FLAGRFLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLG  147 (392)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667788887777778888888884 45668889988887777766665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.05  E-value=1.6e-05  Score=66.70  Aligned_cols=104  Identities=19%  Similarity=0.127  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHH
Q 012075          280 FYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFC  359 (471)
Q Consensus       280 ~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (471)
                      ...++.+++.++.+++.||  +|||+....+...... .....    . .   .              .+.....+..++
T Consensus         6 ~~~~~~~~~~~~~g~~~d~--~g~~~~~~~~~~~~~~-~~~~~----~-~---~--------------~~~~~~~~~~~~   60 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDR--FGRKPVLLVGLFIFVL-STAMF----A-L---S--------------SNITVLIIARFL   60 (141)
T ss_pred             eehhHHHHHHhhHHHHHhh--cchhHHHHHHHHHHHH-HHHHH----H-H---h--------------ccHHHHHHHHHH
Confidence            4567888899999999999  7899876555433311 11111    0 0   0              122234556677


Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          360 YGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       360 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      .++..+...+..+.++.|.++ +++++++.++.+....++..++..+...
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~  109 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYP-PEERGVALGLMSAGIALGPLLGPPLGGV  109 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCC-hhhhhHHHHHHHHhHHHHHHHhHHhHHH
Confidence            888888888888888899884 3455889999998888888887766543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.05  E-value=9.7e-05  Score=68.95  Aligned_cols=147  Identities=18%  Similarity=0.158  Sum_probs=98.5

Q ss_pred             cccchhHHHHHHHHHHhhhhhhhHhh-hhc-CCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHH
Q 012075           21 RYNSPLVQVCLIGLVCFCCPGMFNAL-SGM-GGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTY   98 (471)
Q Consensus        21 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~   98 (471)
                      -+.+++..+.+++.+..+.-.-+.++ +.+ +.....++...+...++.|+..++.+.+.|.++||+||+...+.+..+-
T Consensus       261 ~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  261 TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL  340 (459)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence            35566666666666554332222222 111 1111123445566788999999999999999999999999988887654


Q ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075           99 VLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      .+..=+.+    .-+.+.-+.+-.+.|+..+....+--..++.+.|+++.|.+.|..++..++|..+-+++..
T Consensus       341 tl~~H~~l----~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag  409 (459)
T KOG4686|consen  341 TLLGHSGL----FFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG  409 (459)
T ss_pred             HHHHhhhH----HhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence            44211111    1235556788888998888754433334455668899999999999999999999999973

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.05  E-value=9.6e-05  Score=77.33  Aligned_cols=99  Identities=11%  Similarity=-0.103  Sum_probs=61.4

Q ss_pred             HhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhh
Q 012075           72 TIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN-HHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGT  150 (471)
Q Consensus        72 ~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~  150 (471)
                      .++.+++++++||+|||+.++++.++..+......... ..++...+...-+...++.....+....+.+|+.|++.||+
T Consensus       349 i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~  428 (502)
T TIGR00887       349 VPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRST  428 (502)
T ss_pred             HHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHH
Confidence            34668899999999999999888765543222211100 00111111111111111111122344566799999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHHH
Q 012075          151 YISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       151 ~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ..|+.+....+|.++++.+.
T Consensus       429 ~~g~~~~~~~~~~~~~~~~~  448 (502)
T TIGR00887       429 AHGISAASGKAGAIIGQFGF  448 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHh
Confidence            99999999999999998875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.05  E-value=4.4e-05  Score=75.35  Aligned_cols=100  Identities=11%  Similarity=0.178  Sum_probs=83.2

Q ss_pred             HHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCc
Q 012075           68 YTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNR  147 (471)
Q Consensus        68 ~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~  147 (471)
                      .....+|++++|.+.||+|.|+++.++.+++.+  .+... ........+.+...+.|+..|..+...=+|.++..|+++
T Consensus       298 ~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~--~~~~~-~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k  374 (438)
T COG2270         298 SVVAALGAIIAGFLDERFGSKPVLMIGLVILSI--AALYL-IFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK  374 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH--HHHHH-HHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence            344578899999999999999999999987765  22221 123345556778899999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhHHH
Q 012075          148 KGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       148 RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      -|+.+|+|...-...+.+||+.-
T Consensus       375 ~~~fFglyaltgra~S~~gp~lv  397 (438)
T COG2270         375 EGRFFGLYALTGRAASFLGPFLV  397 (438)
T ss_pred             ccceeehhhhhhhHHHHHHHHHH
Confidence            99999999999999999999875

>TIGR00896 CynX cyanate transporter

Probab=98.05  E-value=8e-05  Score=74.03  Aligned_cols=110  Identities=10%  Similarity=0.066  Sum_probs=74.5

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhcc-chhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNIL-GPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      +...+...+....+..+++++.|++.||+ +||+.+.++.+...+.......   .++.+... .-++.|++.+...+..
T Consensus       231 ~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~l~g~~~g~~~~~~  306 (355)
T TIGR00896       231 AATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF---APMHGLWA-WALVLGLGQGGAFPLA  306 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH---hhhhHHHH-HHHHHHHhhhhHhHHH
Confidence            44445556666777788899999999999 5677777766655443222221   22222222 4567899998877665


Q ss_pred             hhhhcc-CCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          136 GAIMTS-YPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       136 ~~~i~~-~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ...+.+ ..+++++|...++.+....+|..+||.+.
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~  342 (355)
T TIGR00896       307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV  342 (355)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544 44567789999998888888888898876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.03  E-value=8.9e-05  Score=76.33  Aligned_cols=169  Identities=13%  Similarity=0.087  Sum_probs=89.4

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhccc--CCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDF--SFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG  347 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~--~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (471)
                      +....++......+..++..++.|.++||  .|+|||+..+.+......+.+....    +.......   ...+.....
T Consensus        37 ~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~----~~~~~~~~---~~~~~~~~~  109 (477)
T TIGR01301        37 PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG----FAADIGHL---FGDNLDKKT  109 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH----hCchhhhh---ccccccccc
Confidence            33445667777888899999999999996  2489999876542222122222111    11000000   000000000


Q ss_pred             CCch--hHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHHHHHHHhhhcccC-----chhhH----
Q 012075          348 SDFA--GPFVLYFCYGLLDAMFQSMVYWVIGALAD-DSETLSRYSGFYKGVQSAGAAVAWQVDTHK-----VSLLS----  415 (471)
Q Consensus       348 ~~~~--~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~-----~p~~~----  415 (471)
                      ..+.  ..++...+..+.....++..-++++|+.+ +.|++..+.+..+.+.++|..+++.+....     .|..+    
T Consensus       110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~  189 (477)
T TIGR01301       110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC  189 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence            1111  11222223334444555666778899884 444446788888888899999998865421     11110    


Q ss_pred             -----HHHHHHHHHHhhhhhhhheeeeeeccCCCc
Q 012075          416 -----QLVVNWSLTTISYPLLVILVLLAVKDEKSP  445 (471)
Q Consensus       416 -----~~~~~~~~~~~~~~~~i~~~~~~~pet~~~  445 (471)
                           ++-..+.+-++.++.++.+..+.+||+...
T Consensus       190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~  224 (477)
T TIGR01301       190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLI  224 (477)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC
Confidence                 111222232333445556677888998543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=1.6e-05  Score=77.62  Aligned_cols=148  Identities=16%  Similarity=0.094  Sum_probs=106.0

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchh
Q 012075          273 TRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAG  352 (471)
Q Consensus       273 ~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (471)
                      +.++......+.+++.+++.|.+.||  +|+|..+++|..+|. ...++++    +    .              ..|..
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~--iGy~ipm~~Gl~vmf-~sTilFa----f----g--------------~sy~~  161 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDR--IGYKIPMVAGLFVMF-LSTILFA----F----G--------------NSYPM  161 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHH--hccccHHHHHHHHHH-HHHHHHH----H----c--------------chhHH
Confidence            46788888999999999999999998  899999988887773 2223322    1    1              23445


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHHHhhhhhhh
Q 012075          353 PFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLV  432 (471)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i  432 (471)
                      .++.=.+.|+++++..+.-..++.+.|++..+|++++|+.-.+.++|..++.-++.+..-.... ...+.+.++.+++-.
T Consensus       162 l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk-~aPFlVL~~v~Lld~  240 (464)
T KOG3764|consen  162 LFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK-SAPFLVLAIVLLLDG  240 (464)
T ss_pred             HHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC-cCcHHHHHHHHHHHH
Confidence            6777779999999999998899999996556679999888877777777776666543211111 245555555555666


Q ss_pred             heeeeeeccCCCcc
Q 012075          433 ILVLLAVKDEKSPE  446 (471)
Q Consensus       433 ~~~~~~~pet~~~~  446 (471)
                      ...++.++.|+.+|
T Consensus       241 ~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  241 ALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHHheeCccccCc
Confidence            66767777776665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.98  E-value=0.0002  Score=72.19  Aligned_cols=102  Identities=17%  Similarity=0.032  Sum_probs=68.5

Q ss_pred             HHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHh-hh--cccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC-
Q 012075           70 TFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLY-YN--HHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP-  145 (471)
Q Consensus        70 ~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~-~~--~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~-  145 (471)
                      ...++.++.|++.||+|+|+.+.++.+........... ..  ..++.+.++..-++.+++.+...++......+..++ 
T Consensus       256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  335 (390)
T TIGR02718       256 TVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG  335 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            33456789999999999999988876544221111111 00  013334445555566666676655555565555555 


Q ss_pred             CchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          146 NRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       146 ~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +++|+.++++++..++|..+||.++.
T Consensus       336 ~~~g~~~~~~~~~~~lg~~~g~~~~G  361 (390)
T TIGR02718       336 DQAGTDVTAVQSTRDLGELIASSIAG  361 (390)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999973

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.97  E-value=2.5e-05  Score=75.46  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=74.4

Q ss_pred             HhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchH--HHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchh
Q 012075           72 TIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQA--FAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKG  149 (471)
Q Consensus        72 ~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~--~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG  149 (471)
                      .-|.++.+.+.||+|||++|..+.+++.+|...... ....|..  .+..+|++.    +....++.+|..|+.|.+.|+
T Consensus       395 fPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~-c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  395 FPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT-CKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             CCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHH----hchheEEEEecCcccchhhhh
Confidence            345689999999999999999999988887655433 1233332  456677664    334456788999999999999


Q ss_pred             hHHHHHHHHHHhhhhhhhHHH
Q 012075          150 TYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       150 ~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ...|.-..+..+|.++.|.|+
T Consensus       470 tgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH
Confidence            999999999999999999998

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.97  E-value=1.4e-05  Score=78.67  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=75.1

Q ss_pred             cccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCC
Q 012075          269 FNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGS  348 (471)
Q Consensus       269 ~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (471)
                      ++..+.+.....+.+..=++=.+.|.++||  .+-|..+-.|.+..+++. +.+                   ...   +
T Consensus        61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr--~npr~fm~~gLilsai~n-il~-------------------Gfs---~  115 (448)
T COG2271          61 LSKTQLGILGSAFSITYGVSKFVMGVLSDR--SNPRYFMAFGLILSAIVN-ILF-------------------GFS---P  115 (448)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhccc--CCCceeehHHHHHHHHHH-HHH-------------------hhh---h
Confidence            555555555444444444555556789999  555554444443332111 111                   111   2


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          349 DFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       349 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      +.....++..+.|++.+...|.+.-.+...|++. ||++..++.|..+++|.++...+.
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~-eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK-ERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc-ccCceEEEehhhhhcccchHHHHH
Confidence            3455677888999999999999999999999543 569999999999999999988765

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.96  E-value=3.8e-06  Score=83.47  Aligned_cols=115  Identities=21%  Similarity=0.217  Sum_probs=89.6

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +....++....+.++..++++++|++.||  ..|++++.+|..+...+.++.   ++.                    ..
T Consensus        66 ~~s~~Gll~~vf~v~~~i~sPl~gyLadr--yNR~~v~~vG~~iW~~Av~~~---~fs--------------------~~  120 (493)
T KOG1330|consen   66 SDSELGLLQTVFIVVFMIASPLFGYLADR--YNRKRVIAVGIFIWTLAVFAS---GFS--------------------NH  120 (493)
T ss_pred             CchhccchhHHHHHHHHHHHHHHHHHHhh--cCcceEEeeHHHHHHHHHHHH---HHH--------------------HH
Confidence            33456788888899999999999999999  789998888866553222211   110                    12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccC
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHK  410 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~  410 (471)
                      ++...++=.+.|++.+.+.+....++++.|++. ++++.++++++....|..++|.++...
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~-~Rs~~~~ify~~ipvGsglG~vvgs~v  180 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD-KRSRVLGIFYFAIPVGSGLGYVVGSVV  180 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcCcch-hhhHHHHHhhhhcccccceeEEeeeee
Confidence            455677788899999999999999999999544 458999999999999999999987643

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.96  E-value=4.4e-05  Score=77.82  Aligned_cols=110  Identities=11%  Similarity=0.051  Sum_probs=70.8

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchh
Q 012075          273 TRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAG  352 (471)
Q Consensus       273 ~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (471)
                      ..+.....+.++..++.++.|.++||  +|||+....+..+.. ++....    ..               .   +++..
T Consensus        52 ~~~~~~s~~~~~~~~~~~~~G~l~dr--~Grr~~l~~~~~~~~-~~~~~~----~~---------------a---~~~~~  106 (413)
T PRK15403         52 LAPASVSLYLAGGMALQWLLGPLSDR--IGRRPVLITGALIFT-LACAAT----LF---------------T---TSMTQ  106 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHH--cCchHHHHHHHHHHH-HHHHHH----HH---------------c---CCHHH
Confidence            34445556678888889999999999  899997766644331 111111    00               0   22333


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          353 PFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ..+.-++.|++.+...+..+.++.|.++ +++++++++......+++..++..+..
T Consensus       107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~  161 (413)
T PRK15403        107 FLIARFIQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGA  161 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566777776555666677788884 345578888888887788877766654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.95  E-value=8.8e-05  Score=85.58  Aligned_cols=109  Identities=14%  Similarity=0.017  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIM  139 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i  139 (471)
                      .+...+....+..+++++++.+.||+++|+.+.++.++..+......   ..++.+.++++-++.|++.+...+...+++
T Consensus       271 ~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  347 (1146)
T PRK08633        271 VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP---TAPSLASVLVLFFLFGFSAGLFIVPLNALI  347 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34444445555667789999999999999988888776554332222   245777888889999999999888888899


Q ss_pred             ccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          140 TSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       140 ~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      .+..|+++||+.+|+......+|.++++.++.
T Consensus       348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             hhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888877764

>PRK11043 putative transporter; Provisional

Probab=97.95  E-value=0.00031  Score=71.09  Aligned_cols=105  Identities=10%  Similarity=0.011  Sum_probs=69.9

Q ss_pred             HHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh--cccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC
Q 012075           68 YTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN--HHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP  145 (471)
Q Consensus        68 ~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~--~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~  145 (471)
                      ..+..++.++.+.+.||+|||+.+....+...+.....+...  ..++.+.+++.-.+.|++.+...+....+..|.. |
T Consensus       248 ~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  326 (401)
T PRK11043        248 TIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF-P  326 (401)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-c
Confidence            345566778889999999999877655544333222221111  1244555666677888888887776666666654 5


Q ss_pred             CchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          146 NRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       146 ~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ++||++.|++......+...++.+...+
T Consensus       327 ~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        327 QATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6899999999988777777776665333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.94  E-value=0.00023  Score=73.84  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             HHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh--hcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC--
Q 012075           69 TTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYY--NHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP--  144 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~--~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~--  144 (471)
                      ....++.+++++++||+|+|+.+.++.++.++........  ...++.+.+++.-++.|++.+..++...++++|..|  
T Consensus       277 i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~  356 (473)
T PRK10429        277 AANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYG  356 (473)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3445566889999999999999988887554422222211  113456677788889999999999888899999866  


Q ss_pred             -----CCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          145 -----PNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       145 -----~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                           .++.|..+|.......+|..+|+.+.
T Consensus       357 e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~  387 (473)
T PRK10429        357 EYKLGIRCESIAYSVQTMVVKGGSAFAAFFI  387 (473)
T ss_pred             hHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence                 33456688998888889998888775

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.00055  Score=69.53  Aligned_cols=148  Identities=18%  Similarity=0.106  Sum_probs=95.8

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhHhhhhcCCC-CCCChhh-hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHH
Q 012075           22 YNSPLVQVCLIGLVCFCCPGMFNALSGMGGG-GQVDTTA-ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYV   99 (471)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~   99 (471)
                      .+|++..+.+..++.++.+...++....-.. ....+++ ....+........++.++++++.+|+|+|+.+.++.+.++
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            5566666666555555444322222111111 1112222 2222222333333446899999999999999999999887


Q ss_pred             HHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC-------CCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          100 LYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP-------PNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       100 ~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~-------~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      +.....+... .++.+.+++..++.++|.+...+..-+.++|..+       .+.-|...+.+....-+|..+|..+.
T Consensus       314 i~~~~~~f~~-~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         314 VGYLLLYFTP-AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHhhc-CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            7555544422 5678899999999999999988888888888765       34457777887778888888887553

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.92  E-value=0.0085  Score=60.00  Aligned_cols=130  Identities=17%  Similarity=0.089  Sum_probs=89.2

Q ss_pred             hhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHH
Q 012075           74 FGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYIS  153 (471)
Q Consensus        74 ~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g  153 (471)
                      .-+....+.|.+|.|++++++.+..++.-...+.   .++.+.+-+.-++-|++.+. -++-.+|+=...|+++--|+++
T Consensus        57 ~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts  132 (412)
T PF01770_consen   57 FLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---GTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTS  132 (412)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHH
Confidence            4466788999999999999999886553322333   58899999999999999887 3455667666668888888999


Q ss_pred             HHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCc
Q 012075          154 IFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGR  210 (471)
Q Consensus       154 ~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~  210 (471)
                      .-.+...+|..+|.+++..+.....  .+.....++. .....++.+..+++.+|++
T Consensus       133 ~~raa~l~g~~~s~~lgQllvs~~~--~sy~~L~~is-l~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  133 YTRAATLVGRFISSLLGQLLVSFGG--VSYFQLNYIS-LASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH-HHHHHHHHHHHHHcCCCCc
Confidence            9989999999988888754432110  1111122222 2345556666677755543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.92  E-value=7.1e-05  Score=74.40  Aligned_cols=114  Identities=17%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccc-hhH-HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILG-PQV-TLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-rk~-~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      +...+...+.......++.++.+++.||.+ ||+ .+.....................+.+..++..++.|+......+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  330 (379)
T TIGR00881       251 KEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQML  330 (379)
T ss_pred             HHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHH
Confidence            334444455555666678899999999864 333 222221111110111111111234455666777777766555555


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ...+..|..|+++||+..|+++....+|..+|+.+.
T Consensus       331 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~  366 (379)
T TIGR00881       331 IGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPL  366 (379)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhH
Confidence            667888999999999999999999999999999886

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.92  E-value=0.00011  Score=73.53  Aligned_cols=137  Identities=14%  Similarity=0.042  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccC
Q 012075           63 ANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSY  142 (471)
Q Consensus        63 ~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~  142 (471)
                      ..++-....++.=.+.+++.+|+|.|+.++++.++..+=....   +.+++.+.+.+.+.++|+-.+....+.--|+++.
T Consensus       264 l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~---~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  264 LWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS---GFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH---hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444455555789999999999999999998876643332   3478999999999999999999999999999999


Q ss_pred             CCCCchhhHHHH-HHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccC
Q 012075          143 PPPNRKGTYISI-FWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILP  207 (471)
Q Consensus       143 ~~~~~RG~~~g~-~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  207 (471)
                      .|+|..++...+ ++...++|..+.+.+. |..++.   -+. ...|++...+.....++..+..+
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~-G~lyd~---~G~-~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLA-GYLYDR---IGF-QHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhH-HhhHhh---cCc-HHHHHHHHHHHHHHHHHheeeec
Confidence            999887777666 4566677777666654 333321   111 23465555555555555555544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00055  Score=68.06  Aligned_cols=97  Identities=21%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             HHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhh
Q 012075           71 FTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGT  150 (471)
Q Consensus        71 ~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~  150 (471)
                      ..+|+++.|.+.|| +.|+.+....+...+....+..  ..++.+..++.-++.|++.+..-..-..-+++ ..|+.++.
T Consensus       260 ~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~--~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~  335 (394)
T COG2814         260 GFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF--TGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADL  335 (394)
T ss_pred             HHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHH
Confidence            45778999999999 8888888886655443333222  24566677777777777777654443444444 34889999


Q ss_pred             HHHHHHHHHHhhhhhhhHHHH
Q 012075          151 YISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       151 ~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ..+++...+|+|..+|.+++.
T Consensus       336 a~sl~~aa~nlgia~GA~lGG  356 (394)
T COG2814         336 AGSLNVAAFNLGIALGAALGG  356 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999983

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.88  E-value=0.00029  Score=70.87  Aligned_cols=110  Identities=15%  Similarity=0.041  Sum_probs=69.2

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh-h
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA-E  135 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~-~  135 (471)
                      +...+...+....+..++.++.+++.||+|+|+.+.++..+..+.......  ..++.+..++..++.++|.....+. .
T Consensus       234 ~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        234 ETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF--FGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            334444455555667788899999999999999998887655442222111  1244555566666667665544332 3


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .....+..+++.+|...  .+....+|..+||.+.
T Consensus       312 ~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~  344 (382)
T PRK10091        312 ILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCG  344 (382)
T ss_pred             HHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHh
Confidence            33444444555666543  4667789999999987

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.88  E-value=0.00033  Score=65.64  Aligned_cols=95  Identities=20%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             hchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh-h-c--ccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhh
Q 012075           75 GILGGGIYNILGPQVTLISACSTYVLYAGSFLYY-N-H--HKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGT  150 (471)
Q Consensus        75 ~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~-~-~--~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~  150 (471)
                      +++.|.+.|++|+|.++.+|.+...+.-...+.. . .  ..+.|.+.+..++.|.+.+...++.-....+++| ++||+
T Consensus        53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~  131 (250)
T PF06813_consen   53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGT  131 (250)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCc
Confidence            4889999999999999999987543322222221 1 1  2467888888888888877766666666667765 68999


Q ss_pred             HHHHHHHHHHhhhhhhhHHH
Q 012075          151 YISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       151 ~~g~~~~~~~~G~~iG~~i~  170 (471)
                      +.|+.-....++..+=..+.
T Consensus       132 vvgilk~~~GLSaai~t~i~  151 (250)
T PF06813_consen  132 VVGILKGFFGLSAAIFTQIY  151 (250)
T ss_pred             eehhhhHHHHhHHHHHHHHH
Confidence            99999988888776544443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.85  E-value=0.0001  Score=74.45  Aligned_cols=111  Identities=14%  Similarity=0.007  Sum_probs=67.4

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +..+.++....+.++..++.++.|++.||  +|||+....+..... +.....    . .   .              ++
T Consensus        41 s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr--~grr~~~~~~~~~~~-~~~~~~----~-~---~--------------~~   95 (394)
T PRK11652         41 REGAVQAVMAAYLLTYGLSQLFYGPLSDR--VGRRPVILVGMSIFI-LGTLVA----L-F---A--------------HS   95 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHh--cCChHHHHHHHHHHH-HHHHHH----H-H---H--------------cc
Confidence            44455667777889999999999999999  899997766544331 111111    0 0   0              12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                      +....+..++.|++.+...+....+..+.+++ ++++++.+..+....++..++..+
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~i  151 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-TQLRHANSLLNMGILVSPLLAPLI  151 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345556667777766666666677777633 344666666655555444444443

>TIGR01272 gluP glucose/galactose transporter

Probab=97.80  E-value=0.00067  Score=66.26  Aligned_cols=109  Identities=11%  Similarity=0.053  Sum_probs=74.9

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++.......+....++.+|.++.+++.||+|+|+.+.++.++-++.......   .++... ..+=++.|++.+..++..
T Consensus       176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~---~~~~~~-~~~~~l~g~~~s~i~P~~  251 (310)
T TIGR01272       176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL---THGYVA-MWFVLALGLFNSIMFPTI  251 (310)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH---cCCHHH-HHHHHHHHHHHHHHHHHH
Confidence            3555566677778888899999999999999999888877655443222211   233322 234557899999988887


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      -+...+..| ++.+++.++. .+-.+|..++|.+.
T Consensus       252 ~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~  284 (310)
T TIGR01272       252 FSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQ  284 (310)
T ss_pred             HHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHH
Confidence            766666544 3456677775 45668888888764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.80  E-value=0.0005  Score=69.53  Aligned_cols=111  Identities=9%  Similarity=-0.071  Sum_probs=79.4

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEG  136 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~  136 (471)
                      +...+...+....+..+++++.+++.||.++|+.+..+.+. .+  ..... ...++.+..++.-++.|++.+...+...
T Consensus       240 ~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~--~~~~~-~~~~~~~~~~~~~~~~G~~~g~~~~~~~  315 (393)
T PRK11195        240 LNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GL--VVLLM-ALQHSLLPAYPLLILIGALGGFFVVPMN  315 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HH--HHHHH-HHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            33444445555566677888999999999999888777532 22  11111 2235666677788899999988776666


Q ss_pred             hhhccCCCCCc-hhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          137 AIMTSYPPPNR-KGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       137 ~~i~~~~~~~~-RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      +.+.+..|+|+ +|+..++.+...++|..+|..+..
T Consensus       316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~  351 (393)
T PRK11195        316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS  351 (393)
T ss_pred             HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH
Confidence            77777766655 799999999999999999988764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.75  E-value=4.5e-05  Score=78.95  Aligned_cols=113  Identities=14%  Similarity=0.100  Sum_probs=78.5

Q ss_pred             chhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCch
Q 012075          272 RTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFA  351 (471)
Q Consensus       272 ~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (471)
                      .+.++....+.++.+++.++.|++.||  +|||+.+..+.++..+.. ....  .. .              .   ..+.
T Consensus        76 ~~~g~~~s~~~~~~~~~~~~~g~l~dr--~g~r~~l~~~~~~~~~~~-~~~~--~~-~--------------~---~~~~  132 (465)
T TIGR00894        76 ALQGLILSSHFYGQIIIQIPVGYLAGK--YVFKWSIGIGMFLSSVIS-IVIP--WA-A--------------G---GGIA  132 (465)
T ss_pred             HHhhHHHHHHHHHHHHHHcchHHHHHH--hCcchhhHHHHHHHHHHH-HHHH--HH-H--------------H---cCch
Confidence            345667777889999999999999999  899987766544332111 1110  00 0              0   1223


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          352 GPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       352 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ..++.-++.|++.+...+....++++.++ +++++++.++......+|..++..+..
T Consensus       133 ~l~~~r~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~  188 (465)
T TIGR00894       133 LVVFCRVIQGLAQGSVSPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISG  188 (465)
T ss_pred             HHHHHHHHHHHhcccchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666778899988888888888999984 456689999988877888887776543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.75  E-value=0.0011  Score=66.94  Aligned_cols=100  Identities=14%  Similarity=0.031  Sum_probs=69.3

Q ss_pred             HHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCch
Q 012075           69 TTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRK  148 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~R  148 (471)
                      .+..++.++.+.+.||.+ |+.++.+.++..+..  .......++.+.+++..++.|++.+...+...+++.+..| +++
T Consensus       263 ~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~  338 (394)
T PRK10213        263 IASFVGTSLSSFILKRSV-KLALAGAPLVLAVSA--LVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQA  338 (394)
T ss_pred             HHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccH
Confidence            344566788899999954 444444444332211  1111113567788889999999999888877877877765 567


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHHH
Q 012075          149 GTYISIFWSIFNMGGVIGGLIPFI  172 (471)
Q Consensus       149 G~~~g~~~~~~~~G~~iG~~i~~~  172 (471)
                      ++..+++....++|..+|+.++..
T Consensus       339 ~~~~~~~~~~~~lg~~~G~~l~G~  362 (394)
T PRK10213        339 EKAGSIQVAVIQLANTCGAAIGGY  362 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888888889999999998733

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.74  E-value=0.00044  Score=70.38  Aligned_cols=116  Identities=11%  Similarity=0.124  Sum_probs=81.6

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +..+.++......++..++++..|++.||  +|||+....+..++. ++.+.+.  .  .            . ..  .+
T Consensus        36 s~~~~g~l~s~~~~g~~i~~~~~g~l~~r--~G~r~~~~~g~~l~~-~g~~l~~--~--~------------~-~~--~~   93 (410)
T TIGR00885        36 TAFQAALVQSAFYGGYFIMAIPAAIFMKK--LSYKAGILLGLFLYA-LGAFLFW--P--A------------A-EI--MN   93 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHH-HHHHHHH--H--H------------H-hh--cc
Confidence            33456777788899999999999999999  899998877765552 2222211  0  0            0 01  23


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +...++..++.|++.+..++....++.+..+ ++++++..++.+...++|..++..+.+
T Consensus        94 ~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        94 YTLFLVGLFILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666677888888888877777877763 344578889999999999998877654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.73  E-value=0.00028  Score=81.42  Aligned_cols=117  Identities=12%  Similarity=0.016  Sum_probs=87.1

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh-----------------hcccchHHHHH
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYY-----------------NHHKHQAFAIA  119 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~-----------------~~~~~~~~li~  119 (471)
                      +...+...+....+..++.++.+.++++.++++.+..+.++..+........                 ...++.+.+++
T Consensus       260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (1140)
T PRK06814        260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI  339 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence            3444555566667778888999999988887766655554443322211110                 01256778888


Q ss_pred             HHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          120 AGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       120 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      +-++.|++.+...+...+++.+.+|+++||+.+|.++...++|..+|+++...+
T Consensus       340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888899999999999999999999999999999999886333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00046  Score=70.66  Aligned_cols=136  Identities=13%  Similarity=0.015  Sum_probs=75.8

Q ss_pred             HHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhc-cc-c-hHH---HHHHHHHHhhhhhHH-Hhhhhhhhcc
Q 012075           69 TTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNH-HK-H-QAF---AIAAGAILGIGAGLL-WAAEGAIMTS  141 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~-~~-~-~~~---li~~r~l~G~g~g~~-~~~~~~~i~~  141 (471)
                      ....+..+.++.+.||+|||+.++++..+..+.......... .. . .|.   .+++-++..++.+.. -+...-+.+|
T Consensus       316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE  395 (485)
T KOG0569|consen  316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE  395 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence            334456788999999999999999998765443222111000 11 1 221   233333333333322 2345677899


Q ss_pred             CCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCc
Q 012075          142 YPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGR  210 (471)
Q Consensus       142 ~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~  210 (471)
                      .+|++.|..++++-.+..-+..++=...-.-+..      .+....++.|.+..++..+..+...|+.+
T Consensus       396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~------~~g~~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  396 LFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN------VIGPYVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             hCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchhhHHHHHHHHHHHHHHHHhCcccC
Confidence            9999999999988776665555432221111111      12224456666666655555555556543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.71  E-value=0.0009  Score=67.82  Aligned_cols=97  Identities=15%  Similarity=0.076  Sum_probs=58.9

Q ss_pred             HHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHH----HHHhhhhhHHHhhhhhhhccCCC
Q 012075           70 TFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHH-KHQAFAIAAG----AILGIGAGLLWAAEGAIMTSYPP  144 (471)
Q Consensus        70 ~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~-~~~~~li~~r----~l~G~g~g~~~~~~~~~i~~~~~  144 (471)
                      ...++.++++++.||+|||+.+.++.++..+........+.. ++.+.++++-    +..|++.+...+....++.+..|
T Consensus       258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  337 (402)
T PRK11902        258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS  337 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            356778999999999999998887776554432222221222 3455554444    45566666666667777777666


Q ss_pred             CCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          145 PNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       145 ~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .++++    ++.....+|..+++.++
T Consensus       338 ~~~~~----~~~~~~~l~~~~~~~~~  359 (402)
T PRK11902        338 ATQYA----LLSALASVGRVYVGPTS  359 (402)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHH
Confidence            55554    44444456665444444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.70  E-value=0.00031  Score=66.67  Aligned_cols=109  Identities=17%  Similarity=0.240  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhccc--chHHHHHHHHHHhhhhhHHHhhhhh
Q 012075           60 ANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHK--HQAFAIAAGAILGIGAGLLWAAEGA  137 (471)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~--~~~~li~~r~l~G~g~g~~~~~~~~  137 (471)
                      .....+.......+++++.|.+.||+|||+.+..+...+.+.....   ....  +.+.+++.|++.|++.+...+....
T Consensus        41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  117 (338)
T COG0477          41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL---ALAPNVGLALLLILRLLQGLGGGGLLPVASA  117 (338)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH---HhCccchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3445555666666777999999999999988888876533321111   1223  4789999999999999999999999


Q ss_pred             hhccCCCC-CchhhHHHHHHH-HHHhhhhhhhHHHH
Q 012075          138 IMTSYPPP-NRKGTYISIFWS-IFNMGGVIGGLIPF  171 (471)
Q Consensus       138 ~i~~~~~~-~~RG~~~g~~~~-~~~~G~~iG~~i~~  171 (471)
                      ++.|..|+ ++|+...+.... ....|.++++.++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477         118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999887 789999999888 57888888886653

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.69  E-value=0.00024  Score=72.02  Aligned_cols=94  Identities=23%  Similarity=0.381  Sum_probs=78.8

Q ss_pred             hhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHH
Q 012075           74 FGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYIS  153 (471)
Q Consensus        74 ~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g  153 (471)
                      .=++.+++.+|+|+-+++.++..++.+   =+++.+..+|.|+.+..-+++|+..+..|.+..+|++..+||+.|..+.+
T Consensus       422 ~~ffs~klI~kiGHv~v~~lgLa~~~~---Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~  498 (618)
T KOG3762|consen  422 FYFFSFKLIEKIGHVNVMYLGLACNVG---RFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQG  498 (618)
T ss_pred             HHHHHHHHHHHhcccceeeehhhHHHH---HHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence            336788999999999999999887653   23333446899999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HhhhhhhhHHH
Q 012075          154 IFWSIF-NMGGVIGGLIP  170 (471)
Q Consensus       154 ~~~~~~-~~G~~iG~~i~  170 (471)
                      +.+... .+|--+|.+|+
T Consensus       499 l~~g~f~GlG~g~GslIG  516 (618)
T KOG3762|consen  499 LLQGIFHGLGKGLGSLIG  516 (618)
T ss_pred             HHHHHhcccCcchhhhhh
Confidence            988654 46667777776

>TIGR00788 fbt folate/biopterin transporter

Probab=97.64  E-value=0.00046  Score=71.56  Aligned_cols=117  Identities=12%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh----h---cccchHHHHHHHHHHhhhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYY----N---HHKHQAFAIAAGAILGIGAG  129 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~----~---~~~~~~~li~~r~l~G~g~g  129 (471)
                      +...+...+..-.+..++..+.+.+.+|++.|+.+.++.+++.+........    +   ..++.+.++..-++.+++.+
T Consensus       287 ~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g  366 (468)
T TIGR00788       287 PSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ  366 (468)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH
Confidence            3333333334345555667788888899999999999998776522111100    0   01334466777889999999


Q ss_pred             HHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          130 LLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       130 ~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ..+++...++.+.+|++++|...+++.+..++|..+|+.++..+
T Consensus       367 ~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       367 LKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             HHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.63  E-value=8e-05  Score=72.42  Aligned_cols=155  Identities=19%  Similarity=0.200  Sum_probs=85.9

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhH
Q 012075          274 RGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGP  353 (471)
Q Consensus       274 ~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (471)
                      .++..-.+++++++.++..|.++||  .|||+.++.+.... .+....|+  .                  .  .++. .
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~--yGRkpvll~c~~~v-a~s~ll~~--~------------------S--~~F~-a  123 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDR--YGRKPVLLACLIGV-ALSYLLWA--L------------------S--RNFA-A  123 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhh--hCchHHHHHHHHHH-HHHHHHHH--H------------------H--HHHH-H
Confidence            4566677899999999999999999  89999887665433 22222222  0                  0  2332 2


Q ss_pred             HHH-HHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhHHH----------HHHHH
Q 012075          354 FVL-YFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQL----------VVNWS  422 (471)
Q Consensus       354 ~~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~~~----------~~~~~  422 (471)
                      ++. =++.|.+.+.. +++-++++|+.++ ++++.+++....--++|..++-.++.    |..++          ..++.
T Consensus       124 fv~aR~l~Gi~kgnl-~v~rAiisdV~se-k~r~l~ms~v~~a~~lGfilGPmIGg----yla~f~~~~g~~p~alP~~~  197 (451)
T KOG2615|consen  124 FVLARFLGGIFKGNL-SVIRAIISDVVSE-KYRPLGMSLVGTAFGLGFILGPMIGG----YLAQFSSISGSYPFALPCLL  197 (451)
T ss_pred             HHHHHHhhhhccCch-HHHHHHHHhhcCh-hhccceeeeeehhhhcchhhcchhhh----HHHhhHhhhccCchHHHHHH
Confidence            222 34556665544 4567899999944 45577777554433444443333332    22221          11233


Q ss_pred             HHHhhhhhhhheeeeeeccCCCccCccccccCcC-CCCCCC
Q 012075          423 LTTISYPLLVILVLLAVKDEKSPEESTNSKEVTL-PAADDG  462 (471)
Q Consensus       423 ~~~~~~~~~i~~~~~~~pet~~~~~~~~~~~~~~-~~~~~~  462 (471)
                      .++... .-+.+..+++|||...+|.. ++|.+. |++||.
T Consensus       198 v~i~a~-~~v~~~~~~lpETL~~rk~~-~~~~~~~~~~~~~  236 (451)
T KOG2615|consen  198 VFILAA-GDVTFFPWFLPETLPLRKRN-DEHSTLQEAADDR  236 (451)
T ss_pred             HHHHHH-HHHHHHHHhCCccccchhhc-ccccchhhhhhhh
Confidence            322222 22344557889996665555 555533 334443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.0038  Score=58.09  Aligned_cols=71  Identities=24%  Similarity=0.473  Sum_probs=52.4

Q ss_pred             hhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh-hhhhhccCCCCCchhh
Q 012075           74 FGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA-EGAIMTSYPPPNRKGT  150 (471)
Q Consensus        74 ~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~-~~~~i~~~~~~~~RG~  150 (471)
                      ...+.|.++|+-|||+..+.-++.|.+   +++. -.++.+-.++++|++.|++.+.+..+ ..=+++|.  .++||.
T Consensus        88 FGtivgSLaDkqGRKracvtycitYiL---sCiT-KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEH--nekr~F  159 (454)
T KOG4332|consen   88 FGTIVGSLADKQGRKRACVTYCITYIL---SCIT-KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEH--NEKRGF  159 (454)
T ss_pred             HHHHHHHHHhhhccccceeeehHHHHH---HHHh-hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHh--hhccCC
Confidence            346788999999999998888877754   4443 23567778999999999999998665 45556664  344543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.62  E-value=0.00027  Score=70.32  Aligned_cols=112  Identities=15%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCC-
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGS-  348 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  348 (471)
                      +..+.++......++..++.++.|++.||  +|||+...++...+.+ ......  .  .                  + 
T Consensus        35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~i-~~~~~~--~--~------------------~~   89 (366)
T TIGR00886        35 STAQLGNLVAVPVLAGAVLRIILGFLVDK--FGPRYTTTLSLLLLAI-PCLWAG--L--A------------------VQ   89 (366)
T ss_pred             CHHHhhHhhHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHH-HHHHHH--H--H------------------hh
Confidence            44456677778899999999999999999  8999977766554422 111111  0  0                  1 


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          349 DFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       349 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ++....+..++.|++.+.+ +....++.+.++ +++++++.++.....++|..++..+.+
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            2333455566677765554 345567788874 345688888888777788877766554

>PRK11462 putative transporter; Provisional

Probab=97.61  E-value=0.0011  Score=68.70  Aligned_cols=102  Identities=9%  Similarity=0.028  Sum_probs=63.0

Q ss_pred             HHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC---
Q 012075           68 YTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP---  144 (471)
Q Consensus        68 ~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~---  144 (471)
                      .....++.+++++++||+|+|+.+..+.....+....... ...++...+++.-++.|++.+...+...+.++|..+   
T Consensus       273 ~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e  351 (460)
T PRK11462        273 CVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF-VPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGE  351 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence            3444566789999999999999877555433221111111 112233344555567788877766655666676655   


Q ss_pred             ----CCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          145 ----PNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       145 ----~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                          .++.|...+.+.....+|..+|+.+.
T Consensus       352 ~~tG~r~~g~~~a~~~f~~Klg~alg~~i~  381 (460)
T PRK11462        352 WCNGKRLTGISFAGTLFVLKLGLAFGGALI  381 (460)
T ss_pred             HhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence                33345556777777888888887765

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.60  E-value=0.0011  Score=68.06  Aligned_cols=118  Identities=15%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             cccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCC
Q 012075          269 FNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGS  348 (471)
Q Consensus       269 ~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (471)
                      ++..+.++......++..++.+..|++.||  +|.|+...++.+...+ ..+...  +..+            +. .  +
T Consensus        67 ls~~q~g~l~ai~~l~~al~rip~G~l~Dr--~G~R~v~~~~~ll~~i-~~~~~~--~a~~------------~~-~--~  126 (462)
T PRK15034         67 FTTDQLFLLTALPSVSGALLRVPYSFMVPI--FGGRRWTVFSTAILII-PCVWLG--IAVQ------------NP-N--T  126 (462)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHH-HHHHHH--HHHc------------cc-C--C
Confidence            344455666666677777888888999999  7888866655544321 111111  1100            11 1  3


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          349 DFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       349 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      ++...+++.++.|+..+ ..+.....+++.++ +++++++.|++....++|..+...+.+
T Consensus       127 s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp-~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        127 PFGIFIVIALLCGFAGA-NFASSMGNISFFFP-KAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             CHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCC-HhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45567778888888744 44555567888884 455699999987777777776665543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.52  E-value=0.00058  Score=71.38  Aligned_cols=98  Identities=11%  Similarity=0.040  Sum_probs=72.8

Q ss_pred             hhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh-c-----ccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCC
Q 012075           73 IFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN-H-----HKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPN  146 (471)
Q Consensus        73 i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~-~-----~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~  146 (471)
                      +...+++++.+|++++..+.+|.++..+......... .     .-|.+.++...++.|+|.....+....++.+.+|++
T Consensus       335 ~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~  414 (500)
T PRK09584        335 ILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR  414 (500)
T ss_pred             HHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH
Confidence            3345567778888777778887766554322211100 0     013567899999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhhhhhhhHHH
Q 012075          147 RKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       147 ~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      .||+.+|.+.....+|+.++..+.
T Consensus       415 ~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        415 LMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888878887776665

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.46  E-value=0.0026  Score=63.75  Aligned_cols=62  Identities=11%  Similarity=-0.055  Sum_probs=47.3

Q ss_pred             cchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          112 KHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       112 ~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ++.+..++.-.+.|++....++....+.+|..|++.||+.+|+.+..-++|.+.+|.+...+
T Consensus       278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~  339 (368)
T TIGR00903       278 LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF  339 (368)
T ss_pred             cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence            33444444555666766666666778899999999999999999999999998888876333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.45  E-value=0.0011  Score=69.03  Aligned_cols=100  Identities=14%  Similarity=0.176  Sum_probs=73.9

Q ss_pred             HhhhchhhhhhhccchhHH-------HHHHHHHHHHHHH-----HHHhhhc--ccchHHHHHHHHHHhhhhhHHHhhhhh
Q 012075           72 TIFGILGGGIYNILGPQVT-------LISACSTYVLYAG-----SFLYYNH--HKHQAFAIAAGAILGIGAGLLWAAEGA  137 (471)
Q Consensus        72 ~i~~~~~g~l~d~~Grk~~-------l~i~~~~~~~~~~-----~~~~~~~--~~~~~~li~~r~l~G~g~g~~~~~~~~  137 (471)
                      .+.+++.+++.||+|||+.       +.+|.++..+...     .......  ..+.+.++..-++.|+|.+...+....
T Consensus       323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~  402 (489)
T PRK10207        323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLA  402 (489)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3455667899999998863       4455443222111     0111111  135677888999999999999999999


Q ss_pred             hhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          138 IMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       138 ~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      ++.+.+|++.+|.++|+++...++|..+|..++.
T Consensus       403 ~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~  436 (489)
T PRK10207        403 MIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT  436 (489)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988863

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.44  E-value=0.00064  Score=70.36  Aligned_cols=117  Identities=14%  Similarity=0.121  Sum_probs=72.2

Q ss_pred             cccchhhhHHHHHHHHHHHHhhhhhhhcccCCC-CccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCC
Q 012075          269 FNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFP-TRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG  347 (471)
Q Consensus       269 ~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~-gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (471)
                      ++..+.+.....+.....++.+++|+++||  + |||+..++|.+.+. ++....    ..    .        + ..  
T Consensus        42 ls~~~a~~i~~~~~~~~~l~~ligG~LaDR--ilGrrr~iliG~il~~-lg~lll----~~----~--------~-~~--   99 (493)
T PRK15462         42 YDDNHAYELFSAYCSLVYVTPILGGFLADK--VLGNRMAVMLGALLMA-IGHVVL----GA----S--------E-IH--   99 (493)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcHHHHHHHHHHHH-HHHHHH----HH----h--------h-cc--
Confidence            344445566667778888899999999999  6 99998777765542 222111    00    0        0 00  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          348 SDFAGPFVLYFCYGLLDAMFQSMVYWVIGALAD-DSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       348 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      ...  ..+...+..++.+...+....+++|+++ +++++.++++++....++|..++..+...
T Consensus       100 ~~~--~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~  160 (493)
T PRK15462        100 PSF--LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY  160 (493)
T ss_pred             hhH--HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence            111  1222223334455555666778999993 33345788999999888888888776543

>PRK10133 L-fucose transporter; Provisional

Probab=97.43  E-value=0.0057  Score=62.82  Aligned_cols=110  Identities=12%  Similarity=-0.019  Sum_probs=74.3

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++............+..+++++.+++.||+|||+.+..+.++-.+......   ..++.+ .+..=++.|++.+..++.
T Consensus       292 ~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~---~~~~~~-~~~~~~l~glg~~~i~P~  367 (438)
T PRK10133        292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA---FAGGHV-GLIALTLCSAFMSIQYPT  367 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCChH-HHHHHHHHHHHHHHHHHH
Confidence            3455556666777777889999999999999999998888765443222211   123332 245567899999999988


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ..+...+..+ ++.+.+.++..... +|..++|.+.
T Consensus       368 ~~s~a~~~~~-~~~~~as~l~~~~~-~g~~~~~~i~  401 (438)
T PRK10133        368 IFSLGIKNLG-QDTKYGSSFIVMTI-IGGGIVTPVM  401 (438)
T ss_pred             HHHHHHcccc-hhhccchhHHhHHh-ccchHHHHHH
Confidence            8877777644 45677777775433 5555555543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.0054  Score=59.68  Aligned_cols=163  Identities=10%  Similarity=0.013  Sum_probs=98.5

Q ss_pred             cCCcccccccccccccccccc-hhHHHHHHHHHHhhhhhhhHhhhhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhh
Q 012075            4 RGESAGKQQMVVGKSRFRYNS-PLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIY   82 (471)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~   82 (471)
                      |...++.+...+++.+-|.++ .|...+..++-+++......=+..+-.+..-+.+..+..++.........++..+.+.
T Consensus       188 r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la  267 (395)
T COG2807         188 REQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLA  267 (395)
T ss_pred             cccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333455555555544444444 5777888888776554433222222111112344455566677777788889999999


Q ss_pred             hcc-chhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCC-CCCchhhHHHHHHHHHH
Q 012075           83 NIL-GPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYP-PPNRKGTYISIFWSIFN  160 (471)
Q Consensus        83 d~~-Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~RG~~~g~~~~~~~  160 (471)
                      +|. .+|+..+...+.+.+...++.+   .+....++- -++.|+|.|...+.+-..+.+-+ ++++-++..|+-|..-.
T Consensus       268 ~R~~n~r~~~~~~~~~~l~G~~G~~~---~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GY  343 (395)
T COG2807         268 RRSKNQRPLVVLALLLMLVGLVGLLL---APGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGY  343 (395)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHH---hhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhH
Confidence            964 4677777776666554444433   222222222 49999999998877776665544 57777888888776555


Q ss_pred             hhhhhhhHHH
Q 012075          161 MGGVIGGLIP  170 (471)
Q Consensus       161 ~G~~iG~~i~  170 (471)
                      +=..+||++.
T Consensus       344 llAa~GP~l~  353 (395)
T COG2807         344 LLAAFGPWLF  353 (395)
T ss_pred             HHHhhhhhhH
Confidence            5556677765

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.30  E-value=0.002  Score=66.99  Aligned_cols=60  Identities=15%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             cchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHH
Q 012075          112 KHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       112 ~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~  171 (471)
                      .|.+.+++..++.|+|.....+....++++.+|++.||+++|++.....+|..+|+.+..
T Consensus       379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~  438 (475)
T TIGR00924       379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT  438 (475)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999988764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.25  E-value=0.0022  Score=68.90  Aligned_cols=133  Identities=17%  Similarity=0.093  Sum_probs=85.6

Q ss_pred             chhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCC---------C---C--
Q 012075          272 RTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHD---------K---P--  337 (471)
Q Consensus       272 ~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~--  337 (471)
                      .+.++....+.++..++.++.+++.||  .|||+.+.+|.++++ ++.++++....+..+|..+         +   .  
T Consensus        68 ~~~G~i~s~~~i~~~~~~i~v~~~~~r--~~r~~~i~~g~ll~~-lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~  144 (633)
T TIGR00805        68 SSSGLINGSYEIGNLLLIIFVSYFGTK--LHRPIVIGIGCAIMG-LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFL  144 (633)
T ss_pred             CcceeeeehhhHHHHHHHHHHHHhhcc--cCcceEEEecHHHHH-HHHHHHhChHHhcCCcccccccccccccccccccc
Confidence            356677777889999999999999999  789998888876663 3333332111111111100         0   0  


Q ss_pred             ------C---Cc----cCCCCC--CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 012075          338 ------P---AK----LDFKNS--GSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAV  402 (471)
Q Consensus       338 ------~---~~----~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i  402 (471)
                            +   +.    ....+.  ...+...++.-++.|++.+...+....+++|.++ +++++.+.+++.....+|.++
T Consensus       145 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~-~~~~~~~~~i~~~~~~iG~~l  223 (633)
T TIGR00805       145 CMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK-SKNSPLYIGILESIAVFGPAF  223 (633)
T ss_pred             ccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC-ccccHHHHHHHHHHHHhhhHH
Confidence                  0   00    000000  0123345567788899998888888889999984 345689999999999999999


Q ss_pred             Hhhhcc
Q 012075          403 AWQVDT  408 (471)
Q Consensus       403 ~~~~~~  408 (471)
                      ++.+..
T Consensus       224 G~llgg  229 (633)
T TIGR00805       224 GYLLGS  229 (633)
T ss_pred             HHHHHH
Confidence            988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.25  E-value=0.084  Score=54.35  Aligned_cols=147  Identities=10%  Similarity=0.044  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhhhhhhHhhhhcCCCCCC---Ch--hhhhHHHHHHHHHHHhh-hchhhhhhhccchhHHHHHHHHHHHHH
Q 012075           28 QVCLIGLVCFCCPGMFNALSGMGGGGQV---DT--TAANNANTALYTTFTIF-GILGGGIYNILGPQVTLISACSTYVLY  101 (471)
Q Consensus        28 ~~~~~~~~~f~~~~~~~~~~~l~~~~~~---~~--~~~~~~~~~~~~~~~i~-~~~~g~l~d~~Grk~~l~i~~~~~~~~  101 (471)
                      .++.+++.+|+....|+.+-.+-.....   +.  +.....-.......++. .++-+++++|++|++.+-+....|..+
T Consensus         8 k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~   87 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGF   87 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHH
Confidence            4566777777777677766544332111   11  11111111111222222 466789999999999988877666554


Q ss_pred             HHHHHhh---hc--c-c----------------------chHHHHHHHHHHhhhhhHHHh-hhhhhhccCCCCCchhhHH
Q 012075          102 AGSFLYY---NH--H-K----------------------HQAFAIAAGAILGIGAGLLWA-AEGAIMTSYPPPNRKGTYI  152 (471)
Q Consensus       102 ~~~~~~~---~~--~-~----------------------~~~~li~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~RG~~~  152 (471)
                      .+.+...   ..  . +                      +.|..-+.-+..-+-...... .--.++.|+.+++|-.|..
T Consensus        88 f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy  167 (472)
T TIGR00769        88 FALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFY  167 (472)
T ss_pred             HHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4432221   10  0 0                      122211112222222222211 2345678999999999999


Q ss_pred             HHHHHHHHhhhhhhhHHHHHhh
Q 012075          153 SIFWSIFNMGGVIGGLIPFILN  174 (471)
Q Consensus       153 g~~~~~~~~G~~iG~~i~~~~~  174 (471)
                      +++..+-++|.++|+.+...+.
T Consensus       168 ~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       168 ALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997764443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PTZ00207 hypothetical protein; Provisional

Probab=97.24  E-value=0.0045  Score=65.41  Aligned_cols=94  Identities=15%  Similarity=0.162  Sum_probs=61.6

Q ss_pred             HhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHH
Q 012075          288 GSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMF  367 (471)
Q Consensus       288 g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  367 (471)
                      ..++.|++.||  +|||+.+.++.+... ++.+...  .  .  ++        +...  ++++..++..++.|++.+..
T Consensus        77 ~~lp~G~L~Dr--~G~R~vllig~ll~~-iG~ll~a--l--a--~~--------~~i~--~s~~~l~l~r~l~G~G~~~~  137 (591)
T PTZ00207         77 FLLPYSFIYDY--LGPRPIFVLSMTVFC-LGTLLFA--L--T--FQ--------EVIE--GSVVRLSVYNGLMTLGCMLF  137 (591)
T ss_pred             HHHHHHHHHHH--hCcHHHHHHHHHHHH-HHHHHHH--H--H--hc--------cccc--CcHHHHHHHHHHHHHHHHHH
Confidence            44567999999  899998887766552 2222221  1  1  00        1111  23444555666778887777


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 012075          368 QSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAV  402 (471)
Q Consensus       368 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i  402 (471)
                      .+.....+.+.|+  ++++++.|+.+...++|.++
T Consensus       138 ~~~~~~~i~~~Fp--~~RG~a~Gi~~~~~gLGsaI  170 (591)
T PTZ00207        138 DLGAVVTVLSVFP--SNRGAVVAIMKTFTGLGSAI  170 (591)
T ss_pred             HHHHHHHHHHhCh--hhhHHHHHHHHHHHHHHHHH
Confidence            7776767788884  45599999999999888875

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.0033  Score=65.51  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=87.5

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccch--hHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGP--QVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr--k~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      +.......++++-....++.++.|+++|+...  +....++.++-.+  .. .....+++++.++...++.|+..|....
T Consensus       331 ~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl--~~-~~~p~~~~~~~l~~~~~~fG~~~g~~~~  407 (509)
T KOG2504|consen  331 SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL--AR-LFLPFATTYVGLIVFSILFGFCVGSFSS  407 (509)
T ss_pred             ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH--HH-HHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666677788999999999993  3344444433322  22 2224568899999999999999999988


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ..+.++.|+...++-..+.|+......++.++||.+.
T Consensus       408 l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPia  444 (509)
T KOG2504|consen  408 LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIA  444 (509)
T ss_pred             HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccc
Confidence            8888999999999999999999999999999999987

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.0052  Score=63.63  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=89.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHH
Q 012075          275 GLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPF  354 (471)
Q Consensus       275 ~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
                      +.....+.++.+++-++++.+.||  +.    +..+...+.    +.|+....+..            +.   .+++...
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r--~~----ls~~l~~~~----~~w~~~~~~~~------------~~---~s~~~~i  138 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDR--FP----LSKGLSVSG----ILWGLFGFLTA------------AV---HSFPGLI  138 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHh--CC----hHHHHHHHH----HHHHHHHHHHH------------HH---hhhHHHH
Confidence            344566788888999999999999  44    111222221    11111000110            10   2333457


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCch---hhHHHHHHHH--HHHhhhh
Q 012075          355 VLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVS---LLSQLVVNWS--LTTISYP  429 (471)
Q Consensus       355 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p---~~~~~~~~~~--~~~~~~~  429 (471)
                      +.-++.|++.++..|..-.+++..|.+ ++++.-+|++...+++|..++-++++....   .....+-.|.  +-++..+
T Consensus       139 alr~llGl~es~~wP~~~~~lg~wy~~-~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~  217 (495)
T KOG2533|consen  139 ALRFLLGLFESGGWPGVVAILGNWYGK-SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITL  217 (495)
T ss_pred             HHHHHHHHHhcccchHHHHHHHhhcCh-hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHH
Confidence            778899999999999988899999943 456899999998888888888776643100   0000111222  2222223


Q ss_pred             hhhheeeeeeccCCCccCcccccc
Q 012075          430 LLVILVLLAVKDEKSPEESTNSKE  453 (471)
Q Consensus       430 ~~i~~~~~~~pet~~~~~~~~~~~  453 (471)
                      ...+++++++|+-.++.+...++|
T Consensus       218 ~~gi~~f~~lp~~P~~~~fl~~~e  241 (495)
T KOG2533|consen  218 VLGIVVFFFLPDNPSKAWFLTDEE  241 (495)
T ss_pred             HHHheEEEEecCChhhccccchHH
Confidence            344557788888766555555444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.04  E-value=0.026  Score=56.12  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             chhhhhh-hccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHH
Q 012075           76 ILGGGIY-NILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISI  154 (471)
Q Consensus        76 ~~~g~l~-d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~  154 (471)
                      ...+.+. .+.+.|+.-.+++..-.+........+..++.+.+..+-++.|+|.|...++.-+.+.+.+++++-|..+|.
T Consensus       262 ~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~  341 (403)
T PF03209_consen  262 LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGA  341 (403)
T ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHH
Confidence            3445444 477777777777765444333333334456889999999999999999999988889999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHH
Q 012075          155 FWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       155 ~~~~~~~G~~iG~~i~~  171 (471)
                      +.....+..-+|..++.
T Consensus       342 WGaaQA~A~Glg~~~GG  358 (403)
T PF03209_consen  342 WGAAQAIARGLGTFLGG  358 (403)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888877777766653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0016  Score=64.45  Aligned_cols=153  Identities=15%  Similarity=0.080  Sum_probs=90.7

Q ss_pred             ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCC
Q 012075          268 QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG  347 (471)
Q Consensus       268 ~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (471)
                      +++..+.++......+...+..++.|++.||  +|-|+....+.+++.+-   ++....+.               ..  
T Consensus        45 ~LS~~q~~ll~aiPil~GallRl~~g~l~dr--fGgR~~~~~s~~l~~IP---~~~~~~a~---------------~~--  102 (417)
T COG2223          45 GLSEGQKGLLVAIPILVGALLRLPYGFLTDR--FGGRKWTILSMLLLLIP---CLGLAFAV---------------TY--  102 (417)
T ss_pred             CCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc--cCchHHHHHHHHHHHHH---HHHHHHHc---------------cC--
Confidence            3455567777777778888889999999999  66666554444433211   11111111               11  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhH--HHHHHHHHHH
Q 012075          348 SDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLS--QLVVNWSLTT  425 (471)
Q Consensus       348 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~--~~~~~~~~~~  425 (471)
                      ++++..+++.++.|+..+.+-.-+ ..+++.|+ +++++.+.|++- ..++|.++.-++.|.......  .......++.
T Consensus       103 ~~~~~ll~~gll~G~~GasFav~m-~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~  179 (417)
T COG2223         103 PSTWQLLVIGLLLGLAGASFAVGM-PNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYV  179 (417)
T ss_pred             CchHHHHHHHHHHhcccceehccc-ccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            334556777788888777665433 35777774 567799999888 889999999888774311111  0111222333


Q ss_pred             hhhhhhhheeeeeeccCCCc
Q 012075          426 ISYPLLVILVLLAVKDEKSP  445 (471)
Q Consensus       426 ~~~~~~i~~~~~~~pet~~~  445 (471)
                      ..++......++.+.|..|+
T Consensus       180 ~~l~v~~v~~~~~~~d~p~~  199 (417)
T COG2223         180 VALAIAAVLAWLGMNDVPEH  199 (417)
T ss_pred             HHHHHHHHHHHHHhCCChhh
Confidence            33333334455665555554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.81  E-value=0.015  Score=54.63  Aligned_cols=117  Identities=14%  Similarity=0.020  Sum_probs=66.4

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +.++.........+|.-+| ++.|.+.|+  .|.+..+++|.+.. .++....- ..     +.+       ....  +.
T Consensus        35 sq~~l~~l~~~~~~G~~~G-~~~G~l~d~--~gp~~~l~iG~~~~-~~GY~~~~-l~-----~~~-------~i~~--~~   95 (250)
T PF06813_consen   35 SQSQLNTLSTAGDIGSYFG-ILAGLLYDR--FGPWVVLLIGAVLG-FVGYGLLW-LA-----VSG-------RIPS--LP   95 (250)
T ss_pred             CHHHHHHHHHHHHHHhhcc-HHHHHHHHh--cchHHHHHHHHHHH-HHHHHHHH-HH-----HhC-------ccCc--cc
Confidence            3333344455667777775 678999999  78887777776544 23322211 11     111       1111  34


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ++..++..++.+.+.+..++......-+-|  |++|+++.|+.+.+..+++++--.+.
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF--P~~RG~vvgilk~~~GLSaai~t~i~  151 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNF--PRSRGTVVGILKGFFGLSAAIFTQIY  151 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhC--ccccCceehhhhHHHHhHHHHHHHHH
Confidence            444444434444444444454433344556  34568999999999988888765543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.77  E-value=7.3e-05  Score=76.91  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHH
Q 012075          275 GLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPF  354 (471)
Q Consensus       275 ~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
                      ++......++.++|+++.|.+.||  +|||+....+...+. ++.+..+        +.+       + .   .++....
T Consensus        49 ~~~~~~~~~g~~~G~~~~g~~~d~--~GRk~~~~~~~~~~~-i~~~~~~--------~~~-------~-~---~~~~~~~  106 (451)
T PF00083_consen   49 SLLTSSFFIGAIVGALIFGFLADR--YGRKPALIISALLMI-IGSILIA--------FAP-------S-Y---NNFWMLL  106 (451)
T ss_pred             HHHHHHHHhhhccccccccccccc--ccccccccccccccc-ccccccc--------ccc-------c-c---ccccccc
Confidence            455667889999999999999999  899998877765542 1111110        110       0 0   0233345


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          355 VLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       355 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      +.-++.|++.+...+....++.|..++ +++++..+..+....+|..++..++.
T Consensus       107 ~~R~~~G~~~g~~~~~~~~~~~E~~~~-~~R~~~~~~~~~~~~~G~~~~~~~~~  159 (451)
T PF00083_consen  107 IGRFLIGFGIGGAYVVSPIYISEIAPP-KHRGFLSSLFQLFWALGILLASLIGY  159 (451)
T ss_pred             ccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            556678888888888888889999843 34467777777766667666666543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.76  E-value=0.0062  Score=63.93  Aligned_cols=109  Identities=18%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHH
Q 012075          275 GLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPF  354 (471)
Q Consensus       275 ~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
                      ++......++..++.++.|+++|+  +|||+.++.+.+.. .++.++.+    ..                  .++....
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~--~GRk~~l~~~~~~~-~iG~ii~~----~a------------------~~~~~l~  146 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDR--IGRKKTLLLAVVLF-LIGAIIIA----LA------------------PSWYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHH-HHHHHHHH----Hh------------------hhHHHHH
Confidence            577778899999999999999999  89999777665443 22222211    00                  2233467


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          355 VLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       355 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      +.=++.|++.+........+++|+.+ ++.|+...+.++....+|..+++..+..
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEiap-~~~RG~l~~~~~l~~~~Gi~~~~~~~~~  200 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIAP-AHIRGTLVSLYQLFITIGILLGYCINYG  200 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcCC-hhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77788899888888888888999984 3345788888888888999999877653

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.76  E-value=0.027  Score=57.56  Aligned_cols=115  Identities=9%  Similarity=-0.041  Sum_probs=78.9

Q ss_pred             ccccch-hhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCC
Q 012075          268 QFNLRT-RGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNS  346 (471)
Q Consensus       268 ~~~~~~-~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (471)
                      +++..+ .+...-.+..+..+..++.|.+.||  +|-|+.+..+.+...++ .++.                   .+.  
T Consensus        57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDr--lG~K~vL~l~~l~Wsl~-t~L~-------------------~fa--  112 (511)
T TIGR00806        57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY--LRYKPVLVLQALSFVCV-WLLL-------------------LLG--  112 (511)
T ss_pred             CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHH-HHHH-------------------HHH--
Confidence            344444 5666666778888888889999999  77777554443322111 1111                   111  


Q ss_pred             CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          347 GSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       347 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                       .+.....++=+++|++.+... ..+.++...++ +++++++.+..+.-..+|.+++..+...
T Consensus       113 -~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       113 -TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             123346777788999988888 77778888884 5677999999999999999998876643

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.72  E-value=0.019  Score=60.62  Aligned_cols=103  Identities=20%  Similarity=0.181  Sum_probs=79.5

Q ss_pred             HHHHhhhchhhhhhhccch-hHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCc
Q 012075           69 TTFTIFGILGGGIYNILGP-QVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNR  147 (471)
Q Consensus        69 ~~~~i~~~~~g~l~d~~Gr-k~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~  147 (471)
                      .+..+++++.+.+..+++| |+.++++++.+.++.++... ...+|....++.-++.|+|.|...........-..|+++
T Consensus       360 fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~-~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~  438 (599)
T PF06609_consen  360 FGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA-VRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED  438 (599)
T ss_pred             HHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH-ccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence            3345667788888888886 77778888877766555433 234566667788999999999987666666666778999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhHHHHH
Q 012075          148 KGTYISIFWSIFNMGGVIGGLIPFI  172 (471)
Q Consensus       148 RG~~~g~~~~~~~~G~~iG~~i~~~  172 (471)
                      .|.++|+..+...+|..+|..+-..
T Consensus       439 ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  439 IGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999887543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.67  E-value=0.062  Score=56.48  Aligned_cols=98  Identities=10%  Similarity=0.012  Sum_probs=74.7

Q ss_pred             hhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccch-HHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHH
Q 012075           74 FGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQ-AFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYI  152 (471)
Q Consensus        74 ~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~-~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~  152 (471)
                      .....+...|++|||+.+..+.....+......... .... +...+...+..++.+..+.....+.+|+.|...|+.+.
T Consensus       366 ~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~  444 (521)
T KOG0255|consen  366 AYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLP-DDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAV  444 (521)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            335568999999999999999987655433333211 1122 35666777777777777777789999999999999999


Q ss_pred             HHHHHHHHhhhhhhhHHHHH
Q 012075          153 SIFWSIFNMGGVIGGLIPFI  172 (471)
Q Consensus       153 g~~~~~~~~G~~iG~~i~~~  172 (471)
                      +.......+|.+++|.+.+.
T Consensus       445 ~~~~~~~~~~~i~ap~~~~~  464 (521)
T KOG0255|consen  445 GAISAAARLGSILAPLFPLL  464 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998743

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.62  E-value=0.0099  Score=59.63  Aligned_cols=95  Identities=8%  Similarity=-0.060  Sum_probs=64.4

Q ss_pred             hhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHhhhhhH-HHhhhhhhhccCCCCCchhh
Q 012075           74 FGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHH--KHQAFAIAAGAILGIGAGL-LWAAEGAIMTSYPPPNRKGT  150 (471)
Q Consensus        74 ~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~--~~~~~li~~r~l~G~g~g~-~~~~~~~~i~~~~~~~~RG~  150 (471)
                      |-++...++|++|||++.+.|.++++++...... ...  .+..-+++.-.+..+..-+ .......+.+|++|.+-||.
T Consensus       364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~-~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t  442 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAG-PYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST  442 (538)
T ss_pred             ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcC-CcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence            4588999999999999999999988775443222 111  1122223333333333322 33455677899999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHH
Q 012075          151 YISIFWSIFNMGGVIGGLI  169 (471)
Q Consensus       151 ~~g~~~~~~~~G~~iG~~i  169 (471)
                      .-|+..+.--+|.++|...
T Consensus       443 ~hGIsAA~GK~GAivg~~~  461 (538)
T KOG0252|consen  443 CHGISAASGKAGAIVGAFG  461 (538)
T ss_pred             hhhHHHHhccchHHHHHHH
Confidence            9999988888888887653

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.57  E-value=0.48  Score=47.63  Aligned_cols=88  Identities=9%  Similarity=0.053  Sum_probs=52.5

Q ss_pred             hchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHH
Q 012075           75 GILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISI  154 (471)
Q Consensus        75 ~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~  154 (471)
                      .++++++.+|...+.-..+..++..   .+.+..+.++|.+.-+++-++.+++.|..-..--.+.+ ..++    ...+-
T Consensus        76 Kl~aP~fi~~v~y~~Ri~~~~~l~~---~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~  147 (402)
T PF02487_consen   76 KLIAPFFIHRVPYWIRILICVALSA---AGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSA  147 (402)
T ss_pred             HHHhHhhhhhccchHHHHHHHHHHH---HHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----ccccc
Confidence            3668888888764333333333332   33444455788888888888999888885544444433 2232    24566


Q ss_pred             HHHHHHhhhhhhhHHH
Q 012075          155 FWSIFNMGGVIGGLIP  170 (471)
Q Consensus       155 ~~~~~~~G~~iG~~i~  170 (471)
                      +.++...+.++|+..-
T Consensus       148 wssGTG~aGl~Ga~~y  163 (402)
T PF02487_consen  148 WSSGTGGAGLVGALYY  163 (402)
T ss_pred             ccCCcChhhHHHHHHH
Confidence            6555666667776654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.39  E-value=0.025  Score=57.84  Aligned_cols=154  Identities=13%  Similarity=0.091  Sum_probs=83.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhH
Q 012075          274 RGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGP  353 (471)
Q Consensus       274 ~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (471)
                      -|++.....++..++++++|.+..|.+-.||| +..|..++ +++.+++.   .+.  +.+         .   ...+..
T Consensus        73 fG~viaa~slg~~i~~liF~~Ws~k~~~~k~P-li~s~ii~-~~g~llY~---~l~--~~~---------~---~~~y~m  133 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP-LIVSFLIA-IIGNLLYL---ALA--YVP---------N---GVKYLM  133 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhcccccccCCcccC-HHHHHHHH-HHHHHHHH---HHH--hcc---------c---chHHHH
Confidence            35666678999999999999999884333555 44555544 44445542   111  110         1   122356


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccC----------ch-h-hHHHHH-H
Q 012075          354 FVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHK----------VS-L-LSQLVV-N  420 (471)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~----------~p-~-~~~~~~-~  420 (471)
                      +++.++.|++.+.... .-.+++.... .+++.++++...+-+.+|..++...++..          .| . .+++.. .
T Consensus       134 L~~R~l~Gvg~~n~a~-lR~Y~a~~s~-~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~  211 (488)
T KOG2325|consen  134 LVARILTGVGVGNFAV-LRAYIADAST-VEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPA  211 (488)
T ss_pred             HHHHHHcCcCcccHHH-HHHHHHhccC-ccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHH
Confidence            7788888888665543 4456655441 22335677666665556666665544321          11 1 122222 3


Q ss_pred             HHHHHhhhhhhhheeeeeeccCCCccCcc
Q 012075          421 WSLTTISYPLLVILVLLAVKDEKSPEEST  449 (471)
Q Consensus       421 ~~~~~~~~~~~i~~~~~~~pet~~~~~~~  449 (471)
                      |...++. +..+++++++++|-+.++++-
T Consensus       212 w~m~i~~-i~~~v~i~~~f~E~~~~~~~~  239 (488)
T KOG2325|consen  212 WLMAILW-IIYIVIILFFFKEVYRGIIDK  239 (488)
T ss_pred             HHHHHHH-HHHHHHHHhheeecccCcccc
Confidence            3333333 344455667777875554443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.31  E-value=0.065  Score=52.45  Aligned_cols=39  Identities=15%  Similarity=0.088  Sum_probs=24.7

Q ss_pred             ccccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccce
Q 012075          266 GLQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKR  306 (471)
Q Consensus       266 ~~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~  306 (471)
                      .++++.++.+..++.-.....+...+.|.+.||  .|||+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~--~Grk~~  101 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADR--YGRKKA  101 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchHH
Confidence            345665566655544344444445567889999  899983

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.13  E-value=0.069  Score=57.49  Aligned_cols=103  Identities=17%  Similarity=0.229  Sum_probs=71.5

Q ss_pred             HHHHHhhhchhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHhhhhhHHHhhhhhhhcc
Q 012075           68 YTTFTIFGILGGGIYNI-LGPQVTLISACSTYVLYAGSFLYYNHHK-----HQAFAIAAGAILGIGAGLLWAAEGAIMTS  141 (471)
Q Consensus        68 ~~~~~i~~~~~g~l~d~-~Grk~~l~i~~~~~~~~~~~~~~~~~~~-----~~~~li~~r~l~G~g~g~~~~~~~~~i~~  141 (471)
                      ....-+.++++|.++|+ +||++++.++.+++.+........+..+     +....+++=.+..+|.|..-+..++...|
T Consensus        33 ~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gd  112 (654)
T TIGR00926        33 TYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGD  112 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHh
Confidence            33345667889999996 9999999999998776432222111101     12235667777888888887777777777


Q ss_pred             CCCCC---chhhHHHHHHHHHHhhhhhhhHHH
Q 012075          142 YPPPN---RKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       142 ~~~~~---~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      -.+++   +|-+.+.++....++|+++++.+.
T Consensus       113 qf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~  144 (654)
T TIGR00926       113 QFEERQLSLRSRFFSFFYFAINAGSLISTIIT  144 (654)
T ss_pred             hcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66544   466778888888889988887765

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.11  E-value=1.7  Score=45.18  Aligned_cols=152  Identities=14%  Similarity=0.108  Sum_probs=80.1

Q ss_pred             cchhHHHHHHHHHHhhhhhhhHhhhhcCCCCC---CChhhhhHHHHHHHHHH-HhhhchhhhhhhccchhHHHHHHHHHH
Q 012075           23 NSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQ---VDTTAANNANTALYTTF-TIFGILGGGIYNILGPQVTLISACSTY   98 (471)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~-~i~~~~~g~l~d~~Grk~~l~i~~~~~   98 (471)
                      +.-+...+.+++.+|+....|+.+.++.....   ..++.....-....+-. .+.-.+-..++|+++|.+.+-+....|
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F   99 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34445577777777777666777665544311   12222211111111111 222356788999999999888776655


Q ss_pred             HHHHHHH---Hhhh---cccchH-H---HHHHHHHHhh------------------hhhHHHh-hhhhhhccCCCCCchh
Q 012075           99 VLYAGSF---LYYN---HHKHQA-F---AIAAGAILGI------------------GAGLLWA-AEGAIMTSYPPPNRKG  149 (471)
Q Consensus        99 ~~~~~~~---~~~~---~~~~~~-~---li~~r~l~G~------------------g~g~~~~-~~~~~i~~~~~~~~RG  149 (471)
                      ..+-+.+   +++.   ..++.. .   ....+.+.|+                  -.+.... .--.+..|+.+.+|-.
T Consensus       100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK  179 (491)
T PF03219_consen  100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK  179 (491)
T ss_pred             HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4443332   2211   111111 0   0001111111                  1111000 1133456788899999


Q ss_pred             hHHHHHHHHHHhhhhhhhHHHHHhh
Q 012075          150 TYISIFWSIFNMGGVIGGLIPFILN  174 (471)
Q Consensus       150 ~~~g~~~~~~~~G~~iG~~i~~~~~  174 (471)
                      |..+++..+-++|.++++.+...+.
T Consensus       180 RfYpl~g~ganigli~sG~~~~~~~  204 (491)
T PF03219_consen  180 RFYPLFGLGANIGLIFSGQLTSYFS  204 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887754443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.87  E-value=0.078  Score=52.57  Aligned_cols=112  Identities=12%  Similarity=0.180  Sum_probs=78.1

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchh
Q 012075          273 TRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAG  352 (471)
Q Consensus       273 ~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (471)
                      +.++...++..+..++++..+++.||  +|+|.-...|..++ .+++.++         +|..      +  .  ..|..
T Consensus        49 ~a~liqfaff~gYf~~~lpa~~~~kk--~gyk~gi~lgL~l~-avg~~lF---------~pAa------~--~--~~y~~  106 (422)
T COG0738          49 EASLIQFAFFGGYFIMSLPAGLLIKK--LGYKAGIVLGLLLY-AVGAALF---------WPAA------S--S--KSYGF  106 (422)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHH--hhhHHHHHHHHHHH-HHHHHHH---------hhhh------h--h--hhHHH
Confidence            56788888899999999999999999  89998777776655 2222222         1110      1  1  23433


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          353 PFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      .+...+..+.+-+..++....+++.+.++ ++.++-+.+.+.+.++|+.++-.+.
T Consensus       107 FL~~lFila~Gi~~LetaaNp~v~~lg~~-~~a~~rlnl~q~fn~lGa~~gp~~g  160 (422)
T COG0738         107 FLVALFILASGIGLLETAANPYVTLLGKP-ESAAFRLNLAQAFNGLGAILGPLLG  160 (422)
T ss_pred             HHHHHHHHHhhhHHHHhccchHHHHhCCc-hhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34444566777888888888888888843 2446677888999999999987755

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.85  E-value=0.17  Score=50.91  Aligned_cols=96  Identities=19%  Similarity=0.154  Sum_probs=57.3

Q ss_pred             hhhchhhhhhh----ccchhHHHHHHHHHHHHHHHHHHhhhcccch-----------------HHHHHHHHHHhhhhhHH
Q 012075           73 IFGILGGGIYN----ILGPQVTLISACSTYVLYAGSFLYYNHHKHQ-----------------AFAIAAGAILGIGAGLL  131 (471)
Q Consensus        73 i~~~~~g~l~d----~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~-----------------~~li~~r~l~G~g~g~~  131 (471)
                      +.+++.|..+|    |+|||+.++......+..... +. ..+++.                 ...+++=-+.=++.-.+
T Consensus        82 ~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~-Li-g~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~  159 (498)
T KOG0637|consen   82 LVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLF-LI-GYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTL  159 (498)
T ss_pred             eecccccccccccccccccccchHHHhhHHHHHHHh-hh-hhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhh
Confidence            34467888888    589988877765432221111 11 111111                 12233333333444444


Q ss_pred             HhhhhhhhccCCCCCchhh-HHHHHHHHHHhhhhhhhHHH
Q 012075          132 WAAEGAIMTSYPPPNRKGT-YISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       132 ~~~~~~~i~~~~~~~~RG~-~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ....=++++|.+.++++-+ +.+++..+..+|..+|...+
T Consensus       160 qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g  199 (498)
T KOG0637|consen  160 QGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG  199 (498)
T ss_pred             hhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence            4556677888876555555 99999999999999999887

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.69  E-value=0.013  Score=59.48  Aligned_cols=123  Identities=15%  Similarity=0.154  Sum_probs=74.9

Q ss_pred             HHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHH
Q 012075          287 LGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAM  366 (471)
Q Consensus       287 ~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  366 (471)
                      +.++++|++.||. +|+|+....|.+++ .++..+.+        .+        .  .  .+....++...+.+++++.
T Consensus        76 ~t~i~GG~laDr~-LG~~~tI~lGail~-~iGh~~L~--------~~--------~--~--~~~~gl~i~L~~I~iG~Gl  133 (498)
T COG3104          76 LTPIIGGWLADRV-LGTRRTIVLGAILM-AIGHLVLA--------IS--------S--V--SGPGGLYIGLALIIVGTGL  133 (498)
T ss_pred             HHHHHHHHHHHHh-cchhHHHHHHHHHH-HHHHHHHh--------cc--------c--c--ccccHHHHHHHHHHhcccc
Confidence            4456788999996 79999888887766 33433321        11        0  0  1112245556666788888


Q ss_pred             HHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHHHhhhhhhhh
Q 012075          367 FQSMVYWVIGALA--DDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNWSLTTISYPLLVI  433 (471)
Q Consensus       367 ~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~  433 (471)
                      .-+-+..+++|++  +|+| +-.+++++..-.++|+.++-...+.... .......+++..+.+...++
T Consensus       134 ~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~p~i~~~~~~-~~g~~~gF~~aavGm~~gl~  200 (498)
T COG3104         134 FKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIAPIITGLLAI-NYGWHVGFGLAAVGMIIGLV  200 (498)
T ss_pred             ccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHH
Confidence            8888888999998  4555 5677887777778887777665443200 00123444555554444444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.45  E-value=3.1  Score=41.33  Aligned_cols=93  Identities=14%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             chhhhhhh-----ccchhHHHHHHHHHHHHHHHHHHh---hh-------cccchHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 012075           76 ILGGGIYN-----ILGPQVTLISACSTYVLYAGSFLY---YN-------HHKHQAFAIAAGAILGIGAGLLWAAEGAIMT  140 (471)
Q Consensus        76 ~~~g~l~d-----~~Grk~~l~i~~~~~~~~~~~~~~---~~-------~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~  140 (471)
                      ++|.|+.|     |+|||++-++=+- |.+.....+.   ..       ..++...+...=++.=+.++..=.+.-...-
T Consensus        81 llWaPiVDs~y~k~~GrrksWvvp~q-~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL  159 (510)
T KOG3574|consen   81 LLWAPIVDSVYSKRFGRRKSWVVPCQ-YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL  159 (510)
T ss_pred             HHHHhhhHHHHHHhhccccceeeehH-HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            68999999     9999998655432 1111111110   00       1122222222223444555554444555555


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhhhhhHH
Q 012075          141 SYPPPNRKGTYISIFWSIFNMGGVIGGLI  169 (471)
Q Consensus       141 ~~~~~~~RG~~~g~~~~~~~~G~~iG~~i  169 (471)
                      .+-.+++-|.+........+.|..+|+.+
T Consensus       160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  160 TMLSRENLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             HhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence            56678898888877766666666666655

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.20  E-value=4.4  Score=41.71  Aligned_cols=70  Identities=7%  Similarity=-0.031  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHhHhHhhhc-ccc---ccccccccchhhhHHHHHHHHHHHHhhhhhhhc
Q 012075          227 VSTEITQVLKLFSNWKMLLIFPASWASNFFYSYQ-FNN---VNGLQFNLRTRGLNNVFYWGAQMLGSVGIGYIF  296 (471)
Q Consensus       227 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~s~~-~~~---~~~~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~  296 (471)
                      .++..+.+++.++-|.+..++.+.+.+-+-+.-. -.+   ....+++.+.-++..++.-=.+++.+++.+++.
T Consensus       264 i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~li~~P~qii~~~~~~Kws  337 (544)
T PF13000_consen  264 IKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLVLIDFPFQIILPYYIGKWS  337 (544)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHHHHhhhHHHHHHHHhhhhh
Confidence            3445566677777776665555544443311100 001   122344333334444444444555555566654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.16  E-value=0.013  Score=60.50  Aligned_cols=116  Identities=19%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +.+++++..-....|.+++.+..|++.||  +|-|++...+.++..++. +.    +.+.           .+     .+
T Consensus        71 s~~~k~~i~ss~~~G~i~~~iP~g~l~~k--~G~r~v~~~~~~~sa~~t-~l----~P~a-----------a~-----~~  127 (466)
T KOG2532|consen   71 SSTEKGLIFSSFFWGYILGQIPGGYLADK--FGARRVFFISGLISALLT-LL----TPLA-----------AS-----IG  127 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcHHHHHH--cCchHHHHHHHHHHHHHH-HH----HHHH-----------HH-----hc
Confidence            44467788888899999999999999999  677765554433321111 11    1000           01     12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      +...+++=++.|+..+...|.+..+...-.+ +.|+++..++......+|..++..++..
T Consensus       128 ~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~sg~  186 (466)
T KOG2532|consen  128 FYLLLVLRFLQGLGQGVLFPAIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVSGL  186 (466)
T ss_pred             chhhHHHHHHhHHHHhHHHhhhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            2245677778898888888877777777664 4456888887777766777777766543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.12  E-value=0.074  Score=53.48  Aligned_cols=121  Identities=10%  Similarity=0.013  Sum_probs=64.1

Q ss_pred             HHHHHHHhhhhhhhcccC--CCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCch--hHHHHH
Q 012075          282 WGAQMLGSVGIGYIFDFS--FPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFA--GPFVLY  357 (471)
Q Consensus       282 ~i~~i~g~~~~g~l~D~~--~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  357 (471)
                      -+..++..++.|..+||.  |+|||+..+.....+..+.+...+.+--......++  +   ....  ...+  ...+.+
T Consensus        77 Pi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~--~---~~~~--~~rai~~~~lg~  149 (498)
T KOG0637|consen   77 PLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN--E---RKPV--KPRAIVLFILGF  149 (498)
T ss_pred             ccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC--c---cccc--chHHHHHHHHHh
Confidence            344555566778899995  789988776543333233322221110000001111  0   0000  1111  112222


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 012075          358 FCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       358 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      -+.=+..-..++.+-+++.++..+..+.-++.+.+-++.++|..++|...+.
T Consensus       150 ~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  150 WLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             HHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence            2333334455667888899988333332338889999999999999998753

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.87  E-value=0.35  Score=49.58  Aligned_cols=62  Identities=15%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             cchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHh
Q 012075          112 KHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       112 ~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~  173 (471)
                      ++.+..++.-++.|+..|-..+....+..+..++++|..+-.+...+..+|..+|..+++.+
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677788899999999999888888888888999999998888888999999999887644

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.79  E-value=0.28  Score=49.06  Aligned_cols=82  Identities=12%  Similarity=0.160  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccc------hHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC---CchhhHHHHHHHHH
Q 012075           89 VTLISACSTYVLYAGSFLYYNHHKH------QAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP---NRKGTYISIFWSIF  159 (471)
Q Consensus        89 ~~l~i~~~~~~~~~~~~~~~~~~~~------~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~---~~RG~~~g~~~~~~  159 (471)
                      +++++|.++|++........+...+      .+.++++-++.++|.|..=+......+|-.++   ++|.+.+.+|....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            4677777777764433222221222      35789999999999999888777777777654   46778889999999


Q ss_pred             HhhhhhhhHHH
Q 012075          160 NMGGVIGGLIP  170 (471)
Q Consensus       160 ~~G~~iG~~i~  170 (471)
                      ++|..++..+.
T Consensus        82 n~G~~~~~~~~   92 (372)
T PF00854_consen   82 NIGSLFSPTLV   92 (372)
T ss_dssp             HHHHHHHHHCC
T ss_pred             hhhhHhhcccc
Confidence            99999988765

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=93.17  E-value=12  Score=38.60  Aligned_cols=154  Identities=14%  Similarity=0.088  Sum_probs=79.1

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhHhhhhcCCCCC---CChhhhhHHHHHHHH-HHHhhhchhhhhhhccchhHHHHHHHHH
Q 012075           22 YNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQ---VDTTAANNANTALYT-TFTIFGILGGGIYNILGPQVTLISACST   97 (471)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~Grk~~l~i~~~~   97 (471)
                      .+.-+...+.+++.+++....|+.+-++..+..   ++++.....-..... +..+..++-..+.+++-|.+.+-+-...
T Consensus        22 ~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~  101 (509)
T COG3202          22 RRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGF  101 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            334555678888888777766776655544311   122221111111111 2233446778899999998887766654


Q ss_pred             HHHHHHHH---Hhhh---cccc-----------------------hHHHHHHHHHHhhhhhHHHh-hhhhhhccCCCCCc
Q 012075           98 YVLYAGSF---LYYN---HHKH-----------------------QAFAIAAGAILGIGAGLLWA-AEGAIMTSYPPPNR  147 (471)
Q Consensus        98 ~~~~~~~~---~~~~---~~~~-----------------------~~~li~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~  147 (471)
                      |..+.+-+   +++.   ..++                       .|..-+.-+..=+-.+.... .--....|+.+.+|
T Consensus       102 F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~e  181 (509)
T COG3202         102 FLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEE  181 (509)
T ss_pred             HHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            43322211   1100   0011                       12111111111111111000 11223456777889


Q ss_pred             hhhHHHHHHHHHHhhhhhhhHHHHHhhc
Q 012075          148 KGTYISIFWSIFNMGGVIGGLIPFILNY  175 (471)
Q Consensus       148 RG~~~g~~~~~~~~G~~iG~~i~~~~~~  175 (471)
                      -.|..+++....+++..+++.+...++.
T Consensus       182 akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         182 AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998887655554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=92.83  E-value=4.5  Score=39.69  Aligned_cols=125  Identities=13%  Similarity=0.048  Sum_probs=78.2

Q ss_pred             hhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHH
Q 012075           78 GGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWS  157 (471)
Q Consensus        78 ~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~  157 (471)
                      .-.+.|..-.|+++++-.+.+..   .....-..++.+.+=+.-++-|...+. -.+-.+|+=+..+|+++-|.+|.--+
T Consensus        62 vFlLTD~lrYKPvivlq~ls~v~---~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~Ra  137 (433)
T KOG3810|consen   62 VFLLTDYLRYKPVVVLQALSGVP---VWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRA  137 (433)
T ss_pred             HHHHhhhhhcceeeeeeccchhH---HHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHH
Confidence            34578999999998888765433   111111257777776777777776664 34556777777899999999999988


Q ss_pred             HHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCC
Q 012075          158 IFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPG  209 (471)
Q Consensus       158 ~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~  209 (471)
                      ..-.|-..|...+-.+.....  .+....-++ -..-+.+..+++.++++|+
T Consensus       138 A~L~g~~~g~vlaQlLvs~~~--~sy~~LN~I-SL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  138 AFLVGKFVGSVLAQLLVSLET--LSYTTLNYI-SLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHHHHhHHHhHHHHHHhhhcc--cchhhhchh-hHHHHHHHHHHHhhCCCCc
Confidence            888888888887744432110  111111122 2334455556667775554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.57  E-value=14  Score=37.86  Aligned_cols=125  Identities=9%  Similarity=-0.091  Sum_probs=62.9

Q ss_pred             ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCC
Q 012075          268 QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG  347 (471)
Q Consensus       268 ~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (471)
                      +++....+..-....+.++.|+++..++.+|  +|-.+.++++......+..+...  ..+   .+.+      +...  
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r--iGlvr~G~~~l~~q~~~L~~~v~--~~~---~~~~------~~~~--  353 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR--IGLVRAGLWSLWWQWVCLALCVV--SFW---APGS------PFSS--  353 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhHHHHHHHHHHHHHHHHH--HHh---cCCC------Cchh--
Confidence            3343344444455567788888888888887  77777777776555322222211  111   1110      0000  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          348 SDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       348 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      .+....+...++-=++--++--...-++.|.. +++++++..|+....|++.-.+.+...-
T Consensus       354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V-~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENV-PESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccC-CHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111111111111111111111122344544 3456689999999999999999998764

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=92.27  E-value=0.77  Score=34.52  Aligned_cols=43  Identities=7%  Similarity=-0.049  Sum_probs=35.1

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHH
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACST   97 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~   97 (471)
                      .++.+.+...++......++++++|.++||+||++..+.....
T Consensus        32 l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   32 LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3466667777788888888999999999999998888777654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=91.05  E-value=0.99  Score=45.61  Aligned_cols=40  Identities=15%  Similarity=0.098  Sum_probs=31.9

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhH
Q 012075          273 TRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVV  314 (471)
Q Consensus       273 ~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~  314 (471)
                      ...+.+.++.+..+.-.+.+.++.||  +|-|...+++....
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk--~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDK--FGLRTALLLGTVLN  119 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcc--cchHHHHHHHHHHH
Confidence            34566778889999888888899999  78888777776655

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=91.04  E-value=1.4  Score=45.19  Aligned_cols=102  Identities=14%  Similarity=0.074  Sum_probs=69.3

Q ss_pred             hhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh----c---ccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC
Q 012075           73 IFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN----H---HKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP  145 (471)
Q Consensus        73 i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~----~---~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~  145 (471)
                      +|..+......+..-|+.+..+.++.++.....+..-    .   -++.++.+.-.++..+...+.+......++|++|+
T Consensus       270 ~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~  349 (433)
T PF03092_consen  270 LGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPK  349 (433)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3444444555566677778777776554222111000    0   12335556667777777777777778889999999


Q ss_pred             CchhhHHHHHHHHHHhhhhhhhHHHHHhh
Q 012075          146 NRKGTYISIFWSIFNMGGVIGGLIPFILN  174 (471)
Q Consensus       146 ~~RG~~~g~~~~~~~~G~~iG~~i~~~~~  174 (471)
                      ..-|...++..+..++|..++..++..+.
T Consensus       350 G~Egt~yall~s~~Nlg~~~s~~lg~~l~  378 (433)
T PF03092_consen  350 GSEGTVYALLASFSNLGSSVSSTLGAFLM  378 (433)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888875443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=88.68  E-value=4.9  Score=41.52  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=75.4

Q ss_pred             HHHHHHHhhhch-hhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC
Q 012075           66 ALYTTFTIFGIL-GGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP  144 (471)
Q Consensus        66 ~~~~~~~i~~~~-~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~  144 (471)
                      .......+++++ .+.+...+|-|+...+|.+.-.+   .....+++++.|+++...++.++.... .++.-+.++.+.+
T Consensus       285 ~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~---~~~~~af~~~~w~~~~~~v~~~~~~~~-~pa~~s~~s~~v~  360 (463)
T KOG2816|consen  285 LVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFL---QLLLFAFATETWMMFAAGVVVALAGIV-FPAIRAFASILVS  360 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHH---HHHHHHHhccchhhhHHHHHHHhhcch-hHHHHhHHHhhcc
Confidence            334444566655 45788889999977777765443   223335578999999999888776554 5566777888889


Q ss_pred             CCchhhHHHHHHHHHHhhhhhhhHH
Q 012075          145 PNRKGTYISIFWSIFNMGGVIGGLI  169 (471)
Q Consensus       145 ~~~RG~~~g~~~~~~~~G~~iG~~i  169 (471)
                      ++++|+..++......+...+++.+
T Consensus       361 ~~e~g~v~~~is~i~~l~~~~~~~~  385 (463)
T KOG2816|consen  361 PEEQGKVFGIISGIEGLSGVVSPAL  385 (463)
T ss_pred             cccccchhhHHHHHHHHhhhhhHHH
Confidence            9999999999999999999988876

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=88.28  E-value=11  Score=37.98  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=54.3

Q ss_pred             ccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHH
Q 012075          111 HKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFI  172 (471)
Q Consensus       111 ~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~  172 (471)
                      -++.|.+++.-+..|+-.|...+-....+.|-.++++|...+|.-....+.|..++.+++..
T Consensus       332 ipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  332 IPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            47889888999999999999887777777777799999999999999999999999998753

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=85.64  E-value=0.21  Score=52.67  Aligned_cols=137  Identities=17%  Similarity=0.135  Sum_probs=2.7

Q ss_pred             ccccc--chhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeee-hhhhHHHHHHHHHHhHhhhhccc--CCCCC----
Q 012075          267 LQFNL--RTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFV-GIVVVALLGSAIWAGGLANQLNY--SHDKP----  337 (471)
Q Consensus       267 ~~~~~--~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~-g~~~~~~~~~~~~~~~~~~~~~~--~~~~~----  337 (471)
                      ..|++  ++.++....+-++.++..++..++.+|   ++|++++- |..++ .++.+++..=..+...|  ...+.    
T Consensus        31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~---~hrprwig~g~~~~-~~g~~l~~lPhf~~~~y~~~~~~~~~~~  106 (539)
T PF03137_consen   31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR---GHRPRWIGIGALLM-GLGSLLFALPHFLSGPYSYEEASNSNGN  106 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCcceeeecHHHH-HHHHHHHhccHhhcCCCccccccccccc
Confidence            34443  356788888899999998888888876   56776643 33333 23333321100000011  10000    


Q ss_pred             ---CCccC----------------C-CCCC--CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 012075          338 ---PAKLD----------------F-KNSG--SDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGV  395 (471)
Q Consensus       338 ---~~~~~----------------~-~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  395 (471)
                         .....                . .+.+  .-+...++.-++.|++..-.++.-.++++|... +++.....|+....
T Consensus       107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~-~~~splYiGi~~~~  185 (539)
T PF03137_consen  107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS-KKNSPLYIGILYAM  185 (539)
T ss_dssp             ---------------------------------------------SSS--------------------------------
T ss_pred             cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc-cccCccchhhhhHH
Confidence               00000                0 0000  112334566678888888888888889999873 44557888999999


Q ss_pred             HHHHHHHHhhhcc
Q 012075          396 QSAGAAVAWQVDT  408 (471)
Q Consensus       396 ~s~g~~i~~~~~~  408 (471)
                      ..+|-+++|.+++
T Consensus       186 ~~lGPa~Gf~lg~  198 (539)
T PF03137_consen  186 SILGPALGFLLGS  198 (539)
T ss_dssp             -------------
T ss_pred             hhccHHHHHHHHH
Confidence            9999999998874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.33  E-value=9.4  Score=35.88  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhhcccCCCCccc
Q 012075          276 LNNVFYWGAQMLGSVGIGYIFDFSFPTRRK  305 (471)
Q Consensus       276 l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~  305 (471)
                      ...+++-++..+|....|.+... ...||+
T Consensus       145 ~~~I~fv~g~~~G~~~ig~~nkt-~~kRk~  173 (267)
T PF07672_consen  145 IFQILFVAGYFLGPFTIGLWNKT-NYKRKP  173 (267)
T ss_pred             HHHHHHHHHHhhhceeeccchhh-hhhhhh
Confidence            34455666666777777776644 345655

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=84.24  E-value=18  Score=37.76  Aligned_cols=45  Identities=9%  Similarity=-0.018  Sum_probs=35.5

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHH
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVL  100 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~  100 (471)
                      ++.......++.-+...++++++|+++||+-+|+.+++++++-.+
T Consensus        44 ~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   44 NPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             CHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            355556667777788889999999999999998888888875433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=83.18  E-value=0.41  Score=46.65  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=3.5

Q ss_pred             cchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHH
Q 012075          112 KHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFI  172 (471)
Q Consensus       112 ~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~  172 (471)
                      +|.+..++.-++.|+..|-..+....+..+..++++|..+-.+......+|..+|..+++.
T Consensus       246 ~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  246 NSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             ---------------------HHHH------------------------------------
T ss_pred             cchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677888899999999988888888888889999988888888888898888888753

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=82.59  E-value=5.6  Score=43.06  Aligned_cols=114  Identities=13%  Similarity=0.000  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHH
Q 012075          278 NVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLY  357 (471)
Q Consensus       278 ~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (471)
                      ....+.+.+ ..+++|.+.|++ +||++...++.++. .++..+..    +. ..+     +..+  .  ......++..
T Consensus        30 ~~f~~l~yl-~pilGg~iAD~~-lG~~~tIl~~~ii~-~lG~~lla----i~-a~~-----~~~~--~--~~~~~~l~gL   92 (654)
T TIGR00926        30 HTFTYLCYL-TPLIGAIIADGW-LGKFKTILYLSIVY-VVGHALLS----FG-AIP-----SSGH--P--LHDLLDLLGL   92 (654)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHH-hhhHHHHHHHHHHH-HHHHHHHH----hc-cCc-----cccc--c--hHHHHHHHHH
Confidence            333344443 445678899984 89999776665544 23322211    00 001     0001  0  1111234444


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhcC--CchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 012075          358 FCYGLLDAMFQSMVYWVIGALAD--DSETLSRYSGFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       358 ~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~s~g~~i~~~~~~  408 (471)
                      .+...+.+...+.+-+..++.++  +.+++.+.+.++.+..++|+.++..+.+
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~  145 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITP  145 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566677777777777888773  2334677888888888888887766554

>PF12832 MFS_1_like: MFS_1 like family

Probab=82.06  E-value=2  Score=32.27  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=32.2

Q ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceee
Q 012075          267 LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGF  308 (471)
Q Consensus       267 ~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~  308 (471)
                      .+++..+.++.........+++.++.|.+.||  .+|++..+
T Consensus        30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk--~~~~~~~l   69 (77)
T PF12832_consen   30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK--FGKRKVIL   69 (77)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCccHHHH
Confidence            34566678888888899999999999999999  67777443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.40  E-value=10  Score=38.95  Aligned_cols=92  Identities=13%  Similarity=0.092  Sum_probs=61.7

Q ss_pred             hhchhhhh---hhccchhHHHHHHHHHHHHHHHHHHhhh--ccc-------------chHHHHHHHHHHhhhhhHHHhhh
Q 012075           74 FGILGGGI---YNILGPQVTLISACSTYVLYAGSFLYYN--HHK-------------HQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        74 ~~~~~g~l---~d~~Grk~~l~i~~~~~~~~~~~~~~~~--~~~-------------~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++.+.+.+   ++++||++.+.++.++..++........  .++             +.....+..++.|++-+...+..
T Consensus       295 ~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~  374 (461)
T KOG3098|consen  295 GGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQR  374 (461)
T ss_pred             HHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHH
Confidence            34444444   5679999999999987766433322211  111             23456778899999999988888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhh
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIG  166 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG  166 (471)
                      ..++.+.. |++|..+.+++-.-..++..++
T Consensus       375 ~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  375 YVIIALLY-PDDRAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             HHHHHHHh-cCchHHHHHHHHHHHHHHHHHH
Confidence            88888876 7788877777765555554443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=80.64  E-value=22  Score=36.33  Aligned_cols=98  Identities=12%  Similarity=-0.023  Sum_probs=59.1

Q ss_pred             HhhhchhhhhhhccchhHHHHHHHHHHHHHH----HHHHhhhccc----chHHHHHHHHHHhhhhhHHHhhhhhhhccCC
Q 012075           72 TIFGILGGGIYNILGPQVTLISACSTYVLYA----GSFLYYNHHK----HQAFAIAAGAILGIGAGLLWAAEGAIMTSYP  143 (471)
Q Consensus        72 ~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~----~~~~~~~~~~----~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~  143 (471)
                      ..+.+..+++.+|+|..++=+++...-..+.    .+++.. ..+    +...++.+=++.-+|-=..=-+..-++-|..
T Consensus       307 l~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~-~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V  385 (432)
T PF06963_consen  307 LLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP-GSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENV  385 (432)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccC
Confidence            3455889999999998887777765332221    222221 111    1122333333333332222234566677888


Q ss_pred             CCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          144 PPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       144 ~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      |+++||...|...+..++--++-..+.
T Consensus       386 ~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  386 PESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888777766654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	471
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 43/278 (15%), Positives = 87/278 (31%), Gaps = 32/278 (11%)

Query: 65  TALYTTFTIFGILGGGIYNILGPQVTLISA---CSTYVLYAGSFLYYNHHKHQAFAIAAG 121
           + +   +     + G + +   P+V L +     +  +L+ G F+ +         +   
Sbjct: 69  SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVMFVL-L 126

Query: 122 AILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAV 181
            + G   G+ W   G  M  +     +G  +S++    N+GG I  L+  +        +
Sbjct: 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-------M 179

Query: 182 SVNDGTYIGFMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVL------ 235
           +  +  +           L++L      R            +Y N   +           
Sbjct: 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELT 239

Query: 236 KLFSNWKMLLIFPASWA---SNFFY---SYQFNN------VNGLQFNLRTRGLNNVFYWG 283
                 + +L     W    +N F     Y   +           F L         Y  
Sbjct: 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299

Query: 284 AQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAI 321
           A + G++  G++ D  F  R  RG  G+  + L+  A 
Sbjct: 300 AGIPGTLLCGWMSDKVF--RGNRGATGVFFMTLVTIAT 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	471
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.93
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.86
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.78
2xut_A	524	Proton/peptide symporter family protein; transport	99.74
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.73
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.8
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.65
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.48
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.48
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.47
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.33
2xut_A	524	Proton/peptide symporter family protein; transport	97.78

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=4.1e-28  Score=250.24  Aligned_cols=378  Identities=12%  Similarity=0.057  Sum_probs=210.0

Q ss_pred             hHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhh---------------hcccchHHHHHHHHHHh
Q 012075           61 NNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYY---------------NHHKHQAFAIAAGAILG  125 (471)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~---------------~~~~~~~~li~~r~l~G  125 (471)
                      +...+..+.+..+|++++|+++||+|||++++++.+++.+........               ..++|.++++++|+++|
T Consensus        58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G  137 (491)
T 4gc0_A           58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG  137 (491)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence            344566678888999999999999999999999999887754433210               13689999999999999


Q ss_pred             hhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCc--cccccchhHHHHHHHHHHHHHHH
Q 012075          126 IGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEA--VSVNDGTYIGFMCFMSAGALLSL  203 (471)
Q Consensus       126 ~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~  203 (471)
                      +|.|...+..+.|++|++|+++||+..++++.....|.++++++++......+..  ..++|+.......+..+..+...
T Consensus       138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (491)
T 4gc0_A          138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL  217 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence            9999999999999999999999999999999999999999998876554322110  11112211111112222222223


Q ss_pred             hccC--CCccccCC---CCccccc----------cCCCHHHHHHH------HHHHhcchhHHHHHHHHHHhHhH----hh
Q 012075          204 VILP--PGRVIRDD---GTHCTNI----------KYSNVSTEITQ------VLKLFSNWKMLLIFPASWASNFF----YS  258 (471)
Q Consensus       204 ~l~~--p~~~~r~~---~~~~~~~----------~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~----~s  258 (471)
                      +..|  |+++.+++   +++....          +....++...+      ......+++.++......+.++.    ..
T Consensus       218 ~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (491)
T 4gc0_A          218 YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVL  297 (491)
T ss_dssp             GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHH
Confidence            3334  33332111   1100000          00000000000      01112333443333333322221    01


Q ss_pred             hccccccc-cccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCC
Q 012075          259 YQFNNVNG-LQFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKP  337 (471)
Q Consensus       259 ~~~~~~~~-~~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (471)
                      ++.+.+.. ...+.......++..++..+++.++.+++.||  +|||+..+.+...+.+. +...+...  .   .    
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr--~Grr~~~~~~~~~~~~~-~~~l~~~~--~---~----  365 (491)
T 4gc0_A          298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIG-MFSLGTAF--Y---T----  365 (491)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHHHH-HHHHHHHH--H---T----
T ss_pred             hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh--hcCcchhccchHHHHHH-HHHHHHHH--h---c----
Confidence            11011111 11222233455667788999999999999999  89999887776655322 22211111  1   1    


Q ss_pred             CCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchh--hH
Q 012075          338 PAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSL--LS  415 (471)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~--~~  415 (471)
                          +  .  ..+.......++...+..++.+..+.+.+|+++. +-|+++.|+...+..++..+.-.+.+.....  ..
T Consensus       366 ----~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt-~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~  436 (491)
T 4gc0_A          366 ----Q--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV  436 (491)
T ss_dssp             ----T--C--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT-TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred             ----c--c--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0  1  2222233334444455566777888889999932 2347888888877777766655443321110  00


Q ss_pred             -HH--HHHHHHHHhhhhhhhheeeeeeccCCCc-----cCccccccCcCCCC
Q 012075          416 -QL--VVNWSLTTISYPLLVILVLLAVKDEKSP-----EESTNSKEVTLPAA  459 (471)
Q Consensus       416 -~~--~~~~~~~~~~~~~~i~~~~~~~pet~~~-----~~~~~~~~~~~~~~  459 (471)
                       ..  +..+.++++..+...+++++++||||.+     ||.+.+|++..|++
T Consensus       437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~~  488 (491)
T 4gc0_A          437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQT  488 (491)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---------
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccccC
Confidence             01  1223344444455666788999999544     44455555554444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.93  E-value=5.8e-24  Score=216.30  Aligned_cols=330  Identities=13%  Similarity=0.065  Sum_probs=205.4

Q ss_pred             hhcCCCCCCChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhc----ccchHHHHHHHH
Q 012075           47 SGMGGGGQVDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNH----HKHQAFAIAAGA  122 (471)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~----~~~~~~li~~r~  122 (471)
                      ..+..+. .++...+...+....+..++++++|+++||+|||+.++++.+++.+.....   ..    +++.+.++++|+
T Consensus        52 ~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~  127 (451)
T 1pw4_A           52 PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM---GFVPWATSSIAVMFVLLF  127 (451)
T ss_dssp             HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCHHHHSSSSHHHHHHH
T ss_pred             HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH---HhhhhccccHHHHHHHHH
Confidence            3344433 445555667777888888999999999999999999999998876633322   33    578999999999


Q ss_pred             HHhhhhhHHHhhhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccc-cccchhHHHHHHHHHHHHH
Q 012075          123 ILGIGAGLLWAAEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVS-VNDGTYIGFMCFMSAGALL  201 (471)
Q Consensus       123 l~G~g~g~~~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~  201 (471)
                      +.|++.+...++..+++.|+.|+++|+++++++.....+|.++|+.++..+...    .+ |++..++ ..++..+..++
T Consensus       128 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----~g~w~~~f~~-~~~~~~~~~~~  202 (451)
T 1pw4_A          128 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW----FNDWHAALYM-PAFCAILVALF  202 (451)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH----TCCSTTCTHH-HHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHH-HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999997433221    23 5555443 33333333333


Q ss_pred             HHhccCC--CccccCCCCccccc------cCCCHHHHHHH--HHHHhcchhHHHHHHHHHHhHhH---hhhcccccccc-
Q 012075          202 SLVILPP--GRVIRDDGTHCTNI------KYSNVSTEITQ--VLKLFSNWKMLLIFPASWASNFF---YSYQFNNVNGL-  267 (471)
Q Consensus       202 ~~~l~~p--~~~~r~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~---~s~~~~~~~~~-  267 (471)
                      ..+..|+  ++.+++++++...+      ++++.+...++  ..+.+++|+++......+.....   ....++.+... 
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (451)
T 1pw4_A          203 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV  282 (451)
T ss_dssp             HHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB
T ss_pred             HHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333332  22111110000000      00000000111  12334566665544433332221   11111333332 


Q ss_pred             -ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCC--CccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCC
Q 012075          268 -QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFP--TRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFK  344 (471)
Q Consensus       268 -~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~--gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (471)
                       +++..+.++.....+++.+++.++.+++.||  +  |||+....+..+...+....    +  .  +.        +  
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~----~--~--~~--------~--  342 (451)
T 1pw4_A          283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIV----Y--W--MN--------P--  342 (451)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHHH----T--T--SC--------C--
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHH----H--H--Hh--------c--
Confidence             3344456677778899999999999999999  6  88876655443321111111    1  0  11        0  


Q ss_pred             CCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH-HHHHHhhhcc
Q 012075          345 NSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSA-GAAVAWQVDT  408 (471)
Q Consensus       345 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~-g~~i~~~~~~  408 (471)
                      +  .+.....+..++.|++....++..+.++.|.++ +++++++.|+.+.+..+ +.+++..+..
T Consensus       343 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~~~~~g  404 (451)
T 1pw4_A          343 A--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVG  404 (451)
T ss_dssp             T--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  122334556666777777777777788888884 34568999999999988 8888776543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.91  E-value=1.3e-22  Score=205.69  Aligned_cols=313  Identities=12%  Similarity=0.033  Sum_probs=193.6

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+....+..++++++|+++||+|||++++++.+++.+..........+++.+.++++|++.|++.+...++
T Consensus        58 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  137 (438)
T 3o7q_A           58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA  137 (438)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh
Confidence            34555666777888888899999999999999999999999988765444322134689999999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccc------------------------cccchhHH
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVS------------------------VNDGTYIG  190 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~------------------------~~~~~~~~  190 (471)
                      ...+++|+.|+++|++.+++++....+|..+|+.++..+.....  +.                        |++.. ++
T Consensus       138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~  214 (438)
T 3o7q_A          138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY-MI  214 (438)
T ss_dssp             HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHH-HH
Confidence            99999999999999999999999999999999998744431211  11                        33332 22


Q ss_pred             HHHHHHHHHHHHHhccCCCccccCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhccccc-cc
Q 012075          191 FMCFMSAGALLSLVILPPGRVIRDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNV-NG  266 (471)
Q Consensus       191 ~~~~~~~~~i~~~~l~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~-~~  266 (471)
                      ..++..+..++.++.+.|+..++++++    +++++.++.++   +.+++|+++......+....   ......+.+ ..
T Consensus       215 ~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (438)
T 3o7q_A          215 IVAIVLLVALLIMLTKFPALQSDNHSD----AKQGSFSASLS---RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVE  287 (438)
T ss_dssp             HHHHHHHHHHHHHHCCCCCCTTTCCCC----SSTTSHHHHHH---HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccccccc----ccccchhhhHH---HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            222323222333333334332221111    11223333333   34566766544433222211   111112344 33


Q ss_pred             c--ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCC
Q 012075          267 L--QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFK  344 (471)
Q Consensus       267 ~--~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (471)
                      .  +++....++......++.+++.++.+++.||  +|||+....+..+.. +.....    . .   .           
T Consensus       288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~-~~~~~~----~-~---~-----------  345 (438)
T 3o7q_A          288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIAM-ALCLIS----A-F---A-----------  345 (438)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHH-HHHHHH----H-H---C-----------
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHH-HHHHHH----H-H---c-----------
Confidence            2  3344456677777889999999999999999  789987665544331 111111    1 0   0           


Q ss_pred             CCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 012075          345 NSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQV  406 (471)
Q Consensus       345 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~  406 (471)
                         +... .....++.+++.+...+..+.+..|.+++.+  +++.++.. ...++.+++-.+
T Consensus       346 ---~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~~  400 (438)
T 3o7q_A          346 ---GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQDT--KYGSSFIV-MTIIGGGIVTPV  400 (438)
T ss_dssp             ---CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGGH--HHHHHHHH-HTTHHHHHHHHH
T ss_pred             ---CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cchhhHHH-HHHHHHHHHHHH
Confidence               1111 2334456677777777778877777774333  45555444 344555554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.86  E-value=2.1e-20  Score=192.59  Aligned_cols=328  Identities=13%  Similarity=0.025  Sum_probs=189.5

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNI-LGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      .++...+...+....+..++++++|+++|| +|||+++.++.+++.+.....   +.++|.+.++++|++.|++.+...+
T Consensus        51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~  127 (491)
T 4aps_A           51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL---ALPFGASALFGSIILIIIGTGFLKP  127 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH---HSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHhccc
Confidence            345566677778888888999999999999 899999999998876633322   3478999999999999999999999


Q ss_pred             hhhhhhccCCCCCc--hhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcc
Q 012075          134 AEGAIMTSYPPPNR--KGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRV  211 (471)
Q Consensus       134 ~~~~~i~~~~~~~~--RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~  211 (471)
                      ...++++|+.|+++  |++.++++....++|..+||.++..+...    .+|++..++ ..+...++.++.++..| ++.
T Consensus       128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~g~~~~f~~-~~~~~~~~~~~~~~~~~-~~~  201 (491)
T 4aps_A          128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA----AGYHVAFSL-AAIGMFIGLLVYYFGGK-KTL  201 (491)
T ss_dssp             HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SCHHHHHHH-HHHHHHHHHHHHHHHHH-TTC
T ss_pred             hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHH-HHHHHHHHHHHHHHhCc-ccc
Confidence            99999999999988  77788889999999999999987444321    235444333 23233333333333322 111


Q ss_pred             ccC-CCCccccccCCCHHHHH------------------------------------------------HHHHHH-hcch
Q 012075          212 IRD-DGTHCTNIKYSNVSTEI------------------------------------------------TQVLKL-FSNW  241 (471)
Q Consensus       212 ~r~-~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~-~~~~  241 (471)
                      +++ ++++.. .++++.++..                                                ++.... ..++
T Consensus       202 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (491)
T 4aps_A          202 DPHYLRPTDP-LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL  280 (491)
T ss_dssp             CSCCSCCSCC-CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cccccCCCCc-cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            111 000000 0000000000                                                000000 0111


Q ss_pred             h---HHHHHHHHHHhHhHhhhc---ccccccc--ccccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceee-----
Q 012075          242 K---MLLIFPASWASNFFYSYQ---FNNVNGL--QFNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGF-----  308 (471)
Q Consensus       242 ~---~ll~~~~~~~~~~~~s~~---~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~-----  308 (471)
                      +   .+.+..........+...   ++.+...  ..+....++.....+++.+++.++.+++.||  +|||+...     
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r--~~~r~~~~~~~~~  358 (491)
T 4aps_A          281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA--WKKNQPSSPTKFA  358 (491)
T ss_dssp             -CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH--TTTC---CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH--HhccCCCchHHHH
Confidence            1   111111111111111111   0112111  1222245566666788888888899999999  78887654     


Q ss_pred             ehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHH
Q 012075          309 VGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRY  388 (471)
Q Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  388 (471)
                      .+..++. ++.....  .. .....+       + .+  .+.....+..++.+++.+...+..+.++.|.+++ ++++++
T Consensus       359 ~~~~~~~-~~~~~~~--~~-~~~~~~-------~-~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-~~~g~~  423 (491)
T 4aps_A          359 VGLMFAG-LSFLLMA--IP-GALYGT-------S-GK--VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-AFNSQM  423 (491)
T ss_dssp             HHHHHHH-HHHTTTH--HH-HHHCCC-------C-TT--CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-TCSSSS
T ss_pred             HHHHHHH-HHHHHHH--HH-HHhcCC-------C-CC--ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-HHHHHH
Confidence            3332221 1111110  00 000110       0 01  2333455667778888888788888889998843 345889


Q ss_pred             HHHHHHHHHHHHHHHhhhccc
Q 012075          389 SGFYKGVQSAGAAVAWQVDTH  409 (471)
Q Consensus       389 ~~~~~~~~s~g~~i~~~~~~~  409 (471)
                      .|+++...++|.+++..+.+.
T Consensus       424 ~g~~~~~~~~g~~i~~~~~~~  444 (491)
T 4aps_A          424 MSMWFLSSSVGSALNAQLVTL  444 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988877654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.78  E-value=4.1e-19  Score=176.38  Aligned_cols=310  Identities=13%  Similarity=0.063  Sum_probs=186.1

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .++...+...+.......++++++|+++||+|||+.++++.++..+......   .+++.+.++++|++.|++.+...+.
T Consensus        32 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~g~~~~~~~~~  108 (375)
T 2gfp_A           32 VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV---TTSSLTVLIAASAMQGMGTGVGGVM  108 (375)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHhhhhh
Confidence            3455566777778888889999999999999999999999988766433322   3578999999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccccC
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIRD  214 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r~  214 (471)
                      ...++.|..|+++|++.+++++....+|..+|+.++..+. .   ..+|++. +....++..+..+...+..|+++. ++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~  182 (375)
T 2gfp_A          109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-T---MWNWRAC-YLFLLVLCAGVTFSMARWMPETRP-VD  182 (375)
T ss_dssp             HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-C---HHHHHHH-HHHHHHHHHHHHCCCCCSSCCCST-TT
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-H---hccHHHH-HHHHHHHHHHHHHHHHHHCcccCC-CC
Confidence            9999999999999999999999999999999999974332 1   1123322 222222222222112222332221 11


Q ss_pred             CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhcccccccc--ccccchhhhHHHHHHHHHHHHh
Q 012075          215 DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGL--QFNLRTRGLNNVFYWGAQMLGS  289 (471)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~--~~~~~~~~l~~~~~~i~~i~g~  289 (471)
                      ++++   +++++.    ++   .+++|+++......+....   .+....+.+...  +++....++.....+++.+++.
T Consensus       183 ~~~~---~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T 2gfp_A          183 APRT---RLLTSY----KT---LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA  252 (375)
T ss_dssp             CCCC---CTTTCS----TH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccc---cHHHHH----HH---HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            1100   111122    11   2234444433332222221   111122333322  2233345666777789999999


Q ss_pred             hhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhHHHHHH
Q 012075          290 VGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLDAMFQS  369 (471)
Q Consensus       290 ~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  369 (471)
                      ++.+++.||  .+|+  ...+...+...+.....  ....              ..  .+.....+..++.+++.+..++
T Consensus       253 ~~~~~l~~r--~~~~--~~~~~~~~~~~~~~~~~--~~~~--------------~~--~~~~~~~~~~~l~g~~~~~~~~  310 (375)
T 2gfp_A          253 WFAGRPNKR--FSTL--MWQSVICCLLAGLLMWI--PDWF--------------GV--MNVWTLLVPAALFFFGAGMLFP  310 (375)
T ss_dssp             HHHHTTTTH--HHHH--HHHHHHHHHHTSSSSSH--HHHH--------------HH--HHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHH--Hhhh--------------cc--ccHHHHHHHHHHHHHHHHHhhH
Confidence            999999888  4442  22222110000000000  0000              00  1222334556677888888888


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 012075          370 MVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVD  407 (471)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~  407 (471)
                      ....+..|..+  ++++++.++.+..+++|..++-.+.
T Consensus       311 ~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~~  346 (375)
T 2gfp_A          311 LATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASLS  346 (375)
T ss_dssp             TTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred             HHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHHH
Confidence            88888888874  4668999998888777766554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.74  E-value=1.2e-16  Score=165.97  Aligned_cols=114  Identities=16%  Similarity=0.167  Sum_probs=94.7

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhcc-chhHHHHHHHHHHHHHHHHHHhhhccc-chHHHHHHHHHHhhhhhHHHhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNIL-GPQVTLISACSTYVLYAGSFLYYNHHK-HQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grk~~l~i~~~~~~~~~~~~~~~~~~~-~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      +...+...+....+..++++++|+++||+ |||+++.++.+++.+.....   ..++ +.+.++++|++.|++.+...+.
T Consensus        53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~  129 (524)
T 2xut_A           53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL---AIFEHSVQGFYTGLFLIALGSGGIKPL  129 (524)
T ss_dssp             TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH---HHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHhccccchh
Confidence            44455667777778888999999999999 99999999998776643332   2356 8999999999999999999999


Q ss_pred             hhhhhccCCCCCchhhHHHH---HHHHHHhhhhhhhHHHHHh
Q 012075          135 EGAIMTSYPPPNRKGTYISI---FWSIFNMGGVIGGLIPFIL  173 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~---~~~~~~~G~~iG~~i~~~~  173 (471)
                      ..+++.|..|+++||+..+.   +....++|..+|+.+...+
T Consensus       130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l  171 (524)
T 2xut_A          130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL  171 (524)
T ss_dssp             HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877666   8888999999999886433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.73  E-value=9.6e-18  Score=169.42  Aligned_cols=315  Identities=10%  Similarity=-0.024  Sum_probs=160.7

Q ss_pred             hhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccch-HHHHHHHHHHhhhhhHHHhhh
Q 012075           57 TTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQ-AFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~-~~li~~r~l~G~g~g~~~~~~  135 (471)
                      +...+...+....+..++++++|+++||+|||+.++++.+++.+...........+.. ..++.++++.|++.+..+.+.
T Consensus        42 ~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  121 (417)
T 2cfq_A           42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG  121 (417)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4445566777778888999999999999999999999887654322121110111111 123456777777666654443


Q ss_pred             hhhhccCCCC--CchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCcccc
Q 012075          136 GAIMTSYPPP--NRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVIR  213 (471)
Q Consensus       136 ~~~i~~~~~~--~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~r  213 (471)
                      .....++.++  ++||...|.......+|..+||.++..+..     .+|++..+ +..+..++. ++..++.+|++.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-----~~~~~~f~-~~~~~~~~~-~~~~~~~~~~~~~~  194 (417)
T 2cfq_A          122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-----INNQFVFW-LGSGCALIL-AVLLFFAKTDAPSS  194 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-----HCSHHHHT-TTTTTTTTH-HHHSCSSCCCCSCS
T ss_pred             HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-----hchhHHHH-HHHHHHHHH-HHHHHHcCcccccc
Confidence            3333333332  456777787777778888888887633321     12333222 211121111 12223333332111


Q ss_pred             C--CCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHHhHh---Hhhhccccccccccc-----cchhhhHHHHHHH
Q 012075          214 D--DGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWASNF---FYSYQFNNVNGLQFN-----LRTRGLNNVFYWG  283 (471)
Q Consensus       214 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~s~~~~~~~~~~~~-----~~~~~l~~~~~~i  283 (471)
                      .  ++++....++.+.    ++..+.+++|+++......+....   .+...++.+....++     ....++......+
T Consensus       195 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  270 (417)
T 2cfq_A          195 ATVANAVGANHSAFSL----KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL  270 (417)
T ss_dssp             SCSSSSSSSCCCCCCH----HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHH
T ss_pred             cccccccccccccccH----HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            1  1110000111121    223345566765443322121111   010011222211121     1122444555677


Q ss_pred             HHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhh
Q 012075          284 AQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLL  363 (471)
Q Consensus       284 ~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  363 (471)
                      +++++.++.+++.||  +|||+....+...+. +....    ..    +.              .+.....+..++.+++
T Consensus       271 ~~~~~~~~~g~l~dr--~g~~~~l~~~~~~~~-~~~~~----~~----~~--------------~~~~~~~~~~~l~~~~  325 (417)
T 2cfq_A          271 LNASIMFFAPLIINR--IGGKNALLLAGTIMS-VRIIG----SS----FA--------------TSALEVVILKTLHMFE  325 (417)
T ss_dssp             HHHHHHHHHHHHHHH--HCHHHHHHHHHHHHH-HHHHH----HT----TC--------------CSHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHH--hcHHHHHHHHHHHHH-HHHHH----HH----Hh--------------ccHHHHHHHHHHHHHH
Confidence            888899999999999  789986655443331 11111    10    00              1111233334445555


Q ss_pred             HHHHHHHHHHHHHHhcCCchhhhHHHHH-HHHHHHHHHHHHhhhcc
Q 012075          364 DAMFQSMVYWVIGALADDSETLSRYSGF-YKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       364 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~s~g~~i~~~~~~  408 (471)
                      ....++..+.+++|.++ ++.++++.+. ++..+++|..++..+..
T Consensus       326 ~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G  370 (417)
T 2cfq_A          326 VPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             HHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence            56666666778899884 3455777777 46666777777665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.80  E-value=7.7e-08  Score=96.91  Aligned_cols=116  Identities=13%  Similarity=-0.052  Sum_probs=90.0

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhcc--chhHHHHHHHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHhhhhhHH
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNIL--GPQVTLISACSTYVLYAGSFLYYNHH--KHQAFAIAAGAILGIGAGLL  131 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grk~~l~i~~~~~~~~~~~~~~~~~~--~~~~~li~~r~l~G~g~g~~  131 (471)
                      ++...+...+....+..++.++++++.||+  |||+.+.++.++...  .+.......  .+.+.+++.-++.|++.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  363 (451)
T 1pw4_A          286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT--IATIVYWMNPAGNPTVDMICMIVIGFLIYGP  363 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH--HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH--HHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence            344445555666666778889999999999  999999888766542  121211222  36777888889999999888


Q ss_pred             HhhhhhhhccCCCCCchhhHHHHHHHHHHh-hhhhhhHHHHHh
Q 012075          132 WAAEGAIMTSYPPPNRKGTYISIFWSIFNM-GGVIGGLIPFIL  173 (471)
Q Consensus       132 ~~~~~~~i~~~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~~~~  173 (471)
                      .+....++.|..|+++||+.+|++.....+ |..+|+.+...+
T Consensus       364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l  406 (451)
T 1pw4_A          364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  406 (451)
T ss_dssp             HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999 999999886333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.65  E-value=9.6e-08  Score=95.84  Aligned_cols=103  Identities=10%  Similarity=-0.053  Sum_probs=79.5

Q ss_pred             HHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCCC
Q 012075           66 ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPPP  145 (471)
Q Consensus        66 ~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~~  145 (471)
                      +......++.++.++++||+|||+.+.++.++..+..   ......++.+.+++..++.|++.+...+....+++|..|+
T Consensus       267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~  343 (417)
T 2cfq_A          267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI---IGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV  343 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH---HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3344556677899999999999999988877655422   2223356777788888888888777666677899999999


Q ss_pred             CchhhHHHH-HHHHHHhhhhhhhHHHH
Q 012075          146 NRKGTYISI-FWSIFNMGGVIGGLIPF  171 (471)
Q Consensus       146 ~~RG~~~g~-~~~~~~~G~~iG~~i~~  171 (471)
                      +.||+..++ +.....+|..+||.+..
T Consensus       344 ~~~g~~~g~~~~~~~~lg~~~gp~l~G  370 (417)
T 2cfq_A          344 RFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence            999999998 57778889999998863

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.48  E-value=1.5e-06  Score=87.10  Aligned_cols=109  Identities=13%  Similarity=-0.039  Sum_probs=80.2

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAE  135 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~  135 (471)
                      ++...+...+....+..++.++.++++||+|||+.+.++.++..+......   ..++.+.++. -++.|++.+..++..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~g~~~~~~~~~~  368 (438)
T 3o7q_A          293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA---FAGGHVGLIA-LTLCSAFMSIQYPTI  368 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHH-HHHHHHHHTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH---HcCCcHHHHH-HHHHHHHHHHHHHHH
Confidence            344445556666677778889999999999999999998876655332222   2455554444 488889999888888


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          136 GAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       136 ~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ..+..|..|++ |++..++.. ...+|..++|.+.
T Consensus       369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~  401 (438)
T 3o7q_A          369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVM  401 (438)
T ss_dssp             HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHH
T ss_pred             HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHH
Confidence            88878887766 888888876 5568888888876

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.48  E-value=1.5e-06  Score=85.28  Aligned_cols=149  Identities=10%  Similarity=-0.049  Sum_probs=96.9

Q ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCC
Q 012075          270 NLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSD  349 (471)
Q Consensus       270 ~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
                      +..+.++......++..++.++.|++.||  +|||+....+...... ......  .  .                  ++
T Consensus        33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~-~~~~~~--~--~------------------~~   87 (375)
T 2gfp_A           33 REGAVQSVMGAYLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFML-ATLVAV--T--T------------------SS   87 (375)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTHHHHHTT--SCCCCCCHHHHHHHHH-HHHHHH--H--H------------------HH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHH-HHHHHH--H--h------------------cc
Confidence            44456677778899999999999999999  8999988776655422 211111  0  0                  12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH--HHHHhh
Q 012075          350 FAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDTHKVSLLSQLVVNW--SLTTIS  427 (471)
Q Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~~i~~~~~~~~~p~~~~~~~~~--~~~~~~  427 (471)
                      +....+..++.|++.+...+....++.|.+++ ++++++++..+...++|..++..+.......   .+..+  .+.++.
T Consensus        88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~  163 (375)
T 2gfp_A           88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYER-TQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVL  163 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHH
Confidence            23456677788999998888888899998832 3457889999998888888888776543221   12222  222222


Q ss_pred             hhhhhheeeeeeccCCCccC
Q 012075          428 YPLLVILVLLAVKDEKSPEE  447 (471)
Q Consensus       428 ~~~~i~~~~~~~pet~~~~~  447 (471)
                      .+......++.+||+++.++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (375)
T 2gfp_A          164 CAGVTFSMARWMPETRPVDA  183 (375)
T ss_dssp             HHHHHCCCCCSSCCCSTTTC
T ss_pred             HHHHHHHHHHHCcccCCCCc
Confidence            22333335567888865543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.47  E-value=3.4e-07  Score=93.39  Aligned_cols=145  Identities=12%  Similarity=-0.011  Sum_probs=83.3

Q ss_pred             HHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhhhhhHH-HhhhhhhhccCC
Q 012075           66 ALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHH-KHQAFAIAAGAILGIGAGLL-WAAEGAIMTSYP  143 (471)
Q Consensus        66 ~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~-~~~~~li~~r~l~G~g~g~~-~~~~~~~i~~~~  143 (471)
                      .......++.++++.+.||+|||+.++.+.....+........... .+.+..++.-++...+.+.. .+....|.+|+.
T Consensus       320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f  399 (491)
T 4gc0_A          320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF  399 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence            3344455677899999999999999998887665533322211111 22222222222222222221 234567899999


Q ss_pred             CCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCC-ccccccchhHHHHHHHHHHHHHHHhccCCCc
Q 012075          144 PPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNE-AVSVNDGTYIGFMCFMSAGALLSLVILPPGR  210 (471)
Q Consensus       144 ~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~  210 (471)
                      |.+.|++.+|+......+|..+++.+.-.+...... ........++++.++.+++.+...++.||.+
T Consensus       400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            999999999999988888888877653111100000 0001122355666666666666666666543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.33  E-value=1e-06  Score=89.98  Aligned_cols=105  Identities=8%  Similarity=0.013  Sum_probs=75.3

Q ss_pred             HHHHHHHhhhchhhhhhhccchhHHHH-----HHHHHHHHHHHHHHhhh------cccchHHHHHHHHHHhhhhhHHHhh
Q 012075           66 ALYTTFTIFGILGGGIYNILGPQVTLI-----SACSTYVLYAGSFLYYN------HHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        66 ~~~~~~~i~~~~~g~l~d~~Grk~~l~-----i~~~~~~~~~~~~~~~~------~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      .......++.++.+++.||+|||+...     ++.++..+.........      ...+.+.++++-++.|++.+...+.
T Consensus       327 ~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  406 (491)
T 4aps_A          327 LNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPV  406 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred             cchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence            333444566788899999999986544     44443332111111100      0126677888889999999988888


Q ss_pred             hhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHH
Q 012075          135 EGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIP  170 (471)
Q Consensus       135 ~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  170 (471)
                      ...++.|..|+++||+.+|++.....+|..+|+.+.
T Consensus       407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~  442 (491)
T 4aps_A          407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV  442 (491)
T ss_dssp             HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999886

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.78  E-value=0.00015  Score=74.32  Aligned_cols=115  Identities=14%  Similarity=-0.007  Sum_probs=76.5

Q ss_pred             cccchhhhHHHHHHHHHHHHhhhhhhhcccCCC-CccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCC
Q 012075          269 FNLRTRGLNNVFYWGAQMLGSVGIGYIFDFSFP-TRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSG  347 (471)
Q Consensus       269 ~~~~~~~l~~~~~~i~~i~g~~~~g~l~D~~~~-gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (471)
                      .+..+.++....+.++..++.++.|++.||  + |||+....+.++.. ++.+..    .+    .        +     
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~~~~~~~~~-~~~~~~----~~----~--------~-----  106 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTILWLSLIYC-VGHAFL----AI----F--------E-----  106 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHHHHHHHHHH-HHHHHH----HH----T--------S-----
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHH-HHHHHH----HH----h--------c-----
Confidence            344456777778899999999999999999  7 99997766554432 111111    10    0        0     


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHH---HHHHHHHHHHHHHHhhhcc
Q 012075          348 SDFAGPFVLYFCYGLLDAMFQSMVYWVIGALADDSETLSRYS---GFYKGVQSAGAAVAWQVDT  408 (471)
Q Consensus       348 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~s~g~~i~~~~~~  408 (471)
                      .++...++..++.|++.+...+....++.|.+++. +++++.   +.++...++|.+++..+..
T Consensus       107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A          107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS-NKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT-TTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            13334566677788888888888888999998432 334444   4477777777777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	471
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.69
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.87
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.7

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.2e-24  Score=214.83  Aligned_cols=321  Identities=15%  Similarity=0.084  Sum_probs=190.7

Q ss_pred             CChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHhhhhhHHHh
Q 012075           55 VDTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLY-YNHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~-~~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      .++.+.+...+....+.+++++++|+++||+|||+++.++.++..+....... ....++.+.+++.|++.|++.|..++
T Consensus        56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  135 (447)
T d1pw4a_          56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  135 (447)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhh
Confidence            34555677788888889999999999999999999999999877654332221 11235788999999999999999999


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHH-HhccC-CCcc
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLS-LVILP-PGRV  211 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~-p~~~  211 (471)
                      +...++.|+.|+++||++++++.....+|..+|+.+........   .+|++..++. ..+..+..++. ++.++ |++.
T Consensus       136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  211 (447)
T d1pw4a_         136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF---NDWHAALYMP-AFCAILVALFAFAMMRDTPQSC  211 (447)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT---CCSTTCTHHH-HHHHHHHHHHHHHHCCCSSTTT
T ss_pred             HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh---hcccccchhh-hhhHHHHHHHHHHhcccchhhc
Confidence            99999999999999999999999999999999998764332211   2355444433 33333333333 33332 2221


Q ss_pred             cc--CCCCccc--cccCCCHHHH---HHH-HHHHhcchhHHHHHHHHHHhHh-Hhh--hcccccccc--ccccchhhhHH
Q 012075          212 IR--DDGTHCT--NIKYSNVSTE---ITQ-VLKLFSNWKMLLIFPASWASNF-FYS--YQFNNVNGL--QFNLRTRGLNN  278 (471)
Q Consensus       212 ~r--~~~~~~~--~~~~~~~~~~---~~~-~~~~~~~~~~ll~~~~~~~~~~-~~s--~~~~~~~~~--~~~~~~~~l~~  278 (471)
                      ..  .++.+..  ++.+++..++   .+. ..+.+++|.++......+.... .+.  ...+.+...  +++....+...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (447)
T d1pw4a_         212 GLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY  291 (447)
T ss_dssp             CCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHH
T ss_pred             ccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhh
Confidence            11  1111000  0000000000   011 1123455555444433332221 111  111233322  23444556667


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHH
Q 012075          279 VFYWGAQMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYF  358 (471)
Q Consensus       279 ~~~~i~~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (471)
                      ....++.+++.++.|++.||  .+|++........+........    . .. .         . ..  .+.....++.+
T Consensus       292 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~-~~-~---------~-~~--~~~~~~~~~~~  351 (447)
T d1pw4a_         292 FLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATI----V-YW-M---------N-PA--GNPTVDMICMI  351 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHH----H-TT-S---------C-CT--TCHHHHHHHHH
T ss_pred             hcchhhhhhhhhhhhhhhhh--ccccccccccchhHHHHHHHHH----H-HH-h---------c-cc--ccHHHHHHHHH
Confidence            77889999999999999999  6776654443332211111111    1 10 0         0 01  22334455666


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 012075          359 CYGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGA  400 (471)
Q Consensus       359 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~g~  400 (471)
                      +.|++.....+..+.+..|.++ ++.++++.|+.+.+.+++.
T Consensus       352 ~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~g  392 (447)
T d1pw4a_         352 VIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGG  392 (447)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHH
Confidence            6777777777777878888884 3455888898888776643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.8e-16  Score=154.62  Aligned_cols=317  Identities=10%  Similarity=-0.039  Sum_probs=164.0

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHhhhhhHHHhh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYN-HHKHQAFAIAAGAILGIGAGLLWAA  134 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~li~~r~l~G~g~g~~~~~  134 (471)
                      ++...+...++......++++++|+++||+|||+.++++.++..+......... ........+..+.+.+.+.+.....
T Consensus        41 s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (417)
T d1pv7a_          41 SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNA  120 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccc
Confidence            455666777788888889999999999999999999998877665433322211 0111223456666666666655444


Q ss_pred             hhhhhccCCC--CCchhhHHHHHHHHHHhhhhhhhHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHhccCCCccc
Q 012075          135 EGAIMTSYPP--PNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRNEAVSVNDGTYIGFMCFMSAGALLSLVILPPGRVI  212 (471)
Q Consensus       135 ~~~~i~~~~~--~~~RG~~~g~~~~~~~~G~~iG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~p~~~~  212 (471)
                      ......+..+  .+++.+..+........+..+|+.++..+...     .+++..+.. .....+..++..+..++++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         121 GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-----NNQFVFWLG-SGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHH-HHHHHHHHHHHHSSCCCSCSS
T ss_pred             hhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-----cccccccch-hhHHHHHHHHHHHHhcccccc
Confidence            3333322222  23455667777777888888888886433211     122222222 222222222333333322211


Q ss_pred             cCCCCccccccCCCHHHHHHHHHHHhcchhHHHHHHHHHH----hHhHhhhc--ccc-cc-ccccccchhhhHHHHHHHH
Q 012075          213 RDDGTHCTNIKYSNVSTEITQVLKLFSNWKMLLIFPASWA----SNFFYSYQ--FNN-VN-GLQFNLRTRGLNNVFYWGA  284 (471)
Q Consensus       213 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~~s~~--~~~-~~-~~~~~~~~~~l~~~~~~i~  284 (471)
                      ++++++....+++..++.   ..+..++++..........    ........  +.. .. ....+....+.......++
T Consensus       195 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (417)
T d1pv7a_         195 ATVANAVGANHSAFSLKL---ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELL  271 (417)
T ss_dssp             SCSSHHHHSCCCCCCHHH---HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhcccccccc---cccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccc
Confidence            111111111111111111   1122222222111111111    11111110  001 00 0111222234455667788


Q ss_pred             HHHHhhhhhhhcccCCCCccceeeehhhhHHHHHHHHHHhHhhhhcccCCCCCCCccCCCCCCCCchhHHHHHHHHHhhH
Q 012075          285 QMLGSVGIGYIFDFSFPTRRKRGFVGIVVVALLGSAIWAGGLANQLNYSHDKPPAKLDFKNSGSDFAGPFVLYFCYGLLD  364 (471)
Q Consensus       285 ~i~g~~~~g~l~D~~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  364 (471)
                      ..++..+.+++.||  .|||+....+..++.. ....    +.    +.              ++.....+..++.+++.
T Consensus       272 ~~~~~~~~~~l~~r--~~~~~~~~~~~~~~~~-~~~~----~~----~~--------------~~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         272 NASIMFFAPLIINR--IGGKNALLLAGTIMSV-RIIG----SS----FA--------------TSALEVVILKTLHMFEV  326 (417)
T ss_dssp             HHHHHTTHHHHHHH--HCHHHHHHHHHHHHHH-HHHH----HH----TC--------------CCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhcc--cccccchhhhHHHHHH-hhhc----cc----cc--------------cccchhhHHHHHHHHHH
Confidence            88999999999999  7888866655443311 1111    10    00              22334566777888888


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhHHHHHHH-HHHHHHHHHHhhhc
Q 012075          365 AMFQSMVYWVIGALADDSETLSRYSGFYK-GVQSAGAAVAWQVD  407 (471)
Q Consensus       365 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~s~g~~i~~~~~  407 (471)
                      +...+....++.|.++ ++.++++.++.. ...++|.+++..+.
T Consensus       327 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHHHHHHHHHHHHSC-GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999984 345578888643 44556666665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.2e-09  Score=102.10  Aligned_cols=103  Identities=10%  Similarity=-0.050  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhhhhHHHhhhhhhhccCCC
Q 012075           65 TALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLYYNHHKHQAFAIAAGAILGIGAGLLWAAEGAIMTSYPP  144 (471)
Q Consensus        65 ~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~~~~~~~~~~li~~r~l~G~g~g~~~~~~~~~i~~~~~  144 (471)
                      +.......++..+.+++.||+|||+.+.++.++..+.....   ...++.+.+++.-++.|++.+..++....++.|..|
T Consensus       266 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  342 (417)
T d1pv7a_         266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS---SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFE  342 (417)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcc---ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            33344556677899999999999999999988766533222   346889999999999999999999999999999999


Q ss_pred             CCchhhHHHHHH-HHHHhhhhhhhHHH
Q 012075          145 PNRKGTYISIFW-SIFNMGGVIGGLIP  170 (471)
Q Consensus       145 ~~~RG~~~g~~~-~~~~~G~~iG~~i~  170 (471)
                      +++||+..++.. ....+|..+||.+.
T Consensus       343 ~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         343 VRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999854 56678889998876

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=7.5e-08  Score=94.07  Aligned_cols=115  Identities=11%  Similarity=-0.074  Sum_probs=81.9

Q ss_pred             ChhhhhHHHHHHHHHHHhhhchhhhhhhccchhHHHHHHHHHHHHHHHHHHh--hhcccchHHHHHHHHHHhhhhhHHHh
Q 012075           56 DTTAANNANTALYTTFTIFGILGGGIYNILGPQVTLISACSTYVLYAGSFLY--YNHHKHQAFAIAAGAILGIGAGLLWA  133 (471)
Q Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grk~~l~i~~~~~~~~~~~~~~--~~~~~~~~~li~~r~l~G~g~g~~~~  133 (471)
                      +........+.......++.++++++.||++||+..........+...+...  ....++.+..+++-++.|++.+...+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  362 (447)
T d1pw4a_         283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM  362 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHH
T ss_pred             ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566666777788899999999999876544444332222222111  11245677778888889999888888


Q ss_pred             hhhhhhccCCCCCchhhHHHHHHHHHHh-hhhhhhHHH
Q 012075          134 AEGAIMTSYPPPNRKGTYISIFWSIFNM-GGVIGGLIP  170 (471)
Q Consensus       134 ~~~~~i~~~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~  170 (471)
                      ....+..|..|++.||+++|+.....++ |.++++.+.
T Consensus       363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~  400 (447)
T d1pw4a_         363 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  400 (447)
T ss_dssp             HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999998877666 567777775