Citrus Sinensis ID: 012089
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | yes | no | 0.949 | 0.827 | 0.633 | 1e-169 | |
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | no | no | 0.970 | 0.851 | 0.526 | 1e-144 | |
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | no | no | 0.968 | 0.842 | 0.521 | 1e-142 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.951 | 0.8 | 0.317 | 4e-61 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.968 | 0.801 | 0.317 | 1e-56 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | yes | no | 0.575 | 0.304 | 0.274 | 1e-29 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | yes | no | 0.569 | 0.300 | 0.271 | 7e-27 | |
| Q7ZWU7 | 876 | Extended synaptotagmin-2- | N/A | no | 0.602 | 0.324 | 0.269 | 6e-26 | |
| Q5FWL4 | 872 | Extended synaptotagmin-2- | N/A | no | 0.602 | 0.325 | 0.269 | 6e-26 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | no | no | 0.687 | 0.383 | 0.25 | 1e-25 |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function desciption |
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Score = 593 bits (1530), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/461 (63%), Positives = 377/461 (81%), Gaps = 14/461 (3%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF +SVLG++GF IG+P+GL++GFF+ IYS+P+ E P PL E L DLLP
Sbjct: 1 MGFFTSVLGIIGF-VIGIPIGLILGFFVLIYSQPSHQ--EYPPARPLVETSISVLLDLLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLW+KNPDYERVDW N+F+S MWPYLDKA+C +R++ QP+F +Y G F IESIEFEN
Sbjct: 58 DIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFEN 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT++G++ YETNE +L+ EP+++WAGNPNIVLVLK+LS RI VQLVDLQ FA
Sbjct: 118 LSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAI 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
R+ LKPL+PTFPCF +VVSLME+PHVDFG+K+LGGD+MSIPGLY+++Q+ I + V+ +
Sbjct: 178 VRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y WPQ EIPILD+S+ ++KKPVG+LHV ++RA LLKKD LGTSDPYVKLSLTGEKLP
Sbjct: 238 YHWPQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KK+NLNPEWNE+FKL+VK+P SQ+LQL+VFDWDKVGGHDRLGMQ++PL+ + P E
Sbjct: 298 KKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGE 357
Query: 361 TKEFTLDLLKHTN-ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
KEF LDL+K++N + D D K+RG++ V+L YVPF+E+SIK RK S ++S
Sbjct: 358 RKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIK--------RRKESREEKS 409
Query: 420 S-DEEALSGAGLLSVLVQGAEDVEG-ENHNNPYAIILYKGD 458
S D++ LS AGLLSV VQ A+DVEG + H+NPYA++L++G+
Sbjct: 410 SEDDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAVVLFRGE 450
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function description |
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Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/471 (52%), Positives = 342/471 (72%), Gaps = 14/471 (2%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MG +S++LGV+GFGF G +G+++G++LFIY + D VE+P + PL ELD+ + + P
Sbjct: 1 MGIISTILGVIGFGF-GTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIP+WVKNPD++R+DWLN+ + MWPY+DKAIC ++ A+PI E +KI+S+EFE
Sbjct: 58 EIPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLG+LPP+ G++VY T++ +++ME +++WAGNPNI++V K + TVQ++DLQ++A
Sbjct: 118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYAT 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVP+FPCFA + VSLM++P VDFG+K+LG D+M+IPGLY+F+Q+ I VA +
Sbjct: 178 PRITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP+T + I+D S A+KKPVG+L VKV++A KL KKD LG SDPYVKL+L+G+K+P
Sbjct: 238 YLWPKTLNVQIMDPSK-AMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKT VK NLNPEWNE F LVVKEPESQ LQL V+DW++VG HD++GM ++ LK LTP E
Sbjct: 297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
K TL+LLK +P K RG++VVE+ Y PFK+D I + K
Sbjct: 357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAP------ 410
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDK---KRTKKNSRP 468
E S GLL V+V AED+EG+ H NP +L++G++ KR KKN P
Sbjct: 411 -EGTPSTGGLLVVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREP 460
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May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function description |
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Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/474 (52%), Positives = 342/474 (72%), Gaps = 18/474 (3%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S++LG GFG +G+ LGL++G+ LF+Y PND V++P + + + D + +LP
Sbjct: 1 MGFFSTILGFCGFG-VGISLGLVIGYVLFVYLLPND--VKDPEIRSIADQDPKAMLRMLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVKNPD++RVDW+NRFL MWPYLDKAIC + A+PI +E K+KI+S+EFE
Sbjct: 58 EIPLWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLG+LPPT G++VY T+E +L+MEP L+WA NPNI++ +K + TVQ+VDLQ+FA
Sbjct: 118 LTLGSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQ 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVP+FPCFA + VSLME+PHVDFG+K+ G D+MSIPGLY+F+Q+ I VA +
Sbjct: 178 PRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP+T +PILD + A ++PVGI+HVKVVRA L KKD +G +DP+VK+ L+ +K+P
Sbjct: 238 YLWPKTLVVPILDPAK-AFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPS 296
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK KNLNPEWNE FK V++P++Q+L+ V+DW++VG +++GM ++ LK + P E
Sbjct: 297 KKTTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDE 356
Query: 361 TKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND 417
K FTL+L K + + P D K RGK+ VEL Y PF E+ + K + +
Sbjct: 357 HKAFTLELRKTLDGGEDGQPPD-KYRGKLEVELLYKPFTEEEM-----PKGFEETQAV-- 408
Query: 418 QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRT---KKNSRP 468
Q + E + G+L V+V AEDVEG++H NPY I +KG++++T KKN P
Sbjct: 409 QKAPEGTPAAGGMLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDP 462
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Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 152/479 (31%), Positives = 261/479 (54%), Gaps = 31/479 (6%)
Query: 11 LGFGFIGLPLGLLVGFFL---FIYSKPNDDQVEEPLVTPLCELDTIPLFD----LLPEI- 62
+GF +G+ +GLLVG + F+ + + ++ L + + + D L PE
Sbjct: 1 MGF-IVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFY 59
Query: 63 PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLT 122
P WV + +++ WLN L+ +WPY+D+A ++ + +P+ ++Y + S+ F LT
Sbjct: 60 PSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLT 118
Query: 123 LGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLK-LLSFRITVQLVDLQIFAAP 181
LGT+ P G+ V + ++N + +E ++W GNPNIVL +K L+ + +Q+ ++
Sbjct: 119 LGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVF 178
Query: 182 RITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIY 241
R+ +PLV FPCF + VSL E+ +DF +K++GGDI +IPGL + I++ I V
Sbjct: 179 RLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238
Query: 242 IWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
WP IPI+ D S + +K PVG+L VK+V+A L KD +G SDP+ K+ + +
Sbjct: 239 TWPVRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREK 297
Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
K++ +LNP WNE+F+ VV++ +Q L ++++D + V + +G + L L P
Sbjct: 298 TKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPG 357
Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS---IKFSSVSKKYSRKGSGN 416
+ K+ L L+K I +D K RG++ +EL Y+P+ + F + S + N
Sbjct: 358 KVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKN 415
Query: 417 DQSSDEEALSGA-------GLLSVLVQGAEDVEGEN---HNNPYAIILYK--GDKKRTK 463
D + +E A S G+LSV V AE++ ++ +PY ++ K G K +T+
Sbjct: 416 DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTR 474
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 249/497 (50%), Gaps = 41/497 (8%)
Query: 1 MGFLSSVLGVLGFG-FIGLPL--GLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFD 57
MGFL FG FIG+ + GL+V F + + + +
Sbjct: 1 MGFL--------FGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRK 52
Query: 58 LLPE--IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIES 115
LLP P WV ++++WLN L +WPY+++A ++++ +P+ ++Y+ + S
Sbjct: 53 LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LAS 111
Query: 116 IEFENLTLGTLPPTIYGIRVYETNE--NQLVMEPALRWAGNPNIVLVLK-LLSFRITVQL 172
++F TLGT+ P G+ + E+ N + ME ++W GNP IVL +K LL + +++
Sbjct: 112 LKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEV 171
Query: 173 VDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKC 232
++ R+ KPLV FPCF + SL E+ +DF +K++GG++ SIPG+ I++
Sbjct: 172 KNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEET 231
Query: 233 ITKYVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK 290
I + WP IPIL D S + + KPVG L VKVV+A L KD +G SDPY
Sbjct: 232 IRDAIEDSITWPVRKIIPILPGDYSDLEL-KPVGKLDVKVVQAKDLANKDMIGKSDPYAI 290
Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
+ + KKT +LNP WNE+F+ +V++ +Q L ++VFD + VG +G
Sbjct: 291 VFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQ 350
Query: 351 VPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIK-------- 401
VPL L P + K+ L L+K I +D K RG++ +EL Y P KE +K
Sbjct: 351 VPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYS 408
Query: 402 ---FSSVSKKYSRKGSGNDQ----SSDEEALSGAGLLSVLVQGAED---VEGENHNNPYA 451
V K S D +S ++ + G+LSV V AED V+ + +
Sbjct: 409 LTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFV 468
Query: 452 IILYKGDKKRTKKNSRP 468
+I K + ++K P
Sbjct: 469 VITLKKSETKSKTRVVP 485
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 20/291 (6%)
Query: 59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEF 118
L ++P WV PD ERV+WLN+ + MWPY+ + + +P+ S K + F
Sbjct: 144 LQQLPAWVNFPDVERVEWLNKVVGQMWPYIGMYVEKMFQDKVEPLVRSSSAHLK--AFTF 201
Query: 119 ENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQ 176
+ LG P I G++ Y N + +++++ L + G+ I + +K + + +Q
Sbjct: 202 TKVHLGEKFPRINGVKSYTKNVDKREVILDLQLSYNGDVEINVEVKKM---CKAGVKGVQ 258
Query: 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKY 236
+ R+ L PL+P P + + ++RPH+D L +++ IPG+ F I
Sbjct: 259 LHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGL-TNVLEIPGVSDFSDSMIVDM 317
Query: 237 VAGIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD------FLGTSDP 287
+A + P + +P+ + A+ + P G+L + ++ A L+ KD G SDP
Sbjct: 318 IASHLVLPNRFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDP 377
Query: 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
Y L + + K+ K+NLNP+W E ++ VV E Q L++ ++D D
Sbjct: 378 YAVLRIGNQNF---KSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLYDED 425
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May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 145/287 (50%), Gaps = 19/287 (6%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+P W+ PD ERV+W N+ + +WPYL + +R +P E S + + F
Sbjct: 109 HLPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPKIREKS--IHLRTFTFTK 166
Query: 121 LTLGTLPPTIYGIRVY--ETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
L G P + G++V+ + N ++ ++ + + G+ I + L+ +I + +Q+
Sbjct: 167 LYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQ----KIRGGVSGVQLQ 222
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + V +++PH+ L +++ +PG+ + + +A
Sbjct: 223 GTLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGL-TNLLDMPGINELSDSLLEDLIA 281
Query: 239 GIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD-FL---GTSDPYVKL 291
+ P +P+ LD +++ + P G++ V ++ A KL +KD FL G SDPY K+
Sbjct: 282 AHLVLPNRVTVPVKKGLDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKV 341
Query: 292 SLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
S+ L ++ KNLNP WNE F+ +V E Q L++ ++D D
Sbjct: 342 SIG---LQHCRSRTIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYDED 385
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May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 20/304 (6%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWPY+ + I R T +P + + F
Sbjct: 114 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFSFTK 171
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G+ P I G++VY N + Q++++ + + G I L +K R V+ +Q+
Sbjct: 172 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 229
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 230 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 288
Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
+ P +P++ +A + P G+L + + A L+ KD G SDPY
Sbjct: 289 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 348
Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ L + ++ V K+NLNP+WNE ++ +V E Q L++++FD D D LG
Sbjct: 349 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 404
Query: 350 LVPL 353
L+ L
Sbjct: 405 LIDL 408
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May play a role as calcium-regulated intrinsic membrane protein. Xenopus laevis (taxid: 8355) |
| >sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 20/304 (6%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWPY+ + I R T +P + + F
Sbjct: 110 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFNFTK 167
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G+ P I G++VY N + Q++++ + + G I L +K R V+ +Q+
Sbjct: 168 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 225
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 226 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 284
Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
+ P +P++ +A + P G+L + + A L+ KD G SDPY
Sbjct: 285 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 344
Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ L + ++ V K+NLNP+WNE ++ +V E Q L++++FD D D LG
Sbjct: 345 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 400
Query: 350 LVPL 353
L+ L
Sbjct: 401 LIDL 404
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus laevis (taxid: 8355) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 161/348 (46%), Gaps = 24/348 (6%)
Query: 7 VLGVLGFGFIGLPLG-LLVGFFLFIYSKPNDDQVEEPLVTPLCELD----TIPLFDLLPE 61
+L V G++GL +L+ L + + + L L L+ + L +
Sbjct: 47 LLPVYALGYLGLSFSWVLLALGLLAWCRRSRGLKASRLCRALALLEDEEQAVRLGVRACD 106
Query: 62 IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENL 121
+P WV PD ER +WLN+ + MWP++ + I R T +P + + F +
Sbjct: 107 LPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANAHLSTFSFTKV 164
Query: 122 TLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
+G P + G++VY N + Q++++ + + GN I L +K R V+ +QI
Sbjct: 165 DVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIHG 222
Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
R+ L+PL+ P + + + +P ++ L +++ IPGL I ++
Sbjct: 223 TMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIISN 281
Query: 240 IYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYVK 290
+ P +P++ +A + P G+L + + A L KD G SDPY
Sbjct: 282 YLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGI 341
Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
+ + + ++ V K+NL+P+WNE ++ +V E Q L++++FD D
Sbjct: 342 IRVGNQIF---QSKVIKENLSPKWNEVYEALVYEHPGQELEIELFDED 386
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| 224097856 | 547 | predicted protein [Populus trichocarpa] | 0.978 | 0.842 | 0.760 | 0.0 | |
| 255588268 | 541 | calcium lipid binding protein, putative | 0.968 | 0.842 | 0.734 | 0.0 | |
| 224113059 | 544 | predicted protein [Populus trichocarpa] | 0.957 | 0.829 | 0.734 | 0.0 | |
| 225449024 | 544 | PREDICTED: extended synaptotagmin-2 [Vit | 0.963 | 0.834 | 0.716 | 0.0 | |
| 356535625 | 545 | PREDICTED: tricalbin-2-like [Glycine max | 0.966 | 0.834 | 0.689 | 0.0 | |
| 356574609 | 545 | PREDICTED: tricalbin-1-like [Glycine max | 0.966 | 0.834 | 0.687 | 0.0 | |
| 359481536 | 546 | PREDICTED: extended synaptotagmin-2-like | 0.989 | 0.853 | 0.651 | 1e-180 | |
| 449527095 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.966 | 0.830 | 0.652 | 1e-177 | |
| 449464400 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.966 | 0.830 | 0.65 | 1e-177 | |
| 297741612 | 547 | unnamed protein product [Vitis vinifera] | 0.989 | 0.851 | 0.645 | 1e-176 |
| >gi|224097856|ref|XP_002311084.1| predicted protein [Populus trichocarpa] gi|222850904|gb|EEE88451.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/464 (76%), Positives = 413/464 (89%), Gaps = 3/464 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFL++++ +LGFG IGLP GLL+GFFLF+YSKP D V++P+V PL ELDT L D+LP
Sbjct: 1 MGFLNTLVELLGFG-IGLPFGLLIGFFLFVYSKPKD-TVKDPVVRPLHELDTGALLDILP 58
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLWVK PDYERVDWLN+FLSDMWPYLDKA+CA +R T Q +F EY GK+KI++IEFE+
Sbjct: 59 DIPLWVKCPDYERVDWLNKFLSDMWPYLDKAVCAMIRRTTQSMFAEYIGKYKIQAIEFEH 118
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPPTI+G++VYETNE LVMEPA+RWAGNPNIVLVLKL+S ++TVQLVDLQIFAA
Sbjct: 119 LTLGTLPPTIHGLKVYETNEKDLVMEPAIRWAGNPNIVLVLKLMSLQVTVQLVDLQIFAA 178
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVPTFPCFA ++VSLMERPHVDFG+KILGGD+MSIPGLY+F+Q+ I K VA +
Sbjct: 179 PRVALKPLVPTFPCFANILVSLMERPHVDFGLKILGGDVMSIPGLYRFVQEMIKKQVASL 238
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT +IPILD+S+V IKKPVGILHVKVVRA KLLK D LGTSDPYVKL+LTGEKLP
Sbjct: 239 YLWPQTLDIPILDSSTVIIKKPVGILHVKVVRAKKLLKADLLGTSDPYVKLNLTGEKLPA 298
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQLVPLK+LTP E
Sbjct: 299 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQLVPLKVLTPRE 358
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
TK+FTLDLLKHTNISD +D KQRG+IVVELTYVPF+EDSIKFS GS + +S+
Sbjct: 359 TKDFTLDLLKHTNISDSRDKKQRGQIVVELTYVPFREDSIKFSGPLDGNGEMGSVSGRST 418
Query: 421 DEEA-LSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK 463
EEA LSGAGLLSV+VQGAEDVEG+ H+NPYA++L++G++KRTK
Sbjct: 419 PEEAPLSGAGLLSVMVQGAEDVEGKRHHNPYALVLFRGERKRTK 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255588268|ref|XP_002534553.1| calcium lipid binding protein, putative [Ricinus communis] gi|223525050|gb|EEF27829.1| calcium lipid binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/463 (73%), Positives = 408/463 (88%), Gaps = 7/463 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLS+VLG LGFGF LP+GLL+GFFLF+YS+P V++P+V PL ELD+ L D+LP
Sbjct: 1 MGFLSTVLGFLGFGFG-LPIGLLLGFFLFVYSQPEHHDVKDPVVRPLHELDSSTLEDILP 59
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+ L DMWPYLDKAIC+ +R+TA+PIF EY G++ IE+IEFE+
Sbjct: 60 EIPLWVKCPDYERVDWLNKLLLDMWPYLDKAICSTIRSTAEPIFAEYIGQYMIEAIEFEH 119
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPP I+G++VYETNE LVMEPA++WAGNPNI+L++KL+S + VQL+DLQIFAA
Sbjct: 120 LTLGTLPPVIHGLKVYETNEKDLVMEPAIKWAGNPNIILMIKLMSLPVRVQLIDLQIFAA 179
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRI LKPLVP+FPCFA +VVSLMERPHVDFG+K+LGGD+MSIPGLY+ +Q+ I K VA +
Sbjct: 180 PRIALKPLVPSFPCFANIVVSLMERPHVDFGLKVLGGDLMSIPGLYRLVQETIKKQVARL 239
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQ +IP+LD+S+VAIKKPVGILHVKVVRA KLLK D LGTSDPYVKLSLTGEKLP
Sbjct: 240 YLWPQFLDIPVLDSSTVAIKKPVGILHVKVVRAMKLLKADLLGTSDPYVKLSLTGEKLPA 299
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVKKKNLNPEWNENFKL+VK+P+SQ+LQLQVFDWDKVGGHDRLGMQ+VPLK+LTP E
Sbjct: 300 KKTTVKKKNLNPEWNENFKLIVKDPQSQVLQLQVFDWDKVGGHDRLGMQVVPLKVLTPGE 359
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEF LDLLKHTNISDP+D K+RG+IVVELT+VPFK+DS KF+ G+++SS
Sbjct: 360 AKEFILDLLKHTNISDPQDKKRRGQIVVELTFVPFKQDSAKFTEPV------DGGSEKSS 413
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK 463
DEE LSGAGLLSV+VQGAEDVEGE+H+NPYA++L++G+KK+TK
Sbjct: 414 DEEKLSGAGLLSVIVQGAEDVEGEHHSNPYALVLFRGEKKKTK 456
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113059|ref|XP_002316376.1| predicted protein [Populus trichocarpa] gi|222865416|gb|EEF02547.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/471 (73%), Positives = 399/471 (84%), Gaps = 20/471 (4%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFL++ L LGFG IGLP GLL+GFFLF+YSKP D V++P+V PL ELDT L D+LP
Sbjct: 1 MGFLNAFLEFLGFG-IGLPFGLLIGFFLFVYSKPKD--VKDPVVRPLHELDTDALLDILP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLWVK PDYERVDWLN+FL DMWPYLDKAICA +R+T +P+F EY GK+KIE+IEFE+
Sbjct: 58 DIPLWVKCPDYERVDWLNKFLLDMWPYLDKAICAMIRSTTKPMFAEYIGKYKIEAIEFEH 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPP I G++VYET E LVMEPA+RWAGNPNIVLVL+LLS R+ QLVDLQIFAA
Sbjct: 118 LTLGTLPPIIQGLKVYETMEKDLVMEPAIRWAGNPNIVLVLQLLSVRLRFQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVPTFPCFA +VVSLMERPHVDFG+KILGGD+MSIPGLY+ I K VA +
Sbjct: 178 PRVALKPLVPTFPCFANIVVSLMERPHVDFGLKILGGDVMSIPGLYRL--DMIKKQVASL 235
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT +IP++DAS++ IKKPVGILHVKVVRA KLLK D LGTSDPYVKL LTGEKLP
Sbjct: 236 YLWPQTLDIPVIDASTMVIKKPVGILHVKVVRAKKLLKADILGTSDPYVKLCLTGEKLPA 295
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQ VPLK+LTP E
Sbjct: 296 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQFVPLKVLTPRE 355
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND--- 417
TKEFTLDLLKHTNISD +D KQRG+IV+ELTYVPF+EDSI+FS GND
Sbjct: 356 TKEFTLDLLKHTNISDSQDKKQRGQIVLELTYVPFREDSIEFSG-------PLDGNDRRG 408
Query: 418 -----QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK 463
SS +E+LSGAGLLSV+VQGAEDVEG++H NPYA++ ++G++KRTK
Sbjct: 409 SASGRSSSGDESLSGAGLLSVIVQGAEDVEGKHHINPYALVHFRGERKRTK 459
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449024|ref|XP_002272997.1| PREDICTED: extended synaptotagmin-2 [Vitis vinifera] gi|296086005|emb|CBI31446.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/458 (71%), Positives = 397/458 (86%), Gaps = 4/458 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLSS+L ++GFG IG+P GLLVGFFLF+YS+P D V++P V PL ELD+ L DLLP
Sbjct: 1 MGFLSSLLDIVGFG-IGIPFGLLVGFFLFVYSQPKD--VQDPDVRPLSELDSSTLMDLLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+P WVKNP+Y+RVDWLN+F+ +MWPYLDKAIC +R+ AQPIF EY G ++IE+IEFE
Sbjct: 58 ELPFWVKNPNYDRVDWLNKFILNMWPYLDKAICDTIRSMAQPIFAEYIGMYQIEAIEFEK 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPP ++GI+VYETNE +L MEPA++WAGNPNI+LVLK L FRIT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPILHGIKVYETNEKELAMEPAIKWAGNPNIILVLKWLPFRITIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVPTFPCFA++V+SLME+PHVDFG+KILGGDIMSIPGLY+F+Q+ I + VA +
Sbjct: 178 PRITLKPLVPTFPCFASLVLSLMEKPHVDFGLKILGGDIMSIPGLYRFVQETIKREVAKL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILDA++ AIKKPVGILHVKVVRA KLLK DFLG SDPYVKLSL+GE+LP
Sbjct: 238 YLWPQTLEIPILDAATGAIKKPVGILHVKVVRALKLLKMDFLGASDPYVKLSLSGERLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FKL+V++P++Q+LQL V+DWDKVG HD+LGMQLVPLKLLTPHE
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLIVRDPQAQVLQLYVYDWDKVGAHDKLGMQLVPLKLLTPHE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
T+EFTLDL K+TN+SDP+ KQRGKIVVELT+ PFKED +S Y RK S ++S
Sbjct: 358 TQEFTLDLFKNTNLSDPQQ-KQRGKIVVELTFDPFKEDHECYSGPLDGYGRKESRISRAS 416
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
D++ SGAGLL V +QGAEDVEG+ HNNPYA+IL++G+
Sbjct: 417 DDDTPSGAGLLLVTIQGAEDVEGQRHNNPYAVILFRGE 454
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535625|ref|XP_003536345.1| PREDICTED: tricalbin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/458 (68%), Positives = 387/458 (84%), Gaps = 3/458 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLSS LGV GF +G+PLGLLVGFFLF+YS+ +V++P+V P+ EL L +LLP
Sbjct: 1 MGFLSSFLGVFGFA-VGIPLGLLVGFFLFVYSETK--RVKDPVVRPISELGPNSLQELLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+FL DMWP+LD AIC +R+T QPIF EY GK++I++I+F+
Sbjct: 58 EIPLWVKTPDYERVDWLNKFLLDMWPFLDTAICKIIRSTTQPIFAEYIGKYQIKAIDFDE 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT+ G++V ETNE +LVME ++WAGNPNIV+ L + S +IT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGMKVLETNEKELVMEQVIKWAGNPNIVVSLYVSSLKITIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITL+PLVPTFPCFA +VVSLME+PHVDFG+ + GGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRITLRPLVPTFPCFANIVVSLMEKPHVDFGMNVSGGDIMSIPGLYRFVQETIKKQVANL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILD S+VAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP
Sbjct: 238 YLWPQTLEIPILDESTVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FK+VVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L P+E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKIVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLNPYE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEF LDLLK TN+++ K RGKIVV+LT+VPFKEDS KF S+ YSRK SG D S
Sbjct: 358 NKEFILDLLKDTNLNETPHKKPRGKIVVDLTFVPFKEDSNKFGGPSEGYSRKESGIDIVS 417
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
D+E GAGLLS+++Q AE+VEG++HNNP+A++ ++G+
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGE 455
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574609|ref|XP_003555438.1| PREDICTED: tricalbin-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/458 (68%), Positives = 383/458 (83%), Gaps = 3/458 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MG +SS LG+LGF +G+PLGL VGFFLF+YS+ V++P+V P+ EL L +LLP
Sbjct: 1 MGLVSSFLGILGFA-VGIPLGLFVGFFLFVYSETK--HVKDPVVRPISELGPNALQELLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+FL D WP+LD AIC +R+ AQPIF EY GK++I++IEF+
Sbjct: 58 EIPLWVKTPDYERVDWLNKFLLDTWPFLDTAICKIIRSRAQPIFFEYIGKYQIKAIEFDK 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT+ GI+V ETN +LVME ++WAGNP IVL + + S +ITVQLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGIKVLETNGKELVMEQVIKWAGNPEIVLSVYVASLKITVQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+TL+PLVPTFPCFA +VVSLME+PHVDFG+ +LGGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRVTLRPLVPTFPCFANIVVSLMEKPHVDFGMNVLGGDIMSIPGLYRFVQETIKKQVANL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILD SSVAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP
Sbjct: 238 YLWPQTLEIPILDESSVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FKLVVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L +E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLKAYE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEFTLDLLK TN+++ K RGKIVV+LT+VPFKEDS KF S+ YSRK SG D S
Sbjct: 358 NKEFTLDLLKDTNLNETPRKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGIDIVS 417
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
D+E GAGLLS+++Q AE+VEG++HNNP+A++ ++G+
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGE 455
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481536|ref|XP_002276374.2| PREDICTED: extended synaptotagmin-2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 308/473 (65%), Positives = 397/473 (83%), Gaps = 7/473 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V P++ PL +LD+ L DLL
Sbjct: 1 MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC +R+T +PIF EY GKF+I+SI+FE
Sbjct: 58 EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117
Query: 121 LTLGTLPPTIYGIRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
L+LGTL P ++GI+ ETNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI
Sbjct: 118 LSLGTLSPIVHGIKAQETNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQISM 177
Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA
Sbjct: 178 VPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVAS 237
Query: 240 IYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
+Y+WPQT E+PILDA IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+LP
Sbjct: 238 LYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLP 297
Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP+
Sbjct: 298 AKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTPN 357
Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS + ++ R SG +++
Sbjct: 358 MTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGERA 417
Query: 420 SDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRT---KKNSRPC 469
+++ SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K T KK PC
Sbjct: 418 TEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPC 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527095|ref|XP_004170548.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/460 (65%), Positives = 381/460 (82%), Gaps = 5/460 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S ++G++GFG IG+PLGL+VGFF FIYSKP D+V++P++ P+ ELD+ L +++P
Sbjct: 1 MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK+PD++RVDWLN+FL MWP LDKAIC+++R A+P+F EY GKF+I+SIEFE
Sbjct: 58 EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S RI +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLRIRIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVP FPCF +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP EIPILDAS A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357
Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
TKE TLDLLK +TNI++ ++ K RG++VVEL + PF+E+S KFSS S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
++ + GAGLLSV +QGA VEG+ H+NPYA++ ++G+
Sbjct: 418 DLQDDFVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGE 457
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464400|ref|XP_004149917.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/460 (65%), Positives = 381/460 (82%), Gaps = 5/460 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S ++G++GFG IG+PLGL+VGFF FIYSKP D+V++P++ P+ ELD+ L +++P
Sbjct: 1 MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK+PD++RVDWLN+FL MWP LDKAIC+++R A+P+F EY GKF+I+SIEFE
Sbjct: 58 EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S +I +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLQIRIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVP FPCF +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP EIPILDAS A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357
Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
TKE TLDLLK +TNI++ ++ K RG++VVEL + PF+E+S KFSS S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
++ + GAGLLSV +QGA VEG+ H+NPYA++ ++G+
Sbjct: 418 DLQDDCVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGE 457
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741612|emb|CBI32744.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 306/474 (64%), Positives = 395/474 (83%), Gaps = 8/474 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V P++ PL +LD+ L DLL
Sbjct: 1 MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC +R+T +PIF EY GKF+I+SI+FE
Sbjct: 58 EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117
Query: 121 LTLGTLPPTIYG-IRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
L+LGTL P ++G +TNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI
Sbjct: 118 LSLGTLSPIVHGKYSSIKTNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQIS 177
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA
Sbjct: 178 MVPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVA 237
Query: 239 GIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL 298
+Y+WPQT E+PILDA IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+L
Sbjct: 238 SLYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERL 297
Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
P KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP
Sbjct: 298 PAKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTP 357
Query: 359 HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
+ TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS + ++ R SG ++
Sbjct: 358 NMTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRT---KKNSRPC 469
++++ SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K T KK PC
Sbjct: 418 ATEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPC 471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7XA06 | SYT3_ARATH | No assigned EC number | 0.6334 | 0.9490 | 0.8277 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 471 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 5e-42 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-28 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 8e-27 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 9e-26 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 6e-23 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 7e-20 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 2e-19 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 2e-18 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-17 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 5e-17 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 5e-17 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 1e-16 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 4e-16 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 8e-16 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 9e-16 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-15 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-15 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-14 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 4e-14 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 4e-14 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-13 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-13 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 2e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-13 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 3e-13 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 3e-13 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 6e-13 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 7e-13 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 8e-13 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 2e-12 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 7e-12 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-11 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 3e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 5e-11 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-10 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 1e-10 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 2e-10 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 3e-10 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 3e-10 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 3e-10 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 4e-10 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 6e-10 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 6e-10 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 6e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-09 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-09 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 4e-09 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 1e-08 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 3e-08 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 8e-08 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 9e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-07 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 4e-07 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 4e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 4e-07 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 1e-06 | |
| cd08392 | 128 | cd08392, C2A_SLP-3, C2 domain first repeat present | 2e-06 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 3e-06 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 4e-06 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 5e-06 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 1e-05 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 2e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 4e-05 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 5e-05 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-04 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 2e-04 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 2e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-04 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 3e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 3e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 6e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.002 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 0.003 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 5e-42
Identities = 119/451 (26%), Positives = 189/451 (41%), Gaps = 73/451 (16%)
Query: 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFI-----YSKPNDDQVEEPLVTPLCELDTIPLF 56
S + G LGF F L +LV +++ + D V++ L E
Sbjct: 165 SVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLE------- 217
Query: 57 DLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESI 116
DYE V+WLN FL WP ++ +I V E F I+++
Sbjct: 218 ------------NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDAL 264
Query: 117 EFENLTLGTLPPTIYGIRVY-ETNENQLVME---------------PALRWAGNPNIVLV 160
+ TLG+ PP I GIR Y T + +VM+ + R + NP I LV
Sbjct: 265 ALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLV 324
Query: 161 LKL----LSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG 216
+K SF + + + DL R+ ++ L+ +P T+ L+E P DF + LG
Sbjct: 325 VKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLG 383
Query: 217 G-----DIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVV 271
G DI +IPGL +FIQ+ I + + + P + I I + +G++ VK+
Sbjct: 384 GDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIK 443
Query: 272 RASKLLKKDFL--GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQI 329
A L K D GT DPY+ ++ + + KT VKK LNP WNE F +++ +
Sbjct: 444 SAEGLKKSDSTINGTVDPYITVTFSDRVIG--KTRVKKNTLNPVWNETFYILL-NSFTDP 500
Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLL-----TPHETKEFTLDLLKHTNISDPKDMKQRG 384
L L ++D++ +G + L LL +E EF + K G
Sbjct: 501 LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR------------NTKNVG 548
Query: 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415
++ +L + P ED + + +G
Sbjct: 549 RLTYDLRFFPVIEDKKELKGSVEPLEDSNTG 579
|
Length = 1227 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-28
Identities = 40/83 (48%), Positives = 50/83 (60%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L KD G SDPYVK+SL G+K KKT V K LNP WNE F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 326 ESQILQLQVFDWDKVGGHDRLGM 348
E L+++V+D+D+ G D +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-27
Identities = 46/104 (44%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L KD G SDPYVK+SL G++ KT V K LNP WNE F+ V +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQ--KFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDL 368
ES L ++V+D D+ D LG +PL LL + E L L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-26
Identities = 41/90 (45%), Positives = 53/90 (58%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
L VK++ A L KD G SDPYVK+SL G+ KKT V K LNP WNE F+ V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
PE L+++V+D D+ G D +G +PL
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLS 90
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-23
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L D G SDP+VK L GEK+ KT KK LNP WNE+F++ V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+L+++V+DWD+ G D LG + L L P ET E TL L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-20
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
+G+L V+VVR + L +DF +SDPYV L+L +K+ KT V KKNLNP WNE L V
Sbjct: 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56
Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
P + + +L+VFD D D +G
Sbjct: 57 PNPMAPL-KLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLN 311
SV+ L +K+++A +L KDF GTSDP+VK+ L LP KK T VK+KNLN
Sbjct: 8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYL----LPDKKHKLETKVKRKNLN 63
Query: 312 PEWNENFK---LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
P WNE F ++ + ++L LQV D+D+ +D +G +PL + E + F DL
Sbjct: 64 PHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-18
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
LH ++RA L D G SDPYVKL+L K +T K NPE+NE
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 324 EPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
E + L+L V D D+ G+D LG +PLK L P++TK+F + L
Sbjct: 77 TEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 3e-17
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V+ A L KD GTSDP+V++ G+ L +T+V KK+ P WNE F+ + E
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTL---ETSVVKKSCYPRWNEVFEFELMEG 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTL 366
L ++V+DWD V +D LG + ++ L E F L
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 5e-17
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKL 320
IL VKV+ L KKD G SDPYVK+SL ++ +T KK LNP+WNE F
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
V E ++L +VFD +++ D LG VPL
Sbjct: 61 RVNPREHRLL-FEVFDENRLTRDDFLGQVEVPL 92
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-17
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLNPEWNENF--K 319
L V +++A+ L D GTSDPYVK+ L LP KK T V +K LNP +NE F K
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYL----LPDKKKKFETKVHRKTLNPVFNETFTFK 73
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL-LTPHETKE 363
+ E ++ L V+D+D+ HD +G VPL H T+E
Sbjct: 74 VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEE 118
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-16
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK+ LNP +NE+F
Sbjct: 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLG 347
V P QI L + V D+D++G +D +G
Sbjct: 75 V--PFEQIQKVHLIVTVLDYDRIGKNDPIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-16
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 264 GILHVKVVRASKLLKKD------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN 317
G+L + V+ A L+ KD G SDPYV + + + K+ V K+NLNP+WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57
Query: 318 FKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
++ VV E Q L++++FD D D LG + L
Sbjct: 58 YEAVVDEVPGQELEIELFDED-PDKDDFLGRLSIDLG 93
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 8e-16
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV 321
L V ++R L D G SDP+VKL L + K KT VKKK LNPE+NE F
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLG 347
+K + + L++ V+D D +D +G
Sbjct: 73 IKHSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 9e-16
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L + + L +D GTSDPYVK G K +K T+ KNLNP W+E F L +++
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK 385
+Q L ++VFD+D+ D +G V L L ++ E L L DP + G
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL------EDPNSDEDLGY 112
Query: 386 IVVELTYVP 394
I + +T P
Sbjct: 113 ISLVVTLTP 121
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
G L VKV+RAS L D G SDP+ L L +L +T K LNPEWN+ F +K
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
+ +L++ V+D DK + LG +PL + E K + LK + +
Sbjct: 58 DIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYA---LKDKKLRTRA----K 109
Query: 384 GKIVVELTYV 393
G I++E+ +
Sbjct: 110 GSILLEMDVI 119
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-15
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 264 GILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G+L V VV A L KD G SDPY LS+ ++ KT LNP+WN +
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
+ ++Q+L+L ++D D+ G D LG + L+ + + + + K
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117
Query: 382 QRGKIVVELT 391
G+I ++ +
Sbjct: 118 VSGEIHLQFS 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V V++A L D G SDPYVK+SL G+KL KKT+VKK LNP +NE +F +
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
++ E L + V D D VG ++ +G
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 4e-14
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
V VVRA L KD G SDPY+K+ L +K+ + + LNP + + F+L P +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGN 62
Query: 328 QILQLQVFDWDKVGGHDRLG 347
IL++ V D+D +G D +G
Sbjct: 63 SILKISVMDYDLLGSDDLIG 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-14
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+ V +++A L D GTSDPYVK+ L +++ KKT +KK+ LNP +NE+F
Sbjct: 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFT 365
+ P ++ L + V D D++ +D +G + K E K +
Sbjct: 75 I--PLERLRETTLIITVMDKDRLSRNDLIGKIYLGWK-SGGLELKHWK 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
+ G L + + L D G SDP+VKL L + + KT V KK LNP WNE F +
Sbjct: 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVWNEEFTI 1094
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V +L + V DWD +D LG + L L P T + L T I
Sbjct: 1095 EVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVL 1150
|
Length = 1227 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-13
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
L V+V+RA+ + K D L T D YV+L L + EK K+T K ++NP WNE F+ +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEK---KRTKTIKNSINPVWNETFEFRI 58
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+ +L+L V D D V D LG L + L E T L
Sbjct: 59 QSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSL 103
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKL-----------------------SLTGE 296
+ P+ +L V V+ A LL KD G SDPY L ++ +
Sbjct: 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83
Query: 297 KLP---WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
+P K T VK + LNP WNE F+ V++ + L L ++D D D LG +PL
Sbjct: 84 TVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHDD----DFLGCVNIPL 139
Query: 354 KLLTP 358
K L
Sbjct: 140 KDLPS 144
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-13
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
++ + +V L D G SDPYVK L EK K+ V K LNP+W E F L + +
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFD 57
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+SQIL+++V+D D + +G + L L +T L+L
Sbjct: 58 DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-13
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V+V A L+ D G SDPYVKL L + +KT KK LNP WNE F +K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 324 -EPESQILQLQVFDWDKVGGHDRLG 347
+ + L ++V+DWD+ +D +G
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMG 99
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-13
Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S+ K +GIL+VK+++A L +DF GT+DPY K+ L ++ K++ + KK LNPE++
Sbjct: 8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67
Query: 316 ENFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFT 365
E+F V E + L++ ++D+D+ + +G+ +PL + E +
Sbjct: 68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 6e-13
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
+++VRA L G SDPYV L T K KT LNP W+E F+L V E
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 328 QILQLQVFDWDKVGGHDRLG---MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
+ V+D VG HD G ++L P + +E LDL D + G
Sbjct: 65 LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-------DTQ-----G 112
Query: 385 KIVVELT 391
++++ ++
Sbjct: 113 RLLLRVS 119
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 7e-13
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 271 VRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNENFKLVV----- 322
KL KKDF G SDP++++S E W +T V K LNP W F + +
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL 366
+ + I +++V+D+D G HD +G L L EF L
Sbjct: 66 GDYDRPI-KIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 8e-13
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNEN--FK 319
G L + +++A L D G SDPYVK+SL G +L KKT+VKK LNP +NE F
Sbjct: 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGM 348
+ + ++ L + V D+D+VG ++ +G+
Sbjct: 74 VPPENVDNVSLIIAVVDYDRVGHNELIGV 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + V+ A L K+D DP+ +++ G + T V KK L+P+WNE+F L V
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQT--HSTDVAKKTLDPKWNEHFDLTVG-- 57
Query: 326 ESQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
S I+ +QVFD K D+ LG + + P + + L+ SD ++ R
Sbjct: 58 PSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSD--NLSVR 115
Query: 384 GKIVVEL 390
GKIVV L
Sbjct: 116 GKIVVSL 122
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-12
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKL 320
G L V + L D S+PYVK+ L +K +KT+VKK NP +NE K
Sbjct: 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKEFTL 366
+ + + ++ LQL V+ D+ G + LG +PL L +++ + L
Sbjct: 74 HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENF------ 318
L V+V+ L K GT DP+ +++L K K+T VKKK NP ++E F
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 319 ---------KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
K+ ++ E L+++++ V G D LG +PL+ L
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-11
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
L V +++A L + + DP+VK+ L ++ ++ VK+K NP ++E F V
Sbjct: 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75
Query: 325 PESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
E Q L+L V+D D+ H +G L PLK L + DL
Sbjct: 76 KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENF--KLV 321
L V V++A L K D G +DPYVK++L +++ KKT VKK LNP +NE+F +
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
+E E ++ V D D+V ++ +G
Sbjct: 77 SEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-10
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 265 ILHVKVVRASKL--LKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKN-LNPEWNENF 318
L +K++ +L K D DPYV++ + G KT V K N NP WNE F
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
+ V PE L+ V+D D G D LG +PL L
Sbjct: 63 EFDVTVPELAFLRFVVYDEDS-GDDDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 264 GILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
G+L V + RA+ L K DF G+SDPYV S P T + +K+LNP W E + ++V
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60
Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362
E + L +++D D+ DRLG + LK L
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNW 103
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ES 327
VV L G D K++ G K KKT V + LNP WNE F+ +
Sbjct: 2 VVSLKNLPGL--KGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPD 56
Query: 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV 387
+ L++ V D++KVG + +G V L+ L E T LL D I
Sbjct: 57 ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL------DSNGRPTGATIS 110
Query: 388 VELTYVP 394
+E++Y P
Sbjct: 111 LEVSYQP 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V V + L D DPYV+L L K +KT+VKK NLNP ++E F+ V
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 324 EPESQILQLQVFDWDKVGGHDR----LGMQLVPLK--LLTPHETKEFTL 366
E + L V + R LG L+ L L+ T+ + L
Sbjct: 78 LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
P + V V A L K+D G +DPYV + GE + ++ V+K L+PE++
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57
Query: 322 VKEPESQILQLQVFDWDK 339
K+P S I +QV W+
Sbjct: 58 RKKPRSPIK-IQV--WNS 72
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 265 ILHVKVVRA-------SKLLKKDFLGTS-------DPYVKLSLTGEKLPWKKTTVKKKNL 310
K+ RA S ++ DPYV++S G+K+ KT+VKK +
Sbjct: 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSY 57
Query: 311 NPEWNENFKLVVKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPL 353
NPEWNE P + +++Q+ DWD+VG D +G + L
Sbjct: 58 NPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDL 101
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L + V A KL DPYV++++ G+ P KKT V KK NP+WNE+F ++V
Sbjct: 4 LQITVESA-KLKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVT-- 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
L+ +V+ + LG + L + + E + TL+L
Sbjct: 59 PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLS 107
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V+++ A LL D G+SDP+VK+ L +P KT VKKK L P ++E+F+
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 322 V----KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
V E +L V D+D +G +D G +PL +
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V+VV A L+ KD G+S YV+L G+K K+T K K+LNP WNE V +P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 326 E---SQILQLQVFD 336
+ +L++ V++
Sbjct: 59 SRLSNLVLEVYVYN 72
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVV 322
G L V ++ A L DFLG DPYV + ++ +K+ V K NPEWNE FK V
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTV 57
Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLK 354
+ P L L++ D D D +G + LK
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLK 92
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-10
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 20/132 (15%)
Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKL---V 321
V V++A LL K GT+D YV + L EK T+VK+K +P W E +F+L +
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE----FTLDLLKHTNISDP 377
LQL V + +G LG +PL L + + F L+ S P
Sbjct: 59 SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLE-------SKP 111
Query: 378 -KDMKQRGKIVV 388
KD K+RG+I V
Sbjct: 112 GKDDKERGEIEV 123
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-09
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
+L V + A L PYV+L++ +K+ VK++ NP W E F +V+
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRN 57
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKE--FTLD 367
PE+Q L+++V D LG +PL L P T + F LD
Sbjct: 58 PENQELEIEVKDDKTGK---SLGSLTLPLSELLKEPDLTLDQPFPLD 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-09
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 263 VGILHVKVVRASKLLKKDFLGTS-DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
+G+L V + A L D +G + DPYV S++ + +T VKK NP WNE ++
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRREL-ARTKVKKDTSNPVWNETKYIL 59
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL-KLLTPHETKEFTLDLLKHTNISDPKDM 380
V ++ L L V+D++ +G L LL E + T +LL++
Sbjct: 60 VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG-------- 110
Query: 381 KQRGKIVVELTYVP 394
K G++ +L + P
Sbjct: 111 KPVGELNYDLRFFP 124
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-09
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
G+L + + +A+ L + +G DPYV++ + G +T LNP W+E + V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVK--GRTVTISNTLNPVWDEVLYVPVT 58
Query: 324 EPESQILQLQVFDWDKVGGHDR-LG 347
P +Q + L+V D++KV G DR LG
Sbjct: 59 SP-NQKITLEVMDYEKV-GKDRSLG 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL-TGEKL-PWKKTTVKKKNLNPEWNENFKLV 321
G L+V ++RA +LL+ D SDP+VK+ L G KL KKT+ + ++P +NE+F
Sbjct: 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73
Query: 322 VKEPESQILQLQVFDWD 338
V + E + + L +
Sbjct: 74 VPQEELENVSLVFTVYG 90
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 41/97 (42%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK------KTTVKKKNLNPE 313
K G LHV V A L GTSD +VK L LP K KT V KK++NP
Sbjct: 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL----LPDKSKKSKQKTPVVKKSVNPV 78
Query: 314 WNENF--KLVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
WN F V E SQ L+L V+D DK+ +D LG
Sbjct: 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-08
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV 322
LHV V++ L D SDPYVK L +K +KT+VKKK LNP +NE + V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
+ E +++L L V+ D +G + LG V L
Sbjct: 77 EREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-08
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + VV A L+ KD GTSDPYV + + K K+T +NLNP WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 326 ESQILQLQVFDWD 338
+I +++V+D D
Sbjct: 60 SDRI-KVRVWDED 71
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
+G L V +V L + G SDPY ++S+ ++ KT V LNP+WN + + V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFV 70
Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
K+ E +L + VFD D D LG
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLG 95
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE 326
V+V+ A +L+ G DP VK+ + G+K K T+VKK P +NE F E
Sbjct: 7 RVRVIEARQLVG----GNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESP 59
Query: 327 S----QILQLQVFDWDKVGGHDRLG 347
+I+++ V+D + +G
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 264 GILHVKVVRASKLLK-KDFLGTS---DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
G++ +++ + L K+ T DP+V +S G ++ +T+ ++ LNP +NE
Sbjct: 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-GRRV--FRTSWRRHTLNPVFNERLA 57
Query: 320 LVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
V E +Q +V D DK +D +
Sbjct: 58 FEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK------KKNLNPEWNEN 317
L V V++A L +D +PYVK+ L LP + K KK LNPEWN+
Sbjct: 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYL----LPDRSEKSKRRTKTVKKTLNPEWNQT 71
Query: 318 FKL-VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
F+ V+ + L++ V+D+D+ G +D LG ++ L
Sbjct: 72 FEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVVKE 324
L VK ++A + G+S+PY L + ++ P K +++ +K NP W+E+F +
Sbjct: 1 LLVKNIKA--NGLSEAAGSSNPYCVLEM--DEPPQKYQSSTQKNTSNPFWDEHFLFELS- 55
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
P S+ L +V+D K LG+ +VP L + + L D G
Sbjct: 56 PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSV----SG 111
Query: 385 KIVVELTYVP 394
I VE ++
Sbjct: 112 SITVEFLFME 121
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 287 PYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344
PYVK+ L +K +KT VKK +NP +NE K VV+ QLQV W
Sbjct: 39 PYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKR 98
Query: 345 R--LGMQLVPL 353
R LG L+PL
Sbjct: 99 RVFLGEVLIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENF 318
L V+V+ S L K+ GT DPY ++L +K K+T VKKK NP+++E F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAF 54
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 285 SDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV 340
S+PYVK L +K +KT++K+ NP +NE K + E++ LQL V+ +D+
Sbjct: 37 SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRF 96
Query: 341 GGHDRLGMQLVPL 353
G + LG +PL
Sbjct: 97 GRNTFLGEVEIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V VV+A L+ + T+DP+VK+ L G K+ KKT+VK+ + NP +NE V
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 324 EPESQILQLQV 334
Q L L+V
Sbjct: 77 AIVLQDLSLRV 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 302 KTTVKKKNLNPEWN-ENFKLVVKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
KT V KK+LNP WN E F+ V + E Q LQ++V D D +D +G + L L
Sbjct: 35 KTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
P ++++ ++ + L V V+RA+ L D+ ++D YVK+ G++ K+T V N
Sbjct: 14 PNVNSNCCPTRRGLATLTVTVLRATGL-WGDYFTSTDGYVKVFFGGQE---KRTEVIWNN 69
Query: 310 LNPEWNENFKL-VVKEPESQILQLQVFDWDKVGGHDRLG 347
NP WN F V+ L+ +V+D D D LG
Sbjct: 70 NNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLG 108
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKT-TVKKKNLNPEWNENFKLVV 322
G L V V++A L K L DPY L + G KKT T + +PEW+E + +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEI 57
Query: 323 KEPESQILQLQVFDWDK 339
E + IL++ VFD DK
Sbjct: 58 TEDKKPILKVAVFDDDK 74
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V V+RA L + D T YVK+SL + + KKT V +P +NE +FK+
Sbjct: 17 LTVVVLRARGLRQLDHAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
++ ++ L L V V LG
Sbjct: 76 SRQLDTASLSLSVMQSGGVRKSKLLG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342
G PY +L L G+ + T VKKK NP WN + + +V + + + V D D+
Sbjct: 11 GLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD-DRDRH 67
Query: 343 HDRLGMQLVPL 353
LG + L
Sbjct: 68 DPVLGSVSISL 78
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 271 VRASKLLKKDFLGTSDPYVKLSL-TGEKLPWKK---TTVKKKNLNPEWNENFKLVVKEPE 326
+ LL KD L SDP+V + + TG W + T V K NLNP++ F + E
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66
Query: 327 SQILQLQVFDWD----KVGGHDRLG 347
Q L+ +V+D D + HD LG
Sbjct: 67 VQKLRFEVYDVDSKSKDLSDHDFLG 91
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L++++V L KD G+SDPY + + E +T K LNP W E + + + P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNE--VIIRTATVWKTLNPFWGEEYTVHLP-P 58
Query: 326 ESQILQLQVFDWDKVGGHDRLG 347
+ V D D + D +G
Sbjct: 59 GFHTVSFYVLDEDTLSRDDVIG 80
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L+ D + +VK L + L + + +N NP WNE V EP
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVL--RTRPSQTRNGNPSWNEELMFVAAEP 59
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
L L V D + LG ++PL +
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 286 DPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENF---KLVVKEPESQILQLQVFDWDKV 340
DPYVK L + K +KT V +K NP +NE L V++ + ++LQ+ V+ D +
Sbjct: 34 DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93
Query: 341 GGHDRLGMQLVPLK--LLTPHETKEFTL 366
++ LG +PLK L+ K + L
Sbjct: 94 VENEFLGGVCIPLKKLDLSQETEKWYPL 121
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENF 318
L V ++ L D GTSDPYVKL L EK KT V +K NP ++E F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETF 71
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
+S P+G + V V +A+ L + G SDPY + + +T LNP
Sbjct: 701 SSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVK--YRTIYGSSTLNPI 758
Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVG 341
WNE + V +Q L L+ D+++ G
Sbjct: 759 WNEILYVPVTSK-NQRLTLECMDYEESG 785
|
Length = 1227 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV--K 323
L ++++ A L K GT DPY +SL ++ +T +K LNP W E F
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
+ L D +G V L L + K+ L D + +
Sbjct: 56 DVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTPVDP-----DSEVQ 108
Query: 384 GKIVVELTY 392
G + + Y
Sbjct: 109 GSVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L+V+VV+A L ++DP V++ L K K + NPEWN+ F
Sbjct: 2 LYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIE---RTSNPEWNQVFAFSKDRL 54
Query: 326 ESQILQLQVFDWDKVGGHD 344
+ L++ V WDK D
Sbjct: 55 QGSTLEVSV--WDKDKAKD 71
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 265 ILHVKVVRASKLL---KKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
IL V ++ A L KD G++D Y ++ G K W +T + + NP WNE +
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYC-VAKYGPK--WVRTRTVEDSSNPRWNEQYTWP 57
Query: 322 VKEPESQILQLQVFD 336
V +P +L + VFD
Sbjct: 58 VYDP-CTVLTVGVFD 71
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.94 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.88 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.85 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.85 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.84 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.84 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.84 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.83 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.83 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.83 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.82 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.82 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.81 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.81 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.81 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.81 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.81 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.8 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.8 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.8 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.8 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.79 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.79 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.79 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.78 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.78 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.78 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.77 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.77 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.77 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.77 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.77 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.76 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.76 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.76 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.76 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.75 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.75 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.75 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.75 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.74 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.74 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.74 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.74 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.73 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.73 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.73 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.73 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.72 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.72 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.71 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.71 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.71 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.71 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.7 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.7 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.7 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.7 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.69 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.69 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.68 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.68 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.68 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.67 | |
| PLN03008 | 868 | Phospholipase D delta | 99.67 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.67 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.67 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.66 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.66 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.66 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.66 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.65 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.65 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.65 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.65 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.65 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.65 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.64 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.63 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.63 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.63 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.61 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.61 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.6 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.6 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.59 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.59 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.58 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.51 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.5 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.39 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.37 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.33 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.32 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.27 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.26 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.23 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.2 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.18 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.12 | |
| PLN02270 | 808 | phospholipase D alpha | 99.12 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.1 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.03 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.99 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.96 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 98.95 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 98.94 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.93 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.93 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.92 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 98.91 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 98.89 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 98.87 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.85 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 98.85 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 98.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 98.81 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 98.8 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 98.79 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 98.78 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 98.76 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 98.74 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 98.73 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 98.72 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 98.71 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.71 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 98.71 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 98.69 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.68 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 98.68 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.67 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 98.66 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 98.65 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 98.65 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 98.63 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 98.62 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 98.62 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 98.61 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 98.6 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.59 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 98.55 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 98.54 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 98.53 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 98.52 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 98.52 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 98.5 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 98.49 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.48 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 98.44 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 98.44 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 98.43 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 98.41 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 98.4 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 98.39 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 98.38 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 98.37 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.37 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 98.35 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 98.31 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 98.31 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 98.28 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 98.25 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 98.24 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 98.24 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 98.24 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 98.24 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 98.22 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.21 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 98.16 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 98.15 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 98.14 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 98.13 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 98.1 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 98.1 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 98.1 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 98.08 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 98.08 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 98.06 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 98.06 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.05 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 98.05 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 97.94 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 97.91 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 97.89 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 97.89 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.82 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.82 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.75 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 97.74 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 97.72 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 97.7 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.66 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 97.65 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 97.64 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 97.64 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 97.55 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 97.47 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 97.39 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 97.38 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.35 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.32 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 97.26 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 97.09 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 96.9 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 96.87 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.84 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 96.83 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 96.75 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 96.7 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 96.63 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 96.53 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 96.47 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.46 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.45 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.28 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.26 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 96.22 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.62 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.6 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 95.56 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.54 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 95.29 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 94.83 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.79 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 94.15 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.14 | |
| PLN03008 | 868 | Phospholipase D delta | 94.07 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 93.79 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 93.7 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.63 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 92.99 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 92.47 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 91.27 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 90.96 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 89.22 | |
| cd08697 | 185 | C2_Dock-D C2 domains found in Dedicator Of CytoKin | 89.17 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 89.05 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 87.35 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 87.11 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 87.06 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 86.2 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 83.3 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 82.95 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 80.86 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-62 Score=515.98 Aligned_cols=424 Identities=28% Similarity=0.510 Sum_probs=349.1
Q ss_pred cchhhhhhhhcccccchhHHHHHHhheeeeec----cCCcccccccccccccCCchhHhhhCCCCCCcccCCCCcchHHH
Q 012089 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSK----PNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWL 77 (471)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~Wl 77 (471)
|++||++|++||+++-+++.++. +.++|+ +.+|..|+...+.+.+ +++. .|+|++|||
T Consensus 165 ~v~Swifg~~~fs~~slffii~~---~~~vY~~~~~rv~rnird~v~~~~~~------ek~~---------nd~ESveWL 226 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILV---TMYVYRTCIKRVRRNIRDLVQQELSE------EKLE---------NDYESVEWL 226 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhh---------cchhHHHHH
Confidence 68999999999995555543333 333444 2222233333333322 2232 699999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCCCEEeEEEEEeC-CCCeEEEEeeeeEec---
Q 012089 78 NRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG--- 153 (471)
Q Consensus 78 N~~l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~vr~~~~-~~~~~~le~~~~~~~--- 153 (471)
|.+|+++||.+++.+++.|.+++|+.|+++.|+| |+.+.+.+||||++||||.+||.|+. +.+.+.||+++++..
T Consensus 227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~ 305 (1227)
T COG5038 227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDI 305 (1227)
T ss_pred HHHHHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccch
Confidence 9999999999999999999999999999999999 99999999999999999999999987 567899999999963
Q ss_pred ------------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEeeCCCCCCceeEEEEEcCCCceEEEEEEEeC-
Q 012089 154 ------------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG- 216 (471)
Q Consensus 154 ------------~~~i~l~~~~---~~-~~~~v~v~~l~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g- 216 (471)
+++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|++..+.++|+|.|.+||.++|+|
T Consensus 306 sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~ 384 (1227)
T COG5038 306 SDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGG 384 (1227)
T ss_pred hhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCC
Confidence 4678888865 44 789999999999999999999 99999999999999999999999999987
Q ss_pred ----CCccccchhhHHHHHHHHHhhhcccccCCceeeeccCcccccccCCceEEEEEEEEccccccCc--cCCCCCcEEE
Q 012089 217 ----GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVK 290 (471)
Q Consensus 217 ----~~i~~~P~l~~~i~~~i~~~l~~~~v~P~~~~i~l~~~~~~~~~~~~G~L~V~v~~a~~L~~~d--~~g~~DPyv~ 290 (471)
.||+++|||.+||+++|..++++|+++|+.+++++.+...+....+.|+|.|+|.+|++|...| ..+..|||++
T Consensus 385 ~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit 464 (1227)
T COG5038 385 DFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT 464 (1227)
T ss_pred CccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence 4789999999999999999999999999999999998766558889999999999999999988 6799999999
Q ss_pred EEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE-EEecc
Q 012089 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF-TLDLL 369 (471)
Q Consensus 291 v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~l~ 369 (471)
+...+... .||+++++++||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|.....+.. ...+.
T Consensus 465 ~~~~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~ 541 (1227)
T COG5038 465 VTFSDRVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL 541 (1227)
T ss_pred EEeccccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee
Confidence 99765433 3899999999999999999999764 67999999999999999999999999999987654332 33332
Q ss_pred cccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccC-cceEEEEEEeeeecCCCC-C-C
Q 012089 370 KHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALS-GAGLLSVLVQGAEDVEGE-N-H 446 (471)
Q Consensus 370 ~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~L~V~v~~Ak~L~~~-~-~ 446 (471)
.+.+..|+|+.+++|+|..++.....+. . +..+. .+|++.+++++.++|... + .
T Consensus 542 --------~~~k~vGrL~yDl~ffp~~e~k~~~~~s---------~------e~~ed~n~GI~k~tl~~~~~l~~~~~~~ 598 (1227)
T COG5038 542 --------RNTKNVGRLTYDLRFFPVIEDKKELKGS---------V------EPLEDSNTGILKVTLREVKALDELSSKK 598 (1227)
T ss_pred --------ccCccceEEEEeeeeecccCCccccccc---------c------CCcccCCcceeEEEeeccccccCccccc
Confidence 2478899999999999987664322111 0 11122 469999999999999873 2 3
Q ss_pred CCcEEEEEEcCeeeee-C---CCCCCcCC
Q 012089 447 NNPYAIILYKGDKKRT-K---KNSRPCLE 471 (471)
Q Consensus 447 ~dpyv~v~~~~~~~kT-k---~t~nP~Wn 471 (471)
..-|++++.+++...| + .+.+|.||
T Consensus 599 ~~~~a~l~~~~keV~st~~~k~t~~~~wn 627 (1227)
T COG5038 599 DNKSAELYTNAKEVYSTGKLKFTNHPSWN 627 (1227)
T ss_pred cceeEEEEecceEEeccceeeeccCCcee
Confidence 3344999999887743 2 89999997
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=227.93 Aligned_cols=178 Identities=33% Similarity=0.504 Sum_probs=153.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v~ 335 (471)
.++.....|+|+|++|++|+..|..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+.. ...+.|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 4667789999999999999999977889999999999998888899999999999999999999653 34789999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCC
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~ 415 (471)
|+|++++|+++|++.++|..+.......+|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887788899887653322 222389999999999
Q ss_pred CCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeee-----eeC---CCCCCcCC
Q 012089 416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK-----RTK---KNSRPCLE 471 (471)
Q Consensus 416 ~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~-----kTk---~t~nP~Wn 471 (471)
.+|+|+|.|.+||||.. .+.+||||++++....+ ||. ++.||+||
T Consensus 296 -----------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~n 351 (421)
T KOG1028|consen 296 -----------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFN 351 (421)
T ss_pred -----------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCccc
Confidence 57999999999999986 46899999999854322 554 99999998
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=165.65 Aligned_cols=119 Identities=21% Similarity=0.338 Sum_probs=101.7
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
.|.|+|+|++|++++..+ .|++||||++.+++++. +|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 79999999999987654 8888765 79999999999999753 468999999999999
Q ss_pred CCCeeEEEEEECc-ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 342 ~d~~lG~~~i~L~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+|++||++.+++. .+..++....|++|... ...+..|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777777889988642 123567999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=161.46 Aligned_cols=119 Identities=33% Similarity=0.448 Sum_probs=101.1
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec-----CCCCeEEEEEEEcCCC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV 340 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-----~~~~~L~v~v~d~d~~ 340 (471)
++|+|++|+||+.++..|.+||||++++++.+ ++|+++++++||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 489999999999999999999976 3567899999999998
Q ss_pred CCCCeeEEEEEECcccC--CCCceEEEEecccccCCCCCCCCccceEEEEEEE
Q 012089 341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (471)
++|++||++.++|+++. .+.....|++|..... ...+.+|+|++++.
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----KDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----CCccccceEEEEeC
Confidence 89999999999999987 5556678888864221 23467899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=157.79 Aligned_cols=120 Identities=33% Similarity=0.513 Sum_probs=105.9
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|++|+..|..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 78999999999999988999999999998632 35899999999999999999998765 5789999999999999999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
||++.++++++..+...+.|++|... .+.+..|+|++.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 99999999999988888999998542 12467899999999976
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=158.76 Aligned_cols=117 Identities=32% Similarity=0.444 Sum_probs=100.6
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||.|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999989999999999998743 4787764 5799999999999998766678999999998765
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
|++||++.+++.++..+.....|++|.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999876666677887753 24678999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=155.17 Aligned_cols=115 Identities=34% Similarity=0.513 Sum_probs=103.4
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
+++|+|++|++|+..+..+.+||||++++++.. ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999997644 48999999999999999999998766789999999999988999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
+||++.++|+++..+.....|++|.+ ..|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~-----------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED-----------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC-----------CCcEEEEEEEec
Confidence 99999999999998888899998842 269999999884
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-20 Score=158.76 Aligned_cols=122 Identities=30% Similarity=0.432 Sum_probs=103.8
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
......|.|+|+|++|++|+..|..|.+||||+++++... ++|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3566789999999999999999989999999999997654 4899999999999999999999877778999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCC-----CceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+..++|++||++.+++.++... .....+..+ ..+..|+|+|++++
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999998862 122233332 25778999999986
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=155.05 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=90.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC-ccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~-~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v 334 (471)
.+....|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+.. .....|.|+|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 35667899999999999999 3 36799999999975 34456799999999999999999999874 3467899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 367 (471)
||+|+++++++||++.++++++..+.+.+.|.+
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 999999999999999999998865555555644
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-20 Score=154.44 Aligned_cols=116 Identities=34% Similarity=0.483 Sum_probs=101.8
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|++|+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975434456999999999999999999999766567899999999988 8999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
||++.+++.++..+.....|++|.. +.+|+|++++..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~----------~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP----------QGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC----------CCCceEEEEEEe
Confidence 9999999999998888899998742 357999988864
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-20 Score=153.95 Aligned_cols=108 Identities=27% Similarity=0.380 Sum_probs=93.1
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcC----ccccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEEEEEc
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVFDW 337 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~----~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~v~d~ 337 (471)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+.. +....|.|+|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 49999999999842 33345689999999999999999999974 3346799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccC
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~ 373 (471)
+..++|++||++.+||.++..++....|++|.+..+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 988889999999999999999888899999876544
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=155.06 Aligned_cols=116 Identities=27% Similarity=0.401 Sum_probs=99.6
Q ss_pred EEEEEEEEccc---cccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 265 ~L~V~v~~a~~---L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
.|+|+|++|+| |+.+|..|.+||||++++++++. +|+++++++||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 89999999999999999987654 8999999999999999999997754 58999999999873
Q ss_pred ------CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 012089 342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (471)
Q Consensus 342 ------~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (471)
+|++||++.++|.++..+.....|++|... + ....+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999988888899988642 1 123567788875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-20 Score=158.96 Aligned_cols=100 Identities=45% Similarity=0.746 Sum_probs=91.8
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (471)
.+.|.|+|+|++|.||..+|..++|||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999999887 899999999999999999999986 56999999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 012089 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~~~~~ 364 (471)
++||+||.+.|+|..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999876654444
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=154.47 Aligned_cols=121 Identities=32% Similarity=0.467 Sum_probs=102.0
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC---CCeEEEEEEEcCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG 341 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~L~v~v~d~d~~~ 341 (471)
.|+|+|++|++|+..+..|.+||||++++++++ ++|++++++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998754 48999999999999999999987543 368999999999886
Q ss_pred -CCCeeEEEEEECcccC-CCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 342 -GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 342 -~d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
+|++||++.++++++. .+.....|++|.+.. ..++.+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455667888886431 1245799999999863
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=152.67 Aligned_cols=122 Identities=31% Similarity=0.516 Sum_probs=101.5
Q ss_pred ceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 4467999999999873 23469999999999999999999987 44679999999999888
Q ss_pred CCCeeEEEEEECcccCCCCceE-EEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+|++||++.++|.++..+.... .+..+. .+++..|+|+++++|+|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999998765543 333332 13667899999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=156.96 Aligned_cols=127 Identities=25% Similarity=0.310 Sum_probs=104.7
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
.|+|+|++|++|+.+|..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++....+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999999754 47888766 69999999999999876667999999999988899
Q ss_pred CeeEEEEEECcccCCC----CceEEEEecccccCC-CCCCCCccceEEEEEEEEEe
Q 012089 344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~y~p 394 (471)
++||++.++|+++..+ .....|++|...... .+.+..+..|+|+|+++|.+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998743 345788888654221 01123567899999999975
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=153.41 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=103.7
Q ss_pred eEEEEEEEEccccccCcc--CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~--~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
|+|+|+|++|++|+..+. .+.+||||++++++.. ++|++++++.||.|||+|.|.+.++..+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999997644 48999999999999999999998766789999999999988
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
++++||++.+++.++.. ......|++|..... ..+....|+|+|+++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence 99999999999999873 233567777754311 1235679999999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=152.10 Aligned_cols=122 Identities=30% Similarity=0.485 Sum_probs=104.8
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|+|+|++|++|+..|..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997654 48999999999999999999998766678999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
+||++.++|.++..+.....|++|.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667788888754322 234578899999876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-19 Score=150.71 Aligned_cols=122 Identities=25% Similarity=0.400 Sum_probs=103.1
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|.|+|++|+||+. ..|.+||||+++++.. ...++|+++++|.||.|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 6789999999999742 234699999999999999999999854 46789999999999889999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
||++.+++.++..+.....|++|..... .+.+..|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence 9999999999998777778888764321 135679999999999873
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=154.77 Aligned_cols=111 Identities=27% Similarity=0.376 Sum_probs=96.4
Q ss_pred CceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 012089 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~-d~ 337 (471)
..|.|+|+|++|+||+..+ ..|.+||||++++.++. ..++||+++++|+||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999999864 56889999999997654 34679999999999999999999998 56789999999 67
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccC
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~ 373 (471)
+.++++++||++.++|+++..+.....|++|.+...
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 888899999999999999987777788999876543
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=149.30 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=100.7
Q ss_pred EEEEEEEccccccCc-cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 266 L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
|+|+|++|+||+..+ ..|.+||||+++++.+. .++|+++++|+||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997543 36899999999999999999999753 469999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+||++.++++++..+...+.|++|.+.. ...+..|+|++++++
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999998877788899886531 123468999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-19 Score=152.35 Aligned_cols=105 Identities=31% Similarity=0.369 Sum_probs=92.2
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEe-e--cCCCCeEEEEEEEc
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW 337 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v-~--~~~~~~L~v~v~d~ 337 (471)
.|.|+|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 589999999999999999 8999999999998643 3457899999999999999999987 2 33467899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
+.++++++||++.++|.++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999977766777765
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=148.99 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=101.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+.......+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999997643 2478874 68999999999998765544689999999999999
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
|++||++.++|.++..+...+.|++|.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888888999986531 123567899999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-19 Score=149.40 Aligned_cols=115 Identities=34% Similarity=0.510 Sum_probs=100.6
Q ss_pred eEEEEEEEEccccccCcc------CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~------~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
|+|+|+|++|+||+..|. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998875 368999999999863 35899999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+.. +|++||++.+++.++..+.....|++|.. ...|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----------~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED----------VKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC----------CCCceEEEEEeC
Confidence 987 89999999999999987777788888742 367999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=151.47 Aligned_cols=110 Identities=34% Similarity=0.407 Sum_probs=95.3
Q ss_pred ccCCceEEEEEEEEccccccCccC-CCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
+....+.|+|+|++|+||+++|.. |.+||||++++.+.. ...++|+++++++||.|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 455678999999999999999875 899999999997654 345689999999999999999999863 335689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|||++.++++++||++.++|.++..+.....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877767778775
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=147.56 Aligned_cols=123 Identities=26% Similarity=0.363 Sum_probs=101.8
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
|.++|+|+|++|++|+..|..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 4899999999999999999988764 57899999999876
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.|++||++.+++.++.....++ ++|.... ...+++..|+|.+++++.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~--~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRT--LPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceE--EEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 5899999999999876554444 4443221 1235788999999998865
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=149.42 Aligned_cols=123 Identities=35% Similarity=0.516 Sum_probs=101.8
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (471)
.|+|+|++|++|+..|..|.+||||++++.+.. ...++|+++++|.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 2245899999999999999999998653 56899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCc------eEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
++|++||++.+++.++..+.. ...|++|.+. ...++..|+|+++++|+
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999886532 3466776542 11356799999999984
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.6e-19 Score=149.39 Aligned_cols=111 Identities=31% Similarity=0.420 Sum_probs=96.5
Q ss_pred cccCCceEEEEEEEEccccccCcc-CCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~-~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ...+||++++++.||.|||+|.|.+... ....|.|
T Consensus 9 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~ 88 (125)
T cd04029 9 SYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQL 88 (125)
T ss_pred EEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 456678999999999999998875 4889999999997644 3457899999999999999999998642 3568999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
+|||++..+++++||++.++|.++........|++|
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 999999999999999999999999988878888876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=148.86 Aligned_cols=112 Identities=30% Similarity=0.552 Sum_probs=98.1
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~ 335 (471)
.+....|.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 35667799999999999999999889999999999975544457999999999999999999998643 3568999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|++.+++|++||++.++|+++..+.....|++|+
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999999998777788888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=150.79 Aligned_cols=123 Identities=32% Similarity=0.444 Sum_probs=103.1
Q ss_pred ceEEEEEEEEccccccCc------------------------------cCCCCCcEEEEEEcCccccceeeeeecCCCCC
Q 012089 263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d------------------------------~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP 312 (471)
.|+|.|+|.+|++|+.+| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999887 346789999999986543 589999999999
Q ss_pred eEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 313 ~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
.|||+|.|.+... .+.|.|+|||++..+ +++||++.++++++..+...+.|++|..... ...+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~----~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG----KPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC----CCCCCCCEEEEEEEE
Confidence 9999999998754 468999999999764 6899999999999998888889999865311 123557899999998
Q ss_pred E
Q 012089 393 V 393 (471)
Q Consensus 393 ~ 393 (471)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-18 Score=145.28 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=95.8
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+..+....|.++|||++.. ++++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 89999999999887 78999999998643 4999999999999999999998776678999999999976 8899
Q ss_pred eEEEEEECcccCCCC-----ceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 346 LGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 346 lG~~~i~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
||++.++|+++.... ....|++|.... +.+.+|+|+|++.|
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence 999999999987532 245788876531 24678999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-18 Score=143.52 Aligned_cols=118 Identities=34% Similarity=0.518 Sum_probs=100.0
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. ...+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 4899999999999999999998653 57899999999988899
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
++||++.+++.++..+.. .|+.|... ....+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999976654 45665432 1234579999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-18 Score=149.61 Aligned_cols=124 Identities=28% Similarity=0.361 Sum_probs=98.4
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEee---------------cCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---------------EPES 327 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~---------------~~~~ 327 (471)
.|+|+|++|+||+. .+|.+||||++++.+. +...++|+++++|+||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 4689999999999864 223468999999999999999999985 1223
Q ss_pred CeEEEEEEEcCCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCC-----CCCCccceEEEEEE
Q 012089 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL 390 (471)
Q Consensus 328 ~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 390 (471)
..|.++|||++..++|++||++.++|.++..+ .....|++|.+.....+ ..+....|.|++++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999876 56678888866533221 12345667777764
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=145.04 Aligned_cols=96 Identities=36% Similarity=0.569 Sum_probs=85.3
Q ss_pred eEEEEEEEEccccccCccC-CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~v~v~d~d~ 339 (471)
|+|+|+|++|++|+..|.. +.+||||++++.+.....++|+++++|+||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999976544457999999999999999999987643 35689999999999
Q ss_pred CCCCCeeEEEEEECcccCCC
Q 012089 340 VGGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~ 359 (471)
.++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 99999999999999999843
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=146.37 Aligned_cols=112 Identities=28% Similarity=0.361 Sum_probs=93.7
Q ss_pred cccCCceEEEEEEEEccccccCccC-CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEE-ee--cCCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~--~~~~~~L~v~ 333 (471)
.+....+.|+|+|++|+||+..+.. |.+||||++++.+.....+||+++++++||.|||+|.|. +. +.....|.++
T Consensus 10 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~ 89 (128)
T cd08388 10 RYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFA 89 (128)
T ss_pred EEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEE
Confidence 3566678999999999999998876 899999999998665556799999999999999999994 43 2234579999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~l~ 369 (471)
|||++.+++|++||++.++|+++... .....|++++
T Consensus 90 V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 90 VLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99999999999999999999998654 4566777653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=146.31 Aligned_cols=110 Identities=35% Similarity=0.456 Sum_probs=96.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d 336 (471)
+....|.|+|+|++|+||+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 5556789999999999999999889999999999986655567999999999999999999998642 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
++.++++++||++.++|.++..+.....|++|
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999877777888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=146.71 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=93.9
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc---ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....+.|.|+|++|+||+..+..|.+||||++++.++. ...++|++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 4666779999999999999999888899999999998765 3467999999999999999999998643 4679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCC-ceEEEEe
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLD 367 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~ 367 (471)
+|||++..+++++||++.++|+++.... ....|++
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996543 3445554
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=142.86 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=100.3
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998765344568999999999999999999998755678999999999888999
Q ss_pred eeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 345 ~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+||++.++|.++.. +.....|+++. ..|++++.++|.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 33566888762 2699999998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=143.57 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=100.4
Q ss_pred ceEEEEEEEEccccccCccC----------CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEE
Q 012089 263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL 332 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~----------g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v 332 (471)
.|.|+|+|++|++|+..|.. +.+||||++.++++.. .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988753 6799999999986543 48899999999999999999996 3478999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCC--CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.|||++..+++++||++.++|.++.. +...+.|++|. ..|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 55678888873 4699999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=141.40 Aligned_cols=118 Identities=25% Similarity=0.420 Sum_probs=98.9
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|.|+|++|++|++.|..|.+||||++.+++.. .++|++++++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 35899999999999999999998643 4689999999999999999
Q ss_pred eEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEE
Q 012089 346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (471)
Q Consensus 346 lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (471)
||++.++++++..+ ...+.|++|.+. ...++..|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 99999999888754 335678887542 122457899999875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=144.66 Aligned_cols=111 Identities=28% Similarity=0.330 Sum_probs=92.9
Q ss_pred cccCCceEEEEEEEEccccccCccC-CCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....+.|.|+|++|+||+.+|.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+
T Consensus 9 ~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 9 HYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred EEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 3556679999999999999999875 999999999998664 3356899999999999999999998643 3569999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCC---ceEEEEec
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEFTLDL 368 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~l 368 (471)
.|||++.++++++||++.|+|.++.... ....|++|
T Consensus 89 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999999999999999999986542 33456654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=141.33 Aligned_cols=116 Identities=32% Similarity=0.466 Sum_probs=99.7
Q ss_pred EEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCCCCeeE
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG 347 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d~~lG 347 (471)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||.|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 67899999999998654 4899999999999999999999754 4679999999999988999999
Q ss_pred EEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 012089 348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (471)
Q Consensus 348 ~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (471)
++.++++++..+.....|++|... ......|+|+++++|.|..
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCC
Confidence 999999999988888888888542 1233579999999999954
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=143.16 Aligned_cols=120 Identities=25% Similarity=0.433 Sum_probs=98.3
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---------CCCeEEEEEE
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF 335 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------~~~~L~v~v~ 335 (471)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 489999999999999999999999999998654 4899999999999999999975432 1257999999
Q ss_pred EcCCCCCCCeeEEEEE-ECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 336 DWDKVGGHDRLGMQLV-PLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|++++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 4444432 345668888753 24579999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-18 Score=143.18 Aligned_cols=111 Identities=27% Similarity=0.344 Sum_probs=97.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEE-eec--CCCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~--~~~~~L~v~v 334 (471)
.+....+.|+|+|++|+||+..+..|.+||||++.+.+.+...++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 466677899999999999999998899999999998776666779999887 999999999998 542 2367899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++.++++++||++.++|+++..+.....|++|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999999998888888888874
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=142.59 Aligned_cols=112 Identities=38% Similarity=0.554 Sum_probs=96.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~v 334 (471)
.+....+.|+|+|++|+||+..|..+.+||||++++.+.....++|++++++.||.|||+|.|.+.. .....|.++|
T Consensus 10 ~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 10 SYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 3556678999999999999999988999999999996544445799999999999999999997532 2346799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++..+++++||++.++++++..+.....|++|.
T Consensus 90 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 99999999999999999999999887888888774
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=139.12 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=81.8
Q ss_pred eEEEEEEEEccccccCccC----CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 012089 264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~----g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~d 338 (471)
|+|.|+|++|++|+..+.. +.+||||+++++... +||+++++++||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997543 48999999999999999999986543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999997653
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=141.49 Aligned_cols=108 Identities=29% Similarity=0.415 Sum_probs=92.0
Q ss_pred eeeccCcccccccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec-CC
Q 012089 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PE 326 (471)
Q Consensus 248 ~i~l~~~~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~ 326 (471)
.-|++++..+......|.|+|+|++|++|+. +..+.+||||++++++. .++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 4577776655568889999999999999984 66789999999999866 4599999999999999999997533 34
Q ss_pred CCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 012089 327 SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 327 ~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~ 359 (471)
.+.|+|+|||++..++|++||++.++|.....+
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 679999999999999999999999999976643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=140.24 Aligned_cols=118 Identities=36% Similarity=0.547 Sum_probs=96.2
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC--C
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H 343 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~--d 343 (471)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999753 34689999999999999999999965 6799999999998765 5
Q ss_pred CeeEEEEEECcccCCCC-ceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
++||++.+++.++.... ....|+++.... + ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLK-K--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCC-C--CCCceEeeEEEEEe
Confidence 79999999999987554 335577664321 1 12456789998876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-18 Score=141.98 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=88.5
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc--cceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~d 338 (471)
..+.|.|+|++|+||+..+ .|.+||||++++.+... ..++|++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999998 78999999999987532 3458999999999999999999986422 357899999999
Q ss_pred CCC-CCCeeEEEEEECcccCCCCceEEEEec
Q 012089 339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 339 ~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
... ++++||++.++|.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 875 478999999999999866655666643
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=141.00 Aligned_cols=110 Identities=30% Similarity=0.338 Sum_probs=94.7
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 556679999999999999999988999999999997543 3457999999999999999999998632 356899999
Q ss_pred EEcCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 335 ~d~d~~--~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
||++.. ++|++||++.++|.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777778776
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=141.23 Aligned_cols=111 Identities=31% Similarity=0.412 Sum_probs=94.1
Q ss_pred cccCCceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccc--cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....|.|+|+|++|+||+..+ ..+.+||||++++.+... ..++|++++++.||.|||+|.|.+... ....|.+
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 8 SYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 35567799999999999999988 778999999999865432 456899999999999999999998643 2568999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
+|||++..+++++||++.++|.++..+.....|++|
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999999999766666677754
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=139.08 Aligned_cols=112 Identities=28% Similarity=0.371 Sum_probs=97.2
Q ss_pred cccCCceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
.++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 45667799999999999999998 678999999999965444456899999999999999999998643 245899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++..+++++||++.++|.++........|++|.
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999888999999999999999888888888873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=135.69 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=87.2
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|.|+|++|++|+..+..+.+||||+++++++ .++|++++++.||.|||.|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 37899999999999988899999999999874 3589999999999999999999998777899999999985 78
Q ss_pred eeEEEEEECcccCCCC--ceEEEEecc
Q 012089 345 RLGMQLVPLKLLTPHE--TKEFTLDLL 369 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~--~~~~~~~l~ 369 (471)
+||++.++|.++..+. ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999987653 456788774
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-17 Score=139.10 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=90.2
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC---CCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~v~ 333 (471)
+....|.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 455678999999999999999988999999999997632 2356899999999999999999986432 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|||++..+++++||++.++|.+... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 234567665
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=138.92 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=98.2
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCccccceeeeeecCCCCCeEeeEEEEEeecCC--------CCeEEEE
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ 333 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~L~v~ 333 (471)
|.|+|....+.+|+..+..+.+||||++++ .+......||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445554444444788887889999999997 334445679999999999999999999996431 4679999
Q ss_pred EEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 334 v~d~d~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
|||++.+ ++|++||++.++|+.+..+.....+++|+.. .....|.|+++++.-.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999986 5799999999999999887766778887642 2456789999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=134.07 Aligned_cols=114 Identities=41% Similarity=0.632 Sum_probs=97.7
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|++|+..+..+.+||||++++.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997632 3689999999999999999999986666889999999998889999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (471)
||++.+++.++..+.....|++|... ++...|.|.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-------g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-------GGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-------CCccCceEEc
Confidence 99999999999988888899888542 3455666643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=136.13 Aligned_cols=115 Identities=32% Similarity=0.511 Sum_probs=94.9
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV---- 340 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~---- 340 (471)
.|+|+|++|++|+..|..|.+||||++++++.. ++|++++++.||.|||+|.|.+..+ ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 4899999999999999999988654 46899999999852
Q ss_pred -------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 341 -------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4689999999999988644 45777776532 2356799999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=141.48 Aligned_cols=106 Identities=37% Similarity=0.552 Sum_probs=90.6
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc--------------------------cceeeeeecCCCC
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN 311 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~--------------------------~~~kT~v~~~t~n 311 (471)
....+.+.|+|+|++|+||...|..|.+||||++.+.+... ..++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 46778999999999999999999999999999999964321 2368999999999
Q ss_pred CeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 312 P~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|.|||+|.|.+..+..+.|.|+|||++ |++||++.++++++.. .....|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 8899999999999983 345666654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-17 Score=138.02 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=95.8
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~ 339 (471)
.|+|+|++|++|+..+..+.+||||++++++. ..++|++.. ++.||.|||.|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS--HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC--cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 48999999999999988899999999999872 234788764 6899999999999997663 5789999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEE
Q 012089 340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV 388 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (471)
.++|++||++.++|.++..+.. ...|++|... +++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999986543 3577777542 3778899874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-17 Score=141.74 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=90.6
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
.+....+.|+|+|++|+||+..|..|.+||||++++.++. ..+++|+++++++||+|||+|.|.+.. .....|.|+
T Consensus 9 ~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 9 SYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred EEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3555678999999999999999988999999999996543 335689999999999999999999864 346789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||+|..+++++||++.++... .+...+.|.++..
T Consensus 89 V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 9999999999999999997664 3344445555443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-17 Score=166.34 Aligned_cols=169 Identities=24% Similarity=0.294 Sum_probs=136.3
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
..|.|+|.+|+||++.+..|.+||||.|.++.+.. .||.++.+++.|.|.|.|+|.+... -+.|.|-|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 45899999999999999999999999999997654 5899999999999999999999754 368999999999 9999
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcc
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE 423 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
+.||.+.+.-++|....+.+-|+.|.. .++ +...+|+|++++.+.+...+
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~------------------------- 130 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS------------------------- 130 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-------------------------
Confidence 999999999999987777888888754 333 36789999999999873211
Q ss_pred ccCcceEEEEEEeeeecC-CC-CCCCCcEEEEEEcCeee----eeC---CCCCCcCC
Q 012089 424 ALSGAGLLSVLVQGAEDV-EG-ENHNNPYAIILYKGDKK----RTK---KNSRPCLE 471 (471)
Q Consensus 424 ~~~~~g~L~V~v~~Ak~L-~~-~~~~dpyv~v~~~~~~~----kTk---~t~nP~Wn 471 (471)
.-+...+.+++++ |. .+.+||||+++..+..+ +|+ +|.||.||
T Consensus 131 -----~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~ 182 (800)
T KOG2059|consen 131 -----SGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD 182 (800)
T ss_pred -----CcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence 1122223344444 43 46799999999876554 676 99999996
|
|
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-17 Score=134.79 Aligned_cols=101 Identities=30% Similarity=0.410 Sum_probs=86.4
Q ss_pred EEEEEEEccccccCcc-CCCCCcEEEEEEcCccccceeeeeecCCCCCeE-eeEEEEEeecC--CCCeEEEEEEEcCCCC
Q 012089 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG 341 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~-~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~--~~~~L~v~v~d~d~~~ 341 (471)
|+|+|++|++|+.++. .|.+||||++++++. .++|+++++++||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999999884 688999999999863 458999999999999 99999998753 2468999999999999
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecc
Q 012089 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLL 369 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~---~~~~~~~~~l~ 369 (471)
+|++||++.+++.++.. ......|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999986 23455677664
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-17 Score=143.21 Aligned_cols=110 Identities=34% Similarity=0.326 Sum_probs=93.1
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~ 333 (471)
...+.|.|+|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+
T Consensus 22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 34468999999999999999998899999999998643 2345799999999999999999998532 234579999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|||++.+++|++||++.+++.++........|+++
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 99999999999999999999999876666777765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=136.93 Aligned_cols=104 Identities=36% Similarity=0.555 Sum_probs=90.2
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~---~~~~L~v~v~d~d~ 339 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999997654 3777776 489999999999999876 25789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
.++|++||++.+++.++..+.....|+.+.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999987766677777644
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=136.81 Aligned_cols=120 Identities=29% Similarity=0.420 Sum_probs=95.5
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
+|+|+|++|++|+..|..|.+||||++++++... ..+|+++++++||.|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4789999999999999999999999999987653 347888889999999999999987766789999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+||++.++|++..-. .++.+..+.. .....|.++.+-++.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGLPP--------TYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccCCC--------cccccCceecCcccCc
Confidence 999999999876542 2222322211 1335677777766655
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-16 Score=132.99 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=95.3
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccc----------cceeeeeecCCCCCeE-eeEEEEEeecCCCCeEEEE
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ 333 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~----------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~v~ 333 (471)
+..|++++|+||+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 67789999999999975442 2579999999999999 999999985 35689999
Q ss_pred EEEcCCCCC---CCeeEEEEEECcccCCCC---ceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 334 v~d~d~~~~---d~~lG~~~i~L~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
|||++..++ +++||++.+++.++..+. ....++++.++. .....+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 799999999999997553 355777776543 2467889998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-17 Score=139.46 Aligned_cols=111 Identities=25% Similarity=0.322 Sum_probs=90.9
Q ss_pred cccCCceEEEEEEEEccccccCcc--CCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQ 331 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~--~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~ 331 (471)
.+....|.|.|+|++|+||+..|. .+.+||||++++.++ +..++||+++++++||+|||+|.|.+... ....|.
T Consensus 9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~ 88 (138)
T cd08407 9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE 88 (138)
T ss_pred EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence 355567899999999999999883 355999999999875 33467899999999999999999998742 356899
Q ss_pred EEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 332 v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|+|||+|.++++++||++.+++.. .+.+.+.|.++..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999999999999999999975 3444556655543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=137.45 Aligned_cols=93 Identities=45% Similarity=0.708 Sum_probs=84.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
.|.|+|+|++|++|+..+. +.+||||+++++++. ++|++++++.||.|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 4899999999999998887 899999999998654 4899999999999999999999876 6789999999999999
Q ss_pred CCeeEEEEEECcccCCCC
Q 012089 343 HDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~~ 360 (471)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-17 Score=138.96 Aligned_cols=111 Identities=34% Similarity=0.402 Sum_probs=92.1
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|.|+|++|+||+..|..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+... ....|.|+
T Consensus 7 ~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 7 MYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred EEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 3556679999999999999999988999999999997542 3456899999999999999999998643 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||++..++|++||++.+++... ++....|+++..
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 99999988999999999999863 334456666544
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=131.35 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=81.7
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
+.|.|+|++|++|+..+ ..||||++.+++++ .+|++.++ .||.|||.|.|.+.+.. ..|.++|||++.+ .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CC
Confidence 68999999999997654 56999999998754 37888777 49999999999997754 4599999999854 99
Q ss_pred CeeEEEEEECcccCCCCce--EEEEecccc
Q 012089 344 DRLGMQLVPLKLLTPHETK--EFTLDLLKH 371 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~--~~~~~l~~~ 371 (471)
|+||++.++|+++..+... ..|++|...
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999998865443 577777643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=135.33 Aligned_cols=101 Identities=35% Similarity=0.511 Sum_probs=87.5
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecC----CCCeE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L 330 (471)
+....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|+||.|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 445568899999999999999888999999999997543 3457999999999999999999998752 25689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 012089 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 331 ~v~v~d~d~~~~d~~lG~~~i~L~~l~~~ 359 (471)
.++|||++..++|++||++.++|+++..-
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999998743
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=164.40 Aligned_cols=130 Identities=28% Similarity=0.456 Sum_probs=109.2
Q ss_pred CceEEEEEEEEccccccCcc------------------------------------------CCCCCcEEEEEEcCcccc
Q 012089 262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP 299 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~------------------------------------------~g~~DPyv~v~l~~~~~~ 299 (471)
-.|.|.++|.+|++|+.+|. .+++||||+|.+++++
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r-- 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT-- 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence 35889999999998875321 2467999999997654
Q ss_pred ceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCC
Q 012089 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379 (471)
Q Consensus 300 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~ 379 (471)
..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+||+++..+...+.|+++..... +.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 348999999999999999999998764 58999999999986 5899999999999999999999999977543 23
Q ss_pred CccceEEEEEEEEEeccCCc
Q 012089 380 MKQRGKIVVELTYVPFKEDS 399 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~ 399 (471)
.+..|+|++++.|.|+.++.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 56678999999999998765
|
|
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=132.30 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=89.8
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999997542 35889999999999999999988764 47899999999999999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccc
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
++||++.+++.++..+ ..+.|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 4566666543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=136.33 Aligned_cols=93 Identities=35% Similarity=0.612 Sum_probs=81.4
Q ss_pred EEEEEEEEccccccCccCC--------------CCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-CCe
Q 012089 265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQI 329 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g--------------~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~ 329 (471)
.|+|+|++|++|+.+|..+ .+||||++.+++.+. +|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~---kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee---ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 689999999997654 8999999999999999999976443 568
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 012089 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 330 L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
|.|+|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=134.06 Aligned_cols=110 Identities=30% Similarity=0.403 Sum_probs=90.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
.+....|.|+|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+
T Consensus 9 ~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 9 CYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 35567799999999999999999889999999999853 23345689999999999999999999763 235689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++.+++|++||++.+++.+. +...+.|.++.
T Consensus 89 v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 89 VMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EEECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 99999999999999999999876 33344555544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=131.15 Aligned_cols=100 Identities=31% Similarity=0.442 Sum_probs=87.2
Q ss_pred EEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC----CC
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG 341 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~----~~ 341 (471)
.++|++|+..+..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999989999999999998754 224699999999999999999998765556789999999997 78
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 342 GHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
+|++||++.+++.++..+.....+++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999999887777888773
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-16 Score=133.61 Aligned_cols=106 Identities=30% Similarity=0.399 Sum_probs=91.3
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCc-cccceeeeeecCCCCCeEeeEEEEEeecC---------------CCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI 329 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~ 329 (471)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 22346899999999999999999998765 4568
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccc
Q 012089 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372 (471)
Q Consensus 330 L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~ 372 (471)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998776778888887653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=137.59 Aligned_cols=109 Identities=31% Similarity=0.395 Sum_probs=89.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
+....+.|.|+|++|+||+..|..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 445678999999999999999989999999999996432 3356899999999999999999998642 345799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++.++++++||++.+++.. .+.....|.++.
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred EECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 999999999999999999988 333445566553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-16 Score=134.12 Aligned_cols=111 Identities=22% Similarity=0.320 Sum_probs=91.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc---ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v 332 (471)
.+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4667789999999999999999988999999999997532 235689999999999999999999874 34679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
+|||++.++++++||++.+++.....+ ..+.|..+.
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999999999999999988754432 234555543
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=130.16 Aligned_cols=109 Identities=37% Similarity=0.499 Sum_probs=92.2
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v 332 (471)
.++...+.|+|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.... .....+.+
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~ 88 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRL 88 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEE
Confidence 355667899999999999999888899999999998543 2345799999999999999999996332 22568999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 367 (471)
+|||++.. .+++||++.++|+++..++.+++++.
T Consensus 89 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 89 LVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999988 88999999999999999888888765
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-16 Score=133.36 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=88.0
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCC-CCeEeeEEEEEeecCC-CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~-nP~wne~f~f~v~~~~-~~~L~v~v 334 (471)
+....|.|+|+|++|+||++.+..+.+||||++++.. .+..++||+++++|+ ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 5566799999999999999876567789999999854 344567999999996 6999999999997533 45788999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++..+++++||++.++.++.. +...+.|.++.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 99999899999999999997643 22345665553
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=128.07 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=93.8
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
-.|+|+|++|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555789999999999865 34689999999999999999999863 57899999999999899
Q ss_pred CeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
++||++.++|.++..+.. ...++++....+ .+.+..|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999875432 234666653211 1357789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=127.30 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=85.5
Q ss_pred cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC-
Q 012089 281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH- 359 (471)
Q Consensus 281 ~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~- 359 (471)
.+|.+||||+++++++. .++|++++++.||.|||+|.|.+.+.....|.|+|||++.. +|++||++.++|.++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998653 35889999999999999999999876677899999999988 899999999999998543
Q ss_pred CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.....|++|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~----------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG----------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC----------CCCCEEEEEEEEec
Confidence 33467887742 35799999999998
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-16 Score=135.74 Aligned_cols=110 Identities=35% Similarity=0.493 Sum_probs=89.4
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|+|+|++|++|++.|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 8 ~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 8 CYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred EEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 355677999999999999999999999999999998543 33456899999999999999999988532 23569999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++..+++++||++.+++... +.....|.++.
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred EEECCCCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence 99999999999999999998733 33344555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=127.09 Aligned_cols=98 Identities=28% Similarity=0.353 Sum_probs=83.1
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~ 339 (471)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35899999999998 4789999999999764 48999999999999999999986432 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCc---eEEEEec
Q 012089 340 VGGHDRLGMQLVPLKLLTPHET---KEFTLDL 368 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~---~~~~~~l 368 (471)
+++|++||++.++|+++..+.. ...|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 8899999999999999976533 3456665
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-16 Score=134.39 Aligned_cols=110 Identities=35% Similarity=0.492 Sum_probs=89.9
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|+++++++||.|||+|.|.+... ....|.|+
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 46667899999999999999999899999999999964 233456899999999999999999998633 23479999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++.+++|++||++.+++... +.....|.++.
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~ 122 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML 122 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence 99999999999999999999764 33334455543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=131.47 Aligned_cols=111 Identities=26% Similarity=0.400 Sum_probs=86.9
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|+|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+... ....|.|+
T Consensus 8 ~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 8 NYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred EECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 355567999999999999999998899999999998442 23456899999999999999999998532 24479999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++..+++++||++.+.......+ ....|..+.
T Consensus 88 V~d~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 99999999999999998765333322 234454443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-16 Score=135.26 Aligned_cols=112 Identities=27% Similarity=0.288 Sum_probs=92.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
.+....+.|.|+|++|+||+..+ .+.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+
T Consensus 9 ~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 9 TYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred EECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 35556789999999999999988 788999999998754 2245689999999999999999999863 335689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||++..+++++||++.++......+...+.|.++..
T Consensus 88 V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999999999999999999776665655666666544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-15 Score=126.89 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=100.1
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|.|.|..... ...+.|.||..+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 4577999999999999865 8999999998654 5899999999999999999975433 467999998765322
Q ss_pred ----CCCeeEEEEEECcccCCCCceEEEEecccccCCCC---CCCCccceEEEEEEEEEec
Q 012089 342 ----GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 342 ----~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~y~p~ 395 (471)
++++||.+.||+.++..+...+.|+++.......+ ....+..++|+++++|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 57899999999999999888899999876422110 0012456899999999984
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-15 Score=121.40 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=75.5
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc------
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------ 337 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~------ 337 (471)
|+|+|++|+||+ +.+||||++++++.. ...++|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 568999999997642 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCeeEEEEEECc--ccCCCCceEEEEe
Q 012089 338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLD 367 (471)
Q Consensus 338 -d~~~~d~~lG~~~i~L~--~l~~~~~~~~~~~ 367 (471)
|..+.|+++|++.+.|. .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988887774 4444444444443
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=122.21 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=87.9
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCCCCCC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH 343 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v~d~d~~~~d 343 (471)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358888888 99999999999987543 34678888888766566
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
..+|.+. +..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566678898886531 124678999999986
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-15 Score=126.80 Aligned_cols=106 Identities=35% Similarity=0.501 Sum_probs=91.4
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC-CCCeEEEEEEEcCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV 340 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~v~v~d~d~~ 340 (471)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22356899999999999999999998754 256899999999988
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
+++++||++.++|.++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999855 6678888754
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=122.46 Aligned_cols=119 Identities=30% Similarity=0.414 Sum_probs=94.4
Q ss_pred EEEEEEEEccccccCc--cCCCCCcEEEEEEcCcc---ccceeeeeecCCC-CCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 012089 265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD 338 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d--~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~L~v~v~d~d 338 (471)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57899999999996432 2456898877765 9999999999998766668999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
.. ++++||++.++++++..+. .+++|... .......|.|.+.++.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34555432 1113557899988865
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=131.00 Aligned_cols=110 Identities=35% Similarity=0.403 Sum_probs=92.6
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v 334 (471)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 445568999999999999998888999999999997642 33568999999999999999999987543 57899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
||++..+++++||++.+++++ .+.....|+++..
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 999988899999999999999 4445667777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=121.84 Aligned_cols=96 Identities=32% Similarity=0.539 Sum_probs=80.0
Q ss_pred EEEEccccccCccCCCCCcEEEEEEcCcc---ccceeeeeecCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCCCC
Q 012089 269 KVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVG 341 (471)
Q Consensus 269 ~v~~a~~L~~~d~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~~~ 341 (471)
-.++|++|+..|..|.+||||++++.++. ...++|+++++++||+|| +|.|.+.... .+.|.++|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 35699999999999999999999987642 335799999999999999 6888764322 578999999999999
Q ss_pred CCCeeEEEEEECcccCCCCceEEE
Q 012089 342 GHDRLGMQLVPLKLLTPHETKEFT 365 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~~~ 365 (471)
+|++||++.++++++......++.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCCceEE
Confidence 999999999999999866555443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-16 Score=148.96 Aligned_cols=109 Identities=32% Similarity=0.481 Sum_probs=92.8
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC-CCCeEEEEEEEc
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW 337 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~v~v~d~ 337 (471)
.....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.++||+|||+|.|.+... ....|.++|||+
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3456789999999999999999999999999997653 3356899999999999999999998743 367899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|+-+++||+|..++.+++|.... ..-|+.|+.
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKlLs 288 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKLLS 288 (683)
T ss_pred cccccccccceecccHHHHhhcc-hhhHHHHhh
Confidence 99999999999999999998663 445666543
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-14 Score=110.10 Aligned_cols=85 Identities=36% Similarity=0.603 Sum_probs=76.6
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|+||+..+..+.+||||++++.+.....++|+++.++.+|.|||+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998755445799999999999999999999887777779999999999988999
Q ss_pred eEEEE
Q 012089 346 LGMQL 350 (471)
Q Consensus 346 lG~~~ 350 (471)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-14 Score=161.57 Aligned_cols=123 Identities=21% Similarity=0.371 Sum_probs=104.7
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEc
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDW 337 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~ 337 (471)
+..-.|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||.|.|.+.++. ++.++++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 4556899999999999998 4468999999999996532 38999999999999999999998765 46799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceE---EEEEEEEEe
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP 394 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~y~p 394 (471)
|.+++| .+|.+.+++.++..+.....|++|.. +++..|+ |++++.|.+
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 988554 89999999999998888888888854 2455677 999998864
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=108.90 Aligned_cols=95 Identities=33% Similarity=0.348 Sum_probs=80.4
Q ss_pred EEEEEEEccccccCc--cCC--CCCcEEEEEEcCccccceeeeeecCCCC--CeEeeEEEEEeecC--------------
Q 012089 266 LHVKVVRASKLLKKD--FLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP-------------- 325 (471)
Q Consensus 266 L~V~v~~a~~L~~~d--~~g--~~DPyv~v~l~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~~~-------------- 325 (471)
|+|.|.+|++++..+ ..| .+||||+..+.+.....++|.++.+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966433 356 4999999999986555679999999999 99999999987641
Q ss_pred ---------CCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 012089 326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 326 ---------~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
....|.++|||+|.+++|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 14689999999999999999999999999887653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=132.03 Aligned_cols=127 Identities=27% Similarity=0.397 Sum_probs=103.7
Q ss_pred cCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
..-...++++|++|.+|..+|..|++||||...++..+. +|+++...+||+|||.|.|..++. +..+++.|||.|.
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkr---rtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~ 366 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKR---RTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDN 366 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccch---hhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcc
Confidence 345678999999999999999999999999999986554 899999999999999999999875 5789999999874
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccC
Q 012089 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (471)
Q Consensus 340 ~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (471)
. ..|||+|+..|.++.+..+ .+.|+.|.++.+. ...+|.|++.++.--..+
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdk-----savsgairlhisveikge 428 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDK-----SAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccch-----hhccceEEEEEEEEEcCc
Confidence 3 3589999999999988754 5567777665442 567898888777654433
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-13 Score=126.30 Aligned_cols=181 Identities=29% Similarity=0.397 Sum_probs=135.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEE--eecC-CCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV--VKEP-ESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~--v~~~-~~~~L~v~ 333 (471)
+......+..++..|++|++++.++..|||++..+++. +..+.+|++..+++||.|||+-... ..+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 45566788999999999999999999999999999764 3334578888999999999765443 3322 24578899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccC--CCCCCCCccceEEEEEEEEEeccCCccccccccccccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN--ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSR 411 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~ 411 (471)
|.|.+.+..++++|+..+++..+.+.+.+.+..-|...+. ..+....+.+|++.+++.|-.
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s----------------- 230 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS----------------- 230 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence 9999999999999999999999988765443332222222 122222467899999998743
Q ss_pred CCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeee-----eeC---CCCCCcCC
Q 012089 412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK-----RTK---KNSRPCLE 471 (471)
Q Consensus 412 ~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~-----kTk---~t~nP~Wn 471 (471)
...-+.|++.++..|.. ++.+||||+.++..+.. ||+ +|.||++|
T Consensus 231 ---------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd 286 (362)
T KOG1013|consen 231 ---------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFD 286 (362)
T ss_pred ---------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccc
Confidence 34567788888888875 57899999999864432 554 89999986
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=99.72 Aligned_cols=96 Identities=45% Similarity=0.658 Sum_probs=82.2
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|.|+|++|++|......+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998776578899999999865323458999999999999999999998765789999999999877789
Q ss_pred eeEEEEEECcccCCCC
Q 012089 345 RLGMQLVPLKLLTPHE 360 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~ 360 (471)
++|.+.+++.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999999987664
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=133.44 Aligned_cols=129 Identities=30% Similarity=0.420 Sum_probs=108.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d 338 (471)
+-.+.|.|+|.+..|.||+..|.+|.+||||++.+.+++ .++|+++++|+||+|||.|...+.+-....+.+.|+|+|
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~--vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKS--VYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEeccee--cccccchhccCCCCccccceEeeeccccceEEEEEeecc
Confidence 455789999999999999999999999999999999765 469999999999999999999998766789999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
...+++.||.+.++|..+..+.......++... ......|.++....+-+.
T Consensus 1113 ~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk------~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1113 SGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK------TFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred cCCCccccccccccHhhcCcCCccceeeeccCc------ceEecccEeecceecchh
Confidence 999999999999999999988777766665321 012456677776666553
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-11 Score=96.27 Aligned_cols=99 Identities=44% Similarity=0.635 Sum_probs=82.4
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|.|+|++|++|......+.++|||.+.+.+ ...++|+++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 478999999998866667899999999987 223588999999999999999999986456789999999998877899
Q ss_pred eEEEEEECcccC-CCCceEEEE
Q 012089 346 LGMQLVPLKLLT-PHETKEFTL 366 (471)
Q Consensus 346 lG~~~i~L~~l~-~~~~~~~~~ 366 (471)
+|.+.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999987 444444444
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-11 Score=123.41 Aligned_cols=97 Identities=39% Similarity=0.535 Sum_probs=84.8
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v 334 (471)
+..+.|.|+|.|++|++|+.++..+.+||||++++... +..+++|.++++++||.|||+|.|.+.. ...-.+.++|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 56678999999999999999999999999999998654 3456799999999999999999998873 3355799999
Q ss_pred EEcCCCCCCCeeEEEEEECcc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKL 355 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~ 355 (471)
||+|.++++++||++.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999998887665
|
|
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=92.93 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=73.8
Q ss_pred HHHHHHHhh-hHH-HHHHHHHHHHHHHHHhh-ccCCceeeeEEEeEeeCCCCCCEEeEEEEEeC-CCCeEEEEeeeeEec
Q 012089 78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDE-YSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG 153 (471)
Q Consensus 78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~vr~~~~-~~~~~~le~~~~~~~ 153 (471)
|.+++|++- +++ +++.+.+++.++..|++ .+|+| +++|++++++||+.+|.|+++|+.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 677888765 333 68899999999999998 47999 99999999999999999999999875 445699999999999
Q ss_pred CCcEEEEEEE
Q 012089 154 NPNIVLVLKL 163 (471)
Q Consensus 154 ~~~i~l~~~~ 163 (471)
+..+++++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999998875
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=116.31 Aligned_cols=98 Identities=27% Similarity=0.448 Sum_probs=82.4
Q ss_pred ceEEEEEEEEcccccc-----CccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 012089 263 VGILHVKVVRASKLLK-----KDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~-----~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~ 335 (471)
...|+|+|++|++++. .+.....||||+|.+.+-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 1223567999999997532 23457888889999999999999999888888999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
|+|..+.|+++|++.+|+..+..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999885
|
|
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=95.93 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=48.8
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEcC----ee
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG----DK 459 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~----~~ 459 (471)
|+|+++++|.| ..+.|+|+|++|+||+..+.+||||++++.. .+
T Consensus 1 ~~l~fsL~Y~~--------------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k 48 (118)
T cd08677 1 PKLHYSLSYDK--------------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKE 48 (118)
T ss_pred CeEEEEEEEcC--------------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccE
Confidence 68999999988 5789999999999999777899999999964 23
Q ss_pred eeeC---CCCCCcCC
Q 012089 460 KRTK---KNSRPCLE 471 (471)
Q Consensus 460 ~kTk---~t~nP~Wn 471 (471)
+||+ +|+||+||
T Consensus 49 ~kT~v~rktlnPvfn 63 (118)
T cd08677 49 AQTALKKLALHTQWE 63 (118)
T ss_pred EEcceecCCCCCccc
Confidence 3676 99999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-10 Score=118.36 Aligned_cols=129 Identities=22% Similarity=0.375 Sum_probs=104.1
Q ss_pred ceEEEEEEEEccccccCc------------------cCCCCCcEEEEEEcCccccceeeeeecCC-CCCeEeeEEEEEee
Q 012089 263 VGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVK 323 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d------------------~~g~~DPyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~ 323 (471)
.|.|.|+|.+|++|+..+ ..+.+||||.+.+++.+. .||+++.+. .||.|||+|.+++.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 599999999999998631 125689999999997665 599999875 69999999999997
Q ss_pred cCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCc
Q 012089 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (471)
Q Consensus 324 ~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~ 399 (471)
-.. ..+.|.|.|.|.++. .+||.+.+|..++..+...+.|+++..... +..+..-.|++++.|.|...++
T Consensus 85 h~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~----~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDK----NPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred cCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCC----CcCCCCCEEEEEEEEEEcccCc
Confidence 654 689999999997755 599999999999999988889998865321 1123335999999999987764
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=114.68 Aligned_cols=104 Identities=28% Similarity=0.390 Sum_probs=84.3
Q ss_pred ceEEEEEEEEccccccC------ccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 012089 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~------d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v 334 (471)
...|.|+|++|.+++.. +.....||||++.+-+-. ..+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 112345999999986531 2346899999999999999999999988777899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||+|..+.|+++|++.+|+..|..+-. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988899999999999999998853 55654
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.4e-11 Score=121.13 Aligned_cols=133 Identities=29% Similarity=0.521 Sum_probs=105.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc-------------------------ccc---ceeeeeecCCC
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-------------------------KLP---WKKTTVKKKNL 310 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~-------------------------~~~---~~kT~v~~~t~ 310 (471)
.+.|.-.+.|.+.+|+||.++|.+|-||||+...+.+. ..+ .+-|+++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 34455567788899999999999999999999877321 000 23588999999
Q ss_pred CCeEeeEEEEEeecCCCCeEEEEEEEcCCC---------------------------------C---CCCeeEEEEEECc
Q 012089 311 NPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPLK 354 (471)
Q Consensus 311 nP~wne~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~---~d~~lG~~~i~L~ 354 (471)
||.|+|.|.|.+.+..+..+.+.+||+|.- + .|||+|++.+||.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999999998889999999998743 2 2799999999999
Q ss_pred ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccC
Q 012089 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (471)
Q Consensus 355 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (471)
++... +.+.|+.|.++.+ +.+.+|++++.+...-..+
T Consensus 269 EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeecc
Confidence 99866 4667777766533 4688999999997765433
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-09 Score=109.90 Aligned_cols=99 Identities=24% Similarity=0.361 Sum_probs=82.1
Q ss_pred ceEEEEEEEEcccccc--C----ccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 012089 263 VGILHVKVVRASKLLK--K----DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~--~----d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v 334 (471)
..+|.|+|+.+.+++. . +.....||||+|.+-+-. ...++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998742 1 222357999999996522 2345888989999999999999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~ 361 (471)
+|+|...+|+++|+..+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998853
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=110.15 Aligned_cols=121 Identities=26% Similarity=0.462 Sum_probs=92.2
Q ss_pred EEEEEEEEccccccCc----cCCCCCcEEEEEEcCcc--ccceeee-eecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGEK--LPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d----~~g~~DPyv~v~l~~~~--~~~~kT~-v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
+|.|+|+++.++.... ....+||||.+++-+-+ ....+|+ +..++.||.|+|+|+|.+..|+-.-++|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999775432 22457999999986532 2245788 667899999999999999999888999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
|..++|||+|+..+|+.+|..+-.+. +|... ....-..-+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhV---pL~~~-----~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHV---PLLSR-----EGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeee---eecCC-----CCccccceeEEEEEEEe
Confidence 99999999999999999999885433 33221 11123445677777664
|
|
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=93.66 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=48.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~-----~~~dpyv~v~~~~ 457 (471)
.|+|.++|+|.| .+++|.|+|++|+||... +.+||||++++..
T Consensus 1 ~Gel~~sL~Y~~--------------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 1 TGEVLLSISYLP--------------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCEEEEEEEEeC--------------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 499999999998 578999999999999863 3489999999875
Q ss_pred ee-----eeeC---CCCCCcCC
Q 012089 458 DK-----KRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~~-----~kTk---~t~nP~Wn 471 (471)
+. +||+ ++.||+||
T Consensus 49 ~~~k~~kkkT~v~k~t~nPvfN 70 (138)
T cd08407 49 QNAKLKKKQTKRAKHKINPVWN 70 (138)
T ss_pred CCcccceeccceeeCCCCCccc
Confidence 42 2666 89999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-09 Score=93.34 Aligned_cols=57 Identities=28% Similarity=0.535 Sum_probs=48.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
.|+|.++++|.| ..+.|.|+|++|+||+. .+.+||||++++..+
T Consensus 1 ~G~i~~sL~Y~~--------------------------------~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~ 48 (136)
T cd08406 1 VGEILLSLSYLP--------------------------------TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDG 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCC
Confidence 399999999988 46799999999999986 468999999998543
Q ss_pred ----eeeeC---CCCCCcCC
Q 012089 459 ----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ----~~kTk---~t~nP~Wn 471 (471)
++||+ +|.||+||
T Consensus 49 ~~~~k~kT~v~k~t~nP~~n 68 (136)
T cd08406 49 RKISKKKTSVKRDDTNPIFN 68 (136)
T ss_pred ccccccCCccccCCCCCeec
Confidence 23665 99999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=106.47 Aligned_cols=99 Identities=24% Similarity=0.366 Sum_probs=81.2
Q ss_pred ceEEEEEEEEccccc----cC--ccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 012089 263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~----~~--d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v 334 (471)
...|+|+|+.+.+++ .. +.....||||+|.+.+-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 122457999999996432 2346899999999999999999999888878999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~ 361 (471)
+|+|..+.|+++|++.+|+..|..+-.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998843
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=106.20 Aligned_cols=123 Identities=22% Similarity=0.328 Sum_probs=93.3
Q ss_pred eEEEEEEEEcccccc---C---ccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeE-eeEEEEEeecCCCCeEEEEE
Q 012089 264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 264 G~L~V~v~~a~~L~~---~---d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~v~v 334 (471)
..|+|+|++|++|+. . +.....||||++.+.+- ....++|++++++.||.| ||+|.|.+..++-.-|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 12234799999998653 223468999888999999 99999999988878999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+|+|..+.|+++|++.+|+..|..+-. ..+|.... ...-...+|.+++.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~-----G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA-----GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC-----CCCCCCeEEEEEEEEcC
Confidence 999988899999999999999987743 23443211 11223467888888866
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-10 Score=115.00 Aligned_cols=100 Identities=29% Similarity=0.442 Sum_probs=87.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecC----CCCeE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L 330 (471)
+..+...|.|.|+.|+++.+-|.+|.|||||+|.+.+.. ....+|+++.+|+||+|+|+|+|.|... +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 556677899999999999999999999999999999864 2457999999999999999999999732 25689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCC
Q 012089 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (471)
Q Consensus 331 ~v~v~d~d~~~~d~~lG~~~i~L~~l~~ 358 (471)
.|+|+|+|-.+.+||-|++.+.|+++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999988753
|
|
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=90.27 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~~~~ 458 (471)
+|+|+++++|.+ ..+.|.|+|++|+||+. .+.+||||++++...
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~ 48 (125)
T cd04029 1 SGEILFSLSYDY--------------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence 599999999986 57899999999999975 368999999999532
Q ss_pred -----eeeeC---CCCCCcCC
Q 012089 459 -----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 -----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~~~kT~v~~~t~nP~wn 69 (125)
T cd04029 49 KSRQSKRKTSIKRNTTNPVYN 69 (125)
T ss_pred CccccceEeeeeeCCCCCccc
Confidence 34776 88999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-09 Score=89.80 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=48.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~ 458 (471)
+|+|++++.|.+ ..+.|.|+|++|+||+. . +.+||||++++...
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~ 48 (125)
T cd08393 1 QGSVQFALDYDP--------------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence 599999999987 46799999999999986 2 57999999999532
Q ss_pred -----eeeeC---CCCCCcCC
Q 012089 459 -----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 -----~~kTk---~t~nP~Wn 471 (471)
++||+ +|.||+||
T Consensus 49 ~~~~~~~kT~v~~~t~nP~~n 69 (125)
T cd08393 49 KSNRGKRKTSVKKKTLNPVFN 69 (125)
T ss_pred CCccccccCccCcCCCCCccC
Confidence 24776 99999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-09 Score=92.63 Aligned_cols=69 Identities=23% Similarity=0.398 Sum_probs=53.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
+|+|.++++|.|...+... .......|.|+|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~ 60 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60 (162)
T ss_pred CceEEEEEEecCccccccc--------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence 5999999999996543221 1122368999999999999986 36899999999842
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
.++||+ +|.||+||
T Consensus 61 ~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 61 SKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CCCcceeCCccCCCCCCCCC
Confidence 334777 89999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.2e-09 Score=82.96 Aligned_cols=86 Identities=19% Similarity=0.338 Sum_probs=71.0
Q ss_pred EEEEEEEccccccCc---cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 266 L~V~v~~a~~L~~~d---~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
|+|+|.+|+++...+ ..+.+||||.+.+++.. +.||+. +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 679999999998877 57889999999999764 246655 589999999999995 46799999999963 45
Q ss_pred CCeeEEEEEECcccCCC
Q 012089 343 HDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~ 359 (471)
.-.+|...+.++++..+
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 56799999999988754
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.6e-09 Score=88.53 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=48.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~ 458 (471)
.|+|.+++.|.+ ..+.|.|.|++|+||+. . +.+||||++++..+
T Consensus 1 ~G~i~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~ 48 (128)
T cd08392 1 TGEIEFALHYNF--------------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD 48 (128)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence 499999999987 46799999999999975 2 68999999998633
Q ss_pred -----eeeeC---CCCCCcCC
Q 012089 459 -----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 -----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~k~kT~v~~~t~nPvfN 69 (128)
T cd08392 49 KSHNSKRKTAVKKGTVNPVFN 69 (128)
T ss_pred CcccceeecccccCCCCCccc
Confidence 34777 89999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=88.73 Aligned_cols=58 Identities=28% Similarity=0.288 Sum_probs=48.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~ 455 (471)
....|+|.+++.|. .|.|.|+|++|+||+. .+.+||||++++
T Consensus 14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L 59 (146)
T cd04028 14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL 59 (146)
T ss_pred CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence 45689999999982 4689999999999975 257999999999
Q ss_pred cCe-----eeeeC---CCCCCcCC
Q 012089 456 KGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 456 ~~~-----~~kTk---~t~nP~Wn 471 (471)
..+ ++||+ +|+||+||
T Consensus 60 lp~~~~~~k~KT~v~kktlnPvfN 83 (146)
T cd04028 60 LEGKKCIAKKKTKIARKTLDPLYQ 83 (146)
T ss_pred ECCCccccceeceecCCCCCCccC
Confidence 543 34776 99999998
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=86.40 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=37.1
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
.+.|.|.|++|+||+. .+.+||||++++.+ .++||+ ++.||+||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wn 65 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFN 65 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcc
Confidence 3689999999999986 46899999999974 234787 99999998
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=86.88 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=48.3
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~ 458 (471)
.|+|.+++.|.+ ..+.|+|+|++|+||+. . +.+||||++++...
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNS--------------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 699999999987 46799999999999986 2 67899999998633
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 50 ~~~~~kT~v~~~t~nP~wn 68 (128)
T cd08388 50 KEHKVKTRVLRKTRNPVYD 68 (128)
T ss_pred cCceeeccEEcCCCCCcee
Confidence 33777 89999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=86.33 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=49.4
Q ss_pred cceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-
Q 012089 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG- 457 (471)
Q Consensus 382 ~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~- 457 (471)
+.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 1 ~~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 1 PLGRIQLTIRYSS--------------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CCeEEEEEEEEeC--------------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 3699999999987 46899999999999986 36899999999863
Q ss_pred ----eeeeeC---CCCCCcCC
Q 012089 458 ----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ----~~~kTk---~t~nP~Wn 471 (471)
.+.||+ ++.||+||
T Consensus 49 ~~~~~~~kT~v~~~~~nP~wn 69 (127)
T cd04030 49 KSKSTRRKTSVKKDNLNPVFD 69 (127)
T ss_pred CCCCceEecccccCCCCCEEC
Confidence 334776 89999998
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=85.52 Aligned_cols=57 Identities=32% Similarity=0.400 Sum_probs=48.8
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~~~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~ 49 (125)
T cd04031 2 TGRIQIQLWYDK--------------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49 (125)
T ss_pred cEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence 599999999987 56899999999999986 35799999999975
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
.++||+ +|.||+||
T Consensus 50 ~~~~~~kT~v~~~t~nP~wn 69 (125)
T cd04031 50 SEKSKRRTKTVKKTLNPEWN 69 (125)
T ss_pred CccccccccccCCCCCCccc
Confidence 234776 89999998
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=87.33 Aligned_cols=57 Identities=26% Similarity=0.403 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC--CCCCCcEEEEEEcCe--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~-- 458 (471)
.|+|+++++|.| ..+.|.|+|++|+||+. .+.+||||++++...
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~ 48 (137)
T cd08409 1 LGDIQISLTYNP--------------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK 48 (137)
T ss_pred CcEEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence 499999999987 46799999999999986 357999999998642
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~kT~v~~~~~nP~fn 67 (137)
T cd08409 49 VVKTKKTEVVDGAASPSFN 67 (137)
T ss_pred EeeeeecccEeCCCCCccc
Confidence 34776 89999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-08 Score=86.51 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=47.0
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-e-
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-D- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-~- 458 (471)
|+|.+++.|.| ..|.|.|+|++|+||+. .+.+||||++++.. .
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~ 48 (135)
T cd08410 1 GELLLSLNYLP--------------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK 48 (135)
T ss_pred CcEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence 89999999987 46899999999999986 36899999999843 2
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ +|.||+||
T Consensus 49 ~~~~~kT~v~~~t~nP~wn 67 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYN 67 (135)
T ss_pred ccceEcCccccCCCCCccc
Confidence 23665 88999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-08 Score=84.43 Aligned_cols=57 Identities=25% Similarity=0.461 Sum_probs=48.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
+|+|++++.|.| ..|.|.|.|++|+||+. .+.+||||++++..
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~ 49 (124)
T cd08387 2 RGELHFSLEYDK--------------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR 49 (124)
T ss_pred CCEEEEEEEECC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence 699999999987 46799999999999986 36899999999942
Q ss_pred -eeeeeC---CCCCCcCC
Q 012089 458 -DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 -~~~kTk---~t~nP~Wn 471 (471)
..+||+ ++.||+||
T Consensus 50 ~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 50 SNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred CCcEeCceEcCCCCCCcc
Confidence 234776 99999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-08 Score=83.32 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=37.1
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
.+.|.|+|++|+||+. .+.+||||++++... ++||+ ++.||+||
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~n 64 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFH 64 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccc
Confidence 5689999999999986 367999999999752 33776 89999998
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-08 Score=84.00 Aligned_cols=57 Identities=28% Similarity=0.382 Sum_probs=48.3
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDF--------------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 699999999986 46799999999999986 357999999998643
Q ss_pred --eeeeC---CCCCCcCC
Q 012089 459 --KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 --~~kTk---~t~nP~Wn 471 (471)
.+||+ ++.||+||
T Consensus 50 ~~~~kT~v~~~t~nP~wn 67 (124)
T cd08385 50 KKKFETKVHRKTLNPVFN 67 (124)
T ss_pred CCceecccCcCCCCCcee
Confidence 23776 89999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-08 Score=101.85 Aligned_cols=126 Identities=25% Similarity=0.393 Sum_probs=96.3
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccc---cceeeeeecCCCCCeEe-eEEEEEeecCCCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~---~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
-.|.|.|+.|++|+... .|.+.|||+|.+-+... ..++|.+..+++||+|| |.|+|.+.+|+-.-|+|.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 56889999999999543 35567999999866432 23466777899999999 999999999998899999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCC
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~ 398 (471)
++...|||++.+|+..+..+-. ..+|.... ...-....|.+.+...|..+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y-----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY-----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc-----hhhhhhhhheeeeEeccccCc
Confidence 9998999999999999987632 22332110 112345677888888886554
|
|
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-08 Score=83.63 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~--- 456 (471)
.|+|++++.|.+ ..+.|.|.|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 49 (125)
T cd08386 2 LGRIQFSVSYDF--------------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK 49 (125)
T ss_pred ccEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence 699999999976 46789999999999986 4679999999994
Q ss_pred CeeeeeC---CCCCCcCC
Q 012089 457 GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~~~~kTk---~t~nP~Wn 471 (471)
+...||+ ++.||+||
T Consensus 50 ~~~~kT~v~~~t~~P~Wn 67 (125)
T cd08386 50 KHKLETKVKRKNLNPHWN 67 (125)
T ss_pred CcceeeeeecCCCCCccc
Confidence 3334776 89999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-08 Score=84.60 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=44.4
Q ss_pred EEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEcCe---
Q 012089 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGD--- 458 (471)
Q Consensus 385 ~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~--- 458 (471)
+|.++|+|.| .+|+|+|+|++|+||+.. +.+|||||+++...
T Consensus 2 el~~sL~Y~p--------------------------------~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~ 49 (135)
T cd08692 2 ELQLGTCFQA--------------------------------VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL 49 (135)
T ss_pred eEEEEeeecC--------------------------------cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc
Confidence 7899999998 688999999999999874 45799999987532
Q ss_pred --eeeeC---CC-CCCcCC
Q 012089 459 --KKRTK---KN-SRPCLE 471 (471)
Q Consensus 459 --~~kTk---~t-~nP~Wn 471 (471)
++||+ +| +||+||
T Consensus 50 ~~KkKT~v~k~t~~~P~fN 68 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWG 68 (135)
T ss_pred ceeecCccEECCCCCceec
Confidence 23665 66 469998
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-08 Score=102.11 Aligned_cols=124 Identities=26% Similarity=0.361 Sum_probs=96.1
Q ss_pred EEEccccccCccCCCCCcEEEEEEcCcc-ccceeeeeecCCCCCeEeeEEEEEeecC---------------CCCeEEEE
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK-LPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQILQLQ 333 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~L~v~ 333 (471)
+.+++++-+.+ ++.+|||+.+...+.. ....+|++++.|.+|.|+|.|.|.+... ..-.++++
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 34445555544 4669999999986543 2346899999999999999999998754 23478999
Q ss_pred EEE-cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 334 VFD-WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 334 v~d-~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+|+ .+....++|+|++.+|+..+........|+.|.+..+.++...+...|.+++.+.|.-
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999 5566679999999999999886666778888877766555556778899999999974
|
|
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.5e-08 Score=82.63 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=37.7
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe------eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD------KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~------~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|++|+||+. ++.+||||++++..+ ++||+ ++.||+||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfn 68 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFN 68 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccc
Confidence 57899999999999986 468999999998532 33676 99999998
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-08 Score=98.15 Aligned_cols=122 Identities=28% Similarity=0.407 Sum_probs=97.6
Q ss_pred eEEEEEEEEccccccCccC-CCCCcEEEEEEcCccccceeeeeecCCCCCeEe-eEEEEEeecC--CCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~--~~~~L~v~v~d~d~ 339 (471)
|.|.|+|..|++|+.+|.. ...|.||.+.+.+... +|.+..+++||.|| +.|.|.+.+. ....|.+.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7899999999999998854 4679999999987654 89999999999999 7899998754 36789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC----------ceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 340 VGGHDRLGMQLVPLKLLTPHE----------TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~----------~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
.+.+|-||.+.|+++.+.-++ ...-|++....+ ...+|+|.+-+..--+
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkvdlf 138 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKVDLF 138 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEEeeh
Confidence 999999999999998775321 134677765543 3467888876654433
|
|
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=6e-08 Score=83.97 Aligned_cols=57 Identities=32% Similarity=0.540 Sum_probs=47.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|.++++|.| ..|.|.|.|++|+||+. .+.+||||++++..
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~ 48 (136)
T cd08402 1 LGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 48 (136)
T ss_pred CcEEEEEeEEcC--------------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence 499999999988 56899999999999986 36799999999953
Q ss_pred e---eeeeC---CCCCCcCC
Q 012089 458 D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~---~~kTk---~t~nP~Wn 471 (471)
+ ++||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~~~t~nP~wn 68 (136)
T cd08402 49 KRLKKKKTTIKKRTLNPYYN 68 (136)
T ss_pred cccceeeccceeCCCCCccc
Confidence 1 23665 89999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.4e-08 Score=83.06 Aligned_cols=57 Identities=26% Similarity=0.444 Sum_probs=47.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++...
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQP--------------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 599999999976 46789999999999986 368999999998532
Q ss_pred ----eeeeC---CCCCCcCC
Q 012089 459 ----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~k~t~nP~w~ 68 (136)
T cd08404 49 KRISKKKTHVKKCTLNPVFN 68 (136)
T ss_pred ceeeeEcCccccCCCCCccC
Confidence 23665 89999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.4e-08 Score=83.40 Aligned_cols=57 Identities=25% Similarity=0.524 Sum_probs=47.8
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~--~ 457 (471)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 ~G~l~~sl~y~~--------------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~ 48 (136)
T cd08405 1 RGELLLSLCYNP--------------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence 599999999987 56899999999999986 4689999999984 2
Q ss_pred e---eeeeC---CCCCCcCC
Q 012089 458 D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~---~~kTk---~t~nP~Wn 471 (471)
. +.||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~~~t~~P~wn 68 (136)
T cd08405 49 KRVEKKKTVIKKRTLNPVFN 68 (136)
T ss_pred CccccccCcceeCCCCCccc
Confidence 2 23676 89999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.7e-08 Score=84.28 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=47.2
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-- 458 (471)
|+|.++++|.+ ..++|.|+|++|+||+. .+.+||||++++...
T Consensus 2 ~ei~~sL~Y~~--------------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~ 49 (138)
T cd08408 2 PELLLGLEYNA--------------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG 49 (138)
T ss_pred CeEEEEeEEcC--------------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC
Confidence 78999999987 57899999999999986 368999999998531
Q ss_pred ----eeeeC---CCCCCcCC
Q 012089 459 ----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 50 ~~~~~~kT~v~~~t~nPvfn 69 (138)
T cd08408 50 QEISKSKTSIRRGQPDPEFK 69 (138)
T ss_pred cceeeccceeecCCCCCcEe
Confidence 23676 88999998
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=82.16 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|.++++|.+ ..+.|.|.|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~ 49 (133)
T cd04009 2 YGVLTVKAYYRA--------------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH 49 (133)
T ss_pred ceEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence 699999999976 45789999999999986 36899999999863
Q ss_pred -----eeeeeC---CCCCCcCC
Q 012089 458 -----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 -----~~~kTk---~t~nP~Wn 471 (471)
..+||+ +|.||+||
T Consensus 50 ~~~~~~~~kT~v~~~t~nP~wn 71 (133)
T cd04009 50 LFPDVPTPKTQVKKKTLFPLFD 71 (133)
T ss_pred cCccccccccccCcCCCCCccC
Confidence 234776 99999998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=80.40 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=46.7
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-- 457 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~~~-- 457 (471)
|+|++++.|.+ ..+.|.|+|.+|+||+. .+.+||||++++.+
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~ 48 (123)
T cd08521 1 GEIEFSLSYNY--------------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDK 48 (123)
T ss_pred CeEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCC
Confidence 89999999976 56799999999999985 35899999999843
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
.++||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~~~t~~P~wn 68 (123)
T cd08521 49 SKQSKRKTSVKKNTTNPVFN 68 (123)
T ss_pred CcCceeeccccCCCCCCccc
Confidence 234676 88999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=80.99 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=47.6
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
.|+|.+++.|.+ .++.|.|+|++|+||+. .+.+||||++.+...
T Consensus 2 ~G~l~~sl~Y~~--------------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDP--------------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 599999999987 56799999999999986 367999999887443
Q ss_pred --eeeeC--CCCCCcCC
Q 012089 459 --KKRTK--KNSRPCLE 471 (471)
Q Consensus 459 --~~kTk--~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 50 ~~~~kTkv~~~~nP~fn 66 (124)
T cd08389 50 KQRAKTKVQRGPNPVFN 66 (124)
T ss_pred cceeecccccCCCCccc
Confidence 33777 55999998
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=81.89 Aligned_cols=56 Identities=25% Similarity=0.535 Sum_probs=47.1
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-- 458 (471)
|+|.+++.|.| .++.|+|+|++|++|+. .+.+||||++++...
T Consensus 1 g~l~~~~~y~~--------------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~ 48 (134)
T cd08403 1 GELMFSLCYLP--------------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR 48 (134)
T ss_pred CeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence 89999999987 57899999999999986 368999999998532
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~kT~v~~~t~nP~wn 67 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYN 67 (134)
T ss_pred ccceecCCcccCCCCCccc
Confidence 23665 88999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-07 Score=97.13 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=91.7
Q ss_pred CceEEEEEEEEccccccC----cc-CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 262 PVGILHVKVVRASKLLKK----DF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~----d~-~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
-.|.|.++|.+|+-+... +. ....||||.+.+++.+. .|| .+..||.|||+|.+.+.-.....+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999843321 11 11239999999997665 466 556699999999999976543579999988
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCc-eEEEEecccccCCCCCCCCccc-eEEEEEEEEEeccCCc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQR-GKIVVELTYVPFKEDS 399 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~y~p~~~~~ 399 (471)
...+||.+.+|..++..+.. .+.|+++..... .... ..|++++.|.|...+.
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG------KPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC------CCCCCCEEEEEEEEEEhhhCc
Confidence 25789999999999998865 788998865321 1123 5999999999987764
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=80.11 Aligned_cols=43 Identities=26% Similarity=0.240 Sum_probs=38.3
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEEcCeeeeeC----CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTK----KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~~~kTk----~t~nP~Wn 471 (471)
|.|.|+|++||+|+. .+.+||||++.+++++.||+ ++.||+||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WN 50 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWN 50 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccC
Confidence 799999999999875 37899999999999888887 47999998
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=77.90 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=37.7
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.|.|+|++|+||+. .+.+||||+++++++.+||+ +|.||+||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wn 48 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWE 48 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCccc
Confidence 37899999999986 36899999999999888887 89999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-07 Score=78.64 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=46.7
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC----CCCCcEEEEEEcC--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG-- 457 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~----~~~dpyv~v~~~~-- 457 (471)
|+|.+++.|.+ .++.|.|.|.+|+||+.. +.+||||++++..
T Consensus 1 G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~ 48 (123)
T cd08390 1 GRLWFSVQYDL--------------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE 48 (123)
T ss_pred CEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence 89999999976 467999999999999863 4789999999853
Q ss_pred -eeeeeC---CCCCCcCC
Q 012089 458 -DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 -~~~kTk---~t~nP~Wn 471 (471)
..+||+ ++.||+||
T Consensus 49 ~~~~~T~v~~~~~~P~wn 66 (123)
T cd08390 49 RRSLQSKVKRKTQNPNFD 66 (123)
T ss_pred CCceEeeeEcCCCCCccc
Confidence 233676 99999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-07 Score=77.96 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=47.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 1 ~G~~~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~ 48 (123)
T cd04035 1 LGTLEFTLLYDP--------------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA 48 (123)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence 489999999987 46789999999999986 35799999999842
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
...||+ ++.||+||
T Consensus 49 ~~~~~~rT~v~~~~~~P~Wn 68 (123)
T cd04035 49 SKATKLRTKTVHKTRNPEFN 68 (123)
T ss_pred CCCCceeeeeecCCCCCCcc
Confidence 234776 89999998
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-07 Score=79.80 Aligned_cols=56 Identities=27% Similarity=0.510 Sum_probs=47.4
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-- 458 (471)
|+|++.++|.+ ..+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~ 48 (134)
T cd00276 1 GELLLSLSYLP--------------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK 48 (134)
T ss_pred CeEEEEEEeeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence 89999999987 46799999999999986 358999999998654
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
.+||+ ++.||+||
T Consensus 49 ~~~~~~T~~~~~~~~P~wn 67 (134)
T cd00276 49 KLKKKKTSVKKGTLNPVFN 67 (134)
T ss_pred EeeeecCcceecCCCCeee
Confidence 23666 88999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-07 Score=77.36 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=37.9
Q ss_pred eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~-------~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|+|.|+|.+|+||+.. +.+||||+++++++..||+ ++.||+||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWn 53 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFN 53 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCccc
Confidence 6899999999999862 2489999999988777888 89999998
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-07 Score=79.57 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=37.6
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|++|+||+. .+.+||||++++.++ ..||+ ++.||+||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn 66 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN 66 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence 57899999999999986 357999999999642 23676 89999998
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.1e-08 Score=103.14 Aligned_cols=92 Identities=28% Similarity=0.390 Sum_probs=82.5
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
...++|.+++|.+|.+.|.+|.+|||+++.+++... ..++..+.+|+||+|++.|++....+....+.++|||+|..+.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 445779999999999999999999999999997654 2367788999999999999999888778899999999999999
Q ss_pred CCeeEEEEEECcc
Q 012089 343 HDRLGMQLVPLKL 355 (471)
Q Consensus 343 d~~lG~~~i~L~~ 355 (471)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999875
|
|
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-07 Score=78.15 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=38.4
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCee-eeeC--CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTK--KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~-~kTk--~t~nP~Wn 471 (471)
..|+|+|++|+||+.++.+||||++++++.+ .||+ ++.||+||
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~~~~nP~Wn 49 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVREGPNPVWS 49 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecCCCCCCccC
Confidence 4799999999999998899999999998755 4787 88999998
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-07 Score=78.68 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=37.1
Q ss_pred EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~---L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.|.|+|++|+| |+. .+.+||||++.+++++.||+ ++.||+||
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~Wn 51 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWN 51 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcce
Confidence 38899999999 654 47899999999999988888 89999998
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-07 Score=76.89 Aligned_cols=43 Identities=33% Similarity=0.446 Sum_probs=39.1
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC--CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK--KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk--~t~nP~Wn 471 (471)
+.|.|.|.+||+|+.++..||||++.+++++.||+ +..||.||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~Wn 46 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPCWE 46 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCcee
Confidence 58999999999999888899999999999877888 66799998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.5e-07 Score=77.92 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=40.3
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|+|+|++|+||+. .+.+||||+++++++..||+ ++.||+||
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWN 75 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWN 75 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCC
Confidence 56899999999999985 46799999999998877888 88999998
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-07 Score=76.78 Aligned_cols=43 Identities=28% Similarity=0.524 Sum_probs=37.5
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---C-CCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---K-NSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~-t~nP~Wn 471 (471)
|.|+|+|++|+||+. .+.+||||++++++.++||+ + +.||+||
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wn 50 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWD 50 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccC
Confidence 689999999999986 36899999999998777776 3 6899998
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-07 Score=76.87 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=33.9
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC----e---eeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG----D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~--~~~dpyv~v~~~~----~---~~kTk---~t~nP~Wn 471 (471)
+|+|+|.+|+||+.. +.+||||++++.+ + ++||+ +|.||+||
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwN 54 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYN 54 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccC
Confidence 489999999999874 6899999999842 2 22565 88899998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-07 Score=75.09 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=38.7
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.-.|+|+|++|+||+ .+.+||||+++++++++||+ ++.||+||
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wn 48 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYN 48 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccc
Confidence 357999999999999 57899999999999888887 78999998
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.2e-07 Score=77.18 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=40.7
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|+|+|++|+||+. .+.+||||+++++++..||+ +|.||.||
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wn 63 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWN 63 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccC
Confidence 56999999999999986 36899999999998888887 89999998
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-07 Score=99.54 Aligned_cols=108 Identities=26% Similarity=0.192 Sum_probs=88.7
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEe---ecCCCCeEEEEEEE
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVV---KEPESQILQLQVFD 336 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v---~~~~~~~L~v~v~d 336 (471)
..|+|.|-|..|++|+--..+..+||||+.++.++ +..++||++.++|.||+|||...+.- .......|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36899999999999976555678999999999875 33467999999999999999887662 12235789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
.+....+.++|.+.++|.++...++...|+.|.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999989999999999999988776666777663
|
|
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.2e-07 Score=74.74 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=36.2
Q ss_pred eEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe---eeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~---~~kTk---~t~nP~Wn 471 (471)
|.|+|+|++|+||+. . +.+||||++++.+. ..||+ +|.||+||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wn 53 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWE 53 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccc
Confidence 689999999999986 3 68999999998543 23776 99999998
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.2e-07 Score=75.56 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=37.5
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.|.|+|++|+||+.. .+||||+++++++.+||+ +|.||+||
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wn 44 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWN 44 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccc
Confidence 388999999999988 899999999998877887 89999998
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.5e-07 Score=74.40 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=37.4
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
+++|+|++|+||+.. +.+||||++++++++.||+ +|.||.||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wn 48 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWL 48 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCcee
Confidence 478999999999873 6899999999998878887 89999997
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-06 Score=73.52 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=36.2
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
+.|+|+|++|+||+. .+.+||||++.+.+ ...||+ ++.||.||
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wn 66 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWN 66 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCcc
Confidence 689999999999985 35799999999964 334776 88999997
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-06 Score=72.40 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=35.9
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeeeeeC---CCCCCcC-C
Q 012089 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTK---KNSRPCL-E 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~----~~~~dpyv~v~~~~~~~kTk---~t~nP~W-n 471 (471)
|.|+|++|+||+. .+.+||||++++++.+.||+ ++.||+| |
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~n 49 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNS 49 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccC
Confidence 5799999999985 35799999999998777887 8899999 5
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=73.57 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=39.7
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.++|+|+|++|+||.. .+.+||||++.++++..||+ ++.||+||
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wn 51 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFD 51 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCccc
Confidence 4689999999999986 36899999999999888888 89999998
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=72.52 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=38.3
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|.|.|+|++|+||+. .+.+||||++++++...||+ ++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~ 49 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWN 49 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccC
Confidence 689999999999986 35799999999998877887 89999997
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-06 Score=73.19 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=38.0
Q ss_pred eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~---------~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|.|.|.|++|+||+.. +.+||||+++++++..||+ ++.||+||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~ 55 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWN 55 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCccc
Confidence 6799999999999852 4799999999998777887 89999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-06 Score=73.47 Aligned_cols=43 Identities=28% Similarity=0.489 Sum_probs=38.4
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~-----~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|.|+|.|++|+||+. .+.+||||++++++++.||+ ++.||+||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wn 51 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWN 51 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccC
Confidence 689999999999975 35799999999988878887 89999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-06 Score=73.14 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=37.1
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
+|+|+|++|+||+.. +.+||||++++++...||+ +|.||+||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wn 48 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWN 48 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccC
Confidence 589999999999863 5799999999998877887 89999998
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-06 Score=82.64 Aligned_cols=95 Identities=34% Similarity=0.394 Sum_probs=79.1
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
++.....-|.|++++|..|..+|.+|.+||||..++.++. .-+++|.+.++|.||.||+.|.|.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4566678899999999999999999999999999997642 335689999999999999999998863 336789999
Q ss_pred EEEcCCCCCCCeeEEEEEE
Q 012089 334 VFDWDKVGGHDRLGMQLVP 352 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~ 352 (471)
|||++.....+++|-+...
T Consensus 307 vgd~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLG 325 (362)
T ss_pred ecccCCCcCccCCCccccc
Confidence 9999987678888875543
|
|
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=98.16 E-value=4e-06 Score=72.12 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=38.1
Q ss_pred cceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~-------------~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
.+|.|+|+|++|+||... +.+||||++.+++++. ||+ +|.||+||
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wn 63 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWN 63 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcc
Confidence 468999999999999752 3689999999998664 665 89999998
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.3e-06 Score=72.13 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=37.7
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
+.|+|+|++|++|+. .+.+||||+++++++..||+ +|.||+||
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wn 49 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWN 49 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccc
Confidence 378999999999986 35799999999988777887 89999998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-06 Score=83.35 Aligned_cols=121 Identities=23% Similarity=0.346 Sum_probs=96.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcC----ccccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~----~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~v~ 335 (471)
...++|.|+.|.+|+-. ..|.-.|||.+.+.+ ++.+++.|+.+.++-.|.+||+|.|.+.+ |+...|.++|.
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 34678888999999864 467889999999854 34455678898999999999999999864 44678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
|+.-.+.|..+|.+.++|+++........|++|..+++. ...|-..+++
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm------DeTGLtiLRI 1251 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM------DETGLTILRI 1251 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccccccc------cccchhHHHH
Confidence 998777788999999999999988888899999776543 3456555554
|
|
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-06 Score=70.86 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=35.6
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
.|+|+|++|+||+. .+.+||||++++++.. .||+ ++.||+||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wn 49 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWD 49 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccc
Confidence 37899999999986 3689999999998743 4776 99999998
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.7e-06 Score=69.95 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=36.9
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|.|+|+|++|+||+. .+.+||||+++++++. .||+ ++.||+||
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wn 50 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWD 50 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccC
Confidence 689999999999987 3689999999998754 3665 89999998
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-06 Score=70.23 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=35.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
|.|+|++|+||+. .+.+||||++.++++.. ||+ ++.||+||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wn 49 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWG 49 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCccc
Confidence 7899999999986 46899999999987653 777 99999998
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.6e-06 Score=70.63 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=34.8
Q ss_pred EEEEEeeeecCCCC----CCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGE----NHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~----~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|.|.|.+|+||+.. +.+||||++.++++. .||+ +|.||+||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~Wn 50 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFG 50 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccC
Confidence 67899999999863 478999999998764 4776 99999998
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.5e-06 Score=70.42 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=34.5
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~---~~~dpyv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
|+|+|++|+||+.. +.+||||++++++ .++||+ +|.||+||
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wn 51 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWN 51 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccc
Confidence 78999999999863 5899999999964 334777 88999998
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.7e-06 Score=70.28 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=37.4
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC----CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK----KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk----~t~nP~Wn 471 (471)
|.|.|+|++|+||+. .+.+||||+++++++.++|+ ++.||+||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wn 50 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWN 50 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCccc
Confidence 689999999999986 35899999999988877776 47899998
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.7e-06 Score=70.10 Aligned_cols=43 Identities=28% Similarity=0.535 Sum_probs=37.0
Q ss_pred eEEEEEEeeeecCCCC----CCCCcEEEEEEcC--eeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKG--DKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~----~~~dpyv~v~~~~--~~~kTk---~t~nP~Wn 471 (471)
|.|.|+|++|+||+.. +.+||||++.+++ ...||+ ++.||.||
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wn 53 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWN 53 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcce
Confidence 7899999999999852 4689999999988 455776 99999997
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.7e-06 Score=68.95 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=35.6
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|.|+|++|+||+..+.+||||++++++++ .||+ + .||+||
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wn 45 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWG 45 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCccc
Confidence 78999999999988889999999998865 4776 7 999998
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.4e-05 Score=80.26 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=92.5
Q ss_pred ceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----CCCCeeEEEEEECcccCCCCceEEEEecccccCCC
Q 012089 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375 (471)
Q Consensus 300 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~----~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~ 375 (471)
..+|.++.+.+||.|-+.|.+.......|.++++++|.+.. ..++|+|++...+..+.........+.+..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~----- 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP----- 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence 34899999999999999999888877789999999998743 457899999999998876543322222211
Q ss_pred CCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEE
Q 012089 376 DPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAI 452 (471)
Q Consensus 376 ~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~ 452 (471)
......|+|.+...-.- .......-..+|++|+.+ +++|||.+
T Consensus 117 --~~~~~~g~iti~aee~~--------------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~ 162 (529)
T KOG1327|consen 117 --GKNAGSGTITISAEEDE--------------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLE 162 (529)
T ss_pred --CccCCcccEEEEeeccc--------------------------------ccCceeeeeeeeeecCcccccccCCcceE
Confidence 12345677777664211 111222334468999874 68999999
Q ss_pred EEEc--Ceee----eeC---CCCCCcCC
Q 012089 453 ILYK--GDKK----RTK---KNSRPCLE 471 (471)
Q Consensus 453 v~~~--~~~~----kTk---~t~nP~Wn 471 (471)
++-. .... +|. +++||.|.
T Consensus 163 ~~~~~~d~s~~~~~~tEv~~n~l~p~w~ 190 (529)
T KOG1327|consen 163 FYKRVDDGSTQMLYRTEVVKNTLNPQWA 190 (529)
T ss_pred EEEecCCCceeeccccceeccCCCCccc
Confidence 9854 2222 665 89999993
|
|
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.4e-06 Score=69.93 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=35.0
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEc-CeeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYK-GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~-~~~~kTk---~t~nP~Wn 471 (471)
|+|+|++|+||+. .+.+||||+++++ .+..||+ ++.||+||
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wn 49 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWN 49 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCccc
Confidence 7899999999986 3579999999997 4445887 89999998
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=68.27 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=35.4
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeee--eeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK--RTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~--kTk---~t~nP~Wn 471 (471)
.|+|.|++|+||+. .+.+||||+++++++.. ||+ +|.||+||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wn 50 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFG 50 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccc
Confidence 37899999999986 36899999999988653 554 89999997
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=69.48 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=27.4
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG 457 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~ 457 (471)
..+.|+|+|++|+||.. .+.+||||++.+..
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~ 59 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVP 59 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcc
Confidence 68999999999999986 46899999999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.6e-05 Score=67.62 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=35.3
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eeeeeC----CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTK----KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-~~~kTk----~t~nP~Wn 471 (471)
|+|+|++|+||+. .+.+||||++++++ +++||+ ++.||+||
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wn 50 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWN 50 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCC
Confidence 7899999999986 36899999999988 666776 47899998
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.3e-05 Score=66.68 Aligned_cols=42 Identities=17% Similarity=0.418 Sum_probs=35.2
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe---eeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~---~~kTk---~t~nP~Wn 471 (471)
.|+|+|.+|+||+. .+.+||||++++++. ..||+ ++.||+||
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wn 52 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWD 52 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCccc
Confidence 68999999999986 368999999998754 23776 89999998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.4e-05 Score=61.68 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=66.0
Q ss_pred EEEEEEccccccCccCC-CCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCCCCC
Q 012089 267 HVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 267 ~V~v~~a~~L~~~d~~g-~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v~d~d~~~~d 343 (471)
-|++++|++|.-....| .+.-|++--+.-.+-...||++++...||+|+|+|.|.+.. ...-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47889999987543222 33446654443223234689999999999999999998763 335678888888 45678
Q ss_pred CeeEEEEEECcccCCC
Q 012089 344 DRLGMQLVPLKLLTPH 359 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~ 359 (471)
+.||.|++.|+++..+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999988755
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.4e-05 Score=83.37 Aligned_cols=93 Identities=18% Similarity=0.329 Sum_probs=76.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEE-EcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLS-LTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~-l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
..+.-.|+..+++++|+ ++. .|+|..+- ++.+. +||.+.++|.||+|||...|.+...+....++.|||
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ecccccCeEEEEeehhh----hcc---CCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEe
Confidence 35667899999999997 332 58876654 45433 599999999999999999999987666678999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
.+++++++++|.|+++|.++...+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHH
Confidence 999999999999999998776553
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.7e-05 Score=78.20 Aligned_cols=88 Identities=31% Similarity=0.525 Sum_probs=71.0
Q ss_pred EEEccccccCccCCCCCcEEEEEEc--C-ccccceeeeeecCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCCCCC
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLT--G-EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVGG 342 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~--~-~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~~~~ 342 (471)
..+|++|.++|..+++|||..++-. . .....++|++.++++||.|.+ |.+...... ...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 2 233457999999999999995 455544322 4678999999999889
Q ss_pred CCeeEEEEEECcccCC
Q 012089 343 HDRLGMQLVPLKLLTP 358 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~ 358 (471)
++++|.+..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999998864
|
|
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.9e-05 Score=64.06 Aligned_cols=41 Identities=29% Similarity=0.501 Sum_probs=34.4
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|+|.|++|+||+. .+.+||||++++++.. .||+ ++.||+||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wn 48 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWN 48 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCccc
Confidence 5789999999986 3579999999997644 4776 89999998
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.1e-05 Score=75.68 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=36.7
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcCee-----eeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDK-----KRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-----~kTk---~t~nP~Wn 471 (471)
...|.|+|.+|+||-. +|.|||||++.+-.+. +||| .|+||+||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wN 233 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWN 233 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcccc
Confidence 4589999999999965 6899999999985433 2666 99999998
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.7e-05 Score=59.86 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=35.5
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
|.|+|++|+||+. .+.+||||++.+++ ...||+ ++.||.||
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~ 50 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWN 50 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceee
Confidence 7899999999997 45899999999987 456777 88999996
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=9.2e-05 Score=61.69 Aligned_cols=93 Identities=28% Similarity=0.390 Sum_probs=67.9
Q ss_pred EEEEEEEccccccCcc-------------CCCCCcEEEEEEc--CccccceeeeeecCCCCCeEeeEEEEEee-------
Q 012089 266 LHVKVVRASKLLKKDF-------------LGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVK------- 323 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~-------------~g~~DPyv~v~l~--~~~~~~~kT~v~~~t~nP~wne~f~f~v~------- 323 (471)
|.|.|++|.||+..-. .-.-++||++.+. ++. ..++|+++.++.-|.|+.+++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4688899999974321 0124799999854 333 3468999999999999999999865
Q ss_pred -c-------CCCCeEEEEEEEcCCC----------CCCCeeEEEEEECcccCCC
Q 012089 324 -E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 324 -~-------~~~~~L~v~v~d~d~~----------~~d~~lG~~~i~L~~l~~~ 359 (471)
+ .+...+.++||+.+.- .+|-.||.+.||+.+|...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1245799999997632 2355799999999998744
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.1e-05 Score=90.24 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=40.9
Q ss_pred cceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~-~~~dpyv~v~~~~~-~~kTk---~t~nP~Wn 471 (471)
-.|.|+|+|++|+||.++ +++||||+++++++ ++||| ++.||+||
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wn 2027 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWK 2027 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcc
Confidence 569999999999999975 89999999999966 66898 99999998
|
|
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=73.90 Aligned_cols=225 Identities=18% Similarity=0.287 Sum_probs=145.6
Q ss_pred CCCCcccCCCC-------cchHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhhc-cCCceeeeEEEeEeeCCCC
Q 012089 61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPY------LDKAICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTL 126 (471)
Q Consensus 61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~------~~~~~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~ 126 (471)
+.|.|+..... -.|--+|.+++....- ...++.+.....++.++... .... ++.+.+.++.+|.+
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg~~ 159 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELGTK 159 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhccc
Confidence 58888866432 2455667777777652 22233333333344444433 3444 89999999999999
Q ss_pred CCEEeEEEEEeCC------------C-------------CeEEEEeeeeEecCCcEEEEEEE-eeeEEEEEEEEEEEEEE
Q 012089 127 PPTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKL-LSFRITVQLVDLQIFAA 180 (471)
Q Consensus 127 ~P~i~~vr~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~-~~~~~~v~v~~l~~~g~ 180 (471)
.|.+++.+++.-+ + ..+.+-+++.|.|+.--++.+.. .+-+..+.|+-.+++|.
T Consensus 160 f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm 239 (1051)
T KOG3532|consen 160 FMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGM 239 (1051)
T ss_pred cccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccc
Confidence 9999999998610 0 12455678899998766666654 22233344446699999
Q ss_pred EEEEEeeCCCCCCceeEEEEEcCCCceEEEEEE--EeCCCccccchhhHHHHHHHHHhhhcccccCCcee-------eec
Q 012089 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIK--ILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYE-------IPI 251 (471)
Q Consensus 181 ~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~--~~g~~i~~~P~l~~~i~~~i~~~l~~~~v~P~~~~-------i~l 251 (471)
+|+.+. ..|+ ..++++|+..|.+..+.+ -.|-.+-+ -+.+.|++.|+..+.....|||+-- .|+
T Consensus 240 ~r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~ 312 (1051)
T KOG3532|consen 240 VRVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI 312 (1051)
T ss_pred eeEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence 999986 3444 889999999998755444 23222211 2346677888888888899998521 122
Q ss_pred cCccc----ccccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC
Q 012089 252 LDASS----VAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG 295 (471)
Q Consensus 252 ~~~~~----~~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~ 295 (471)
-.... ..--.+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 313 FQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred cccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 11111 0123468999999999988864 457888999998854
|
|
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.4e-05 Score=62.95 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=34.8
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-eeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~-~~kTk---~t~nP~Wn 471 (471)
.|.|+|.+|+.+.. .+.+||||+++++++ ..||+ ++.||+||
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wn 50 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWN 50 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccc
Confidence 68999999985444 357999999999887 55776 89999998
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00013 Score=63.58 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=38.1
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
....|.|.|.+||+|+.+. ||||++.+++... ||+ ++.||.||
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~--~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~ 55 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK--RYYCELCLDKTLYARTTSKLKTDTLFWG 55 (146)
T ss_pred EEEEEEEEEEEccCCCCcC--CceEEEEECCEEEEEEEEEcCCCCCcce
Confidence 4568999999999999854 8999999999886 887 88999997
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00015 Score=60.03 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=29.9
Q ss_pred EEeeeecCCC---CCCCCcEEEEEEcCee------eeeC---CCCCCcCC
Q 012089 434 LVQGAEDVEG---ENHNNPYAIILYKGDK------KRTK---KNSRPCLE 471 (471)
Q Consensus 434 ~v~~Ak~L~~---~~~~dpyv~v~~~~~~------~kTk---~t~nP~Wn 471 (471)
..++|++|+. .+.+||||++++.++. .||+ ++.||+||
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn 54 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK 54 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE
Confidence 3449999986 3589999999986542 3776 89999997
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00022 Score=60.10 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=30.4
Q ss_pred EeeeecCCC---CCCCCcEEEEEEcCee-------eeeC---CCCCCcCC
Q 012089 435 VQGAEDVEG---ENHNNPYAIILYKGDK-------KRTK---KNSRPCLE 471 (471)
Q Consensus 435 v~~Ak~L~~---~~~~dpyv~v~~~~~~-------~kTk---~t~nP~Wn 471 (471)
.++|++|+. .+.+||||++++.+.. .||+ +|.||+||
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wn 55 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFV 55 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCce
Confidence 359999986 3679999999997754 4776 99999997
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0003 Score=59.76 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=33.1
Q ss_pred EEEEEEeeeecCCC-----CCCCCcEEEEEEcC------eeeeeC---CCC-CCcCC
Q 012089 430 LLSVLVQGAEDVEG-----ENHNNPYAIILYKG------DKKRTK---KNS-RPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~-----~~~~dpyv~v~~~~------~~~kTk---~t~-nP~Wn 471 (471)
.|+|+|++|+||+. .+.+||||++++.+ ...||+ ++. ||+||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~ 59 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWN 59 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccC
Confidence 68999999999985 35799999999943 334665 454 99997
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00015 Score=70.62 Aligned_cols=109 Identities=25% Similarity=0.337 Sum_probs=85.6
Q ss_pred CceEEEEEEEEccccccCccC-CCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 012089 262 PVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~-d~ 337 (471)
..|.+.|.|++|++|..+-.. ..++|||+|++.+.. ..+.+|+...+|.+|.+.....|.-. +....|.+.+| |+
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGDY 345 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEeccc
Confidence 479999999999999865432 368999999997653 34568888899999988776666643 44678999999 56
Q ss_pred CCCCCCCeeEEEEEECcccCCCC-ceEEEEecccc
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLKH 371 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l~~~ 371 (471)
.++.++.|+|.+.+-+.++.... ....|+++...
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 67777889999999999998665 66788887653
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=8.8e-05 Score=80.11 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=84.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---------CCCeEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQ 333 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------~~~~L~v~ 333 (471)
.--+++.|.+|+.|...|..+.+|||+.+.+.++.. .|.++.+|+||.|+++..|.-.+. .-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~---~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSK---ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccc---eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 445678889999999999999999999999887654 899999999999999988853211 12468899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
+||.++.+.++++|+......-... .+.-.|.+... ++...|++.++.
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r--------g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR--------GAFLDGDVLIAA 329 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeec--------ccccccchhHHH
Confidence 9999999999999997654332222 33445555443 244556655544
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00052 Score=55.52 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=35.9
Q ss_pred EEEEEeeeecCCC------CCCCCcEEEEEEcCeee-eeCCCCCCcCC
Q 012089 431 LSVLVQGAEDVEG------ENHNNPYAIILYKGDKK-RTKKNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~------~~~~dpyv~v~~~~~~~-kTk~t~nP~Wn 471 (471)
|.|+|+.|||++. .+.+||||.+.+++..+ |||-+.||.||
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~srnd~Wn 48 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPSRNDRWN 48 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCCCCCccc
Confidence 6789999999985 35789999999998855 99988999997
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0004 Score=59.10 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.+.+||||++++++++.||+ +|.||+||
T Consensus 17 ~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wn 47 (126)
T cd08682 17 SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWK 47 (126)
T ss_pred CcCCCceEEEEECCeeeeeeeecCCCCCEeC
Confidence 45799999999998888887 89999998
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00082 Score=59.05 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
++.+||||++.+++++.||+ ++.||+||
T Consensus 32 ~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWN 62 (151)
T cd04018 32 KELVDPYVEVSFAGQKVKTSVKKNSYNPEWN 62 (151)
T ss_pred CCCcCcEEEEEECCEeeecceEcCCCCCCcc
Confidence 45799999999999888887 99999998
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.001 Score=56.66 Aligned_cols=28 Identities=29% Similarity=0.582 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.+.+||||+++++++++||+ ++.||+||
T Consensus 18 ~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wn 48 (127)
T cd04022 18 QGSSSAYVELDFDGQKKRTRTKPKDLNPVWN 48 (127)
T ss_pred CCCcCcEEEEEECCEEecceeEcCCCCCccc
Confidence 45799999999999888887 89999998
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0012 Score=65.10 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=90.6
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEc--CccccceeeeeecCCCCCeEeeEEEEEeecCC-----------CC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-----------SQ 328 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~--~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-----------~~ 328 (471)
..-.|++.|+++.+++........|-|+.+.+. .+.....+|.++++|.+|.|+|.|.+.+.... ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677777888877654322234678777652 22223448999999999999999999987411 34
Q ss_pred eEEEEEEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 329 ILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 329 ~L~v~v~d~d~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
.++|++|.+..+ ..|.++|.+.+.|..|.........++|... .....|.|.+.++.-
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 689999998765 4588999999999999988777778887543 245678888888765
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0013 Score=72.38 Aligned_cols=58 Identities=22% Similarity=0.444 Sum_probs=48.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
++..|+|.|+++| ..|.|+|.|+.||+|+- ...+|||||.|+.
T Consensus 1509 ~~iggqV~LsIsY----------------------------------~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISY----------------------------------NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLL 1554 (1639)
T ss_pred cccCceEEEEEEE----------------------------------cCceEEEEhhhhcccccccCCCCCCcceeEEec
Confidence 4566799999998 36899999999999963 4589999999997
Q ss_pred Ceee-----eeC---CCCCCcCC
Q 012089 457 GDKK-----RTK---KNSRPCLE 471 (471)
Q Consensus 457 ~~~~-----kTk---~t~nP~Wn 471 (471)
.+.+ ||| ||.||.||
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfn 1577 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFN 1577 (1639)
T ss_pred CCchHhhhhhhccccccCCCchh
Confidence 6543 777 99999987
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0013 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
.|.+||||+++++++. .||+ ++.||+||
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wn 41 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWN 41 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccC
Confidence 3579999999998764 3665 99999998
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0029 Score=50.00 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=34.3
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-~~~kTk---~t~nP~Wn 471 (471)
|.|.|++|++|+. .+.+||||++++.+ ...+|+ ++.||.||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~ 48 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWN 48 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCccc
Confidence 4689999999976 35799999999988 555776 77899997
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0022 Score=55.31 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 443 GENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..+.+||||+++++++++||+ +|.||+||
T Consensus 18 ~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wn 49 (135)
T cd04017 18 KSGLSDPFARVSFLNQSQETEVIKETLSPTWD 49 (135)
T ss_pred CCCCCCCEEEEEECCeeeEeeeEcCCCCCccC
Confidence 346799999999998888887 89999998
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0049 Score=48.94 Aligned_cols=41 Identities=29% Similarity=0.547 Sum_probs=34.3
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe---eeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~---~~kTk---~t~nP~Wn 471 (471)
+.+.|++|++|... +..+|||++.+.+. ..+|+ ++.||.||
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~ 51 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWN 51 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCccc
Confidence 67899999999874 46999999999875 45776 66799997
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0025 Score=56.54 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=24.6
Q ss_pred CCCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 443 GENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
+.+.+||||++.+++.+. ||+ ++.||+||
T Consensus 54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 54 GKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 357899999999998664 787 88999998
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.16 Score=43.90 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=80.1
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeee-cCCCCCeEeeEEEEEeec--------CCCCeEEE
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKE--------PESQILQL 332 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~--------~~~~~L~v 332 (471)
..-.+.|+|++..+++. ....-||+...+.......+|... ..+-.-.|||.|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34567888999988876 223445555555443212233322 234456899999987641 12457889
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEeccC
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (471)
.|+....-++...+|.+.++|.+.... ......++|... .+....|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 999885333336899999999999874 455566665431 356678999999888543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.081 Score=46.76 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=60.5
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~ 337 (471)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 45789999999987643 4688888865 433331 12344333 357999999999765 2 2367899999998
Q ss_pred CCCC----CCCeeEEEEEECccc
Q 012089 338 DKVG----GHDRLGMQLVPLKLL 356 (471)
Q Consensus 338 d~~~----~d~~lG~~~i~L~~l 356 (471)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 124699999998763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.19 Score=50.03 Aligned_cols=121 Identities=16% Similarity=0.266 Sum_probs=88.3
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEee-------cCCCCeEEEEEEEcC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK-------EPESQILQLQVFDWD 338 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-------~~~~~~L~v~v~d~d 338 (471)
+.|+|++|+|.+... ...-.+..++++... .|..+..+-.|.||......+. ......+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 568899999998752 345678888888776 6777788889999988777664 223678999999998
Q ss_pred -CCCCCCeeEEEEEECccc---CCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 012089 339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (471)
Q Consensus 339 -~~~~d~~lG~~~i~L~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (471)
.-++.+.+|.+.++|+.. ..+ .....|++|...... -.+.+-+|.+.+......
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~----y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK----YKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccc----cccCCccEEEEEEEeccc
Confidence 556778999999999998 444 456688888763211 123456777777766543
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.068 Score=46.75 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=87.8
Q ss_pred CceEEEEEEEEccccccCccC--CCCCc--EEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-----------
Q 012089 262 PVGILHVKVVRASKLLKKDFL--GTSDP--YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----------- 326 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~--g~~DP--yv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----------- 326 (471)
..-.|+++|..++-.-..-.. +..+. ++.+.++++++ +|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF---~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRF---RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceE---ecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 346688888888754321110 33344 44445566665 8888999999999999999987432
Q ss_pred --CCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce--EEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 327 --SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 327 --~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
.+.+.+.|.-.|..+...++|.-.++.+.+...... .....|..... ...-..|-|.++++.+|.
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~----e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGP----ESKVPVGILDLRLELLPN 152 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCC----CCccceeEEEEEEEeecC
Confidence 356888888888777778999999999887755443 45555543211 123578999999999984
|
|
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0042 Score=52.73 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCCCCCcEEEEEEcC--eeeeeC---CCCCCcCC
Q 012089 443 GENHNNPYAIILYKG--DKKRTK---KNSRPCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~--~~~kTk---~t~nP~Wn 471 (471)
..+.+||||++++++ ++.||+ +|.||+||
T Consensus 14 ~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wn 47 (126)
T cd08678 14 AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWD 47 (126)
T ss_pred CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccC
Confidence 446899999999974 345776 88999998
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.077 Score=47.74 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=60.0
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~ 337 (471)
..++|+|+++.++...+ ...+-||.+.+ +++... ...|+.+.-+.++.|||...|.+. + +....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 35789999999998622 34667777644 444332 224554444567999999999765 2 3367899999997
Q ss_pred CCCC----------------CCCeeEEEEEECcc
Q 012089 338 DKVG----------------GHDRLGMQLVPLKL 355 (471)
Q Consensus 338 d~~~----------------~d~~lG~~~i~L~~ 355 (471)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 6422 13578888877765
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.022 Score=61.39 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=68.2
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCc----cccceeeeeec-CCCCCeEe-eEEEEE-eecCCCCeEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE----KLPWKKTTVKK-KNLNPEWN-ENFKLV-VKEPESQILQLQVF 335 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~----~~~~~kT~v~~-~t~nP~wn-e~f~f~-v~~~~~~~L~v~v~ 335 (471)
.+.+.|+|+++.=|..++. ..||.|.+-+- ....++|++.. +++||+|+ |.|.|. |.-++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 5678999999998887653 48999988542 12345676654 78999999 567775 33445578999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
+.+. +++|+=.+|+..+..+-
T Consensus 778 eEgg----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccCC----ceeeeeccchhcccCcc
Confidence 9863 59999999999998874
|
|
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.018 Score=49.19 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCCCcEEEEEEcCe-------eeeeC---CCCCCcCC
Q 012089 445 NHNNPYAIILYKGD-------KKRTK---KNSRPCLE 471 (471)
Q Consensus 445 ~~~dpyv~v~~~~~-------~~kTk---~t~nP~Wn 471 (471)
+.+||||++++.+. +.||+ +|.||+||
T Consensus 19 ~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wn 55 (133)
T cd04033 19 GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWN 55 (133)
T ss_pred CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEe
Confidence 57999999999765 23665 99999998
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.076 Score=46.90 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=59.6
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (471)
.++|++....++...+ ....+-||.+.+ +++... ...|.....+.++.|||...|.+. + +....|.+.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788877776421 234566777754 433221 223333333368999999999864 2 23678999999987
Q ss_pred CCC--CCCeeEEEEEECccc
Q 012089 339 KVG--GHDRLGMQLVPLKLL 356 (471)
Q Consensus 339 ~~~--~d~~lG~~~i~L~~l 356 (471)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 457899999998764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.039 Score=52.83 Aligned_cols=119 Identities=19% Similarity=0.235 Sum_probs=76.9
Q ss_pred cCCceEEEEEEEEccccccCcc--CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 260 KKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~--~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
....|+|.+++..+++|+-... +-.-+-||++..+.+. ..+|.+.....-=.|.|+|+..+.+. ..+.+-||.|
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeecccc--eeeeEEEeec
Confidence 3456999999999999975432 3456899999887544 34666655555557899999988753 5789999999
Q ss_pred CCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+...++++.-.-.+.+..+... ..+...+. -+++|++.+++.+..
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLAD 168 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccCC
Confidence 8766666422222333333222 22222222 356788888877653
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.028 Score=46.98 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=22.9
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEc-Ce---eeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGENHNNPYAIILYK-GD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~~~~dpyv~v~~~-~~---~~kTk---~t~nP~Wn 471 (471)
|.|+|++|+||++...+= -.--.-. ++ +.||| +|+||+||
T Consensus 1 L~V~V~~A~~L~~~sDPY-V~l~v~~~~~~~~~~KTk~i~~TlnPvWn 47 (118)
T cd08686 1 LNVIVHSAQGFKQSANLY-CTLEVDSFGYFVKKAKTRVCRDTTEPNWN 47 (118)
T ss_pred CEEEEEeCCCCCCCCCCE-EEEEEcCccccceeeeeeeecCCCCCccc
Confidence 579999999997520000 0000000 11 23777 99999998
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.12 Score=46.31 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=62.7
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCccccc-eeeeeec----CCCCCeEeeEEEEEee--c-CCCCeEEEE
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK--E-PESQILQLQ 333 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~~-~kT~v~~----~t~nP~wne~f~f~v~--~-~~~~~L~v~ 333 (471)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 467899999999988765456788888865 4433321 1333211 1235779999999875 2 336789999
Q ss_pred EEEcCCCC---------CCCeeEEEEEECccc
Q 012089 334 VFDWDKVG---------GHDRLGMQLVPLKLL 356 (471)
Q Consensus 334 v~d~d~~~---------~d~~lG~~~i~L~~l 356 (471)
+|+....+ .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99987543 346899999988663
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.48 Score=37.32 Aligned_cols=86 Identities=27% Similarity=0.388 Sum_probs=60.0
Q ss_pred CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce
Q 012089 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362 (471)
Q Consensus 283 g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~ 362 (471)
|.++-.+.+.+++... .+|.-+. ..+..|++.|.+.+.. +.+|+|.||-+|. ..+-|..-+.|++.. +
T Consensus 7 ~~~eV~avLklDn~~V--gqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~----~ 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVV--GQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDER----H 74 (98)
T ss_pred cccceEEEEEEcCeEE--eeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhc----c
Confidence 3467888898886543 3565533 3477899999999974 5789999998873 346677777787732 1
Q ss_pred EEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 363 EFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
...++ -.+.|.+..+++|
T Consensus 75 ~~~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 75 EVQLD------------MEPQLCLVAELTF 92 (98)
T ss_pred cceec------------cccccEEEEEEEe
Confidence 22232 3567888888887
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.16 Score=44.91 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=51.8
Q ss_pred CCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcCCCCCCCeeEEEEEECccc
Q 012089 283 GTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (471)
Q Consensus 283 g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l 356 (471)
..+|-||.+.+ ++.... ..+|+.+.-+..+.|||...|++. + +....|.|++||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45678888765 332221 124555555567889999999875 2 23678999999998655677899999998764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.039 Score=60.29 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
.+++||||++.++++++ ||+ ++.||+||
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWN 105 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWD 105 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcc
Confidence 46799999999987755 787 88999998
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.1 Score=40.09 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCccccceeeeee--cCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 012089 284 TSDPYVKLSLTGEKLPWKKTTVK--KKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (471)
Q Consensus 284 ~~DPyv~v~l~~~~~~~~kT~v~--~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~ 358 (471)
+..-|+++.++++.. .+|+.. .....=.|||.|.+.+... -+.|.++||.... ..+..|+++.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 456799999997655 355443 2344456899999999764 4689999999986 678899999999865543
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.4 Score=41.55 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=44.0
Q ss_pred EcCcccc--ceeeeeecCC-CCCeEeeEEEEEee--c-CCCCeEEEEEEEcCCCCCC----CeeEEEEEECccc
Q 012089 293 LTGEKLP--WKKTTVKKKN-LNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGH----DRLGMQLVPLKLL 356 (471)
Q Consensus 293 l~~~~~~--~~kT~v~~~t-~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----~~lG~~~i~L~~l 356 (471)
.+++... ...|+...-+ .++.|||...|.+. + +....|.|.||+.+....+ ..||.+.++|-+.
T Consensus 12 ~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 12 HGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp ETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred ECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 3544443 2356555555 79999999999875 2 3467899999998865554 5899999998765
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.44 Score=42.90 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.2
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEE--cCccccceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (471)
.++|+|.++..+. .+......-||++.+ ++......+|+.+.-+.++.|||...|.+. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677788776432 222222335666533 433333335666666678999999888865 2 23678999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.15 Score=50.23 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=34.7
Q ss_pred cceEEEEEEeeeecCCC----CCCCCcEEEEEEcCeee-----eeC---CCCCCcC
Q 012089 427 GAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGDKK-----RTK---KNSRPCL 470 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~~~~~~-----kTk---~t~nP~W 470 (471)
..|-+.|.|++|++|-. +..++|||+||+..... ||| +|.+|.|
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~ply 322 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLY 322 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhh
Confidence 67899999999999975 34799999999865432 676 7877754
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.3 Score=40.31 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=42.6
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCC--CCeeEEEEEECc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG--HDRLGMQLVPLK 354 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~~~--d~~lG~~~i~L~ 354 (471)
..++|.+...+.+|.|+|++.+.+... ....|.|++++...-.+ ...+|.+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 356888899999999999999988633 35679998888653222 257999999984
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.32 Score=51.04 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=33.7
Q ss_pred cceEEEEEEeeeecCCC--------CCCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~--------~~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
....|.|.|+.|++++. ...+||||+|.+.|- .+||+ ++.||+||
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWn 467 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWG 467 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceec
Confidence 35689999999998741 135899999998652 22555 77899998
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.6 Score=38.42 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=42.5
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCC-CCC---CeeEEEEEECc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-GGH---DRLGMQLVPLK 354 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~-~~d---~~lG~~~i~L~ 354 (471)
..++|.+...+.+|.|+|++.+.+... ....|.|++++.... .+| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999988632 366799999886522 122 47999999985
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.68 Score=49.53 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=33.2
Q ss_pred ceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~--~-------~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
...|.|.|+.|++++. . ..+||||+|.+-+ .++||+ ++.||+||
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWn 529 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWN 529 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccC
Confidence 4689999999998742 1 2359999999865 233777 66999998
|
|
| >cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=89.17 E-value=6.5 Score=35.65 Aligned_cols=107 Identities=15% Similarity=0.225 Sum_probs=62.6
Q ss_pred hcccccCCceeeeccCcccccccCCceE-EEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeE
Q 012089 238 AGIYIWPQTYEIPILDASSVAIKKPVGI-LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEW 314 (471)
Q Consensus 238 ~~~~v~P~~~~i~l~~~~~~~~~~~~G~-L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~w 314 (471)
...+|+|..+.+.-.. .+..++++ ++|.+.+..+- ...|.-.++.+... .....|.+...+.+|.|
T Consensus 3 N~LYVYP~~l~~~~~k----~~~kaRNI~V~V~lrd~D~~-------~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f 71 (185)
T cd08697 3 NHLYVYPLHLKYDSQK----TFAKARNIAVCIEFRDSDEE-------DAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEF 71 (185)
T ss_pred ceEEEcccEEEecccc----cccccccEEEEEEEEeCCCC-------cCccceEEecCCCCCcceEEEEEEEEcCCCCcc
Confidence 3467888877655221 12223332 55665554321 11232233333221 23457888888999999
Q ss_pred eeEEEEEeecC--CCCeEEEEEEEcCCC--C-------CCCeeEEEEEECcc
Q 012089 315 NENFKLVVKEP--ESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL 355 (471)
Q Consensus 315 ne~f~f~v~~~--~~~~L~v~v~d~d~~--~-------~d~~lG~~~i~L~~ 355 (471)
+|++.+.+.-. ...-|.|+.|+.+.. . ....+|.+.+||-.
T Consensus 72 ~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 72 YDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 99999887632 356799999997521 1 12458888888755
|
Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=89.05 E-value=2.3 Score=34.42 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=45.5
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (471)
+.+.+..+.+..-......+|-||.+.+ +++... ...|+.+.-+..+.|||...|.+. + +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4456666666554432223578888865 433332 224555444556899999998765 2 33678999999975
|
Outlier of C2 family. |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=87.35 E-value=0.97 Score=48.23 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=32.7
Q ss_pred ceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~----~-----~~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
...|.|+|+.|++++ . ...+||||+|.+-+ .++||+ ++-||+||
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~ 511 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWD 511 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccC
Confidence 467999999998753 1 13579999999853 224777 66899998
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=87.11 E-value=2.4 Score=38.39 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=35.0
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCCCCC---CCeeEEEEEECcc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGG---HDRLGMQLVPLKL 355 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v~d~d~~~~---d~~lG~~~i~L~~ 355 (471)
....|.+..++.+|.|+|+|.+.+.... ...|.|++++...-.+ +..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3457788888899999999999887433 5689999999764322 1689999999987
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.96 Score=48.37 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=33.5
Q ss_pred cceEEEEEEeeeecCCC---C------CCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---E------NHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~------~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
....|.|.|+.|++++. + ..+||||+|.+-+- ++||+ ++.||+||
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wn 528 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWN 528 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccC
Confidence 34679999999998641 1 24799999998542 23666 77899998
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.20 E-value=0.98 Score=48.93 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=33.9
Q ss_pred ceEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eeeeeC----CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTK----KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~~--~~~dpyv~v~~~~-----~~~kTk----~t~nP~Wn 471 (471)
.-.|.|.|+.||.|+.+ +..-|||++.+-| .++||+ +.+||+||
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn 1118 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWN 1118 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCC
Confidence 35789999999999964 3456999998754 333555 88999998
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=83.30 E-value=1.4 Score=47.68 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=33.3
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEE-EEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAII-LYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v-~~~~~~~kTk---~t~nP~Wn 471 (471)
-+|++.++|.+|+ .+..|||+.+ ++|.+..||. +|.||+||
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~ 96 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWN 96 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccc
Confidence 6899999999998 3346997766 5677777987 99999998
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.8 Score=46.03 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=31.6
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcCee-----eeeC---CCCCCcC
Q 012089 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKGDK-----KRTK---KNSRPCL 470 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~------~~~dpyv~v~~~~~~-----~kTk---~t~nP~W 470 (471)
...|.|.|++|++|+. . ..+||||+|.+.+-. .||+ ++.||+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W 489 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIW 489 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceE
Confidence 4579999999998731 1 248999999985422 2777 5579999
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=80.86 E-value=1.2 Score=38.06 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=22.2
Q ss_pred CCCCCCcEEEEEEcCe---eeeeC---CCCC--CcCC
Q 012089 443 GENHNNPYAIILYKGD---KKRTK---KNSR--PCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~~---~~kTk---~t~n--P~Wn 471 (471)
+...+||||++.+.+. ++||. +++| |.||
T Consensus 21 g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FN 57 (133)
T cd08374 21 GEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFN 57 (133)
T ss_pred CccccCeEEEEEEccCcccccccceEEecCCCCcEEe
Confidence 4446999999999764 23676 8888 9987
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 471 | ||||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-07 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 7e-07 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 2e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 4e-06 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 5e-06 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 2e-05 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 4e-05 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 4e-04 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 5e-04 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 8e-04 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 8e-04 |
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 3e-42
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 5/170 (2%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNE 316
++ VKV+ L KKD LG SDPYV+++L +T KK+LNP+WNE
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V P+ + +VFD +++ D LG VPL L + K +
Sbjct: 64 EILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122
Query: 377 P-KDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEAL 425
+ +G + +++TY+P + + +++ DQ L
Sbjct: 123 RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHL 172
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-41
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S P G L V +V A L DFL DPYV+L+ + K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
E F V E ++ L+ ++FD D D +G +PL+ + + T +
Sbjct: 60 ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV------ 112
Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
KD + +G+I V L++ P S
Sbjct: 113 -VKDEEYKGEIWVALSFKPSGPSS 135
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-41
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
G+L V V A + K G DP V + EK KKT LNP WNE +
Sbjct: 3 SGSSGMLRVIVESA-SNIPKTKFGKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILE 58
Query: 320 LVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
++ S L + V D++ +G + +G V LK LT +++ L+ + +
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLN 115
Query: 377 PKDMKQRGKIVVELTYVPFKEDS 399
K I + + Y P S
Sbjct: 116 EKGQDTGATIDLVIGYDPPSGPS 138
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-41
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW---KKTTVKKKNLNPEWNE 316
++ I+ V+V+ L KKD LG SDPYV+++L +T KK+LNP+WNE
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V P+ L +VFD +++ D LG VPL L + K +
Sbjct: 76 EILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 377 P-KDMKQRGKIVVELTYVP 394
+ +G + +++TY+P
Sbjct: 135 RSHKSRVKGYLRLKMTYLP 153
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-40
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
+ S K VGIL VKV++A+ LL DF G SDP+ L L ++L +T KNLNPE
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPE 59
Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
WN+ F +K+ +L++ VFD D D LG +PL + + + L
Sbjct: 60 WNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-- 116
Query: 374 ISDPKDMKQRGKIVVELTYV 393
+ +G I +E+ +
Sbjct: 117 -----EQAFKGVIYLEMDLI 131
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-35
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE F+ ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+ +L++ + D + + LG + + E KE +
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113
Query: 383 RGKIVVELT 391
+ + L
Sbjct: 114 EMVLEMSLE 122
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-34
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK 307
E + + K + + VV A L KD G+SDPYV + + K K+T
Sbjct: 1 EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIY 57
Query: 308 KNLNPEWNENFKLVVKEPESQILQLQVFDWD-----------KVGGHDRLGMQLVPLKLL 356
NLNP W ENF S ++++V D D K D LG ++ ++ L
Sbjct: 58 GNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
Query: 357 TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392
+ + LD G I + ++
Sbjct: 117 SGEMDVWYNLD-------KRTDKSAVSGAIRLHISV 145
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 8e-34
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK---L 320
L VK+++A +L KDF GTSDP+VK+ L +K +T VK+KNLNP WNE F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
++ +IL LQV D+D+ +D +G +PL + + + F DL S
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS 140
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-33
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + V+ A L KKDF DP+ K+ + G T K L+P+WN+++ L V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQC-HSTDTVKNTLDPKWNQHYDLYV--G 63
Query: 326 ESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMK 381
++ + + V++ K+ LG + ++ +T LDL K +
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL---NPSDTDA 120
Query: 382 QRGKIVVELTY 392
RG+IVV L
Sbjct: 121 VRGQIVVSLQT 131
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-33
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 41/206 (19%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE FK+
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
E + L + V+D+D+ HD +G VP+ + E DL + ++ +
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA----EKEEQE 134
Query: 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED- 440
+ G I L YVP AG L+V++ A++
Sbjct: 135 KLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNL 162
Query: 441 --VEGENHNNPYAIILYKGDKKRTKK 464
++ ++PY I + KR KK
Sbjct: 163 KKMDVGGLSDPYVKIHLMQNGKRLKK 188
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 7e-20
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFK 319
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE +F+
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
+ ++ + + + V D+DK+G +D +G V
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 243
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-32
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 255 SSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW 314
S+ L + V+ A K PYV++++ G+ KKT +P+W
Sbjct: 27 GSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKW 83
Query: 315 NENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
+ ++V L +V+ + LG + + E TL L
Sbjct: 84 KQPLTVIVT--PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG 141
Query: 370 KHTNISDPKDMKQRGKIVVEL 390
D + + G + + L
Sbjct: 142 -----GDKEPTETIGDLSICL 157
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 7e-31
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFK-- 319
L ++RA L D G +DPYVKL L K +T + NP WNE +
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
+ ++ + + L++ V D DK G ++ +G LK L ++ K F + L +
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-30
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-29
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE F V
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101
Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
+L V V A L+ D G SDPYVKL L + +KT K +LNPEWNE F+
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+KE + + L ++++DWD +D +G + L + LL
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 140
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 118 bits (295), Expect = 2e-28
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 260 KKPVGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
+ V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
F+ ++ + +L++ + D + V + LG + + E KE + T +
Sbjct: 74 TFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 377 PKDMKQR 383
++
Sbjct: 133 EMSLEVC 139
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 44/208 (21%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V++++A L KD G SDPYVK+ L ++ +T V +K LNP +NE F+ V
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79
Query: 324 --EPESQILQLQVFDWDKVGGHDRLGMQLVP--LKLLTPHETKEFTLDLLKHTNISDPKD 379
E + L V+D+D+ HD +G ++ L+L + D+L+ +
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SE 134
Query: 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAE 439
G++ L Y+P AGLL+V + A
Sbjct: 135 KADLGELNFSLCYLPT--------------------------------AGLLTVTIIKAS 162
Query: 440 DVEGENHN---NPYAIILYKGDKKRTKK 464
+++ + +PY + +R KK
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKK 190
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 6e-21
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFK 319
G+L V +++AS L D G SDPYVK SL G +L +KT++KK LNP +NE F
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+ + E+ L + V D+D +G ++ +G+ V + PH + + ++L +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWA-EMLAN 262
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-26
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 22/157 (14%)
Query: 245 QTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF----------LGTSDPYVKLSLT 294
+ + + S K G L V++ A L + DPY+ +S+
Sbjct: 10 HSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD 69
Query: 295 GEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
++ +T+ K+K P +NE F V + L+L VF +G + + +
Sbjct: 70 QVRV--GQTSTKQKTNKPTYNEEFCANV--TDGGHLELAVFHETPLGYDHFVANCTLQFQ 125
Query: 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391
L T + D++ GK+ V +T
Sbjct: 126 ELLRTTGASDTFEGW--------VDLEPEGKVFVVIT 154
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-24
Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 25/143 (17%)
Query: 261 KPVGILHVKVVRASKLLKKDF-----------LGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
G+L +K+ A L + DPY+ L++ ++ +T K+K
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKT 60
Query: 310 LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
+P W++ F V ++L VF +G D + + + L + ++ F +
Sbjct: 61 NSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI- 117
Query: 370 KHTNISDPKDMKQRGKIVVELTY 392
D++ GK+ V +
Sbjct: 118 ---------DLEPEGKVYVIIDL 131
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-24
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V + A L D TSDPY+K+++ EK KT V +K L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKH 371
L + +D+ D +G L+PL + +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 5e-24
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVV 322
L V + A + G D YV+ S+ + +T +KK+ L+ W E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
E E + L L + D+ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 7e-24
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW-----------KKTTVKKKNLNP 312
G L + +++A L+ +D G SDP+VK+ L + ++T +K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 313 EWNENFKLVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
EWN+ E + L++ V+D+D+ +D LG L+ L + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
Query: 370 KHT 372
+ T
Sbjct: 138 EQT 140
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 6e-23
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKL 320
L V V +L D S+PYVK L + +KT++K+ +NP ++E +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
+ E + LQ V+ + G + LG + + + + L L
Sbjct: 83 EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 1e-22
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 264 GILHVKVVRASKL-------LKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
L V+V+ A L + + S+PYVK+ L ++ K+T VK+K P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 317 NFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+ + E + L L V D+DK H +G VPL + + + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-22
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 242 IWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLT--GEKL 298
+ QT P + + ++ G L V+V+RA L +K T PYVK+ L G +
Sbjct: 8 VGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI 67
Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DWDKVGGHDRLGMQLVPLKLLT 357
KKT + +K L+P + ++ P+ ++LQ+ V+ D+ ++ +G+ + L+ L
Sbjct: 68 AKKKTRIARKTLDPLYQQSLVFDE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126
Query: 358 PHETKEFTLDLLKHTNISDP 377
L +++ DP
Sbjct: 127 LSSMVIGWYKLFPPSSLVDP 146
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 7e-22
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++R L D G SDP+VKL L K KT +KKK LNPE+NE F
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
+K + + L + V+D+D +D +G + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-21
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+ V +++A L D GTSDPYVK+ L +++ KKT KK+NLNP +NE+F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + + + V D DK+ +D +G + K
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 6e-21
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE+F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
V + + + V D+DK+G +D +G V
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 7e-21
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKL 320
+ +++ S L +++++ + +T + +NE F +
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ P + L++ V D+ + LG + L
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLA 138
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-21
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V V L+ SDPYV++ L + +KT V KK LNP ++++F
Sbjct: 24 NKLIVVVHACRNLIAFSE-DGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHT 372
V PE + L + V + D+ LG LV L + DL + +
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-20
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V V++A L K D G SDPYVK++L +++ KKT VKK N +NE F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPL 353
+ P + ++ V D ++ ++ +G ++
Sbjct: 90 I--PCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-20
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFK-- 319
G L + V+ L+ +D +PYVK L K +KT + +K NP +NE
Sbjct: 20 GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374
+ + LQL V + + + LG +PLK + L T +
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL 134
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-20
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
++L++ ++D +V + LG L+ L+ +
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 7e-20
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
++L++ ++D +V + LG L+ L+ +
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-19
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+L + ++ L+ K GT DPYVK+SL +L +KT +P ++E+F
Sbjct: 27 RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 322 VKEPESQI-LQLQVFDWDKVGGHDR-LGMQLVPLK 354
V+E + Q L + V++ +G +K
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK 120
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 76.5 bits (187), Expect = 5e-15
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL- 320
+ L V RA L +D Y+K+ G++ +T V N NP W +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYT-TATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFE 447
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
V L++QV+D D D LG
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 8e-14
Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP-EWNENFKLVVKE 324
L V + S+L G +D K++ G+ + V + + +++E F+ V
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74
Query: 325 P--ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+++L++Q+F++ KV + +G + L+ + E + L+ D +
Sbjct: 75 SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLI------DDNNAII 128
Query: 383 RGKIVVELTYVP 394
+ + +E+ Y
Sbjct: 129 KTSLSMEVRYQA 140
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 4e-10
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + K TT+ + P W ++F +
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 57
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++V++ + +G +PL+
Sbjct: 58 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 86
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTS--DPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKL 320
L V+++ +L K + S DP V + + G + + + NP W+ F+
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
V P+ +++ V D+D +D +G +P L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 3e-08
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNL---NPEWNENFKLVV 322
L + ++ A +L K Y +L L + +TT K ++ W E+F+
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDM--LYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 323 KEPESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPHETKE 363
+ D DK D+ +G+ VP+ L E
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTE 109
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + + TT+ + P W ++F +
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++V++ + +G +PL+
Sbjct: 67 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 95
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
+G L V V+ A++L G S+PY ++S+ + T + LNP+WN N +
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQF 440
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKD 379
+K+ +L L +FD D+ D LG +P+ + T E+K L +
Sbjct: 441 FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----- 495
Query: 380 MKQRGKIVVELTYVPF 395
G++ V F
Sbjct: 496 --PTGEVWVRFDLQLF 509
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 7e-04
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTV--KKKNLNPEWNENFKL 320
L + + + G +PY + + KK + P W+ F
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 321 VVKEPESQILQLQVFD 336
+ + +++Q+ V
Sbjct: 70 HIN--KGRVMQIIVKG 83
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Length = 816 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 7e-04
Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-----EKLPWKKTTVKKKNLNPEW 314
G + +K++ A L K YV++ + G + +K ++ ++P +
Sbjct: 646 GVVAGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYY 701
Query: 315 NEN--FKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
+E V P+ ++++ V + + +G +++PL + P
Sbjct: 702 DEKVFVFKKVVLPDLAVVRIIVSEEN----GKFIGHRVMPLDGIKP 743
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.95 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.94 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.87 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.86 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.85 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.85 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.84 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.84 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.84 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.84 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.83 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.81 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.8 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.79 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.79 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.79 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.79 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.78 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.77 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.75 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.75 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.75 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.75 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.75 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.74 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.74 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.74 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.74 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.74 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.73 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.72 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.72 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.71 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.71 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.69 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.69 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.68 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.66 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.61 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.59 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.55 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.54 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.46 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.42 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.27 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.18 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.16 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.15 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 99.06 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.97 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 98.84 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 98.82 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 98.81 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 98.79 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 98.78 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 98.77 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 98.77 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 98.76 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 98.76 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 98.74 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 98.74 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 98.72 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 98.72 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 98.71 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 98.71 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 98.68 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 98.68 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 98.59 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 98.55 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 98.51 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 98.45 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 98.45 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 98.43 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 98.38 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 98.37 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 98.35 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 98.35 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 98.25 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 98.23 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 98.22 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 98.17 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 98.16 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 98.09 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 97.85 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 97.7 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 97.59 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 97.49 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 97.25 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 97.17 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 97.04 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 96.85 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 96.56 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 96.52 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 93.61 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 91.23 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 90.48 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 90.23 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 90.0 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 89.37 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 84.34 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=231.14 Aligned_cols=177 Identities=31% Similarity=0.454 Sum_probs=150.7
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d 336 (471)
+....|.|+|+|++|++|+.+|..|.+||||+++++++....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d 93 (284)
T 2r83_A 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD 93 (284)
T ss_dssp EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence 5567799999999999999999999999999999987654567899999999999999999998643 35799999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCC
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGN 416 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
+|.+++|++||++.++|.++..+.....|++|..... ......|+|++.+.|.|
T Consensus 94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~----~~~~~~G~i~l~l~~~p---------------------- 147 (284)
T 2r83_A 94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK----EEQEKLGDICFSLRYVP---------------------- 147 (284)
T ss_dssp CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS----CCCCCCCEEEEEEEEET----------------------
T ss_pred CCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc----ccccccccEEEEEEecC----------------------
Confidence 9999999999999999999998888888998865321 12346799999999987
Q ss_pred CCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--e---eeeeC---CCCCCcCC
Q 012089 417 DQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 417 ~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~--~---~~kTk---~t~nP~Wn 471 (471)
..+.|.|.|++|+||+. .+.+||||++++.+ . ++||+ +|.||+||
T Consensus 148 ----------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wn 203 (284)
T 2r83_A 148 ----------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 203 (284)
T ss_dssp ----------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEE
T ss_pred ----------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEc
Confidence 46799999999999986 36799999999853 2 33776 88999997
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=225.21 Aligned_cols=177 Identities=28% Similarity=0.446 Sum_probs=143.4
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~ 335 (471)
.+....|.|+|+|++|++|+.+|..|.+||||++++.++....++|+++++|+||.|||+|.|.+... ....|+|+||
T Consensus 14 ~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~ 93 (296)
T 1dqv_A 14 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 93 (296)
T ss_dssp ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred EEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEE
Confidence 35667899999999999999999999999999999965544567999999999999999999998643 2458999999
Q ss_pred EcCCCCCCCeeEEEEEE-CcccCC-CCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCC
Q 012089 336 DWDKVGGHDRLGMQLVP-LKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKG 413 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~-L~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~ 413 (471)
|+|.+++|++||++.++ +.++.. ......|++|.... ......|+|++.+.|.|
T Consensus 94 d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~vsl~y~~------------------- 149 (296)
T 1dqv_A 94 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SEKADLGELNFSLCYLP------------------- 149 (296)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS-----SCCSCCCEEEEEEEEET-------------------
T ss_pred EcCCCCCCceEEEEEeccccccccCCccceeeecccccc-----ccccccceEEEEEEecc-------------------
Confidence 99999999999999996 544443 33345566664421 12456799999999987
Q ss_pred CCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 414 SGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
..|.|.|.|++|+||+. .+.+||||++++.. .++||+ +|.||+||
T Consensus 150 -------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wn 205 (296)
T 1dqv_A 150 -------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYN 205 (296)
T ss_dssp -------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEE
T ss_pred -------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeEC
Confidence 46899999999999986 36789999999962 234776 89999997
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=166.50 Aligned_cols=128 Identities=31% Similarity=0.451 Sum_probs=108.8
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---CCCeEEEEEEEc
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDW 337 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~v~v~d~ 337 (471)
...|.|+|+|++|++|+..|. |.+||||+++++++. ++|+++++++||+|||+|.|.+..+ ....|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 456999999999999999998 999999999999754 5999999999999999999999753 357999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
|.+++|++||++.++|.++..+.....|+++....+. .+....|+|+++++|.|.
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~---~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT---TCCEEEEEEEEEEEECCC
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC---CCCCCCCEEEEEEEEECC
Confidence 9999999999999999999888777778773322221 123567999999999984
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=167.72 Aligned_cols=127 Identities=31% Similarity=0.511 Sum_probs=110.4
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
....+.|.|+|+|++|++|+..|..|.+||||+++++++. ++|++++ ++.||.|||+|.|.+.+ ....|.|+|||
T Consensus 4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d 79 (136)
T 1wfj_A 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECC
T ss_pred CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEE
Confidence 3456889999999999999999989999999999998764 4899988 89999999999999987 56799999999
Q ss_pred cCCCCCCCeeEEEEEECcccC-CCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (471)
++.+++|++||++.++|.++. .+.....|++|.. ..+..|+|+++++|.|..
T Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCC
Confidence 999999999999999999994 4444567777752 257899999999999954
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=166.98 Aligned_cols=129 Identities=33% Similarity=0.514 Sum_probs=102.4
Q ss_pred cCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc---ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
....|.|+|+|++|++|+.+|..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 45679999999999999999988999999999998532 2456999999999999999999999764 5789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCce------EEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETK------EFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~------~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
++.+++|++||++.++|.++..+... ..|++|.... ...+..|+|+++++|.|
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence 99999999999999999999866532 4777775431 12467899999999986
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=160.18 Aligned_cols=121 Identities=26% Similarity=0.412 Sum_probs=104.5
Q ss_pred ceEEEEEEEEcccccc---CccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 263 VGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~---~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
.|.|+|+|++|++|+. .|..|.+||||++++++.....++|+++++++||.|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 4899999999999998 4667999999999999754456799999999999999999999976667899999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
. +|++||++.++|.++..+.....|++|.. ...|+|+++++..|
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~----------~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT----------TEEEEEEEEEECCC
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcCC----------CceEEEEEEEEeCC
Confidence 7 48899999999999998888889998742 45788888876543
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=167.39 Aligned_cols=119 Identities=27% Similarity=0.317 Sum_probs=102.6
Q ss_pred ccCCceEEEEEEEEccccccCccC----------CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCC
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQ 328 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~----------g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~ 328 (471)
+....|.|+|+|++|++|+++|.. |.+||||++++++.+ ..+|+++++|+||.|||+|.|.+.+ .+
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~--~~kT~v~~ktlnP~WNE~F~f~v~~--~~ 99 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR--VGQTSTKQKTNKPTYNEEFCANVTD--GG 99 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEE--EC
T ss_pred hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEe--eEEeeecCCCCCCccCcEEEEEcCC--CC
Confidence 446789999999999999998842 679999999998754 2589999999999999999999975 36
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCC----CceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 329 ~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
.|.|+|||+|.+++|++||++.++|.++..+ ...+.|++|. ..|+|+++++|.
T Consensus 100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVITLT 156 (157)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEEEC
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEEEE
Confidence 8999999999999999999999999998754 5678899872 379999999873
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=162.36 Aligned_cols=126 Identities=35% Similarity=0.516 Sum_probs=108.2
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
.+..+.|.|+|+|++|++|+..|..|.+||||+++++++. ++|+++++++||.|||+|.|.+.+. ...|.++|||+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 4677889999999999999999999999999999998764 4899999999999999999999864 57899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+..++|++||++.++|.++..+. ..|++|.... ......|+|+++++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~-----~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD-----LEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC-----TTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC-----CCCccceEEEEEEEEEe
Confidence 99889999999999999997654 3566665321 12467899999999864
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=161.11 Aligned_cols=117 Identities=24% Similarity=0.353 Sum_probs=101.0
Q ss_pred CceEEEEEEEEccccccCccCCC-----------CCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeE
Q 012089 262 PVGILHVKVVRASKLLKKDFLGT-----------SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL 330 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~-----------~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L 330 (471)
..|.|+|+|++|++|++.|..++ +||||++++++.. ..+|+++++|+||.|||+|.|.+.+. +.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L 79 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence 46999999999999999886554 9999999997653 35899999999999999999999764 789
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCCC--ceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 331 ~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.|+|||+|.+++|++||++.++|.++..+. ....|++| .+.|+|+++++|.+
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------CCCeEEEEEEEEEe
Confidence 999999999999999999999999998653 34678765 23799999999986
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-20 Score=159.60 Aligned_cols=123 Identities=30% Similarity=0.436 Sum_probs=103.9
Q ss_pred cCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
....|.|+|+|++|++|+.+|..|.+||||+++++++. ++|+++++|+||.|||+|.|.+..+ .+.|.++|||++.
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~ 88 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD 88 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCC
Confidence 34579999999999999999999999999999997654 4899999999999999999999765 4789999999998
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 340 ~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
. ++|++||++.++|.++. .....|++|.... ......|+|+++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT-----DKSAVSGAIRLHISVE 146 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS-----TTCCCCCEEEEEEEEE
T ss_pred CccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC-----CCCCCceEEEEEEEEE
Confidence 5 78999999999999994 3456788876431 2245789999999984
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=166.09 Aligned_cols=130 Identities=32% Similarity=0.498 Sum_probs=101.0
Q ss_pred cCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc---cceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
....|.|+|+|++|++|+.+|..|.+||||++++.+... ..++|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d 82 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFD 82 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEE
Confidence 346799999999999999999999999999999985322 35699999999999999999999975 35789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCce-E-----EEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETK-E-----FTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~-~-----~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
++.+++|++||++.++|.++..+... + .|++|.... ...+..|+|+++++|.|.
T Consensus 83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC-
T ss_pred CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEeC
Confidence 99999999999999999999866433 1 677775432 134578999999999996
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=152.53 Aligned_cols=125 Identities=29% Similarity=0.438 Sum_probs=100.7
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
....|+|+|++|++|+.+|..|.+||||++++++.. ..++|+++++|+||.|||+|.|.+... +.|.|+|||++.++
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence 347899999999999999999999999999997643 456999999999999999999999764 35999999999887
Q ss_pred C---CCeeEEEEEECcccC-CCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 342 G---HDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 342 ~---d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+ |++||++.+++.++. .......+++|... .+. ...+..|+|++++++
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~~--~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NPS--DTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-STT--CCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CCC--CCCceeEEEEEEEEc
Confidence 6 899999999999883 22333456776542 111 124578999999875
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=160.25 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=96.2
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC---ccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~---~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
+....+.|+|+|++|+||+.+|.+|.+||||++++.+ +....+||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 5567799999999999999999999999999999986 333457999999999999999999998642 25689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCC-CCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~l~ 369 (471)
|||+|.+++|++||++.++|.++.. +.....|++|.
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999999999999999999963 55667888764
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=158.27 Aligned_cols=126 Identities=18% Similarity=0.249 Sum_probs=102.6
Q ss_pred cCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
....+.|+|+|++|++|+..+..+.+||||++++++ ..++|+++++|+||+|||+|.|.+.. .+.|.|+|||+|.
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~---~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~ 106 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQT 106 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCS
T ss_pred cCCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC---EEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCC
Confidence 345789999999999999444445599999999987 34599999999999999999999853 6799999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC-----ceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 340 VGGHDRLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
+++|++||++.++|.++..+. ....|++|... ....+..|+|++.++|++.
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-----~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEEC
T ss_pred CCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-----CCCCcccEEEEEEEeeeec
Confidence 999999999999999986432 12567777553 1134678999999999985
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=153.52 Aligned_cols=112 Identities=33% Similarity=0.430 Sum_probs=99.6
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d 336 (471)
+....+.|+|+|++|++|+..|..+.+||||++++.+.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 4567899999999999999999999999999999976554567999999999999999999998633 35799999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
++.+++|++||++.++|.++..+.....|++|.+
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 9999999999999999999998888889998753
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-19 Score=153.99 Aligned_cols=112 Identities=38% Similarity=0.548 Sum_probs=98.5
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~v~ 335 (471)
+....+.|+|+|++|++|+.+|..|.+||||++++.++....++|+++++++||.|||+|.|.+.. .....|.|+||
T Consensus 21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 100 (141)
T 2d8k_A 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100 (141)
T ss_dssp ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence 455679999999999999999999999999999997654456799999999999999999998532 23578999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|++.+++|++||++.++|.++..+.....|++|..
T Consensus 101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 99999999999999999999998888889999865
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-19 Score=154.45 Aligned_cols=112 Identities=33% Similarity=0.430 Sum_probs=99.2
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d 336 (471)
+....+.|+|+|++|+||+..|..+.+||||++++.+.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 5567799999999999999999999999999999976544567999999999999999999988642 35789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
++.+++|++||++.++|.++..+.....|++|..
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9999999999999999999988888889998853
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=149.88 Aligned_cols=111 Identities=24% Similarity=0.288 Sum_probs=96.0
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEE-eecC--CCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~-v~~~--~~~~L~v~ 333 (471)
.....|.|+|+|++|+||+. +..|.+||||++++.+. ....++|+++++|+||+|||+|.|. +... ....|.|+
T Consensus 15 ~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~ 93 (134)
T 2b3r_A 15 VSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS 93 (134)
T ss_dssp EEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred EeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence 44467999999999999997 77899999999999543 3445799999999999999999999 7532 45799999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||++.+++|++||++.++|.++..+.....|++|..
T Consensus 94 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 94 VLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 9999999999999999999999998888889998854
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=148.31 Aligned_cols=112 Identities=25% Similarity=0.377 Sum_probs=95.1
Q ss_pred ccCCceEEEEEEEEccccccCccC-CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEE-eecC--CCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~--~~~~L~v~v 334 (471)
+....+.|+|+|++|++|+.+|.. +.+||||++++.+.....++|+++++++||+|||+|.|. +... ....|.|+|
T Consensus 17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 455679999999999999999985 899999999998654456799999999999999999996 5432 246899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLK 370 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~l~~ 370 (471)
||+|.+++|++||++.++|.++..+.. ...|++|.+
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 999999999999999999999987644 356677754
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=146.90 Aligned_cols=109 Identities=22% Similarity=0.208 Sum_probs=93.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc-cccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVF 335 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v~ 335 (471)
+....+.|+|+|++|++ +|..|.+||||++++.+. ....++|+++++|+||.|||+|.|.+.... ...|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T 1wfm_A 21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence 55677999999999993 677899999999999642 333568999999999999999999986432 568999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|+|.+++|++||++.++|.++..+.....|++|..
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 99999999999999999999986667788998865
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=148.17 Aligned_cols=112 Identities=30% Similarity=0.446 Sum_probs=97.0
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEE-eecC--CCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~-v~~~--~~~~L~v~ 333 (471)
+....+.|+|+|++|++|+..+..|.+||||++++.+. ....++|+++++++||.|||+|.|. +... ....|.|+
T Consensus 24 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp EEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 44577999999999999999998999999999999763 2345799999999999999999998 5421 13689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||++.+++|++||++.++|.++..+.....|++|..
T Consensus 104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 104 VCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred EEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 9999999999999999999999998888889988753
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=145.31 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=88.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~ 333 (471)
+....|.|+|+|++|+||+.+|..|.+||||++++.+.. ...++|+++++|+||.|||+|.|.+.. .....|.|+
T Consensus 13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 555679999999999999999999999999999995432 345799999999999999999999532 235799999
Q ss_pred EEEcCCCCC--CCeeEEEEEECcccCCCCceEEEEec
Q 012089 334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 334 v~d~d~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|||++..++ |++||++.++|.++..+. ...|++|
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 999999887 999999999999987654 6677775
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=150.94 Aligned_cols=113 Identities=24% Similarity=0.342 Sum_probs=98.0
Q ss_pred ccCCceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~ 333 (471)
+....|.|+|+|++|+||+.+| ..|.+||||++++.+.. ...++|+++++|+||.|||+|.|.+.... ...|.|+
T Consensus 18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 5566899999999999999988 57999999999997653 23679999999999999999999987542 4579999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~ 371 (471)
|||+|.+++|++||++.++|.++..+.....|++|...
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 99999999999999999999999877677889998653
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=150.81 Aligned_cols=112 Identities=27% Similarity=0.360 Sum_probs=94.9
Q ss_pred ccCCceEEEEEEEEccccccC-cc------CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCe
Q 012089 259 IKKPVGILHVKVVRASKLLKK-DF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQI 329 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~-d~------~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~ 329 (471)
+....|.|+|+|++|++|+.. |. .+.+||||++++.+.....++|+++++++||+|||+|.|.+... ....
T Consensus 21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 100 (147)
T 2enp_A 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT 100 (147)
T ss_dssp EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence 556789999999999999984 43 35899999999986544567999999999999999999998642 2458
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 330 L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|.|+|||++.+++|++||++.++|.++........|+.|.+
T Consensus 101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 99999999999999999999999999987766677887754
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=148.24 Aligned_cols=111 Identities=29% Similarity=0.306 Sum_probs=93.8
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
+....+.|+|+|++|++|+.+|..| +||||++++.+.. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 97 (142)
T 2dmg_A 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV 97 (142)
T ss_dssp EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence 4556799999999999999999888 9999999996543 2567999999999999999999998532 245899999
Q ss_pred EEcCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 335 FDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 335 ~d~d~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
||++.++. |++||++.++|.++..+.....|++|..
T Consensus 98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~ 135 (142)
T 2dmg_A 98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135 (142)
T ss_dssp EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred EECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence 99998763 5799999999999987767777888765
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=146.20 Aligned_cols=107 Identities=35% Similarity=0.501 Sum_probs=93.6
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK 339 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~d~ 339 (471)
.|.|+|+|++|++|+..|..+.+||||++++.+.. ...++|+++++++||.|||+|.|.+.... ...|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 58899999999999999999999999999998632 34579999999999999999999987532 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
+++|++||++.++|.++..+ ....|++|..
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 99999999999999999876 4678888854
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-17 Score=169.44 Aligned_cols=177 Identities=22% Similarity=0.311 Sum_probs=135.0
Q ss_pred eeEEEEEcCCCceE-EEEEEEeCCCccc-cchhhHHHHHHHHHhhhccccc-----CCceee-eccC-------------
Q 012089 195 FATMVVSLMERPHV-DFGIKILGGDIMS-IPGLYQFIQKCITKYVAGIYIW-----PQTYEI-PILD------------- 253 (471)
Q Consensus 195 ~~~~~~sf~~~P~i-d~~~~~~g~~i~~-~P~l~~~i~~~i~~~l~~~~v~-----P~~~~i-~l~~------------- 253 (471)
+..|.=|+...|.+ ++.+.|+ .++.. .+.....++.++.+++.+.-.+ |-.-.. ++..
T Consensus 304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t 382 (540)
T 3nsj_A 304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVT 382 (540)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTB
T ss_pred HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCc
Confidence 45566666777855 9999998 45543 4667788999999999887666 421111 2211
Q ss_pred -cccccccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec-CCCCeEE
Q 012089 254 -ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PESQILQ 331 (471)
Q Consensus 254 -~~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~~L~ 331 (471)
...+......|.|+|+|++|++|+. |.+|++||||+++++++. ++|+++++++||+|||+|.|.+.. ...+.|+
T Consensus 383 ~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~ 458 (540)
T 3nsj_A 383 NQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLR 458 (540)
T ss_dssp CGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEE
T ss_pred ccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEE
Confidence 1112345568999999999999998 999999999999998653 699999999999999999998653 3578899
Q ss_pred EEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 332 v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
|+|||+|..++||+||++.++|.. + ..+.|+.+ ..|+|+++++..
T Consensus 459 ~~V~D~D~~~~dD~LG~~~~~L~~---g-~~~~~~~l-------------~~G~l~~~~~~~ 503 (540)
T 3nsj_A 459 VQVWDADYGWDDDLLGSCDRSPHS---G-FHEVTCEL-------------NHGRVKFSYHAK 503 (540)
T ss_dssp EEEEECCSSSCCEEEEEEEECCCS---E-EEEEEEEC-------------SSSEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEeeC---C-cEEEEEEc-------------CCeEEEEEEEEE
Confidence 999999999999999999999882 2 35566653 258888887744
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=149.09 Aligned_cols=108 Identities=28% Similarity=0.432 Sum_probs=93.7
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc-----------cceeeeeecCCCCCeEeeEEEEE-eec--CCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLV-VKE--PESQ 328 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~-----------~~~kT~v~~~t~nP~wne~f~f~-v~~--~~~~ 328 (471)
.|.|+|+|++|++|+.+|..|.+||||++++.+... ..++|+++++|+||.|||+|.|. +.. ....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 589999999999999999999999999999987531 24689999999999999999997 542 2457
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 329 ~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
.|.|+|||+|.+++|++||++.++|.++..+.....|++|..
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 999999999999999999999999999987666778888854
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-18 Score=146.27 Aligned_cols=111 Identities=23% Similarity=0.339 Sum_probs=94.3
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~ 333 (471)
+....+.|+|+|++|++|+.+|..|.+||||++++.+.. ...++|+++++|+||+|||+|.|.+.. .....|.|+
T Consensus 16 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 95 (141)
T 1v27_A 16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 95 (141)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence 455679999999999999999999999999999995432 345699999999999999999998532 235799999
Q ss_pred EEEcCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||++.+++ |++||++.++|.++..+. ...|++|..
T Consensus 96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 96 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred EEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 999999887 999999999999987654 778888865
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-18 Score=150.45 Aligned_cols=109 Identities=26% Similarity=0.354 Sum_probs=95.0
Q ss_pred CceEEEEEEEEccccccCcc-CCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 012089 262 PVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~-~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~-d~ 337 (471)
..|.|+|+|++|++|+.+|. .|.+||||++++.++. ...++|+++++|+||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 57999999999999999985 7999999999997542 235689999999999999999999854 4689999999 99
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~ 371 (471)
|.+++|++||++.++|.++..+.....|++|...
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9999999999999999999987788899998654
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=145.36 Aligned_cols=112 Identities=26% Similarity=0.362 Sum_probs=94.7
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC-CCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~v~v 334 (471)
.+....|.|+|+|++|++|+..| .|.+||||++++.+. ....++|+++++|+||.|||+|.|.+... ....|.|+|
T Consensus 21 ~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V 99 (153)
T 3fbk_A 21 SIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV 99 (153)
T ss_dssp EEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEE
T ss_pred EEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEE
Confidence 35667899999999999999998 699999999999653 23457999999999999999999998422 235699999
Q ss_pred EEcCCCCC-CCeeEEEEEECcccCC-CCceEEEEeccc
Q 012089 335 FDWDKVGG-HDRLGMQLVPLKLLTP-HETKEFTLDLLK 370 (471)
Q Consensus 335 ~d~d~~~~-d~~lG~~~i~L~~l~~-~~~~~~~~~l~~ 370 (471)
||++.+++ |++||++.++|.++.. +.....|++|..
T Consensus 100 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 100 WNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp EECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred EeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 99998877 9999999999999984 677788998865
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=143.81 Aligned_cols=112 Identities=35% Similarity=0.475 Sum_probs=93.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v 334 (471)
+....|.|+|+|++|+||+..|..|.+||||++++.+. ....++|+++++|+||.|||+|.|.+.... ...|.|+|
T Consensus 20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 99 (159)
T 1tjx_A 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (159)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence 55678999999999999999999999999999999743 234578999999999999999999986432 46799999
Q ss_pred EEcCCCCCCCeeEEEEEECccc------------CCCCceEEEEeccc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLL------------TPHETKEFTLDLLK 370 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l------------~~~~~~~~~~~l~~ 370 (471)
||++.+++|++||++.+++..+ .++.....|++|..
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 9999999999999999999853 23445567777654
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=141.20 Aligned_cols=99 Identities=32% Similarity=0.460 Sum_probs=86.2
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v 334 (471)
+....|.|+|+|++|++|+..|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 45567999999999999999999999999999999754 234568999999999999999999986533 36899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~ 357 (471)
||++.+++|++||++.++|.++.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 91 MDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EECCSSSCCEEEEEEEESSSSCH
T ss_pred EECCCCCCCcEEEEEEEccccCC
Confidence 99999999999999999998753
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-17 Score=143.16 Aligned_cols=99 Identities=33% Similarity=0.442 Sum_probs=86.9
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|+|+|++|++|+.+|..|.+||||++++.+.. ...++|+++++|+||+|||+|.|.+... ....|.|+
T Consensus 31 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~ 110 (166)
T 2cm5_A 31 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS 110 (166)
T ss_dssp EEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred EEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEE
Confidence 3556789999999999999999999999999999998642 3467999999999999999999998643 25689999
Q ss_pred EEEcCCCCCCCeeEEEEEECccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLL 356 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l 356 (471)
|||++.+++|++||++.++|.++
T Consensus 111 V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 111 VWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp EEECCSSSCCEEEEEEEEETTCC
T ss_pred EEECCCCCCCcEEEeEEEecccC
Confidence 99999999999999999999875
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=135.27 Aligned_cols=118 Identities=18% Similarity=0.259 Sum_probs=83.7
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeee-cCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (471)
+.|.|+|+|++|++++. .|.+||||+++ . +. .+|+++ .++.||.|||+|.|.+.+. ...|.|+|||+| +
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~ 72 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L 72 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence 46999999999998853 58899999999 2 22 245444 4799999999999999864 457999999999 8
Q ss_pred CCCCeeEEEEEECcccCCCC--ceEEEEecccccCCCCCCCCccc-------eEEEEEEEE
Q 012089 341 GGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQR-------GKIVVELTY 392 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~-------G~l~l~l~y 392 (471)
++|++||++.++|.++.... ....|.++...... .+++.. +.+.++++|
T Consensus 73 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~---~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 73 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM---ADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-------------CCSCCCCCEEEEEEEE
T ss_pred CCCCeEEEEEEEHHHhhhcCCCCccccEEccccccc---CCCcCcceECCCccEEEEEEEe
Confidence 89999999999999986432 11244444332110 112333 448887776
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-17 Score=141.58 Aligned_cols=97 Identities=29% Similarity=0.374 Sum_probs=79.7
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v 334 (471)
+....+.|+|+|++|++|+.+|..|.+||||++++.++ ....++|+++++|+||.|||+|.|.+.... ...|.|+|
T Consensus 25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V 104 (153)
T 1w15_A 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 104 (153)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence 55567999999999999999998999999999999543 223569999999999999999999987543 46899999
Q ss_pred EEcCCCCCCCeeEEEEEECcc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKL 355 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~ 355 (471)
||++.+++|++||++.+++.+
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC
T ss_pred EeCCCCCCCcEEEEEEECCCC
Confidence 999999999999999999988
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=133.33 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=100.5
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE--SQILQLQVFDWDK 339 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~--~~~L~v~v~d~d~ 339 (471)
.-.|+|+|.+|.||+ |++|||+++.+.+.+ ++|++++ ++.||.|||.|.|++..+. +..|.+.|||+++
T Consensus 20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp CEEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred cEEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 356999999999998 578999999997654 4999998 6999999999999998543 6799999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
+++|++||++.++|.++..+.....+..|... .+....++|.++++|.|.
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD------NNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSEEEEEEEEECT------TSCEEEEEEEEEEEEEET
T ss_pred ccCCCEEEEEEEEhHHhccCCeEEEeecccCC------CCCccccEEEEEEEecCC
Confidence 99999999999999999887766666666442 234455899999999994
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=164.97 Aligned_cols=121 Identities=26% Similarity=0.417 Sum_probs=103.1
Q ss_pred cCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
....|.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|+||.|||+|.|.+..+....|+|+|||+|.
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 34679999999999999999999999999999997654 599999999999999999999987777889999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCc----eEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 340 VGGHDRLGMQLVPLKLLTPHET----KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
+++|++||++.++|.++..+.. ...|+++. +...|+|++++.+.
T Consensus 460 ~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEEEE
T ss_pred CCCCCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEEEE
Confidence 9999999999999999876433 45677653 34679999888764
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=133.64 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
.+.+.|+|+|++|++++ ..|.+||||+++ . +. .+|++++ ++.||.|||+|.|.+.+. ...|.|+|||+|
T Consensus 11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 80 (167)
T 2cjs_A 11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 80 (167)
T ss_dssp SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence 35789999999999884 268899999999 2 22 3565554 699999999999999864 457999999999
Q ss_pred CCCCCeeEEEEEECcccCCC
Q 012089 340 VGGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~ 359 (471)
+++|++||++.++|.++...
T Consensus 81 ~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 81 LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp SSCCEEEEEEEEEGGGSCBC
T ss_pred CCCCceEEEEEEEHHHhccc
Confidence 88999999999999998643
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=161.60 Aligned_cols=109 Identities=28% Similarity=0.453 Sum_probs=98.7
Q ss_pred CCceEEEEEEEEcccccc---CccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 261 KPVGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~---~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
.+.|.|+|+|++|++|+. +|..|.+||||++++.+.....++|+++++++||+|||+|.|.+.....+.|+|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 567999999999999998 88889999999999997655567999999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|.++ |++||++.++|.++..+.....|++|..
T Consensus 95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~ 126 (749)
T 1cjy_A 95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ 126 (749)
T ss_dssp CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred CCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence 9998 9999999999999988877788888743
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=137.52 Aligned_cols=110 Identities=35% Similarity=0.492 Sum_probs=90.9
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEEEE
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFD 336 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v~d 336 (471)
...|.|+|+|++|++|+.+|..|.+||||++++.+ .....++|+++++|+||.|||+|.|.+.... ...|.|+|||
T Consensus 147 p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 226 (284)
T 2r83_A 147 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 226 (284)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence 45689999999999999999999999999999964 2334568999999999999999999987543 4579999999
Q ss_pred cCCCCCCCeeEEEEEECccc------------CCCCceEEEEeccc
Q 012089 337 WDKVGGHDRLGMQLVPLKLL------------TPHETKEFTLDLLK 370 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l------------~~~~~~~~~~~l~~ 370 (471)
++.+++|++||++.+++..+ .++.....|+.|..
T Consensus 227 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 227 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred CCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 99999999999999999763 23344566777644
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-14 Score=150.21 Aligned_cols=124 Identities=23% Similarity=0.389 Sum_probs=100.6
Q ss_pred CceEEEEEEEEccccccCcc--CCCCCcEEEEEEcCc--cccceeeeeecCC-CCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 262 PVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~--~g~~DPyv~v~l~~~--~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
..+.|+|+|++|++|+..+. .+.+||||++.+.+. ....++|++++++ +||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 57899999999999999874 689999999999653 2235689999987 999999999999987666789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
+|.+++|++||++.+||.++..+. .+++|.... ...-..|.|.+.++|.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~-----g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKN-----GDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTT-----SCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCC-----cCCCCceEEEEEEEEE
Confidence 999999999999999999998753 356664320 0112468888888874
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-14 Score=140.49 Aligned_cols=99 Identities=34% Similarity=0.519 Sum_probs=85.7
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v 334 (471)
+....|.|+|+|++|++|+.+|..|.+||||++++.+ .....++|+++++++||.|||+|.|.+.... ...|.|+|
T Consensus 147 y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 226 (296)
T 1dqv_A 147 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 226 (296)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred eccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEE
Confidence 3345799999999999999999999999999999973 3345679999999999999999999886432 45799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~ 357 (471)
||++.+++|++||++.+++.++.
T Consensus 227 ~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 227 VDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp EECCSSSCCEEEEECCCSSCTTC
T ss_pred EeCCCCCCCceEEEEEECCccCC
Confidence 99999999999999999998764
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-14 Score=150.30 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCC---CCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN---LNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t---~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
...|.|+|+|++|++|+++| ||||++++++... .||+++++| +||.|||+|.|.+... ...|.++|||+
T Consensus 8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~ 79 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD 79 (483)
T ss_dssp EEEECC----------------------------------------------------CCEECC----------------
T ss_pred eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence 34688999999999999876 9999999986533 489999999 9999999999986543 57899999994
Q ss_pred -C---CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCC-----------------CCCCCccceEEEEEEEEEecc
Q 012089 338 -D---KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS-----------------DPKDMKQRGKIVVELTYVPFK 396 (471)
Q Consensus 338 -d---~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~G~l~l~l~y~p~~ 396 (471)
| ..++|++||++.+++.++..+...+.|++|....... .....+..|.|+++++|.+..
T Consensus 80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 80 SDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp ---------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred CCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence 4 3678999999999999999877778888885422100 001123569999999998743
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-12 Score=136.04 Aligned_cols=108 Identities=34% Similarity=0.506 Sum_probs=92.5
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~d 338 (471)
..+.|+|++++|++|..+|.+|.+||||++++.+. ...+++|+++++|+||.|||+|.|.+.... ...|.++|||+|
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 35889999999999999999999999999999543 234568999999999999999999987543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
..++|++||++.+++.++.... ...|+.+..
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccccccccccccchhhhccCC-cccceeecc
Confidence 9999999999999999987654 467777654
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.9e-11 Score=128.18 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=90.7
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCc---cccceeeeeecC-CCCCeEee-EEEEE-eecCCCCeEEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKK-NLNPEWNE-NFKLV-VKEPESQILQLQVFD 336 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~---~~~~~kT~v~~~-t~nP~wne-~f~f~-v~~~~~~~L~v~v~d 336 (471)
...|+|+|++|++|+.. .+||||+|.+.+. ...+++|+++++ ++||+||| +|.|. +..++...|+|+|||
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D 799 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence 34799999999999853 6899999999752 122358998875 59999999 69998 766666789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccC
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (471)
+| |++||++.+||..|..+-. .++|... ....-..|.|.+.+.+..+..
T Consensus 800 ~d----ddfiG~~~lpL~~L~~GyR---~vpL~~~-----~g~~l~~atLfv~i~~~~~~~ 848 (885)
T 3ohm_B 800 EG----GKFVGHRILPVSAIRSGYH---YVCLRNE-----ANQPLCLPALLIYTEASDYIP 848 (885)
T ss_dssp TT----TEEEEEEEEETTTCCCEEE---EEEEECT-----TSCEEEEEEEEEEEEEEECCC
T ss_pred CC----ccEEeeEEEEHHHcCCCce---EEEecCC-----CCCccCceEEEEEEEEEecCC
Confidence 87 7899999999999987632 3444331 111225789999999886543
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=127.07 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=87.0
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCc---cccceeee-eec-CCCCCeEee-EEEE-EeecCCCCeEEEEE
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTT-VKK-KNLNPEWNE-NFKL-VVKEPESQILQLQV 334 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~---~~~~~kT~-v~~-~t~nP~wne-~f~f-~v~~~~~~~L~v~v 334 (471)
..|.|+|+|++|++|+. +.+||||++.+.+. ...+++|+ +++ +++||+||| +|.| .+..++...|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 36799999999999985 46899999999642 22346898 776 569999999 7999 78766666899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
||++ +++||++.+||..|..+. .+++|.... ...-..+.|.+.+.+
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~~~-----g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNSGY---HHLCLHSES-----NMPLTMPALFIFLEM 797 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCCEE---EEEEEECTT-----CCEEEEEEEEEEEEE
T ss_pred EEeC----CCccceEeeehhhcCCCc---EEEeccCCC-----CCCCCceEEEEEEEE
Confidence 9996 789999999999998653 345553310 011235777787766
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=124.59 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=89.7
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc----cceeeeeecC-CCCCeEeeE-EEEE-eecCCCCeEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----PWKKTTVKKK-NLNPEWNEN-FKLV-VKEPESQILQLQVF 335 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~----~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~~~~L~v~v~ 335 (471)
.+.|+|+|++|++|+.. .+||||++.+.+... .+++|+++++ ++||+|||+ |.|. +..++...|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999853 689999999976321 3458998875 699999998 9998 76666678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (471)
|++ +++||++.+||..|..+- ..++|... ....-..++|.+.+.+....
T Consensus 725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~-----~g~~~~~atLfv~i~~~~~~ 773 (816)
T 3qr0_A 725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNE-----SNRPLGLASVFAHIVAKDYV 773 (816)
T ss_dssp ETT----SCEEEEEEEESTTCCCEE---EEEEEECT-----TSCEEEEEEEEEEEEEEECC
T ss_pred ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCC-----CCCCCCceEEEEEEEEEecC
Confidence 985 789999999999998763 23455332 11122347888888877543
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-09 Score=87.76 Aligned_cols=111 Identities=20% Similarity=0.358 Sum_probs=85.3
Q ss_pred ceEEEEEEEEcc--ccccCccCCCCCcEEEEEEcCcccc-ceee-eeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 012089 263 VGILHVKVVRAS--KLLKKDFLGTSDPYVKLSLTGEKLP-WKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (471)
Q Consensus 263 ~G~L~V~v~~a~--~L~~~d~~g~~DPyv~v~l~~~~~~-~~kT-~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d 338 (471)
.+.|+|.+.++. .|++ .....||||.+.+...... ..+| ..+++|.+|.|||+|.-.+.+ ++.|.+.|++..
T Consensus 5 ~~flRi~~~~~~~~~~~~--~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 80 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQA--EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA 80 (126)
T ss_dssp CCEEEEEEEEEECSSCCC--SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEET
T ss_pred CccEEeeeccccccccCC--ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCC
Confidence 356888876654 3332 2246899999999754322 3355 778899999999999999875 578999999665
Q ss_pred CCCCCCeeEEEEEECcccC-----CCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 339 KVGGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
. +++..|.+++++|. .+...+.|++| ++.|+|++.+.|+
T Consensus 81 ~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 81 E----EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF 124 (126)
T ss_dssp T----EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence 3 89999999999998 34556899887 4589999999987
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-09 Score=87.68 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=87.1
Q ss_pred CceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccc-cceee-eeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 012089 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL-PWKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~-~~~kT-~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d 338 (471)
..+.|+|.+.++.--+-.. .....||||.+.+..... ...+| ..+++|..|+|||+|.-.+.+ .+.|.|.|++..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 85 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN 85 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence 3467888886655322211 123589999999975432 23577 778889999999999988875 578999999554
Q ss_pred CCCCCCeeEEEEEECcccC-----CCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 339 KVGGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
. +++..|.+++.+|. .+...+.|++| ++.|+|++.+.|.-
T Consensus 86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~~ 130 (138)
T 2enj_A 86 V----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYFL 130 (138)
T ss_dssp C----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEECC
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEEE
Confidence 3 89999999999998 44566899987 45899999999963
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.5e-09 Score=88.87 Aligned_cols=60 Identities=30% Similarity=0.350 Sum_probs=51.2
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC----------CCCCc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----------NHNNP 449 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~----------~~~dp 449 (471)
....|+|++++.|.| ..+.|.|+|++|+||+.. +.+||
T Consensus 9 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dp 56 (147)
T 2enp_A 9 KYQLGMLHFSTQYDL--------------------------------LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNP 56 (147)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCC
T ss_pred CCcceEEEEEEEEcC--------------------------------CCCEEEEEEEEEeCCCCccccccccccCCCCCc
Confidence 567899999999987 568999999999999973 47999
Q ss_pred EEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 450 YAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 450 yv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
||++++.. .++||+ +|.||+||
T Consensus 57 yv~v~l~~~~~~~~kT~v~~~t~nP~wn 84 (147)
T 2enp_A 57 YVKICLLPDQKNSKQTGVKRKTQKPVFE 84 (147)
T ss_dssp EEEEEEETCCSSCEECCCCCSCSSCCCC
T ss_pred EEEEEEEeCCCcceEeecccCCCCCeEe
Confidence 99999974 344776 89999998
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-09 Score=89.65 Aligned_cols=60 Identities=28% Similarity=0.430 Sum_probs=50.8
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~ 456 (471)
+...|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 4 ~~~~G~i~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 51 (141)
T 1v27_A 4 GSSGGQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFL 51 (141)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCS
T ss_pred CCcccEEEEEEEEeC--------------------------------CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEe
Confidence 567899999999987 468999999999999873 579999999983
Q ss_pred -----CeeeeeC---CCCCCcCC
Q 012089 457 -----GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 -----~~~~kTk---~t~nP~Wn 471 (471)
..++||+ +|.||+||
T Consensus 52 ~~~~~~~~~kT~~~~~t~nP~wn 74 (141)
T 1v27_A 52 PDRSDKNKRRTKTVKKTLEPKWN 74 (141)
T ss_dssp SCCSSSSCCBCCCCSSCSSCCCC
T ss_pred cCCCCCcceeCccccCCCCCccc
Confidence 3344776 99999998
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.1e-09 Score=87.85 Aligned_cols=58 Identities=29% Similarity=0.459 Sum_probs=49.4
Q ss_pred cceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEc--
Q 012089 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK-- 456 (471)
Q Consensus 382 ~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~-- 456 (471)
..|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 3 ~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~ 50 (129)
T 2bwq_A 3 LSGQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD 50 (129)
T ss_dssp CCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS
T ss_pred eeEEEEEEEEEcc--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecC
Confidence 4799999999987 468999999999999873 579999999993
Q ss_pred ---CeeeeeC---CCCCCcCC
Q 012089 457 ---GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ---~~~~kTk---~t~nP~Wn 471 (471)
..++||+ +|.||+||
T Consensus 51 ~~~~~~~kT~v~~~t~nP~wn 71 (129)
T 2bwq_A 51 RSDKNKRRTKTVKKTLEPKWN 71 (129)
T ss_dssp CSGGGEEECCCCSSBSSCEEE
T ss_pred CCCCcceecccccCCCCCccc
Confidence 3445777 89999997
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=87.07 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=50.7
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~ 456 (471)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 9 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 56 (141)
T 2d8k_A 9 RENLGRIQFSVGYNF--------------------------------QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL 56 (141)
T ss_dssp CCCCCEEEEEEEECS--------------------------------SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEE
T ss_pred CceeeEEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEE
Confidence 456899999999986 467999999999999973 579999999995
Q ss_pred C---eeeeeC---CCCCCcCC
Q 012089 457 G---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~---~~~kTk---~t~nP~Wn 471 (471)
+ .+.||+ +|.||+||
T Consensus 57 ~~~~~~~kT~v~~~t~nP~wn 77 (141)
T 2d8k_A 57 PDKKHKLETKVKRKNLNPHWN 77 (141)
T ss_dssp SCCSSEEECCCCTTCSSCCCC
T ss_pred CCCCccEeCceEcCCCCCccc
Confidence 3 344777 89999998
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.8e-09 Score=88.47 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=50.6
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 12 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~ 59 (142)
T 2chd_A 12 ATTLGALEFSLLYDQ--------------------------------DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL 59 (142)
T ss_dssp --CCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEE
T ss_pred CCccceEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEE
Confidence 456899999999987 57899999999999997 3579999999997
Q ss_pred C-----eeeeeC---CCCCCcCC
Q 012089 457 G-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~-----~~~kTk---~t~nP~Wn 471 (471)
+ .++||+ +|.||+||
T Consensus 60 ~~~~~~~~~kT~v~~~t~nP~wn 82 (142)
T 2chd_A 60 PGASKSNKLRTKTLRNTRNPVWN 82 (142)
T ss_dssp SCCSGGGEEECCCCCSCSSCEEE
T ss_pred cCCCCcceeeCCcCCCCCCCcCc
Confidence 5 445777 89999997
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.7e-09 Score=90.07 Aligned_cols=60 Identities=30% Similarity=0.526 Sum_probs=50.8
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~ 456 (471)
....|+|++++.|.| ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 8 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~ 55 (159)
T 1tjx_A 8 LEKLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 55 (159)
T ss_dssp GGCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred cCcCCeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEE
Confidence 457899999999987 468999999999999973 579999999996
Q ss_pred C-----eeeeeC---CCCCCcCC
Q 012089 457 G-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~-----~~~kTk---~t~nP~Wn 471 (471)
+ .++||+ +|+||+||
T Consensus 56 ~~~~~~~~~kT~v~~~t~nP~wn 78 (159)
T 1tjx_A 56 QNGKRLKKKKTTIKKNTLNPYYN 78 (159)
T ss_dssp ETTEEEEEEECCCCCSCSSCEEE
T ss_pred eCCceeceeeCceecCCCCCccc
Confidence 3 234776 89999997
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=87.25 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=51.2
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~----~~~dpyv~v~~ 455 (471)
....|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++
T Consensus 5 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~ 52 (138)
T 1ugk_A 5 SSGLGTLFFSLEYNF--------------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI 52 (138)
T ss_dssp CCCCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEE
T ss_pred CCccEEEEEEEEEEC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEE
Confidence 456899999999987 468999999999999972 57999999999
Q ss_pred cC---eeeeeC---CCCCCcCC
Q 012089 456 KG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 456 ~~---~~~kTk---~t~nP~Wn 471 (471)
.+ ++.||+ +|.||+||
T Consensus 53 ~~~~~~~~kT~v~~~t~nP~wn 74 (138)
T 1ugk_A 53 LPEKKHKVKTRVLRKTLDPAFD 74 (138)
T ss_dssp ETTTCSEEECCCCSSCSSCEEE
T ss_pred ecCCCceEecCcCcCCCCCcEe
Confidence 64 445777 99999997
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=89.78 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=51.6
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 20 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~ 67 (166)
T 2cm5_A 20 IEERGKILVSLMYST--------------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK 67 (166)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred cCccceEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEE
Confidence 457899999999987 46899999999999987 3679999999998
Q ss_pred C-----eeeeeC---CCCCCcCC
Q 012089 457 G-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~-----~~~kTk---~t~nP~Wn 471 (471)
+ .++||+ +|+||+||
T Consensus 68 ~~~~~~~~~kT~v~~~t~nP~wn 90 (166)
T 2cm5_A 68 PDMGKKAKHKTQIKKKTLNPEFN 90 (166)
T ss_dssp TC---CCEEECCCCCSCSSCEEE
T ss_pred CCCCccceEeCCcccCCCCCccc
Confidence 6 344777 99999997
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=87.01 Aligned_cols=59 Identities=17% Similarity=0.350 Sum_probs=49.9
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|++++.|.+ ..+.|.|+|++|+||+. .+ +||||++++.
T Consensus 7 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~ 53 (142)
T 2dmg_A 7 GSPLGQIQLTIRHSS--------------------------------QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLL 53 (142)
T ss_dssp SCSSCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEE
T ss_pred CCCcceEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEE
Confidence 466899999999987 46899999999999996 35 9999999995
Q ss_pred C-----eeeeeC---CCCCCcCC
Q 012089 457 G-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~-----~~~kTk---~t~nP~Wn 471 (471)
. .++||+ +|+||+||
T Consensus 54 ~~~~~~~~~kT~v~~~t~nP~wn 76 (142)
T 2dmg_A 54 PDKRRSGRRKTHVSKKTLNPVFD 76 (142)
T ss_dssp SCCCSSSCEECCCCCSCSSCEEE
T ss_pred cCCCCCCcccCCccCCCCCCCcC
Confidence 3 334776 89999997
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.7e-09 Score=90.81 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=50.5
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|++++.|.+ ..+.|.|.|++|+||+. .+.+||||++++.
T Consensus 26 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~ 73 (155)
T 2z0u_A 26 AVGATRIQIALKYDE--------------------------------KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVL 73 (155)
T ss_dssp --CCEEEEEEEEEET--------------------------------TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEE
T ss_pred cCCcEEEEEEEEEcC--------------------------------CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEe
Confidence 356799999999987 46899999999999986 4689999999997
Q ss_pred C---e---eeeeC---CCCCCcCC
Q 012089 457 G---D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~---~---~~kTk---~t~nP~Wn 471 (471)
+ + ++||+ +|+||+||
T Consensus 74 ~~~~~~~~~~kT~v~~~tlnP~wn 97 (155)
T 2z0u_A 74 PCSESTTCLFRTRPLDASDTLVFN 97 (155)
T ss_dssp SCSCHHHHEEECCCEECCSSEEEE
T ss_pred cCCCCCccceeCCcCCCCCCCccc
Confidence 6 3 45787 99999997
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=87.04 Aligned_cols=57 Identities=26% Similarity=0.493 Sum_probs=49.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
+|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~ 49 (138)
T 3n5a_A 2 RGELLLSLCYNP--------------------------------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKD 49 (138)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETT
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCC
Confidence 699999999987 56899999999999987 357999999999742
Q ss_pred ----eeeeC---CCCCCcCC
Q 012089 459 ----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ----~~kTk---~t~nP~Wn 471 (471)
++||+ +|.||+||
T Consensus 50 ~~~~~~kT~~~~~t~nP~wn 69 (138)
T 3n5a_A 50 KRVEKKKTVTKKRNLNPIFN 69 (138)
T ss_dssp EEEEEEECCCCSSCSSCEEE
T ss_pred CccceEeCccccCCCCCcCc
Confidence 34776 88999997
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-08 Score=88.63 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC--CCCCcEEEEEEc
Q 012089 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE--NHNNPYAIILYK 456 (471)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~--~~~dpyv~v~~~ 456 (471)
.....|++.++++|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 9 ~~~~~G~~~lsL~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~ 56 (153)
T 3fbk_A 9 SHKVQGAGQLRLSIDA--------------------------------QDRVLLLHIIEGKGLISKQPGTCDPYVKISLI 56 (153)
T ss_dssp ----CCCCEEEEEEEE--------------------------------SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEE
Confidence 3567899999999998 578999999999999873 689999999994
Q ss_pred C-----eeeeeC---CCCCCcCC
Q 012089 457 G-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~-----~~~kTk---~t~nP~Wn 471 (471)
. .+.||+ +|+||+||
T Consensus 57 ~~~~~~~~~kT~v~~~t~nP~wn 79 (153)
T 3fbk_A 57 PEDSRLRHQKTQTVPDCRDPAFH 79 (153)
T ss_dssp SCSCCTTCEECCCCTTCSSCEEE
T ss_pred cCCCCccEEeccccCCCCCCccc
Confidence 3 234776 89999997
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-08 Score=87.46 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=50.7
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~ 455 (471)
...+|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 6 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l 53 (148)
T 3fdw_A 6 IFVTGRIAFSLKYEQ--------------------------------QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYL 53 (148)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEE
T ss_pred CccceEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEE
Confidence 457899999999987 57899999999999985 367999999999
Q ss_pred cCe-----eeeeC---CCCCCcCC
Q 012089 456 KGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 456 ~~~-----~~kTk---~t~nP~Wn 471 (471)
... ++||+ +|+||+||
T Consensus 54 ~~~~~~~~~~kT~v~~~t~nP~wn 77 (148)
T 3fdw_A 54 LPDKSRQGKRKTSIKRDTVNPLYD 77 (148)
T ss_dssp ETCCSGGGEEECCCCSSCSSCEEE
T ss_pred EcCCcccCccccccCCCCCCCcEe
Confidence 732 44776 89999997
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-08 Score=84.56 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=50.5
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEcC--
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG-- 457 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~-- 457 (471)
....|+|++++.|.+ ..+.|.|+|++|++.+..+.+||||++++..
T Consensus 9 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~ 56 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDC--------------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRT 56 (138)
T ss_dssp CSSCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETT
T ss_pred CCcceEEEEEEEEeC--------------------------------CCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCC
Confidence 456899999999976 4689999999999877778999999999942
Q ss_pred e--eeeeC---CCCCCcCC
Q 012089 458 D--KKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~--~~kTk---~t~nP~Wn 471 (471)
. ++||+ +|+||+||
T Consensus 57 ~~~~~kT~v~~~tlnP~wn 75 (138)
T 1wfm_A 57 GSVEAQTALKKRQLHTTWE 75 (138)
T ss_dssp EEEEEECCCCCCCSSEECS
T ss_pred CcccEecccCcCCCCCcCC
Confidence 2 24776 99999998
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=87.29 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=50.2
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~ 456 (471)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 25 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~ 72 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72 (152)
T ss_dssp -CCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred CCCceEEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEE
Confidence 456899999999987 468999999999999973 579999999995
Q ss_pred C---eeeeeC---CCCCCcCC
Q 012089 457 G---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~---~~~kTk---~t~nP~Wn 471 (471)
. ++.||+ +|.||+||
T Consensus 73 ~~~~~~~kT~v~~~t~nP~wn 93 (152)
T 1rsy_A 73 PDKKKKFETKVHRKTLNPVFN 93 (152)
T ss_dssp TTCCSCEECCCCTTCSSCEEE
T ss_pred cCCCceEeccccCCCCCCcCc
Confidence 3 344777 88999997
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=85.53 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=50.6
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~ 456 (471)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 17 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~ 64 (143)
T 3f04_A 17 VEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64 (143)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEE
T ss_pred ccCeEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEE
Confidence 356899999999987 578999999999999973 589999999994
Q ss_pred ---CeeeeeC---CCCCCcCC
Q 012089 457 ---GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ---~~~~kTk---~t~nP~Wn 471 (471)
.++.||+ +|.||+||
T Consensus 65 ~~~~~~~kT~v~~~t~nP~wn 85 (143)
T 3f04_A 65 PDKKKKFETKVHRKTLNPVFN 85 (143)
T ss_dssp SCCSCCEECCCCCSCSSCEEE
T ss_pred CCCCccEECccCcCCCCCcCc
Confidence 3345777 89999997
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=86.77 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=47.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|.+++.|.| ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 13 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 60 (153)
T 1w15_A 13 PSGRGELLVSLCYQS--------------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY 60 (153)
T ss_dssp ---CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEE
T ss_pred CccccEEEEEEEEcC--------------------------------CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEE
Confidence 456899999999987 46899999999999996 3579999999994
Q ss_pred --Ce---eeeeC---CCCCCcCC
Q 012089 457 --GD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 457 --~~---~~kTk---~t~nP~Wn 471 (471)
+. ++||+ +|+||+||
T Consensus 61 ~~~~~~~~~kT~v~~~t~nP~wn 83 (153)
T 1w15_A 61 HAKKRISKKKTHVKKCTPNAVFN 83 (153)
T ss_dssp ETTEEEEEEECCCCCSCSSEEEE
T ss_pred eCCeEeceEecCcccCCCCCeec
Confidence 33 33776 89999997
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.1e-08 Score=84.20 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=48.6
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|++++.|. .|.|.|+|++|+||+. .+.+||||++++.
T Consensus 3 ~~~~G~i~~~l~y~----------------------------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~ 48 (142)
T 1rh8_A 3 HPITGEIQLQINYD----------------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLL 48 (142)
T ss_dssp CCCCCEEEEEEEEE----------------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEET
T ss_pred CCcceEEEEEEEEc----------------------------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEe
Confidence 34689999999994 3689999999999997 3679999999998
Q ss_pred Ce--------------eeeeC---CCCCCcCC
Q 012089 457 GD--------------KKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~~--------------~~kTk---~t~nP~Wn 471 (471)
+. +.||+ +|+||+||
T Consensus 49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn 80 (142)
T 1rh8_A 49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80 (142)
T ss_dssp TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEE
T ss_pred cCCCcccccccccccceeeccccCCCCCCCCC
Confidence 64 23676 89999997
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=81.31 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=47.5
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|++.+.|. .+.|.|+|++|+||+. .+.+||||++++.
T Consensus 16 ~~~~G~l~~~l~~~----------------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 61 (149)
T 1a25_A 16 MERRGRIYIQAHID----------------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLI 61 (149)
T ss_dssp -CTTCEEEEEEEES----------------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred CCcceEEEEEEEec----------------------------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEE
Confidence 34579999999872 3689999999999986 3579999999997
Q ss_pred C-----eeeeeC---CCCCCcCC
Q 012089 457 G-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~-----~~~kTk---~t~nP~Wn 471 (471)
+ .++||+ +|.||+||
T Consensus 62 ~~~~~~~~~kT~v~~~t~nP~wn 84 (149)
T 1a25_A 62 PDPKSESKQKTKTIKCSLNPEWN 84 (149)
T ss_dssp SCTTCSSCEECCCCSSCSSCEEE
T ss_pred CCCCCcceEecceeCCCCCCcCC
Confidence 4 344777 89999997
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=80.98 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=39.8
Q ss_pred CcceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 426 SGAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 426 ~~~g~L~V~v~~Ak~L~~~-------------~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
...|.|+|+|.+|+||+.. +.+||||++.+++++. ||+ +|+||+||
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WN 88 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccC
Confidence 3689999999999999852 4699999999998764 776 89999998
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-07 Score=77.65 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=41.1
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|.|+|++|+||+. .+.+||||++++++++.||+ +|.||+||
T Consensus 11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wn 61 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61 (133)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCC
T ss_pred CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccc
Confidence 68999999999999996 36899999999999888887 89999998
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-07 Score=82.29 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=46.9
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~ 455 (471)
....|+|++.+.| . .+.|.|+|++|+||+. .+.+||||++++
T Consensus 15 ~~~~G~l~~~l~y-~---------------------------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l 60 (171)
T 2q3x_A 15 TPAMGDIQIGMED-K---------------------------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYL 60 (171)
T ss_dssp --CCCEEEEEEEE-E---------------------------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEE
T ss_pred CCCccEEEEEEEE-C---------------------------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEE
Confidence 3457999999999 2 4699999999999986 367999999998
Q ss_pred cCe-----eeeeC---CCCCCcCC
Q 012089 456 KGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 456 ~~~-----~~kTk---~t~nP~Wn 471 (471)
.++ ++||+ +|+||+||
T Consensus 61 ~~~~~~~~~~kT~v~~~t~nP~wn 84 (171)
T 2q3x_A 61 LENGACIAKKKTRIARKTLDPLYQ 84 (171)
T ss_dssp EETTEEEEEEECCCCCSCSSCEEE
T ss_pred ECCCccccceeCccCCCCCCCCCC
Confidence 643 44776 88999997
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-07 Score=78.94 Aligned_cols=46 Identities=28% Similarity=0.400 Sum_probs=41.0
Q ss_pred CcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 426 ~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
...|.|.|+|++|+||+. .+.+||||++++++++.||+ +|.||+||
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wn 65 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWE 65 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEE
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcc
Confidence 367999999999999987 36899999999999888887 89999997
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-07 Score=77.10 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=38.4
Q ss_pred ceEEEEEEeeeecCCCC------CCCCcEEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEGE------NHNNPYAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~~------~~~dpyv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
.|.|.|+|++|+||+.. +.+||||++++++ .++||+ +|.||+||
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wn 57 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWN 57 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEE
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCccc
Confidence 68999999999999972 7899999999986 445777 88999997
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=4e-07 Score=77.75 Aligned_cols=45 Identities=27% Similarity=0.590 Sum_probs=40.7
Q ss_pred cceEEEEEEeeeecCCCC--CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~--~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|.|+|++|+||+.. +.+||||+++++++++||+ ++.||+||
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wn 54 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWN 54 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEE
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccC
Confidence 578999999999999863 5899999999999888887 88999997
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.4e-07 Score=76.50 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=37.4
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEEc-----CeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYK-----GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~-----~~~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|.+|+||+. .+.+||||++++. ..++||+ +|+||+||
T Consensus 18 ~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wn 72 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFN 72 (134)
T ss_dssp ETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEE
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCc
Confidence 35799999999999986 4689999999993 3344777 89999997
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.6e-07 Score=75.55 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=40.4
Q ss_pred cceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeeeeeC----CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTK----KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~~~kTk----~t~nP~Wn 471 (471)
..|.|.|+|++|+||+.. +.+||||++++++++.||+ ++.||+||
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wn 59 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEE
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccC
Confidence 679999999999999973 5799999999999888887 58999997
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.3e-07 Score=75.79 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.0
Q ss_pred cceEEEEEEeeeecCCCC---C-----------CCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE---N-----------HNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~---~-----------~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
..|.|.|+|++|+||+.. + .+||||+++++++.. ||+ +|+||+||
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~Wn 66 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccC
Confidence 579999999999999863 1 399999999987764 665 89999997
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-06 Score=73.55 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=38.2
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--eeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--DKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~--~~~kTk---~t~nP~Wn 471 (471)
....|.|+|++|+||+. .+.+||||++++++ +..||+ +|+||+||
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wn 55 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWN 55 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEE
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCcc
Confidence 35789999999999986 36799999999975 455787 99999997
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-06 Score=74.22 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=36.1
Q ss_pred cceEEEEEEeeeecCCCC---CCCCcEEEEEEcC------eeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG------DKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~------~~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|++|+||+.. +.+||||++++.+ ...||+ +|.||+||
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wn 74 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCC
T ss_pred CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCC
Confidence 679999999999999963 5899999999974 334777 89999998
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-06 Score=76.47 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=39.5
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|++|+||+. .+.+||||+++++++++||+ +|+||+||
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wn 84 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWK 84 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEE
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeEC
Confidence 57899999999999993 23599999999999777887 89999997
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-06 Score=74.50 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=35.1
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
+.+.|.|+|++|++|+..+.+||||++. +...+.|. ++.||+||
T Consensus 3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~-~~~~kt~~~~~~t~nP~Wn 49 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK-VQNVKSTTIAVRGSQPSWE 49 (131)
T ss_dssp CCEEEEEEEEEEECSSCGGGCEEEEEEE-ETTEEEECCCEESSSCEEE
T ss_pred cceEEEEEEEEeECCCCCCCcCeEEEEE-ecCEEEeEecCCCCCceEC
Confidence 4689999999999998777899999999 33323222 69999997
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.7e-05 Score=82.67 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=40.6
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|.|.|++|+||+. .+.+||||++++++++.||+ +|+||+||
T Consensus 392 ~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wn 441 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWT 441 (540)
T ss_dssp TEEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCC
T ss_pred cccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCC
Confidence 46899999999999987 35799999999999888888 89999998
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=2e-05 Score=69.46 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=34.5
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC--CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK--KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk--~t~nP~Wn 471 (471)
..+.|.|+|++|++|+..+.+||||++.....+.+|. ++.||+||
T Consensus 12 ~~~~L~V~V~~A~~l~~~g~~DPYV~v~~~~~kt~~~~~~t~nP~Wn 58 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGSQPSWE 58 (167)
T ss_dssp CCCEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEESSSCEEE
T ss_pred ceEEEEEEEEEEECCCCCCCCCeEEEEEecceEEEEecCCCCCCCCC
Confidence 4689999999999997677899999999221111222 69999997
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=97.59 E-value=5.2e-05 Score=78.90 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=40.0
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|.|+|.+|+||+. .+.+||||++++++++.||+ +|+||+||
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~ 435 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN 435 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEE
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccC
Confidence 57899999999999986 36899999999998888887 89999997
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.1e-05 Score=64.05 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=37.2
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC----CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK----KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk----~t~nP~Wn 471 (471)
=.|+|.|.+|.||++ .+|||+++++.+.++||| .+.||+||
T Consensus 21 msL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfn 65 (144)
T 3l9b_A 21 MALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFD 65 (144)
T ss_dssp EEEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEE
T ss_pred EEEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEc
Confidence 369999999999996 799999999999999999 38999997
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=77.72 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=39.0
Q ss_pred cceEEEEEEeeeecCCC------CCCCCcEEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG------ENHNNPYAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~------~~~~dpyv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|++|+||+. .+.+||||++++++ .++||+ +|+||+||
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWN 72 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWN 72 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEE
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeee
Confidence 57899999999999997 36899999999985 345777 89999997
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00034 Score=74.37 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=37.7
Q ss_pred cceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC-----eeeeeC---CC-CCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG-----DKKRTK---KN-SRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~-----~~~dpyv~v~~~~-----~~~kTk---~t-~nP~Wn 471 (471)
..+.|.|+|++|+||+.. +.+||||++.+.+ .++||+ +| .||+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~Wn 553 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccC
Confidence 678999999999999862 5799999999955 345887 65 899997
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00095 Score=71.86 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=36.5
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEc-----CeeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYK-----GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~-----~~~~kTk---~t~nP~Wn 471 (471)
.+.|.|.|.+|+||+. .+.+||||++++. ..++||+ +|+||+||
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wn 225 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWN 225 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEE
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCcc
Confidence 4689999999999986 4689999999983 3344776 89999997
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=71.96 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=36.6
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eeeeeC----CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTK----KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~-------~~~kTk----~t~nP~Wn 471 (471)
..+.|.|+|++|++|+.+ .+||||+|.+.+ +++||+ ++.||+||
T Consensus 648 ~~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWN 702 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK-QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYD 702 (816)
T ss_dssp CCEEEEEEEEEEECCCSS-CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCC
T ss_pred cceEEEEEEEEcccCCCC-CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEc
Confidence 458999999999999974 799999999875 344777 35899998
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0022 Score=69.92 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=35.6
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eeeeeC-----CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTK-----KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~------~~~kTk-----~t~nP~Wn 471 (471)
..+.|.|.|++|++|+. +.+||||+|.+.+ ++.||| ++.||+||
T Consensus 676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWn 730 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWK 730 (799)
T ss_dssp TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCC
T ss_pred eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeee
Confidence 57899999999999996 4799999999954 123554 45899998
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=70.44 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=35.4
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eeeeeC---C-CCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTK---K-NSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~------~~~kTk---~-t~nP~Wn 471 (471)
...|.|.|++|++|+.+ .+||||+|.+.+ .++||| + +.||+||
T Consensus 724 ~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWn 776 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWD 776 (885)
T ss_dssp CEEEEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCC
T ss_pred ceEEEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeec
Confidence 45899999999999974 799999999965 134777 3 5999998
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.61 E-value=1.1 Score=40.44 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=41.9
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCC----CCCeeEEEEEECcc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVG----GHDRLGMQLVPLKL 355 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~~----~d~~lG~~~i~L~~ 355 (471)
..++|.+...+.+|.|+|++.+.+... ...-|.|+++....-. .+..+|.+.+||-.
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 346788888899999999999998743 3567999998765321 22467888888743
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=91.23 E-value=3.2 Score=35.26 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=83.3
Q ss_pred ccCCceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC-------CCCeE
Q 012089 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-------ESQIL 330 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-------~~~~L 330 (471)
...-.+.+.|+|.++.==+..- ..+..+|+.-+.++=-..+.+.|.+.. ..+|.+|.+-.|.+... .+..+
T Consensus 13 l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 13 LERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp CCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred ccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 3445688999999876322111 123457866666654344444666654 88999999888888522 14579
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCCCc-eEEEEecccccCCCCCCCC--ccceEEEEEEEEEec
Q 012089 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDM--KQRGKIVVELTYVPF 395 (471)
Q Consensus 331 ~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~--~~~G~l~l~l~y~p~ 395 (471)
.++++... .+.-+.+|.+.|+|.++..... .....+|... ++ ..-|+|.+.++...+
T Consensus 92 ~lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~-------~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 92 TLEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIGT-------KGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBS-------SSCCTTSEEEEEEEEEEEC
T ss_pred EEEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEcC-------CCCcceEEEEEEEEEEecc
Confidence 99998874 2345689999999999875443 3334444331 23 478999999998753
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=90.48 E-value=0.57 Score=38.24 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=32.1
Q ss_pred cceEEEEEEeeeec--CCC-CCCCCcEEEEEEcCee-----e--eeC-CCCCCcCC
Q 012089 427 GAGLLSVLVQGAED--VEG-ENHNNPYAIILYKGDK-----K--RTK-KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~--L~~-~~~~dpyv~v~~~~~~-----~--kTk-~t~nP~Wn 471 (471)
.+.-|+|.+.++.- |+. ....||||.+.+.... + .|| +|..|+||
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wn 59 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWK 59 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTT
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCcc
Confidence 45688888877663 333 2469999999886443 2 345 99999998
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.35 Score=40.05 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=33.2
Q ss_pred cceEEEEEEeeeecCCC----CCCCCcEEEEEEcCeee-------eeC-CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGDKK-------RTK-KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~~~~~~-------kTk-~t~nP~Wn 471 (471)
..+-|+|.+.++.--+. ....||||.+.+..... .|| +|..|+||
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wn 64 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWD 64 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCcccc
Confidence 56789999987775332 34799999998865422 445 99999998
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=1.4 Score=48.57 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=61.4
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee---cCCCCeEEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFD 336 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~---~~~~~~L~v~v~d 336 (471)
...++|+|.++.++... ..++-||.+.+ |++... ...|+.+.-..+|.|||...|.+. -|....|.+++|+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 46789999999998754 34677887665 444332 234544455678999999999876 2347789999999
Q ss_pred cCCC--C----------CCCeeEEEEEECcccC
Q 012089 337 WDKV--G----------GHDRLGMQLVPLKLLT 357 (471)
Q Consensus 337 ~d~~--~----------~d~~lG~~~i~L~~l~ 357 (471)
.... + .+..+|.+.++|-+-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EC----------------CEEEEEEEEESBCTT
T ss_pred ecCCccCccccccccccccceEEEEeeeEECCc
Confidence 7431 1 2347899888886543
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=89.37 E-value=1.8 Score=48.16 Aligned_cols=93 Identities=23% Similarity=0.199 Sum_probs=61.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEE--cCccccc-eeeeeecCCCCCeEeeEEEEEee---cCCCCeEEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFD 336 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~~-~kT~v~~~t~nP~wne~f~f~v~---~~~~~~L~v~v~d 336 (471)
...++|+|.++.++.... ....+-||.+.+ |++.... .+|+. ....+|.|||...|.+. -|....|.++||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 457899999998886432 234677888777 4333322 23433 33457889999999876 2447789999998
Q ss_pred cCCC----CCCCeeEEEEEECcccC
Q 012089 337 WDKV----GGHDRLGMQLVPLKLLT 357 (471)
Q Consensus 337 ~d~~----~~d~~lG~~~i~L~~l~ 357 (471)
.... ..+..||.+.++|-+..
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 7642 12357999999997654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 471 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-25 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 8e-21 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 8e-21 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-20 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-19 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 3e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-17 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-17 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 7e-17 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-16 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-15 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-15 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 4e-15 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 8e-14 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-13 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-11 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 6e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-09 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 99.4 bits (247), Expect = 1e-25
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S P G L V +V A L DFL DPYV+L+ + K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD--QKSNVAEGMGTTPEWN 59
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
E F V E +++ + ++FD D D +G +PL+ + F + T +
Sbjct: 60 ETFIFTVSEGTTEL-KAKIFDKDVGTEDDAVGEATIPLEPV-------FVEGSIPPTAYN 111
Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
KD + +G+I V L++ P S
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.6 bits (211), Expect = 8e-21
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
K VGIL VKV++A+ LL DF G SDP+ L L ++L KNLNPEWN+ F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM 380
+K+ + ++ VFD D D LG +PL + + + L +
Sbjct: 60 PIKDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD-------LEQ 111
Query: 381 KQRGKIVVELTYV 393
+G I +E+ +
Sbjct: 112 AFKGVIYLEMDLI 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.9 bits (212), Expect = 8e-21
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE F+ ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+ +L++ + D + + LG + + E KE +
Sbjct: 65 DPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113
Query: 383 RGKIVVELTYVP 394
+ + L
Sbjct: 114 EMVLEMSLEVAS 125
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.8 bits (209), Expect = 2e-20
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN--FKLV 321
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE FK+
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.8 bits (204), Expect = 1e-19
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
+L V V A L+ D G SDPYVKL L + +KT K +LNPEWNE F+
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+KE + + L ++++DWD +D +G + L + LL
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.6 bits (193), Expect = 3e-18
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 322 VKEP---ESQILQLQVFDWDKVGGH--DRLGMQLVPL-KLLTPHETKEFTL 366
++L++ ++D +V + LG L+ L L E + L
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.8 bits (188), Expect = 2e-17
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE+F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 322 VKEPESQILQLQV--FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379
V + Q +Q+ V D+DK+G +D +G V + I+
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144
Query: 380 MKQRGKIVVELT 391
++ ++ L
Sbjct: 145 LQVEEEVDAMLA 156
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.1 bits (186), Expect = 3e-17
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--------- 300
PI + I +G L + +++A L+ +D G SDP+VK+ L +
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 301 --KKTTVKKKNLNPEWNENFKLVV---KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL 355
++T +K+LNPEWN+ ++ + L++ V+D+D+ +D LG L+ L
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 356 LTPHETKEFTLDLLKHT 372
+ + L + T
Sbjct: 124 TSHLDNTPRWYPLKEQT 140
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.7 bits (183), Expect = 7e-17
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V V++A L K D G SDPYVK++L K KKT VKK N +NE F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 322 VKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++ V D ++ ++ +G ++
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 1e-16
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V + A L D TSDPY+K+++ EK KT V +K L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK-EFTLDLLK 370
L + +D+ D +G L+PL + E K +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.2 bits (176), Expect = 7e-16
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
G+L V +++AS L D G SDPYVK SL E KK T++KK LNP +NE
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 322 V--KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
V + E+ L + V D+D +G ++ +G+ V + PH + + ++L +
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHW-AEMLAN 130
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 1e-15
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L + V+ A K PYV++++ G+ KKT +P+W + ++V
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPH----ETKEFTLDLLKHTNISDPK 378
L +V+ + LG + + L + E TL L D +
Sbjct: 63 PV--SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG-----GDKE 115
Query: 379 DMKQRGKIVVELTYVP 394
+ G + + L +
Sbjct: 116 PTETIGDLSICLDGLQ 131
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.6 bits (172), Expect = 2e-15
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 261 KPVGILHVKVVRASKLLK--KDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN 315
+P L V+++ +L K K+ DP V + + G + + NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
F+ V P+ +++ V D+D +D +G +P L
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 105
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.9 bits (170), Expect = 4e-15
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
G L V ++R L D G SDP+VKL L + K T +KKK LNPE+NE F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 322 VKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
+K + L + V+D+D +D +G L + E + + LK+ +
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGG--CQLGISAKGERLKHWYECLKNKD 126
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.1 bits (160), Expect = 8e-14
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V++++A L KD G SDPYVK+ L ++ +T V +K LNP +NE F +
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL--DLLK 370
+ E + L V+D+D+ HD +G ++ L + + L D+L+
Sbjct: 78 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 64.5 bits (156), Expect = 3e-13
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 25/142 (17%)
Query: 264 GILHVKVVRASKLLKKDFL-----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312
G+L +K+ A L + DPY+ L++ + +T K+K +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSP 63
Query: 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
W++ F V +L VF +G D + + + L + ++ F +
Sbjct: 64 AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI---- 117
Query: 373 NISDPKDMKQRGKIVVELTYVP 394
D++ GK+ V +
Sbjct: 118 ------DLEPEGKVYVIIDLSG 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 1e-11
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLS-LTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
L V + A + G D YV+ S +T +KK+ L+ W E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 323 KEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
E E L L + D+ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.6 bits (141), Expect = 2e-11
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 17/131 (12%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVV 322
L + + S P+ + + K KK + PEW F +
Sbjct: 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63
Query: 323 KEPESQILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
E +Q+ + + +G+ ++ + + EF LDL +
Sbjct: 64 YEGRV--IQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------Q 109
Query: 382 QRGKIVVELTY 392
+ K+++ + Y
Sbjct: 110 PQAKVLMCVQY 120
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (131), Expect = 6e-10
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-----EKLPWKKTTVKKKNLNPEWNEN--F 318
L + V+ L ++ YV++ L G ++ K + ++NP W E
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
+ PE L++ V + + LG +++P+ L
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSG 95
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.2 bits (127), Expect = 3e-09
Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + K TT+ + P W ++F +
Sbjct: 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 54
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTLDLLKHTNISDPKDMK 381
+ + ++V++ + +G +PL+ + + E L L D + +
Sbjct: 55 RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL-------DSQAIM 105
Query: 382 QRGKIV 387
+I
Sbjct: 106 ADSEIC 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.88 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.87 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.85 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.8 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.79 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.78 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.77 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.73 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.72 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.67 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.66 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.64 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.62 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.54 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.37 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.9 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.84 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 98.82 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 98.78 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 98.78 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 98.77 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.74 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 98.74 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 98.68 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.68 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 98.66 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.56 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 98.42 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 98.34 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 98.31 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 98.3 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 98.28 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 98.01 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 97.76 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 97.6 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.45 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.4e-23 Score=172.97 Aligned_cols=123 Identities=36% Similarity=0.575 Sum_probs=104.7
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (471)
.+.|+|+|+|++|++|+.+|..|.+||||++++++++ ++|+++++|.||.|||+|.|.+.++ .+.|.|+|||++.+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence 4689999999999999999999999999999998765 4899999999999999999999875 46899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
++|++||++.++|+++..+..+++++. .. ....+.+|+|+++++|..
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~~~~~~l~--~~-----~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQPNCYVLK--NK-----DLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSCCEECCCB--CS-----CTTSCCSSEEEEEEEEEE
T ss_pred cCcceEEEEEEEHHHCCCCCceEEEcc--cc-----CCCCceeEEEEEEEEEEE
Confidence 999999999999999987765544332 21 123556799999999863
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=5.5e-22 Score=169.01 Aligned_cols=126 Identities=32% Similarity=0.508 Sum_probs=105.8
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
....|.|+|+|+|++|++|+.+|..|++||||+++++++.. +|++++ ++.||.|||+|.|.+.+. ...|.|+|||
T Consensus 4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~---~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d 79 (136)
T d1wfja_ 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ---KSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEE---ECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeE---EEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence 45678999999999999999999999999999999987653 666665 689999999999999864 4579999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
+|.+++|++||++.++|.++... .....|+.+.. .++..|+|+++++|.|.
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEEC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeC
Confidence 99999999999999999987543 33445666543 25678999999999984
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=5.9e-21 Score=160.30 Aligned_cols=121 Identities=26% Similarity=0.405 Sum_probs=105.8
Q ss_pred ceEEEEEEEEccccccC---ccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 263 VGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
.+.|+|+|++|+||+.. |..|.+||||++++++.....++|+++.++.||.|||+|.|.+.+.....|.++|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 37899999999999864 456899999999998766666799999999999999999999988777889999999986
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
. +|++||++.++|+++..+.....|++|. ....|+|++++++.|
T Consensus 82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence 4 6889999999999999888888999884 345799999998876
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.80 E-value=2.9e-19 Score=151.82 Aligned_cols=117 Identities=24% Similarity=0.340 Sum_probs=100.0
Q ss_pred CceEEEEEEEEccccccCc-----------cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeE
Q 012089 262 PVGILHVKVVRASKLLKKD-----------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL 330 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d-----------~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L 330 (471)
-.|.|+|+|++|++|++.+ ..+.+||||++++++... .+|+++.++.||.|||+|.|.+.+ .+.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l 79 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence 3599999999999998754 356789999999986553 478999999999999999999975 3689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCCC--ceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 331 ~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.|+|||++.+++|++||++.++|+++..+. ....|++|. +.|++++.+++.|
T Consensus 80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------p~G~v~l~v~~~~ 133 (136)
T d1gmia_ 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------------PEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------------SSCEEEEEEEEEE
T ss_pred EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC------------CCcEEEEEEEEEe
Confidence 999999999999999999999999997553 356788762 4699999999987
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4e-19 Score=150.31 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=98.3
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
+.|.|+|++|++++.++..+.+||||++.++++. ++|++++++.||.|||.|.|.+.. .+.|.|+|||++.+++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d 80 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD 80 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence 7899999999999998888999999999999865 489999999999999999999864 46899999999999999
Q ss_pred CeeEEEEEECcccCC---C--CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 344 DRLGMQLVPLKLLTP---H--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~---~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
++||++.++|.++.. + .....++.+... .......|+|.+.+.++.
T Consensus 81 ~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-----~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 81 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEE
T ss_pred ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-----CCCceEEEEEEEEEeeEE
Confidence 999999999998742 2 223444444321 123567899999998875
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=7.3e-19 Score=150.69 Aligned_cols=111 Identities=33% Similarity=0.434 Sum_probs=98.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d 336 (471)
+....+.|+|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 5566789999999999999999999999999999976655567999999999999999999987632 35789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
++.++++++||++.++|+++..+.....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred cCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 999999999999999999998888888999874
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=9.8e-19 Score=147.75 Aligned_cols=107 Identities=35% Similarity=0.503 Sum_probs=92.6
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK 339 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~d~ 339 (471)
.+.|+|+|++|+||+.+|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+.... ...|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 4889999999999999999999999999999543 234568999999999999999999987543 4579999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
+++|++||++.++|.++..+ ....|++|..
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence 99999999999999998765 4567888854
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.3e-18 Score=146.66 Aligned_cols=113 Identities=31% Similarity=0.444 Sum_probs=94.0
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~ 335 (471)
.+....+.|+|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 12 ~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~ 91 (130)
T d1dqva1 12 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 91 (130)
T ss_dssp ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred EEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence 35667799999999999999999999999999999987665667999999999999999999998643 3567999999
Q ss_pred EcCCCCCCCeeEEEEEECcc-cCC-CCceEEEEeccc
Q 012089 336 DWDKVGGHDRLGMQLVPLKL-LTP-HETKEFTLDLLK 370 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~-l~~-~~~~~~~~~l~~ 370 (471)
|++.+++|++||++.+++.. +.. ......|++|..
T Consensus 92 d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 92 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred EcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 99999999999999998643 332 233456777753
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.4e-17 Score=140.24 Aligned_cols=121 Identities=23% Similarity=0.406 Sum_probs=90.3
Q ss_pred eEEEEEEEEcccccc--CccCCCCCcEEEEEEcCcc--ccceeeeeec-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 012089 264 GILHVKVVRASKLLK--KDFLGTSDPYVKLSLTGEK--LPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (471)
Q Consensus 264 G~L~V~v~~a~~L~~--~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d 338 (471)
..|+|+|++|++|+. .+.++++||||++++.+.. ...++|++++ +++||.|||+|.|.+..+....|.++|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 479999999999975 4567889999999995422 2345787665 5579999999999988766778999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
..++|++||++.++|+++.++. .+++|... ....-..++|.+.+++
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~-----~g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK-----NGDQHPSATLFVKISI 129 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCEE---EEEEEECT-----TSCEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCCC---EEEECCCC-----CcCCCCCCEEEEEEEE
Confidence 9999999999999999997652 35565331 1112245678787775
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.2e-18 Score=149.12 Aligned_cols=109 Identities=28% Similarity=0.419 Sum_probs=93.0
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc-----------cceeeeeecCCCCCeEeeEEEEEeec---CCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLVVKE---PESQ 328 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~-----------~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~ 328 (471)
.|.|.|+|++|+||+.+|..|.+||||++++.+... .+++|++++++.||.|||+|.|.... ....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 589999999999999999999999999999954321 23579999999999999999997432 2356
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 012089 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371 (471)
Q Consensus 329 ~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~ 371 (471)
.|.|+|||++.+++|++||++.++|.++..+.....|++|.+.
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 8999999999999999999999999999887777889988653
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.1e-17 Score=140.57 Aligned_cols=112 Identities=24% Similarity=0.352 Sum_probs=92.1
Q ss_pred cccCCceEEEEEEEEccccccCccCC-CCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g-~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~v~ 333 (471)
.+....+.|+|+|++|+||+.++..+ .+||||++++.+.....++|++++++.||.|||+|.|..... ....|+|+
T Consensus 16 ~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~ 95 (138)
T d1ugka_ 16 EYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFT 95 (138)
T ss_dssp EEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEE
T ss_pred EEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEE
Confidence 35566789999999999999988665 479999999977666667999999999999999999974322 24589999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCC-CceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~ 369 (471)
|||++.+++|++||++.++|+++... ....+|..+.
T Consensus 96 V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 96 ILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred EEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 99999999999999999999998644 3455666653
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.4e-17 Score=140.12 Aligned_cols=110 Identities=21% Similarity=0.176 Sum_probs=94.2
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc-ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK-LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
.++...+.|.|+|++|++|+. .|.+||||++++.++. ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 20 ~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V 96 (138)
T d1wfma_ 20 DYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTL 96 (138)
T ss_dssp EEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEE
T ss_pred EECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEE
Confidence 356677899999999999953 4789999999997642 3346899999999999999999998643 367899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
||++.++++++||++.|+|.++......+.|++|..
T Consensus 97 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 97 RTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred eeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 999999999999999999999987777889999865
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.2e-16 Score=133.34 Aligned_cols=120 Identities=18% Similarity=0.285 Sum_probs=90.1
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
+.|+|+|.+|++|.++| ++||||++++++.+ .+|.+++ +.||.|||+|.|.+.++ ...|.|+|||++.. +|
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d 72 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WD 72 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CE
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CC
Confidence 68999999999999876 67999999998754 3777775 55999999999999876 46899999999865 68
Q ss_pred CeeEEEEEECcccCCC--CceEEEEecccccCCCC----CCCCccceEEEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISD----PKDMKQRGKIVVELTY 392 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~--~~~~~~~~l~~~~~~~~----~~~~~~~G~l~l~l~y 392 (471)
++||++.|+|+++..+ .....|+.|........ .........|+++.+|
T Consensus 73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 9999999999998643 34456887754321110 0012245578887776
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.2e-16 Score=133.34 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=86.4
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEE-eecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~-v~~~--~~~~L~v 332 (471)
.+....+.|+|+|++|+||+..+..+.+||||++++.++ ....++|++++++.||.|||+|.|. +... ....|.|
T Consensus 8 ~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i 87 (125)
T d2bwqa1 8 WFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 87 (125)
T ss_dssp EEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred EEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEE
Confidence 355667899999999999999998999999999999543 3345789999999999999999996 4322 2568999
Q ss_pred EEEEcCCCC--CCCeeEEEEEECcccCCCCceEEEEec
Q 012089 333 QVFDWDKVG--GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 333 ~v~d~d~~~--~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
+|||++..+ ++++||++.++|+++..+.. ..|++|
T Consensus 88 ~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 88 TLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EEEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EEEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 999999754 45699999999999876543 457776
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.7e-16 Score=134.84 Aligned_cols=98 Identities=29% Similarity=0.361 Sum_probs=78.2
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v 334 (471)
+....|.|.|+|++|+||+.++..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v 89 (138)
T d1w15a_ 10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 89 (138)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence 44566899999999999999998899999999998433 334568999999999999999999986433 45799999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLL 356 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l 356 (471)
||++.++++++||++.+++.+.
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 90 LDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EECCTTSCCEEEEEEEESTTCC
T ss_pred EeCCCCCCCCEEEEEEEcchhC
Confidence 9999999999999999999764
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=3.6e-16 Score=135.77 Aligned_cols=99 Identities=37% Similarity=0.536 Sum_probs=85.4
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~ 333 (471)
.+....|.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+
T Consensus 19 ~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~ 98 (157)
T d1uowa_ 19 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 98 (157)
T ss_dssp EEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred EEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEE
Confidence 355667999999999999999998999999999998653 333468999999999999999999987543 5689999
Q ss_pred EEEcCCCCCCCeeEEEEEECccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLL 356 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l 356 (471)
|||++.++++++||++.+++.+.
T Consensus 99 v~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 99 VLDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp EEECCSSSCCCEEEEEEEETTCC
T ss_pred EcccCCCCCCceeEEEEEecccC
Confidence 99999999999999999999753
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=4.4e-16 Score=131.95 Aligned_cols=99 Identities=34% Similarity=0.456 Sum_probs=85.2
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
+....|.|+|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.+.+
T Consensus 10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v 89 (137)
T d2cm5a1 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 89 (137)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence 45667999999999999999988899999999999543 33456899999999999999999998643 356899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~ 357 (471)
||++..++|++||++.+++.++.
T Consensus 90 ~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 90 WDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred eeCCCCCCCCEEEEEEeCccccC
Confidence 99999999999999999998653
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.7e-15 Score=125.64 Aligned_cols=110 Identities=20% Similarity=0.323 Sum_probs=87.0
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
.+.|.+..+..++. ..+.+||||++++.+.. ...++|+++++|+||+|||+|.|.+.+ .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence 34555555555544 46899999999996542 223578999999999999999999975 468999999986
Q ss_pred CCeeEEEEEECcccC-----CCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 343 HDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 343 d~~lG~~~i~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
|+++|.+.+++.++. .+...+.|++| .++|+|+++++|++
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeC------------CCCEEEEEEEEEec
Confidence 679999999998874 35567788886 34799999999986
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=8.9e-16 Score=131.41 Aligned_cols=111 Identities=36% Similarity=0.539 Sum_probs=90.4
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
.+....|.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.. .....|.|.
T Consensus 14 ~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~ 93 (145)
T d1dqva2 14 CYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 93 (145)
T ss_dssp EEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCE
T ss_pred EEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEE
Confidence 3556679999999999999998888999999999997643 234689999999999999999998763 235679999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++..++|++||++.+++..+... ....|+++.
T Consensus 94 v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 94 VVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp EEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred EEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 99999999999999999999876432 233455543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.8e-12 Score=106.86 Aligned_cols=88 Identities=24% Similarity=0.434 Sum_probs=67.0
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCc---cccceeee--eecCCCCCeEeeE-EEE-EeecCCCCeEEEEEEEc
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTT--VKKKNLNPEWNEN-FKL-VVKEPESQILQLQVFDW 337 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~---~~~~~kT~--v~~~t~nP~wne~-f~f-~v~~~~~~~L~v~v~d~ 337 (471)
+|+|+|++|++|+.+ +.||||++++-+. ...+++|+ +.++++||.|||. |.| .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999865 4799999999541 12223333 3478899999975 444 35555556899999998
Q ss_pred CCCCCCCeeEEEEEECcccCCCC
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
+ |++||++.+||+.+..+.
T Consensus 78 d----~~~lG~~~ipl~~l~~Gy 96 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSGY 96 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCEE
T ss_pred C----CCEEEEEEEEcccCcCCc
Confidence 5 789999999999998763
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=7.3e-10 Score=91.98 Aligned_cols=59 Identities=29% Similarity=0.418 Sum_probs=49.5
Q ss_pred ccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC
Q 012089 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG 457 (471)
Q Consensus 381 ~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~ 457 (471)
.+.|+|.++++|.| ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~p~G~l~~sl~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~ 49 (130)
T d1dqva1 2 APCGRISFALRYLY--------------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP 49 (130)
T ss_dssp CSSCEEEEEEECCS--------------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTT
T ss_pred CCcEEEEEEEEEEC--------------------------------CCCEEEEEEEeeeCCccccCCCCcceEEEEEEcc
Confidence 46799999999977 56899999999999986 35799999999953
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
++.||+ +|.||+||
T Consensus 50 ~~~~~~kT~v~~~t~~P~wn 69 (130)
T d1dqva1 50 DRKKKFQTKVHRKTLNPIFN 69 (130)
T ss_dssp STTSCEECCCCCSCSSCEEE
T ss_pred CCCceEeceeEcCCCCeeee
Confidence 334777 88999997
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=2.2e-09 Score=90.55 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=49.4
Q ss_pred CCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE
Q 012089 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY 455 (471)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~ 455 (471)
.....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 16 ~~~~~G~l~~sl~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l 63 (143)
T d1rsya_ 16 EEEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFL 63 (143)
T ss_dssp --CCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred chhcceEEEEEEEEeC--------------------------------CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEE
Confidence 3456899999999976 45799999999999986 368999999998
Q ss_pred cC---eeeeeC---CCCCCcCC
Q 012089 456 KG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 456 ~~---~~~kTk---~t~nP~Wn 471 (471)
.+ ++.||+ +|.||+||
T Consensus 64 ~~~~~~~~kT~~~~~t~~P~wn 85 (143)
T d1rsya_ 64 LPDKKKKFETKVHRKTLNPVFN 85 (143)
T ss_dssp ETTCCSCEECCCCTTCSSCEEE
T ss_pred cCCCCeeEEEEEeccccCccee
Confidence 43 334776 88999997
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=3e-09 Score=88.87 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
+|+|.++++|.| ..+.|.|.|++|+||+. .+.+||||++++..
T Consensus 1 rG~l~l~l~Y~~--------------------------------~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~ 48 (137)
T d2cm5a1 1 RGKILVSLMYST--------------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDM 48 (137)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC-
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCC
Confidence 599999999987 57899999999999986 36899999999843
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
.++||+ +|.||+||
T Consensus 49 ~~~~~~kT~v~~~t~~P~wn 68 (137)
T d2cm5a1 49 GKKAKHKTQIKKKTLNPEFN 68 (137)
T ss_dssp --CCEEECCCCCSCSSCEEE
T ss_pred ccceeecCEeEcCCCCCccc
Confidence 233776 88999997
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=4.7e-09 Score=87.14 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=36.6
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEE-----cCeeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILY-----KGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~-----~~~~~kTk---~t~nP~Wn 471 (471)
.+.|.|+|++|+||+. .+.+||||++++ +..++||+ +|.||+||
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wn 68 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWN 68 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEE
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccc
Confidence 4689999999999986 357999999998 33345776 88999997
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=2.9e-09 Score=89.15 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=45.8
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~--~ 457 (471)
+|+|+++++|.| .++.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 rG~l~~sl~Y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~ 48 (138)
T d1w15a_ 1 RGELLVSLCYQS--------------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAK 48 (138)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEEETT
T ss_pred CcEEEEEEEEcC--------------------------------CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCc
Confidence 599999999998 56799999999999986 3579999999983 2
Q ss_pred e---eeeeC---CCCCCcCC
Q 012089 458 D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~---~~kTk---~t~nP~Wn 471 (471)
. ++||+ +|.||.||
T Consensus 49 ~~~~~~kT~~~~~t~~P~wn 68 (138)
T d1w15a_ 49 KRISKKKTHVKKCTPNAVFN 68 (138)
T ss_dssp EEEEEEECCCCCSCSSEEEE
T ss_pred ccCccccceeECCCCCCeEC
Confidence 2 22666 88999997
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=4.1e-09 Score=86.65 Aligned_cols=56 Identities=30% Similarity=0.478 Sum_probs=47.0
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc----
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK---- 456 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~---- 456 (471)
|+|++++.|.| ..++|.|+|++|+||+. .+.+||||++++.
T Consensus 1 G~l~l~l~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~ 48 (125)
T d2bwqa1 1 GQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRS 48 (125)
T ss_dssp CEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCS
T ss_pred CEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCC
Confidence 89999999987 46799999999999986 3689999999983
Q ss_pred -CeeeeeC---CCCCCcCC
Q 012089 457 -GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 -~~~~kTk---~t~nP~Wn 471 (471)
..++||+ +|.||+||
T Consensus 49 ~~~~~kT~~~~~t~~P~wn 67 (125)
T d2bwqa1 49 DKNKRRTKTVKKTLEPKWN 67 (125)
T ss_dssp GGGEEECCCCSSBSSCEEE
T ss_pred CccccccCEEcCCCCCEEc
Confidence 2234776 88999997
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=4.9e-09 Score=88.52 Aligned_cols=60 Identities=23% Similarity=0.464 Sum_probs=50.4
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
....|+|+++++|.| .+|.|.|+|++|+||+. .+.+||||++++.
T Consensus 3 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~ 50 (145)
T d1dqva2 3 KADLGELNFSLCYLP--------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLI 50 (145)
T ss_dssp CSCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCC
T ss_pred cCcceEEEEEEEEcC--------------------------------CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEc
Confidence 456899999999998 57899999999999985 3578999999986
Q ss_pred Cee-----eeeC---CCCCCcCC
Q 012089 457 GDK-----KRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~~~-----~kTk---~t~nP~Wn 471 (471)
.+. +||+ +|.||+||
T Consensus 51 ~~~~~~~~~kT~~~~~t~~P~wn 73 (145)
T d1dqva2 51 SEGRRLKKRKTSIKKNTLNPTYN 73 (145)
T ss_dssp TTCCTTSCEECCCCCSCSSCEEE
T ss_pred cCCccceeecCEEEeCCCCceec
Confidence 542 3665 88999997
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=8.6e-09 Score=86.23 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=49.4
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~----~~~dpyv~v~~ 455 (471)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++
T Consensus 5 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l 52 (138)
T d1ugka_ 5 SSGLGTLFFSLEYNF--------------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI 52 (138)
T ss_dssp CCCCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEE
T ss_pred CCCCEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCccceEEEEEE
Confidence 456799999999987 457999999999999863 35899999999
Q ss_pred c---CeeeeeC---CCCCCcCC
Q 012089 456 K---GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 456 ~---~~~~kTk---~t~nP~Wn 471 (471)
. ..+.||+ ++.||+||
T Consensus 53 ~~~~~~~~kT~v~~~t~nP~wn 74 (138)
T d1ugka_ 53 LPEKKHKVKTRVLRKTLDPAFD 74 (138)
T ss_dssp ETTTCSEEECCCCSSCSSCEEE
T ss_pred cCCCCEeEeCeeEeCCCCCcee
Confidence 4 3344777 89999997
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.7e-08 Score=84.40 Aligned_cols=60 Identities=17% Similarity=0.030 Sum_probs=50.9
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEcCee
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDK 459 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~ 459 (471)
.+..|+|++++.|.+ ..+.|.|+|++|+||+..+.+||||++++.++.
T Consensus 9 ~~~~~~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~ 56 (138)
T d1wfma_ 9 WNQAPKLHYCLDYDC--------------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRT 56 (138)
T ss_dssp CSSCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETT
T ss_pred CCcCCEEEEEEEECC--------------------------------CCCEEEEEEEEcCCCCCCCCcCcEEEEEECCCC
Confidence 566799999999976 457999999999999988899999999995422
Q ss_pred ----eeeC---CCCCCcCC
Q 012089 460 ----KRTK---KNSRPCLE 471 (471)
Q Consensus 460 ----~kTk---~t~nP~Wn 471 (471)
+||+ ++.||+||
T Consensus 57 ~~~~~kT~v~~~~~~P~wn 75 (138)
T d1wfma_ 57 GSVEAQTALKKRQLHTTWE 75 (138)
T ss_dssp EEEEEECCCCCCCSSEECS
T ss_pred CccceeeeEECCCCCceEe
Confidence 3665 89999997
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=9.1e-09 Score=88.07 Aligned_cols=60 Identities=30% Similarity=0.542 Sum_probs=49.8
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
.+..|+|.++++|.| .+++|.|.|++|+||+. .+.+||||++++.
T Consensus 8 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~ 55 (157)
T d1uowa_ 8 LEKLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 55 (157)
T ss_dssp GGCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred ceeeeEEEEEEEEcC--------------------------------CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEe
Confidence 356899999999998 56899999999999986 3689999999985
Q ss_pred Ce-----eeeeC---CCCCCcCC
Q 012089 457 GD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~~-----~~kTk---~t~nP~Wn 471 (471)
.. ++||+ ++.||+||
T Consensus 56 ~~~~~~~~~kT~v~~~t~nP~wn 78 (157)
T d1uowa_ 56 QNGKRLKKKKTTIKKNTLNPYYN 78 (157)
T ss_dssp ETTEEEEEEECCCCCSCSSCEEE
T ss_pred cCCccccceecccccCCCCcccC
Confidence 32 12666 88999997
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.5e-08 Score=83.24 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=41.0
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|+|+|++|+||+. .+.+||||++.+++++.||+ +|.||+||
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wn 54 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 54 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCC
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEE
Confidence 46999999999999997 36899999999999988888 89999998
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=1.2e-08 Score=85.61 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=45.9
Q ss_pred ccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC
Q 012089 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG 457 (471)
Q Consensus 381 ~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~ 457 (471)
...|+|++++.|. .|.|.|.|++|+||+. .+.+||||++++..
T Consensus 4 p~~G~l~lsl~y~----------------------------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~ 49 (142)
T d1rh8a_ 4 PITGEIQLQINYD----------------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLP 49 (142)
T ss_dssp CCCCEEEEEEEEE----------------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETT
T ss_pred CcceEEEEEEEEe----------------------------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEec
Confidence 4679999999993 3689999999999986 36899999999843
Q ss_pred ee--------------eeeC---CCCCCcCC
Q 012089 458 DK--------------KRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~~--------------~kTk---~t~nP~Wn 471 (471)
.. +||+ +|.||+||
T Consensus 50 ~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn 80 (142)
T d1rh8a_ 50 GRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80 (142)
T ss_dssp SSCCCEECCCCCHHHHTTTTTTHHHHSCEEE
T ss_pred CcccccccccCCCceeeeccCCcCCCCceeE
Confidence 21 2565 77899997
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=5.7e-08 Score=79.82 Aligned_cols=43 Identities=28% Similarity=0.296 Sum_probs=39.9
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC--CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK--KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk--~t~nP~Wn 471 (471)
+.|.|+|.+|++|.+++..||||++.+++.+.+|+ ++.||+||
T Consensus 2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k~~nP~Wn 46 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWE 46 (128)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEESSSCEEE
T ss_pred eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEecCCCCeEE
Confidence 58999999999999998999999999999888888 88899997
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.34 E-value=1.6e-07 Score=78.02 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=39.8
Q ss_pred cceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeeeeeC----CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTK----KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~~~kTk----~t~nP~Wn 471 (471)
..|.|+|+|++|+||+.. +.+||||+++++++..+|+ ++.||+||
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wn 59 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEE
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEe
Confidence 579999999999999963 6899999999999888776 57899997
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.8e-07 Score=76.48 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=37.4
Q ss_pred ceEEEEEEeeeecCCCC------CCCCcEEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEGE------NHNNPYAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~~------~~~dpyv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
+++|+|+|++|+||+.. +.+||||++.+++ +++||+ ++.||+||
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wn 57 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWN 57 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceec
Confidence 67999999999999862 5899999999976 334776 89999997
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=98.30 E-value=3.1e-07 Score=76.21 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.8
Q ss_pred cceEEEEEEeeeecCCC--------------CCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG--------------ENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~--------------~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
.+|.|.|.|++|+||+. .+.+||||+++++++.. ||+ ++.||+||
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wn 66 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCc
Confidence 57999999999999984 34789999999998765 666 88999997
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.8e-07 Score=75.32 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=39.9
Q ss_pred cceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|.+|++++.+ +.+||||++.++++..||+ +|.||+||
T Consensus 4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wn 54 (133)
T d2nq3a1 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWK 54 (133)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEE
T ss_pred cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEc
Confidence 457899999999999863 5799999999999988887 88999997
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.01 E-value=2.8e-06 Score=69.73 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=33.0
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcC-----eeeeeC----CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKG-----DKKRTK----KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~-----~~~~dpyv~v~~~~-----~~~kTk----~t~nP~Wn 471 (471)
.+|.|.|++|+||+. .+.+||||++++.+ .++||+ ++.||+||
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wn 60 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEE
Confidence 589999999999973 35799999999843 344666 45799997
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=1.5e-05 Score=64.25 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=31.9
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcC------eeeeeC-----CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTK-----KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~~~~dpyv~v~~~~------~~~kTk-----~t~nP~Wn 471 (471)
.|+|+|++|++|+.+ .+||||++.+-+ .+.||+ ++.||+||
T Consensus 2 tl~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wn 53 (122)
T d2zkmx2 2 TLSITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWK 53 (122)
T ss_dssp EEEEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCC
T ss_pred EEEEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEc
Confidence 589999999999864 699999999843 222333 67899997
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.60 E-value=2.5e-05 Score=63.06 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=29.8
Q ss_pred EEEEEEeeeecCCC-CCCCCcEEEEEEcCee-----eeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG-ENHNNPYAIILYKGDK-----KRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~-~~~~dpyv~v~~~~~~-----~kTk---~t~nP~Wn 471 (471)
++.+.++.+..++. .+.+||||++++++.. ++|+ +|+||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~Wn 56 (123)
T d1bdya_ 6 RISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWK 56 (123)
T ss_dssp EEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTT
T ss_pred EEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccc
Confidence 45556666666655 4689999999996532 2343 99999998
|