Citrus Sinensis ID: 012140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MLLLPHFSTKPHLLFSSLSSSSSSLRPRLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQMESSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEEccccccccccEEEEEcHHHHHHccccccccccccccHHcccccccccccHHHHHHccccccccccccccHHHHHEEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccccHHHHccEEEcccEEEEcccccccccccccEEEEEEEcccccccHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccccccHccccccccccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHcccccccccccccHHcccccHHHHcccccccHHHHHccccccccccccccccccEEEccccccccccEEEEEcHHHHHHHcccHHHHccHHHHHHHcccccccccccHHHHHccccccccccccccccEEEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEEEccccccccccEEEEEEcccEEEEccEEEEHccccccHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEcccEcccccEEEEEEEcccccccHcccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mlllphfstkphllfsslsssssslrprlpkfpfypayftkspscpsiachvsttggggaaqmessasvdsvthdlknqrldtetetdggdeskmTKKLKALEdlnwdhsfvrelpgdprtdsipreVLHACytkvspsaevenpqlvAWSESVAdsleldpkeferpdfplffsgatplagavpyaqcygghqfgmwagqlgdgraITLGEILNLKSERWELQlkgagktpysrfADGLAVLRSSIREFLCSEamhflgiptTRALCLVTtgkfvtrdmfydgnpkeepgaIVCRVAQSFLrfgsyqihasrgqedLDIVRTLADYAIRHHFRhienmnkseslsfstgdedhsvvdltsnKYAAWAVEVAERTASLVAQWqgvgfthgvlntdnmsilgltidygpfgfldafdpsftpnttdlpgrrycfanqpdiglwniaQFSTTLAAAKLIDDKEANYVMERFV
Flexible Loop (DISEMBL)
mlllphfstkphlLFSSlsssssslrpRLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQMESSASVDsvthdlknqrldtetetdggdeskmtKKLKAledlnwdhsfvrelpgdprtdsiprEVLHACYTKVspsaevenpqlVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLkgagktpysrFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIhasrgqedldIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV
Low Complexity Region (SEG)
MLLLPHFSTKPHllfsslsssssslRPRLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQMESSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV
Disordered region (IsUnstruct)
******************************KFPFYPAYFTKSPSCPSIACHV****************************************************LNWDHSFVR************REVLHACYTKV*********QLVAWS*************FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIE*****************SVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYV*****
Disordered Region (DISOPRED)
*******STKPHLLFSSLSSSSSSLRPRLPKFPFYPAYFTKSPSCPSIACHVSTT***********************************************EDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV
Disordered Region (DISEMBL)
MLLLPHFSTKPHLLFSS********RPRLPKFPFYPAYFTKSPSCPSIACHVST*******************HDLKNQR*************KMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV
Disordered Region (DISPRO)
*LLLPHFSTKPHLLFSSL***SSSLRPRLPKFPFYPAYFTKSPSCPSIACHVST*********************************************KALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENM**************HSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLPHFSTKPHLLFSSLSSSSSSLRPRLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQMESSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q5NYD9	523	UPF0061 protein AZOSEA380	yes	no	0.695	0.625	0.556	1e-106
A1K5T6	519	UPF0061 protein azo1574 O	yes	no	0.695	0.630	0.571	1e-106
Q2Y8V8	565	UPF0061 protein Nmul_A151	yes	no	0.714	0.594	0.536	1e-105
Q1H0D2	518	UPF0061 protein Mfla_1788	yes	no	0.7	0.635	0.544	1e-104
C1AED7	522	UPF0061 protein GAU_3822	yes	no	0.697	0.628	0.547	1e-103
C4LAV8	519	UPF0061 protein Tola_0683	yes	no	0.689	0.624	0.538	8e-99
Q7UKT5	540	UPF0061 protein RB9953 OS	yes	no	0.704	0.612	0.521	2e-98
B0RS12	518	UPF0061 protein xcc-b100_	yes	no	0.689	0.625	0.522	8e-98
Q8P8F8	518	UPF0061 protein XCC2284 O	yes	no	0.689	0.625	0.522	1e-97
Q4UVM9	518	UPF0061 protein XC_1831 O	yes	no	0.689	0.625	0.522	1e-97

>sp|Q5NYD9|Y3800_AROAE UPF0061 protein AZOSEA38000 OS=Aromatoleum aromaticum (strain EbN1) GN=AZOSEA38000 PE=3 SV=1

 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/354 (55%), Positives = 236/354 (66%), Gaps = 27/354 (7%)

Query: 102 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELD 161
           +++L  D+ FV ELPGDP      R+V  ACY++V P+  V  P L+AWS  VA  L  D
Sbjct: 1   MKNLVLDNRFVHELPGDPNPSPDVRQVHGACYSRVMPTP-VSAPHLIAWSPEVAALLGFD 59

Query: 162 PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE-- 219
             +   P+F   F+G   + G  PYA CYGGHQFG WAGQLGDGRAITLGE +  + +  
Sbjct: 60  ESDVRSPEFAAVFAGNALMPGMEPYAACYGGHQFGNWAGQLGDGRAITLGEAVTTRGDGH 119

Query: 220 --RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVT 277
             RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRALCLV TG+ V 
Sbjct: 120 TGRWELQLKGAGPTPYSRHADGRAVLRSSIREFLCSEAMHHLGVPTTRALCLVGTGEKVV 179

Query: 278 RDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIE 337
           RDMFYDG PK EPGA+VCRVA SF+RFG+++I  SRG E L  +  L D+ I   F  + 
Sbjct: 180 RDMFYDGRPKAEPGAVVCRVAPSFIRFGNFEIFTSRGDEAL--LTRLVDFTIARDFPEL- 236

Query: 338 NMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNM 397
                       G E        + + A W  +V ERTA ++AQW  VGF HGV+NTDNM
Sbjct: 237 ------------GGE-------PATRRAEWFCKVCERTARMIAQWMRVGFVHGVMNTDNM 277

Query: 398 SILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTL 451
           SILGLTIDYGP+G++D FDP +TPNTTD  G+RY F NQP I  WN+ Q +  L
Sbjct: 278 SILGLTIDYGPYGWIDNFDPGWTPNTTDAGGKRYRFGNQPHIAHWNLLQLANAL 331

Aromatoleum aromaticum (strain EbN1) (taxid: 76114)

>sp|A1K5T6|Y1574_AZOSB UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/350 (57%), Positives = 236/350 (67%), Gaps = 23/350 (6%)

Query: 102 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELD 161
           +  L +D+ FVRELP DP T    R+V  A Y++V+P+  V  P LVA S  VA  L  D
Sbjct: 1   MRPLVFDNRFVRELPADPETGPHTRQVAGASYSRVNPTP-VAAPHLVAHSAEVAALLGWD 59

Query: 162 PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERW 221
             +   P+F   F G   L G  PYA CYGGHQFG WAGQLGDGRAITLGE+LN +  RW
Sbjct: 60  ESDIASPEFAEVFGGNRLLDGMEPYAACYGGHQFGNWAGQLGDGRAITLGEVLNGQGGRW 119

Query: 222 ELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMF 281
           ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL LV TG+ V RDMF
Sbjct: 120 ELQLKGAGPTPYSRRADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEKVVRDMF 179

Query: 282 YDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNK 341
           YDGNP+ EPGAIVCRVA SF+RFG++++ A+RG  DLD++  L D+ I   F  IE   +
Sbjct: 180 YDGNPQAEPGAIVCRVAPSFIRFGNFELLAARG--DLDLLNRLIDFTIARDFPGIEGSAR 237

Query: 342 SESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG 401
                               +K A W   V  RTA++VA W  VGF HGV+NTDNMSILG
Sbjct: 238 --------------------DKRARWFETVCARTATMVAHWMRVGFVHGVMNTDNMSILG 277

Query: 402 LTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTL 451
           LTIDYGP+G++D FDP +TPNTTD  GRRY F +QP I  WN+ Q +  L
Sbjct: 278 LTIDYGPYGWVDNFDPGWTPNTTDAGGRRYRFGHQPRIANWNLLQLANAL 327

Azoarcus sp. (strain BH72) (taxid: 62928)

>sp|Q2Y8V8|Y1510_NITMU UPF0061 protein Nmul_A1510 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A1510 PE=3 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/369 (53%), Positives = 251/369 (68%), Gaps = 33/369 (8%)

Query: 99  LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSL 158
           L  L D  +D+ FVR+LPGDP T ++PR+V +A YT+VSP+  V +P+L+AW++ V + L
Sbjct: 15  LPDLFDARFDNRFVRQLPGDPETRNVPRQVRNAGYTQVSPTP-VRSPRLLAWADEVGEML 73

Query: 159 ELDPKEFERPDFPL-----FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEI 213
            +      RP  P+       +G   L    PYA  YGGHQFG WAGQLGDGRAITLGE+
Sbjct: 74  GI-----ARPASPVSPAVEVLAGNRILPSMQPYAARYGGHQFGHWAGQLGDGRAITLGEL 128

Query: 214 LNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG 273
           ++   +R+ELQLKGAGKTPYSR ADG AVLRSS+REFLCSEAMH LG+PTTRAL LV TG
Sbjct: 129 ISPNDKRYELQLKGAGKTPYSRTADGRAVLRSSVREFLCSEAMHSLGVPTTRALSLVATG 188

Query: 274 KFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHF 333
           + V RDMFYDG+P  EPGAIVCRV+ SFLRFG+++I A+  Q++ +++R LAD+ I  HF
Sbjct: 189 EAVIRDMFYDGHPGAEPGAIVCRVSPSFLRFGNFEILAA--QKEPELLRQLADFVIGEHF 246

Query: 334 RHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLN 393
             + + ++   +                  YA W  EV  RT  LVA W  VGF HGV+N
Sbjct: 247 PELASSHRPPEV------------------YAKWFEEVCRRTGILVAHWMRVGFVHGVMN 288

Query: 394 TDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAA 453
           TDNMSILGLTIDYGP+G+L+ FD  +TPNTTD  GRRYC+ NQP I  WN+ + +  L  
Sbjct: 289 TDNMSILGLTIDYGPYGWLEGFDLHWTPNTTDAQGRRYCYGNQPKIAQWNLTRLAGAL-- 346

Query: 454 AKLIDDKEA 462
             LI+D  A
Sbjct: 347 TPLIEDDAA 355

Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) (taxid: 323848)

>sp|Q1H0D2|Y1788_METFK UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/351 (54%), Positives = 241/351 (68%), Gaps = 22/351 (6%)

Query: 105 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKE 164
           L +D+ F+RELPGDP T +  R+V  AC+++V P++ V +P+L+A+S  + ++LEL  +E
Sbjct: 2   LTFDNRFLRELPGDPETSNQLRQVYGACWSRVMPTS-VSSPKLLAYSHEMLEALELSEEE 60

Query: 165 FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQ 224
              P +    +G   + G  PYA CYGGHQFG WAGQLGDGRAI+LGE++N + +RWELQ
Sbjct: 61  IRSPAWVDALAGNGLMPGMEPYAACYGGHQFGHWAGQLGDGRAISLGEVVNRQGQRWELQ 120

Query: 225 LKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDG 284
           LKGAG TPYSR ADG AVLRSS+REFLCSEAMH LGIPTTRAL LV TG  V RDMFYDG
Sbjct: 121 LKGAGVTPYSRMADGRAVLRSSVREFLCSEAMHHLGIPTTRALSLVQTGDVVIRDMFYDG 180

Query: 285 NPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSES 344
           +P+ E GAIVCRV+ SF+RFG+++I A R  +D   ++ L D+ I   F  + N  + E 
Sbjct: 181 HPQAEKGAIVCRVSPSFIRFGNFEIFAMR--DDKQTLQKLVDFTIDRDFPELRNYPEEER 238

Query: 345 LSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404
           L                   A W   +  RTA L+AQW  VGF HGV+NTDNMSILGLTI
Sbjct: 239 L-------------------AEWFAIICVRTARLIAQWMRVGFVHGVMNTDNMSILGLTI 279

Query: 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAK 455
           DYGP+G++D FDP +TPNTTD  GRRYCF  QPDI  WN+ + +  L   K
Sbjct: 280 DYGPYGWVDNFDPGWTPNTTDAAGRRYCFGRQPDIARWNLERLAQALYTLK 330

Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)

>sp|C1AED7|Y3822_GEMAT UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3822 PE=3 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/351 (54%), Positives = 235/351 (66%), Gaps = 23/351 (6%)

Query: 102 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELD 161
           ++ L +D+ FV ELPGDP   +  R+VL A ++ V P+  V  PQL+A +  VA  L   
Sbjct: 1   MQTLRFDNRFVDELPGDPDPRNQRRQVLGAAWSAVQPT-PVTAPQLLAVAPDVAAMLGFS 59

Query: 162 PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERW 221
           P++   P+F   F G   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE++    +RW
Sbjct: 60  PEQTASPEFAAVFGGNALLEGMRPWAACYGGHQFGQWAGQLGDGRAISLGELVTTAGDRW 119

Query: 222 ELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMF 281
           ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL LVTTG  V RD+ 
Sbjct: 120 ELQLKGAGPTPYSRTADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVTTGDPVVRDVL 179

Query: 282 YDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNK 341
           Y+GNP  EPGA+VCRVA SF+RFG+++I  +R   DL  +  L D+ I   F HI+    
Sbjct: 180 YNGNPAPEPGAVVCRVAPSFVRFGNFEIFTAR--HDLTTLAQLVDFTIARDFPHID---- 233

Query: 342 SESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG 401
                   GD D         + AAW  EV ERTA L+  W  VGF HGV+NTDNMSILG
Sbjct: 234 --------GDVD--------ARRAAWFREVCERTAHLMVHWMRVGFVHGVMNTDNMSILG 277

Query: 402 LTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLA 452
           LTIDYGP+G+LD FDP +TPNTTD  GRRY +A QP +  WN+ + +  +A
Sbjct: 278 LTIDYGPYGWLDNFDPQWTPNTTDAQGRRYRYAQQPAVAQWNLMRLADAIA 328

Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) (taxid: 379066)

>sp|C4LAV8|Y683_TOLAT UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1

 Score =  361 bits (926), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 187/347 (53%), Positives = 231/347 (66%), Gaps = 23/347 (6%)

Query: 105 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKE 164
           L++D+ F+RELPGDP T + PR+V  A ++ V+P A V  PQL+A S  VA  L +   E
Sbjct: 4   LHFDNRFIRELPGDPLTLNQPRQVHAAFWSAVTP-APVPQPQLIASSAEVAALLGISLAE 62

Query: 165 FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQ 224
            ++P +    SG   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE+++    RWELQ
Sbjct: 63  LQQPAWVAALSGNGLLDGMSPFATCYGGHQFGNWAGQLGDGRAISLGELIH-NDLRWELQ 121

Query: 225 LKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDG 284
           LKGAG TPYSR  DG AVLRSSIREFLCSEAM  LG+PTTRAL LV TG+ + RDMFYDG
Sbjct: 122 LKGAGVTPYSRRGDGKAVLRSSIREFLCSEAMFHLGVPTTRALSLVLTGEQIWRDMFYDG 181

Query: 285 NPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSES 344
           NP++EPGAIVCRVA SF+RFG +Q+ A RG+ DL  +  L D+ I   F H+        
Sbjct: 182 NPQQEPGAIVCRVAPSFIRFGHFQLPAMRGESDL--LNQLIDFTIDRDFPHLS------- 232

Query: 345 LSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404
                           + +   W  EV   TA L+ +W  VGF HGV+NTDNMSILGLTI
Sbjct: 233 ------------AQPATVRRGVWFSEVCITTAKLMVEWTRVGFVHGVMNTDNMSILGLTI 280

Query: 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTL 451
           DYGP+G++D FD ++TPNTTD  G RYCF  QP I  WN+ + +  L
Sbjct: 281 DYGPYGWVDNFDLNWTPNTTDAEGLRYCFGRQPAIARWNLERLAEAL 327

Tolumonas auensis (strain DSM 9187 / TA4) (taxid: 595494)

>sp|Q7UKT5|Y9953_RHOBA UPF0061 protein RB9953 OS=Rhodopirellula baltica (strain SH1) GN=RB9953 PE=3 SV=1

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/349 (52%), Positives = 231/349 (66%), Gaps = 18/349 (5%)

Query: 104 DLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPK 163
           DL +D+ F R+LP D    +  R+V  A +++V P+  V  P+ VA S+ VA+ + LDPK
Sbjct: 4   DLTFDNRFTRDLPADTEPRNFTRQVHQAGFSRVKPTP-VSAPKWVAGSKEVAELIGLDPK 62

Query: 164 EFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWEL 223
                +     +G     G  P+A CYGGHQFG WAGQLGDGRAI LGE++    + W L
Sbjct: 63  WLGSAELTEVLAGNALADGMDPFAMCYGGHQFGNWAGQLGDGRAINLGEVVTADEKHWTL 122

Query: 224 QLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYD 283
           QLKGAG TPYSR ADGLAVLRSS+REFLCSEAMH LG+PTTRAL LV TG+ V RDMFYD
Sbjct: 123 QLKGAGLTPYSRTADGLAVLRSSVREFLCSEAMHHLGVPTTRALSLVLTGEKVLRDMFYD 182

Query: 284 GNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSE 343
           G+P+ E GAIVCRVA SF+RFG+++I ASR  ED + ++TL ++ IR  F H+ +   +E
Sbjct: 183 GHPEHELGAIVCRVAPSFIRFGNFEIFASR--EDTETLQTLVEHTIRSEFSHLLSEPDAE 240

Query: 344 SLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT 403
                          +  +  AA   EV   TA +V  W  VGF HGV+NTDNMSILGLT
Sbjct: 241 ---------------IGPDVIAAMFEEVCRTTAEMVVHWMRVGFVHGVMNTDNMSILGLT 285

Query: 404 IDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLA 452
           IDYGP+G+L+ +DP +TPNTTD  GRRY +A+QP I  WN+   +  L 
Sbjct: 286 IDYGPYGWLEDYDPDWTPNTTDAQGRRYRYAHQPQIAQWNLVALANALV 334

Rhodopirellula baltica (strain SH1) (taxid: 243090)

>sp|B0RS12|Y1894_XANCB UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1

 Score =  357 bits (917), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 182/348 (52%), Positives = 229/348 (65%), Gaps = 24/348 (6%)

Query: 105 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKE 164
           L +D+    +LPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++
Sbjct: 4   LQFDNRLRAQLPGDPEQGPRRREVL-AAWSAVRPT-PVAAPTLLAYSADVAQRLGLRAED 61

Query: 165 FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQ 224
              P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQ
Sbjct: 62  LASPQFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQ 121

Query: 225 LKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDG 284
           LKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL LV TG  V RDMFYDG
Sbjct: 122 LKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDG 181

Query: 285 NPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSES 344
           +P+ EPGAIVCRVA SF+RFG++++ A+RG  D+D++R   D+ +   F  +    +   
Sbjct: 182 HPRREPGAIVCRVAPSFIRFGNFELPAARG--DVDLLRQWVDFTLARDFPDLPGSGE--- 236

Query: 345 LSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404
                            ++ AAW  +V ERTA +VA W  VGF HGV+NTDNMSILGLTI
Sbjct: 237 -----------------DRIAAWFGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTI 279

Query: 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLA 452
           DYGP+G++D +DP +TPNTTD  GRRY F  QP +  WN+ + +  L+
Sbjct: 280 DYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGRLAQALS 327

Xanthomonas campestris pv. campestris (strain B100) (taxid: 509169)

>sp|Q8P8F8|Y2284_XANCP UPF0061 protein XCC2284 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC2284 PE=3 SV=1

 Score =  357 bits (916), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/348 (52%), Positives = 229/348 (65%), Gaps = 24/348 (6%)

Query: 105 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKE 164
           L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++
Sbjct: 4   LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPT-PVAAPTLLAYSADVAQRLGLRAED 61

Query: 165 FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQ 224
              P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQ
Sbjct: 62  LASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQ 121

Query: 225 LKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDG 284
           LKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL LV TG  V RDMFYDG
Sbjct: 122 LKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDG 181

Query: 285 NPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSES 344
           +P+ EPGAIVCRVA SF+RFG++++ A+RG  D+D++R   D+ +   F  +    +   
Sbjct: 182 HPRREPGAIVCRVAPSFIRFGNFELPAARG--DVDLLRQWVDFTLARDFPDLPGSGE--- 236

Query: 345 LSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404
                            ++ A+W  +V ERTA +VA W  VGF HGV+NTDNMSILGLTI
Sbjct: 237 -----------------DRIASWLGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTI 279

Query: 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLA 452
           DYGP+G++D +DP +TPNTTD  GRRY F  QP +  WN+ + +  L+
Sbjct: 280 DYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGRLAQALS 327

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)

>sp|Q4UVM9|Y1831_XANC8 UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1

 Score =  357 bits (916), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/348 (52%), Positives = 229/348 (65%), Gaps = 24/348 (6%)

Query: 105 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKE 164
           L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++
Sbjct: 4   LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPT-PVAAPTLLAYSADVAQRLGLRAED 61

Query: 165 FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQ 224
              P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQ
Sbjct: 62  LASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQ 121

Query: 225 LKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDG 284
           LKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL LV TG  V RDMFYDG
Sbjct: 122 LKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDG 181

Query: 285 NPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSES 344
           +P+ EPGAIVCRVA SF+RFG++++ A+RG  D+D++R   D+ +   F  +    +   
Sbjct: 182 HPRREPGAIVCRVAPSFIRFGNFELPAARG--DVDLLRQWVDFTLARDFPDLPGSGE--- 236

Query: 345 LSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404
                            ++ A+W  +V ERTA +VA W  VGF HGV+NTDNMSILGLTI
Sbjct: 237 -----------------DRIASWLGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTI 279

Query: 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLA 452
           DYGP+G++D +DP +TPNTTD  GRRY F  QP +  WN+ + +  L+
Sbjct: 280 DYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGRLAQALS 327

Xanthomonas campestris pv. campestris (strain 8004) (taxid: 314565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
224053020	646	predicted protein [Populus trichocarpa]	0.925	0.673	0.774	0.0
297746392	672	unnamed protein product [Vitis vinifera]	0.948	0.663	0.752	0.0
225435594	651	PREDICTED: UPF0061 protein AZOSEA38000-l	0.948	0.685	0.752	0.0
449502212	566	PREDICTED: UPF0061 protein AZOSEA38000-l	0.921	0.765	0.806	0.0
449462599	649	PREDICTED: UPF0061 protein AZOSEA38000-l	0.921	0.667	0.806	0.0
255544744	654	Selenoprotein O, putative [Ricinus commu	0.936	0.672	0.758	0.0
357445153	792	hypothetical protein MTR_1g116880 [Medic	0.834	0.494	0.812	0.0
13430492	585	unknown protein [Arabidopsis thaliana]	0.844	0.678	0.809	0.0
51971098	630	unnamed protein product [Arabidopsis tha	0.844	0.630	0.809	0.0
30684227	633	uncharacterized protein [Arabidopsis tha	0.844	0.627	0.809	0.0

>gi|224053020|ref|XP_002297667.1| predicted protein [Populus trichocarpa] gi|222844925|gb|EEE82472.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/466 (77%), Positives = 392/466 (84%), Gaps = 31/466 (6%)

Query: 26  RPRLP-KFPFYPAYFTKSPSCP----------SIACHVSTTG-----------GGGAAQM 63
           RP LP KFPFYP  F KS  CP          S++ HVST+               ++  
Sbjct: 16  RPFLPIKFPFYPPPFVKSQFCPLSPPAHLFKPSLSRHVSTSSFPSSRGRGSSVSMESSSP 75

Query: 64  ESSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDS 123
           E + S+DSVT DLKNQ L        G +     KLK LEDLNWDHSFVR LPGDPR D+
Sbjct: 76  EPTVSLDSVTQDLKNQTL--------GPDDVSKAKLK-LEDLNWDHSFVRALPGDPRADT 126

Query: 124 IPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGA 183
           IPR+V+HACYTKV PSAEVENP+LVAWS+SVAD  +LDPKEFERPDFPL FSGA+PL GA
Sbjct: 127 IPRQVMHACYTKVLPSAEVENPELVAWSDSVADLFDLDPKEFERPDFPLLFSGASPLVGA 186

Query: 184 VPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVL 243
           +PYAQCYGGHQFGMWAGQLGDGRAITLGE++N KSERWELQLKG+G+TPYSRFADGLAVL
Sbjct: 187 LPYAQCYGGHQFGMWAGQLGDGRAITLGEVVNSKSERWELQLKGSGRTPYSRFADGLAVL 246

Query: 244 RSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 303
           RSSIREFLCSEAMH LGIPTTRAL LVTTGK+VTRDMFYDGN KEEPGAIVCRVA SFLR
Sbjct: 247 RSSIREFLCSEAMHCLGIPTTRALSLVTTGKYVTRDMFYDGNAKEEPGAIVCRVAPSFLR 306

Query: 304 FGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNK 363
           FGSYQIHASRG+EDL+IVR LADYAIRHHF HIENMNKSESLSFSTGDEDHSVVDLTSNK
Sbjct: 307 FGSYQIHASRGKEDLEIVRALADYAIRHHFPHIENMNKSESLSFSTGDEDHSVVDLTSNK 366

Query: 364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNT 423
           YAAW VE+AERTAS++A WQGVGFTHGV+NTDNMSILGLTIDYGPFGFLDAFDPSFTPNT
Sbjct: 367 YAAWTVEIAERTASMIASWQGVGFTHGVMNTDNMSILGLTIDYGPFGFLDAFDPSFTPNT 426

Query: 424 TDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           TDLPGRRYCFANQPDIGLWNIAQF+ TL+ AKLI DKEA+Y MER+
Sbjct: 427 TDLPGRRYCFANQPDIGLWNIAQFTATLSTAKLISDKEADYAMERY 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746392|emb|CBI16448.3| unnamed protein product [Vitis vinifera]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/465 (75%), Positives = 390/465 (83%), Gaps = 19/465 (4%)

Query: 6   HFSTKPHLLFSSLSSSSSSLRPRLPK-FPFYPAYFTKSPSCPSIACHVSTTGGGGAAQME 64
           HFS     +FS    S  SL  +L + F F P   ++S   PS +   S +        +
Sbjct: 52  HFSYSSCPIFSPFFRSHPSLSSKLSRSFHFRPGVSSESAFSPSRSMEASPSA-------D 104

Query: 65  SSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSI 124
           ++A+V+S+   L+NQRL +E            + L  LEDLNWDHSFV ELPGDPRTD I
Sbjct: 105 AAATVESLADGLRNQRLGSEN-----------RVLLRLEDLNWDHSFVHELPGDPRTDPI 153

Query: 125 PREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAV 184
           PR+VLHACYTK+SPSAEVENPQLVAW ESVA+ L+LDPKEFERPDFPL FSGA+ L G +
Sbjct: 154 PRQVLHACYTKISPSAEVENPQLVAWLESVAELLDLDPKEFERPDFPLIFSGASLLVGGL 213

Query: 185 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLR 244
           PYAQCYGGHQFGMWAGQLGDGRAITLGE+LN KSERWELQLKGAG+TPYSRFADGLAVLR
Sbjct: 214 PYAQCYGGHQFGMWAGQLGDGRAITLGELLNSKSERWELQLKGAGRTPYSRFADGLAVLR 273

Query: 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 304
           SSIREFLCSEAMH LGIPTTRALCLVTTGK+VTRDMFYDGNPKEEPGAIVCRVAQSFLRF
Sbjct: 274 SSIREFLCSEAMHSLGIPTTRALCLVTTGKYVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 333

Query: 305 GSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKY 364
           GSYQIHA+RG+EDL IVR LADY IRHHF HIENM +SE LSFSTG++D S+VDLTSNKY
Sbjct: 334 GSYQIHAARGKEDLGIVRALADYTIRHHFPHIENMTRSEGLSFSTGEQDESIVDLTSNKY 393

Query: 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTT 424
           AAW+VEVAERTASLVA WQGVGFTHGVLNTDNMS+LGLTIDYGPFGFLDAFDPS+TPNTT
Sbjct: 394 AAWSVEVAERTASLVASWQGVGFTHGVLNTDNMSVLGLTIDYGPFGFLDAFDPSYTPNTT 453

Query: 425 DLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           DLPGRRYCFANQPDIGLWNIAQF++TL +A+LI+DKEANY MER+
Sbjct: 454 DLPGRRYCFANQPDIGLWNIAQFTSTLMSAELINDKEANYAMERY 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435594|ref|XP_002285614.1| PREDICTED: UPF0061 protein AZOSEA38000-like [Vitis vinifera]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/465 (75%), Positives = 390/465 (83%), Gaps = 19/465 (4%)

Query: 6   HFSTKPHLLFSSLSSSSSSLRPRLPK-FPFYPAYFTKSPSCPSIACHVSTTGGGGAAQME 64
           HFS     +FS    S  SL  +L + F F P   ++S   PS +   S +        +
Sbjct: 31  HFSYSSCPIFSPFFRSHPSLSSKLSRSFHFRPGVSSESAFSPSRSMEASPSA-------D 83

Query: 65  SSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSI 124
           ++A+V+S+   L+NQRL +E            + L  LEDLNWDHSFV ELPGDPRTD I
Sbjct: 84  AAATVESLADGLRNQRLGSEN-----------RVLLRLEDLNWDHSFVHELPGDPRTDPI 132

Query: 125 PREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAV 184
           PR+VLHACYTK+SPSAEVENPQLVAW ESVA+ L+LDPKEFERPDFPL FSGA+ L G +
Sbjct: 133 PRQVLHACYTKISPSAEVENPQLVAWLESVAELLDLDPKEFERPDFPLIFSGASLLVGGL 192

Query: 185 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLR 244
           PYAQCYGGHQFGMWAGQLGDGRAITLGE+LN KSERWELQLKGAG+TPYSRFADGLAVLR
Sbjct: 193 PYAQCYGGHQFGMWAGQLGDGRAITLGELLNSKSERWELQLKGAGRTPYSRFADGLAVLR 252

Query: 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 304
           SSIREFLCSEAMH LGIPTTRALCLVTTGK+VTRDMFYDGNPKEEPGAIVCRVAQSFLRF
Sbjct: 253 SSIREFLCSEAMHSLGIPTTRALCLVTTGKYVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 312

Query: 305 GSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKY 364
           GSYQIHA+RG+EDL IVR LADY IRHHF HIENM +SE LSFSTG++D S+VDLTSNKY
Sbjct: 313 GSYQIHAARGKEDLGIVRALADYTIRHHFPHIENMTRSEGLSFSTGEQDESIVDLTSNKY 372

Query: 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTT 424
           AAW+VEVAERTASLVA WQGVGFTHGVLNTDNMS+LGLTIDYGPFGFLDAFDPS+TPNTT
Sbjct: 373 AAWSVEVAERTASLVASWQGVGFTHGVLNTDNMSVLGLTIDYGPFGFLDAFDPSYTPNTT 432

Query: 425 DLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           DLPGRRYCFANQPDIGLWNIAQF++TL +A+LI+DKEANY MER+
Sbjct: 433 DLPGRRYCFANQPDIGLWNIAQFTSTLMSAELINDKEANYAMERY 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502212|ref|XP_004161576.1| PREDICTED: UPF0061 protein AZOSEA38000-like [Cucumis sativus]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/435 (80%), Positives = 379/435 (87%), Gaps = 2/435 (0%)

Query: 36  PAYFTKSPS-CPSIACHVSTTGGGGAAQMESSASVDSVTHDLKNQRLDTETETDGGDESK 94
           PA FT  PS  P+ + H        +A  E SASVDSV   LKNQ L+ +   DGG    
Sbjct: 42  PASFTSLPSPLPAHSRHGRRKLSMDSASPEVSASVDSVAEGLKNQSLNNDDRVDGGSSIN 101

Query: 95  MTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESV 154
              K K LEDLNWD+SFVRELPGDPRTD IPREVLHACY+KV PS EV++PQLVAWSESV
Sbjct: 102 HATK-KKLEDLNWDNSFVRELPGDPRTDIIPREVLHACYSKVLPSVEVQSPQLVAWSESV 160

Query: 155 ADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEIL 214
           AD L+LDP+EFERPDFPL FSGA+PL GA PYAQCYGGHQFGMWAGQLGDGRAITLGEIL
Sbjct: 161 ADLLDLDPQEFERPDFPLLFSGASPLVGASPYAQCYGGHQFGMWAGQLGDGRAITLGEIL 220

Query: 215 NLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGK 274
           N +SERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMH LGIPTTRALCL+TTG 
Sbjct: 221 NSRSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHSLGIPTTRALCLLTTGT 280

Query: 275 FVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFR 334
           FVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRG++D  IVR LADY IRHHF 
Sbjct: 281 FVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGKDDFKIVRALADYVIRHHFP 340

Query: 335 HIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNT 394
           H+ENM+ S+S+SFSTG+ D SVVDLTSNKYAAW VEVAERTASL+A WQGVGFTHGVLNT
Sbjct: 341 HLENMSSSQSVSFSTGNTDSSVVDLTSNKYAAWTVEVAERTASLIASWQGVGFTHGVLNT 400

Query: 395 DNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAA 454
           DNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQF++TL+AA
Sbjct: 401 DNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFASTLSAA 460

Query: 455 KLIDDKEANYVMERF 469
           +LI+DKEANY MER+
Sbjct: 461 ELINDKEANYAMERY 475

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462599|ref|XP_004149028.1| PREDICTED: UPF0061 protein AZOSEA38000-like [Cucumis sativus]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/435 (80%), Positives = 379/435 (87%), Gaps = 2/435 (0%)

Query: 36  PAYFTKSPS-CPSIACHVSTTGGGGAAQMESSASVDSVTHDLKNQRLDTETETDGGDESK 94
           PA FT  PS  P+ + H        +A  E SASVDSV   LKNQ L+ +   DGG    
Sbjct: 42  PASFTSLPSPLPAHSRHGRRKLSMDSASPEVSASVDSVAEGLKNQSLNNDDRVDGGSSIN 101

Query: 95  MTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESV 154
              K K LEDLNWD+SFVRELPGDPRTD IPREVLHACY+KV PS EV++PQLVAWSESV
Sbjct: 102 HATK-KKLEDLNWDNSFVRELPGDPRTDIIPREVLHACYSKVLPSVEVQSPQLVAWSESV 160

Query: 155 ADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEIL 214
           AD L+LDP+EFERPDFPL FSGA+PL GA PYAQCYGGHQFGMWAGQLGDGRAITLGEIL
Sbjct: 161 ADLLDLDPQEFERPDFPLLFSGASPLVGASPYAQCYGGHQFGMWAGQLGDGRAITLGEIL 220

Query: 215 NLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGK 274
           N +SERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMH LGIPTTRALCL+TTG 
Sbjct: 221 NSRSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHSLGIPTTRALCLLTTGT 280

Query: 275 FVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFR 334
           FVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRG++D  IVR LADY IRHHF 
Sbjct: 281 FVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGKDDFKIVRALADYVIRHHFP 340

Query: 335 HIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNT 394
           H+ENM+ S+S+SFSTG+ D SVVDLTSNKYAAW VEVAERTASL+A WQGVGFTHGVLNT
Sbjct: 341 HLENMSSSQSVSFSTGNTDSSVVDLTSNKYAAWTVEVAERTASLIASWQGVGFTHGVLNT 400

Query: 395 DNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAA 454
           DNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQF++TL+AA
Sbjct: 401 DNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFASTLSAA 460

Query: 455 KLIDDKEANYVMERF 469
           +LI+DKEANY MER+
Sbjct: 461 ELINDKEANYAMERY 475

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544744|ref|XP_002513433.1| Selenoprotein O, putative [Ricinus communis] gi|223547341|gb|EEF48836.1| Selenoprotein O, putative [Ricinus communis]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/459 (75%), Positives = 386/459 (84%), Gaps = 19/459 (4%)

Query: 27  PRLPKFPFYPA-------YFTKSPSCPSIACHVSTTGGGGAAQM---------ESSASVD 70
           PR  K  FYP+       ++++SP  P + C V+T+   G+  M          + + VD
Sbjct: 25  PRHFKSRFYPSSSFLSSHFYSRSPH-PYLVCGVNTSSSSGSVSMDSSGSPEAASTMSVVD 83

Query: 71  SVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLH 130
           SVT+D KNQ L  +   +  + +   K   +L+DLNWDHSFVRELPGD RTD+IPR+VLH
Sbjct: 84  SVTNDFKNQSLRDDDNNNKNNTTSKVKS--SLDDLNWDHSFVRELPGDSRTDTIPRQVLH 141

Query: 131 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCY 190
           AC++KV PSAEVENPQLVAWSESVA  L+LD KEFERPDF L FSGA+ L G++PYAQCY
Sbjct: 142 ACFSKVFPSAEVENPQLVAWSESVAVLLDLDLKEFERPDFALKFSGASTLVGSLPYAQCY 201

Query: 191 GGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREF 250
           GGHQFGMWAGQLGDGRAITLGEILN KSERWELQLKGAGKTPYSRFADGLAVLRSSIREF
Sbjct: 202 GGHQFGMWAGQLGDGRAITLGEILNSKSERWELQLKGAGKTPYSRFADGLAVLRSSIREF 261

Query: 251 LCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIH 310
           LCSEAMH LGIPTTRALCLVTTGK+VTRDMFYDGNPKEEPGAIVCRVAQSFLRFGS+QIH
Sbjct: 262 LCSEAMHHLGIPTTRALCLVTTGKYVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSFQIH 321

Query: 311 ASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVE 370
           ASRG+ED  IVR LADYAIRHHF HI+NM KSESLSFS G ED S+VDLTSNKYAAW VE
Sbjct: 322 ASRGKEDFGIVRALADYAIRHHFPHIDNMTKSESLSFSMGAEDDSIVDLTSNKYAAWTVE 381

Query: 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRR 430
           VAERTASL+A WQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPS+TPNTTDLPGRR
Sbjct: 382 VAERTASLIASWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSYTPNTTDLPGRR 441

Query: 431 YCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           YCFANQPDIGLWNIAQF+ TL+ A+LI+DKEANY MER+
Sbjct: 442 YCFANQPDIGLWNIAQFTATLSEAQLINDKEANYAMERY 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445153|ref|XP_003592854.1| hypothetical protein MTR_1g116880 [Medicago truncatula] gi|355481902|gb|AES63105.1| hypothetical protein MTR_1g116880 [Medicago truncatula]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/406 (81%), Positives = 360/406 (88%), Gaps = 14/406 (3%)

Query: 65  SSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSI 124
           S+  +DSVT + KNQ L             + KK + LEDLNWD+SFVR+LP DPRTD  
Sbjct: 53  SAPLLDSVTQEFKNQSL-------------IQKKKRELEDLNWDNSFVRDLPSDPRTDPF 99

Query: 125 PREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAV 184
           PREVLHACYTKVSPS  V++PQLV WSESVA+ L+LD  EF+RPDFPLFFSGA+P  GA 
Sbjct: 100 PREVLHACYTKVSPSVSVDDPQLVVWSESVAELLDLDNNEFQRPDFPLFFSGASPFVGAF 159

Query: 185 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLR 244
           PYAQCYGGHQFGMWAGQLGDGRAITLGEILN  S+RWELQLKGAGKTPYSRFADGLAVLR
Sbjct: 160 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNSNSQRWELQLKGAGKTPYSRFADGLAVLR 219

Query: 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 304
           SS+REFLCSEAMH LGIPTTRAL LVTTGK VTRDMFYDGNPKEE GAIVCRVAQSFLRF
Sbjct: 220 SSVREFLCSEAMHHLGIPTTRALSLVTTGKLVTRDMFYDGNPKEEQGAIVCRVAQSFLRF 279

Query: 305 GSYQIHASRG-QEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNK 363
           GSYQ+HASRG  EDL+IVR LADYAI+HHF HIENM+KSESLSFSTGDEDHSVVDLTSNK
Sbjct: 280 GSYQLHASRGSNEDLEIVRVLADYAIKHHFPHIENMSKSESLSFSTGDEDHSVVDLTSNK 339

Query: 364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNT 423
           YAAWAVE+AERTAS++A+WQGVGFTHGV+NTDNMSILGLTIDYGPFGFLDAFDP FTPNT
Sbjct: 340 YAAWAVEIAERTASMIARWQGVGFTHGVMNTDNMSILGLTIDYGPFGFLDAFDPKFTPNT 399

Query: 424 TDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           TDLPGRRYCFANQPDIGLWN+AQF+TTL+AA LI+DKEANY +ER+
Sbjct: 400 TDLPGRRYCFANQPDIGLWNLAQFTTTLSAAHLINDKEANYALERY 445

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13430492|gb|AAK25868.1|AF360158_1 unknown protein [Arabidopsis thaliana]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/405 (80%), Positives = 358/405 (88%), Gaps = 8/405 (1%)

Query: 65  SSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSI 124
           + +S DS+  DL+NQ L        G   +  K  K LED NWDHSFV+ELPGDPRTD I
Sbjct: 15  TDSSADSLAKDLQNQSL--------GAVDEGVKIKKKLEDFNWDHSFVKELPGDPRTDVI 66

Query: 125 PREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAV 184
            REVLHACY+KVSPS EV++PQLVAWS SVA+ L+LDPKEFERPDFPL  SGA PL GA+
Sbjct: 67  SREVLHACYSKVSPSVEVDDPQLVAWSVSVAELLDLDPKEFERPDFPLMLSGAKPLPGAM 126

Query: 185 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLR 244
            YAQCYGGHQFGMWAGQLGDGRAITLGE+LN K ERWELQLKGAG+TPYSRFADGLAVLR
Sbjct: 127 SYAQCYGGHQFGMWAGQLGDGRAITLGEVLNSKGERWELQLKGAGRTPYSRFADGLAVLR 186

Query: 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 304
           SSIREFLCSE MH LGIPTTRALCL+TTG+ VTRDMFYDGNPKEEPGAIVCRV+QSFLRF
Sbjct: 187 SSIREFLCSETMHCLGIPTTRALCLLTTGQNVTRDMFYDGNPKEEPGAIVCRVSQSFLRF 246

Query: 305 GSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKY 364
           GSYQIHASRG+EDLDIVR LADYAI+HHF HIE+M++S+SLSF TGDED SVVDLTSNKY
Sbjct: 247 GSYQIHASRGKEDLDIVRKLADYAIKHHFPHIESMDRSDSLSFKTGDEDDSVVDLTSNKY 306

Query: 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTT 424
           AAW VE+AERTA+LVA+WQGVGFTHGVLNTDNMSILG TIDYGPFGFLDAFDPS+TPNTT
Sbjct: 307 AAWIVEIAERTATLVARWQGVGFTHGVLNTDNMSILGQTIDYGPFGFLDAFDPSYTPNTT 366

Query: 425 DLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           DLPGRRYCFANQPDIGLWNIAQFS TLA A+LI+ KEANY MER+
Sbjct: 367 DLPGRRYCFANQPDIGLWNIAQFSKTLAVAQLINQKEANYAMERY 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971098|dbj|BAD44241.1| unnamed protein product [Arabidopsis thaliana]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/405 (80%), Positives = 358/405 (88%), Gaps = 8/405 (1%)

Query: 65  SSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSI 124
           + +S DS+  DL+NQ L        G   +  K  K LED NWDHSFV+ELPGDPRTD I
Sbjct: 60  TDSSADSLAKDLQNQSL--------GAVDEGVKIKKKLEDFNWDHSFVKELPGDPRTDVI 111

Query: 125 PREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAV 184
            REVLHACY+KVSPS EV++PQLVAWS SVA+ L+LDPKEFERPDFPL  SGA PL GA+
Sbjct: 112 SREVLHACYSKVSPSVEVDDPQLVAWSVSVAELLDLDPKEFERPDFPLMLSGAKPLPGAM 171

Query: 185 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLR 244
            YAQCYGGHQFGMWAGQLGDGRAITLGE+LN K ERWELQLKGAG+TPYSRFADGLAVLR
Sbjct: 172 SYAQCYGGHQFGMWAGQLGDGRAITLGEVLNSKGERWELQLKGAGRTPYSRFADGLAVLR 231

Query: 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 304
           SSIREFLCSE MH LGIPTTRALCL+TTG+ VTRDMFYDGNPKEEPGAIVCRV+QSFLRF
Sbjct: 232 SSIREFLCSETMHCLGIPTTRALCLLTTGQNVTRDMFYDGNPKEEPGAIVCRVSQSFLRF 291

Query: 305 GSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKY 364
           GSYQIHASRG+EDLDIVR LADYAI+HHF HIE+M++S+SLSF TGDED SVVDLTSNKY
Sbjct: 292 GSYQIHASRGKEDLDIVRKLADYAIKHHFPHIESMDRSDSLSFKTGDEDDSVVDLTSNKY 351

Query: 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTT 424
           AAW VE+AERTA+LVA+WQGVGFTHGVLNTDNMSILG TIDYGPFGFLDAFDPS+TPNTT
Sbjct: 352 AAWIVEIAERTATLVARWQGVGFTHGVLNTDNMSILGQTIDYGPFGFLDAFDPSYTPNTT 411

Query: 425 DLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           DLPGRRYCFANQPDIGLWNIAQFS TLA A+LI+ KEANY MER+
Sbjct: 412 DLPGRRYCFANQPDIGLWNIAQFSKTLAVAQLINQKEANYAMERY 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684227|ref|NP_196807.2| uncharacterized protein [Arabidopsis thaliana] gi|24030204|gb|AAN41282.1| unknown protein [Arabidopsis thaliana] gi|332004460|gb|AED91843.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/405 (80%), Positives = 358/405 (88%), Gaps = 8/405 (1%)

Query: 65  SSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSI 124
           + +S DS+  DL+NQ L        G   +  K  K LED NWDHSFV+ELPGDPRTD I
Sbjct: 63  TDSSADSLAKDLQNQSL--------GAVDEGVKIKKKLEDFNWDHSFVKELPGDPRTDVI 114

Query: 125 PREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAV 184
            REVLHACY+KVSPS EV++PQLVAWS SVA+ L+LDPKEFERPDFPL  SGA PL GA+
Sbjct: 115 SREVLHACYSKVSPSVEVDDPQLVAWSVSVAELLDLDPKEFERPDFPLMLSGAKPLPGAM 174

Query: 185 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLR 244
            YAQCYGGHQFGMWAGQLGDGRAITLGE+LN K ERWELQLKGAG+TPYSRFADGLAVLR
Sbjct: 175 SYAQCYGGHQFGMWAGQLGDGRAITLGEVLNSKGERWELQLKGAGRTPYSRFADGLAVLR 234

Query: 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 304
           SSIREFLCSE MH LGIPTTRALCL+TTG+ VTRDMFYDGNPKEEPGAIVCRV+QSFLRF
Sbjct: 235 SSIREFLCSETMHCLGIPTTRALCLLTTGQNVTRDMFYDGNPKEEPGAIVCRVSQSFLRF 294

Query: 305 GSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKY 364
           GSYQIHASRG+EDLDIVR LADYAI+HHF HIE+M++S+SLSF TGDED SVVDLTSNKY
Sbjct: 295 GSYQIHASRGKEDLDIVRKLADYAIKHHFPHIESMDRSDSLSFKTGDEDDSVVDLTSNKY 354

Query: 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTT 424
           AAW VE+AERTA+LVA+WQGVGFTHGVLNTDNMSILG TIDYGPFGFLDAFDPS+TPNTT
Sbjct: 355 AAWIVEIAERTATLVARWQGVGFTHGVLNTDNMSILGQTIDYGPFGFLDAFDPSYTPNTT 414

Query: 425 DLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469
           DLPGRRYCFANQPDIGLWNIAQFS TLA A+LI+ KEANY MER+
Sbjct: 415 DLPGRRYCFANQPDIGLWNIAQFSKTLAVAQLINQKEANYAMERY 459

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
TAIR|locus:2182265	633	AT5G13030 "AT5G13030" [Arabido	0.923	0.685	0.762	3.8e-181
MGI|MGI:1919007	667	1300018J18Rik "RIKEN cDNA 1300	0.710	0.500	0.490	7.3e-75
POMBASE|SPAC20G4.05c	568	SPAC20G4.05c "UPF0061 family p	0.474	0.392	0.418	1.8e-68
UNIPROTKB|Q87VB1	487	PSPTO_5028 "UPF0061 protein PS	0.455	0.439	0.441	7.7e-64
UNIPROTKB|Q60B95	504	MCA0585 "UPF0061 protein MCA05	0.4	0.373	0.457	3.3e-63
UNIPROTKB|Q5LQK9	472	SPO2480 "UPF0061 protein SPO24	0.402	0.400	0.477	4.2e-61
TIGR_CMR|SPO_2480	472	SPO_2480 "conserved hypothetic	0.402	0.400	0.477	4.2e-61
UNIPROTKB|Q81YI0	488	BAS3307 "UPF0061 protein BA_35	0.408	0.393	0.449	1.8e-60
TIGR_CMR|BA_3567	488	BA_3567 "conserved hypothetica	0.408	0.393	0.449	1.8e-60
UNIPROTKB|Q47WD4	501	CPS_4238 "UPF0061 protein CPS_	0.687	0.644	0.383	7e-54

TAIR|locus:2182265 AT5G13030 "AT5G13030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1758 (623.9 bits), Expect = 3.8e-181, P = 3.8e-181
 Identities = 338/443 (76%), Positives = 375/443 (84%)

Query:    28 RLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQME-SSASVDSVTHDLKNQRLDTETE 86
             ++P  P  P  F  SPS  S    + ++    ++    + +S DS+  DL+NQ L     
Sbjct:    25 KVPFCPSLPRQFRLSPSRSSSFRRMESSPASSSSPTPVTDSSADSLAKDLQNQSLGA--- 81

Query:    87 TDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQ 146
              D G   K+ KKL   ED NWDHSFV+ELPGDPRTD I REVLHACY+KVSPS EV++PQ
Sbjct:    82 VDEG--VKIKKKL---EDFNWDHSFVKELPGDPRTDVISREVLHACYSKVSPSVEVDDPQ 136

Query:   147 LVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGR 206
             LVAWS SVA+ L+LDPKEFERPDFPL  SGA PL GA+ YAQCYGGHQFGMWAGQLGDGR
Sbjct:   137 LVAWSVSVAELLDLDPKEFERPDFPLMLSGAKPLPGAMSYAQCYGGHQFGMWAGQLGDGR 196

Query:   207 AITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRA 266
             AITLGE+LN K ERWELQLKGAG+TPYSRFADGLAVLRSSIREFLCSE MH LGIPTTRA
Sbjct:   197 AITLGEVLNSKGERWELQLKGAGRTPYSRFADGLAVLRSSIREFLCSETMHCLGIPTTRA 256

Query:   267 LCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLAD 326
             LCL+TTG+ VTRDMFYDGNPKEEPGAIVCRV+QSFLRFGSYQIHASRG+EDLDIVR LAD
Sbjct:   257 LCLLTTGQNVTRDMFYDGNPKEEPGAIVCRVSQSFLRFGSYQIHASRGKEDLDIVRKLAD 316

Query:   327 YAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVG 386
             YAI+HHF HIE+M++S+SLSF TGDED SVVDLTSNKYAAW VE+AERTA+LVA+WQGVG
Sbjct:   317 YAIKHHFPHIESMDRSDSLSFKTGDEDDSVVDLTSNKYAAWIVEIAERTATLVARWQGVG 376

Query:   387 FTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQ 446
             FTHGVLNTDNMSILG TIDYGPFGFLDAFDPS+TPNTTDLPGRRYCFANQPDIGLWNIAQ
Sbjct:   377 FTHGVLNTDNMSILGQTIDYGPFGFLDAFDPSYTPNTTDLPGRRYCFANQPDIGLWNIAQ 436

Query:   447 FSTTLAAAKLIDDKEANYVMERF 469
             FS TLA A+LI+ KEANY MER+
Sbjct:   437 FSKTLAVAQLINQKEANYAMERY 459

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

MGI|MGI:1919007 1300018J18Rik "RIKEN cDNA 1300018J18 gene" [Mus musculus (taxid:10090)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 180/367 (49%), Positives = 225/367 (61%)

Query:   102 LEDLNWDHSFVRELPGD-PRT---DSI--PREVLHACYTKVSPSAEVENPQLVAWSESVA 155
             L  L +D+  +RELP + P     DS+  PR V  AC+++  P A +  P+LVA SE   
Sbjct:    46 LAGLRFDNRALRELPVETPPPGPEDSLATPRPVPGACFSRARP-APLRRPRLVALSEPAL 104

Query:   156 DSLELDP-KEFE-RPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEI 213
               L L+  +E E   +  LFFSG   L G  P A CY GHQFG +AGQLGDG A+ LGE+
Sbjct:   105 ALLGLEASEEAEVEAEAALFFSGNALLPGTEPAAHCYCGHQFGQFAGQLGDGAAMYLGEV 164

Query:   214 LNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG 273
                  ERWELQLKGAG TP+SR ADG  VLRSSIREFLCSEAM  LGIPTTRA   VT+ 
Sbjct:   165 CTAAGERWELQLKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSE 224

Query:   274 KFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQI------HASRGQEDL--DIVRT-L 324
               V RD+FYDGNPK E   +V R+A +F+RFGS++I      H  R    +  D +R  L
Sbjct:   225 STVMRDVFYDGNPKYEKCTVVLRIAPTFIRFGSFEIFKPPDEHTGRAGPSVGRDDIRVQL 284

Query:   325 ADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQG 384
              DY I   +  I+  +        T D D+    +  N  AA+  EV +RTA +VA+WQ 
Sbjct:   285 LDYVISSFYPEIQAAH--------TCDTDN----IQRN--AAFFREVTQRTARMVAEWQC 330

Query:   385 VGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNI 444
             VGF HGVLNTDNMSI+GLTIDYGPFGFLD +DP    N +D  GR Y ++ QP +  WN+
Sbjct:   331 VGFCHGVLNTDNMSIVGLTIDYGPFGFLDRYDPDHICNASDNAGR-YTYSKQPQVCKWNL 389

Query:   445 AQFSTTL 451
              + +  L
Sbjct:   390 QKLAEAL 396

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC20G4.05c SPAC20G4.05c "UPF0061 family protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 433 (157.5 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
 Identities = 105/251 (41%), Positives = 149/251 (59%)

Query:    95 MTKKLKALEDLNWDHSFVRELPGDPRTDSIPR------EVLHA--------CYTKVSPSA 140
             M+KKLK   DL    +F   LP DP   ++         +LH          +T ++PS 
Sbjct:     1 MSKKLK---DLPVSSTFTSNLPPDPLVPTVQAMKKADDRILHVPRFVEGGGLFTYLTPSL 57

Query:   141 EVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGAT-PLAGAVPYAQCYGGHQFGMWA 199
             +  N QL+A+S S   SL L+  E +   F     G+   +    P+AQCYGG+QFG WA
Sbjct:    58 KA-NSQLLAYSPSSVKSLGLEESETQTEAFQQLVVGSNVDVNKCCPWAQCYGGYQFGDWA 116

Query:   200 GQLGDGRAITLGEILNLKS-ERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHF 258
             GQLGDGR ++L E+ N ++ +R+E+Q+KGAG+TPYSRFADG AVLRSSIRE+LC EA++ 
Sbjct:   117 GQLGDGRVVSLCELTNPETGKRFEIQVKGAGRTPYSRFADGKAVLRSSIREYLCCEALYA 176

Query:   259 LGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDL 318
             LGIPTT+AL +      V +          EP A+VCR+A S++R G++ +     Q  +
Sbjct:   177 LGIPTTQALAISNLEGVVAQ------RETVEPCAVVCRMAPSWIRIGTFDLQGINNQ--I 228

Query:   319 DIVRTLADYAI 329
             + +R LADY +
Sbjct:   229 ESLRKLADYCL 239

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q87VB1 PSPTO_5028 "UPF0061 protein PSPTO_5028" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 424 (154.3 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 106/240 (44%), Positives = 144/240 (60%)

Query:    99 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSL 158
             +KAL++L +D+ F R   GD            A  T V P   ++ P+LV  SES    L
Sbjct:     1 MKALDELVFDNRFARL--GD------------AFSTHVLPEP-IDAPRLVVASESALALL 45

Query:   159 ELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKS 218
             +L P++ E P F   FSG    A A P A  Y GHQFG +  +LGDGR + LGE+ N   
Sbjct:    46 DLAPEQSELPLFAEIFSGHKLWAEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAG 105

Query:   219 ERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTR 278
             E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RA C+V++   V R
Sbjct:   106 EHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRAACVVSSNTPVWR 165

Query:   279 DMFYDGNPKEEPGAIVCRVAQSFLRFGSYQ-IHASRGQEDLDIVRTLADYAIRHHFRHIE 337
             +       K+E  A+V R+AQS +RFGS + +  ++  E L   +TLA++ +  H+ H +
Sbjct:   166 E-------KQEYAAMVLRLAQSHVRFGSLEYLFYTKQPEHL---KTLAEHVLTMHYPHCQ 215

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60B95 MCA0585 "UPF0061 protein MCA0585" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 406 (148.0 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 91/199 (45%), Positives = 118/199 (59%)

Query:   139 SAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMW 198
             +  +  P++V ++ ++A  L   P+    P      +G  P  G    A  Y GHQFG W
Sbjct:    37 ATSLPEPRMVHFNAALAGELGFGPEA--GPQLLEILAGNRPWPGYASSASVYAGHQFGAW 94

Query:   199 AGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHF 258
               QLGDGRA+ + E+     ER ELQLKGAG TPYSR  DG AVLRSSIRE+L SEAMH 
Sbjct:    95 VPQLGDGRALLIAEVRTPARERVELQLKGAGPTPYSRGLDGRAVLRSSIREYLASEAMHA 154

Query:   259 LGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDL 318
             LG+PTTR L LV + + V R+         E  A+VCR A SF+RFG ++  A RGQ + 
Sbjct:   155 LGVPTTRCLSLVASPQPVARETV-------ESAAVVCRAAASFVRFGQFEYFAGRGQTE- 206

Query:   319 DIVRTLADYAIRHHFRHIE 337
              + R LAD+ I  HF H++
Sbjct:   207 PMAR-LADHVIAEHFPHLQ 224

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LQK9 SPO2480 "UPF0061 protein SPO2480" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 400 (145.9 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 96/201 (47%), Positives = 124/201 (61%)

Query:   133 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGG 192
             YT  +P   V  P+LVA++  +A  L + P E E     +F   A P  GA P AQ Y G
Sbjct:    19 YTAQAPQP-VRAPRLVAFNADLARLLGIAPGEVEEMA-QVFAGNAVP-QGAEPLAQLYSG 75

Query:   193 HQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLC 252
             HQFG +  QLGDGRAI LGE+L     R ++QLKGAG+TPYSR  DG A L   +RE++ 
Sbjct:    76 HQFGNYNPQLGDGRAILLGEVLGSDGIRRDIQLKGAGRTPYSRGGDGRAWLGPVLREYVV 135

Query:   253 SEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHAS 312
             SEAM  LGIPTTRAL  V TG+ V R+          PGA++ RVAQS LR G++Q+ A+
Sbjct:   136 SEAMAALGIPTTRALAAVETGETVRRESAL-------PGAVLTRVAQSHLRVGTFQVFAA 188

Query:   313 RGQEDLDIVRTLADYAIRHHF 333
             RG+  +  ++ L DYAI  H+
Sbjct:   189 RGE--IAHLKRLTDYAIARHY 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2480 SPO_2480 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 400 (145.9 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 96/201 (47%), Positives = 124/201 (61%)

Query:   133 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGG 192
             YT  +P   V  P+LVA++  +A  L + P E E     +F   A P  GA P AQ Y G
Sbjct:    19 YTAQAPQP-VRAPRLVAFNADLARLLGIAPGEVEEMA-QVFAGNAVP-QGAEPLAQLYSG 75

Query:   193 HQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLC 252
             HQFG +  QLGDGRAI LGE+L     R ++QLKGAG+TPYSR  DG A L   +RE++ 
Sbjct:    76 HQFGNYNPQLGDGRAILLGEVLGSDGIRRDIQLKGAGRTPYSRGGDGRAWLGPVLREYVV 135

Query:   253 SEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHAS 312
             SEAM  LGIPTTRAL  V TG+ V R+          PGA++ RVAQS LR G++Q+ A+
Sbjct:   136 SEAMAALGIPTTRALAAVETGETVRRESAL-------PGAVLTRVAQSHLRVGTFQVFAA 188

Query:   313 RGQEDLDIVRTLADYAIRHHF 333
             RG+  +  ++ L DYAI  H+
Sbjct:   189 RGE--IAHLKRLTDYAIARHY 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81YI0 BAS3307 "UPF0061 protein BA_3567/GBAA_3567/BAS3307" [Bacillus anthracis (taxid:1392)]

 Score = 404 (147.3 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 93/207 (44%), Positives = 133/207 (64%)

Query:   133 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERP-DFPLFFSGATPLAGAVPYAQCYG 191
             YT++ P+  V +P+LV  + S+A SL  +P+E ++  +  +F   A P  GA P AQ Y 
Sbjct:    23 YTEIPPTP-VSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALP-EGAHPLAQAYA 80

Query:   192 GHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFL 251
             GHQFG +   LGDGRA+ +GE +    +R+++QLKG+G TPYSR  DG A L   +RE++
Sbjct:    81 GHQFGHF-NMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYI 139

Query:   252 CSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHA 311
              SEAM+ L IPTTR+L +VTTG+   R+        + PGAI+ RVA S +R G++Q  A
Sbjct:   140 ISEAMYALDIPTTRSLAVVTTGEPTYRET-------KLPGAILTRVASSHIRVGTFQYAA 192

Query:   312 SRGQ-EDLDIVRTLADYAIRHHFRHIE 337
             +RG  EDL   ++LADY I+ H+  IE
Sbjct:   193 ARGSIEDL---QSLADYTIKRHYPEIE 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3567 BA_3567 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 404 (147.3 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 93/207 (44%), Positives = 133/207 (64%)

Query:   133 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERP-DFPLFFSGATPLAGAVPYAQCYG 191
             YT++ P+  V +P+LV  + S+A SL  +P+E ++  +  +F   A P  GA P AQ Y 
Sbjct:    23 YTEIPPTP-VSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALP-EGAHPLAQAYA 80

Query:   192 GHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFL 251
             GHQFG +   LGDGRA+ +GE +    +R+++QLKG+G TPYSR  DG A L   +RE++
Sbjct:    81 GHQFGHF-NMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYI 139

Query:   252 CSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHA 311
              SEAM+ L IPTTR+L +VTTG+   R+        + PGAI+ RVA S +R G++Q  A
Sbjct:   140 ISEAMYALDIPTTRSLAVVTTGEPTYRET-------KLPGAILTRVASSHIRVGTFQYAA 192

Query:   312 SRGQ-EDLDIVRTLADYAIRHHFRHIE 337
             +RG  EDL   ++LADY I+ H+  IE
Sbjct:   193 ARGSIEDL---QSLADYTIKRHYPEIE 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47WD4 CPS_4238 "UPF0061 protein CPS_4238" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 131/342 (38%), Positives = 194/342 (56%)

Query:   127 EVLHACYTKVSPSAEVENPQLVAWSESVADSLELD-PKEFERPDFPLFFSGATPLAGAVP 185
             + L   +++ +  A V  P L+ W+E +A +L +   K+ +      +FSG   + G+ P
Sbjct:    10 QALGESFSQQTLPAPVGQPSLLLWNEPLAKALTIPFTKDNDAELLSQYFSGNQLIEGSKP 69

Query:   186 YAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRS 245
              AQ Y GHQFG +  QLGDGRA  LG+I + + +RW++QLKG+G + +SR  DG   L  
Sbjct:    70 VAQAYSGHQFGHFNPQLGDGRAHLLGDIADTQGQRWDIQLKGSGVSDFSRQGDGRCALGP 129

Query:   246 SIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFG 305
             ++RE++ SEAM  LG+PTTR L +VTTG+ V R+  YDG       A+V R+A S +R G
Sbjct:   130 ALREYIMSEAMFALGVPTTRCLAVVTTGENVYRERPYDG-------AVVTRIAASHIRVG 182

Query:   306 SYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVD--LTSNK 363
             ++Q  A+RG  D D ++ L +YAI  HF  +   N SE+   S+ + D    D  ++S +
Sbjct:   183 TFQYFAARG--DTDSLKKLTNYAINRHFPELI-ANSSEN---SSDNSDALKADNVISSQQ 236

Query:   364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNT 423
                +   V  +   LV  W  VGF HGV+NTDN +I G TIDYGP   ++A+ P    ++
Sbjct:   237 VLEFFSAVLSKQIPLVLSWLRVGFIHGVMNTDNTTISGETIDYGPCAMMNAYHPETVFSS 296

Query:   424 TDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYV 465
              D    RY F  Q  I  WN+ + + TL    L+D  E + V
Sbjct:   297 IDR-NSRYAFGKQISIMQWNMTRLAETLLP--LVDSDEDDAV 335

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q11T54	Y2147_CYTH3	No assigned EC number	0.5058	0.6723	0.6135	yes	no
Q87A39	Y1992_XYLFT	No assigned EC number	0.5172	0.6893	0.6242	yes	no
Q4UVM9	Y1831_XANC8	No assigned EC number	0.5229	0.6893	0.6254	yes	no
B2SHR2	Y396_XANOP	No assigned EC number	0.5099	0.6957	0.6312	yes	no
Q3BSE3	Y2589_XANC5	No assigned EC number	0.5013	0.7234	0.6563	yes	no
B0RS12	Y1894_XANCB	No assigned EC number	0.5229	0.6893	0.6254	yes	no
Q2P2A9	Y2563_XANOM	No assigned EC number	0.5099	0.6957	0.6312	yes	no
Q8P8F8	Y2284_XANCP	No assigned EC number	0.5229	0.6893	0.6254	yes	no
Q5GZ99	Y2718_XANOR	No assigned EC number	0.5099	0.6957	0.6312	yes	no
Q8PJY5	Y2392_XANAC	No assigned EC number	0.5201	0.6893	0.6254	yes	no
C1AED7	Y3822_GEMAT	No assigned EC number	0.5470	0.6978	0.6283	yes	no
Q7UKT5	Y9953_RHOBA	No assigned EC number	0.5214	0.7042	0.6129	yes	no
Q5NYD9	Y3800_AROAE	No assigned EC number	0.5564	0.6957	0.6252	yes	no
Q9PA99	Y2619_XYLFA	No assigned EC number	0.5143	0.6893	0.6242	yes	no
A1K5T6	Y1574_AZOSB	No assigned EC number	0.5714	0.6957	0.6300	yes	no
Q1H0D2	Y1788_METFK	No assigned EC number	0.5441	0.7	0.6351	yes	no
C4LAV8	Y683_TOLAT	No assigned EC number	0.5389	0.6893	0.6242	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_I000130	hypothetical protein (646 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.89120002	Predicted protein (235 aa)	•								0.534
	eugene3.139720002	Predicted protein (128 aa)	•								0.533
	gw1.XII.1071.1	hypothetical protein (100 aa)	•								0.488
	gw1.19427.3.1	hypothetical protein (361 aa)							•		0.402
	eugene3.104060001	Predicted protein (433 aa)	•								0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
PRK00029	487	PRK00029, PRK00029, hypothetical protein; Validate	1e-164
COG0397	488	COG0397, COG0397, Uncharacterized conserved protei	1e-143
pfam02696	487	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0	8e-95

>gnl|CDD|234583 PRK00029, PRK00029, hypothetical protein; Validated

 Score =  473 bits (1219), Expect = e-164
 Identities = 169/372 (45%), Positives = 214/372 (57%), Gaps = 48/372 (12%)

Query: 98  KLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADS 157
            +  L  L +D+ F R  P              A YT+V+P      P+L   ++ +A  
Sbjct: 1   TMNPLLALPFDNRFARLGP--------------AFYTRVAP-TPFPAPRLRFRNDELAAL 45

Query: 158 LELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLK 217
           L LDP+E + P+F   F G   L G  P A  Y GHQFG++  QLGDGR I LGE+ +  
Sbjct: 46  LGLDPEELDDPEFAEVFGGNALLPGMEPLAMVYHGHQFGVYNPQLGDGRGILLGEVRDAD 105

Query: 218 SERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVT 277
              ++LQLKGAG+TPYSR  DG AVLRSSIRE+L SEAMH LGIPTTRAL LV TG+ V 
Sbjct: 106 GRLYDLQLKGAGRTPYSRMGDGRAVLRSSIREYLASEAMHALGIPTTRALSLVETGEPVY 165

Query: 278 RDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIE 337
           R+         E GA++ RVA S +RFG+++  A RG  +L  +R LADY I  H+  + 
Sbjct: 166 RE-------SPERGAVLTRVAPSHIRFGTFERFAYRGDPEL--LRQLADYVIARHYPELA 216

Query: 338 NMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNM 397
           +                       + Y A   EV ERTA L+AQWQ VGF HGV+NTDNM
Sbjct: 217 D---------------------AEDPYLALFAEVVERTARLIAQWQAVGFVHGVMNTDNM 255

Query: 398 SILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLI 457
           SILG TIDYGP+GFLD +DP FT N +D  G RY F NQP I LWN+A+ +  L    LI
Sbjct: 256 SILGETIDYGPYGFLDDYDPGFTCNHSDHQG-RYAFGNQPAIALWNLARLAQALLP--LI 312

Query: 458 DDKEANYVMERF 469
             +     ++RF
Sbjct: 313 AVEALQAALDRF 324

Length = 487

>gnl|CDD|223474 COG0397, COG0397, Uncharacterized conserved protein [Function unknown]

 Score =  419 bits (1080), Expect = e-143
 Identities = 156/368 (42%), Positives = 200/368 (54%), Gaps = 47/368 (12%)

Query: 102 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELD 161
              L +D  F                     YT V+P A   NP+L   ++ +A +L LD
Sbjct: 5   QAALKFDPRFASLGG--------------EFYTPVTP-APFPNPRLRWRNDRLAATLGLD 49

Query: 162 PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERW 221
           P   +   F   F G   L GA P A  Y GHQFG++  QLGDGR   LGE+     E +
Sbjct: 50  PSLLDDEAFAEVFGGFQVLNGAPPLAMRYSGHQFGVYNPQLGDGRGFLLGELRGADGELF 109

Query: 222 ELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMF 281
           ++QLKGAG+TPYSR  DG AVLRSSIRE+L SEA+H LGIPTTRAL LV TG+ V R+  
Sbjct: 110 DIQLKGAGRTPYSRGGDGRAVLRSSIREYLASEALHALGIPTTRALSLVETGEPVQRED- 168

Query: 282 YDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNK 341
                 EEP A++ R+A S +RFG+++  A R + DL  +R LAD+ I H+F  + + ++
Sbjct: 169 ------EEPSAVLTRLAPSHIRFGTFERFAYRDRRDL--LRQLADHVIEHYFPDLADESE 220

Query: 342 SESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG 401
                                 YAA    V  R+A LVA+W   GF HGVLNTDNMSI G
Sbjct: 221 --------------------RPYAALFRAVVSRSARLVARWMAAGFVHGVLNTDNMSITG 260

Query: 402 LTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKE 461
            T DYGPF FLD +DP+F  N  D  G RY F NQP+I  WN+ + +  L+   LID   
Sbjct: 261 ETFDYGPFAFLDRYDPNFVANHFDHAG-RYSFGNQPEIAFWNLQRLAGALSP--LIDQAA 317

Query: 462 ANYVMERF 469
               +  F
Sbjct: 318 LEAALNSF 325

Length = 488

>gnl|CDD|217189 pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family

 Score =  294 bits (754), Expect = 8e-95
 Identities = 139/334 (41%), Positives = 180/334 (53%), Gaps = 28/334 (8%)

Query: 121 TDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL 180
           T     E L          A     +L   ++ +A  L L+P + +  +F         L
Sbjct: 7   TYEPALESLGYEAFDPVSLATFPEHRLRFRNDRLAPMLGLEPSQLKDNNFVEAVQDQEGL 66

Query: 181 AGAV--PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFAD 238
              V  P A  Y G+QFG +A QLGDGR   LG++  +  E ++  LKGAG+TPYSR  D
Sbjct: 67  LHGVRPPLALVYSGYQFGEYAPQLGDGRGFLLGQVRLVDGELFDWGLKGAGQTPYSRGGD 126

Query: 239 GLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVA 298
           G AVLRS IRE L SEA+H LGIPTTRAL LV TG      ++    P  EP A++ R A
Sbjct: 127 GRAVLRSGIREVLASEALHRLGIPTTRALSLVETGD----SLWRRDEP--EPAAVMIRFA 180

Query: 299 QSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVD 358
            S +RFG+++    R     + +  L D+ I  ++  +     S S S    DED     
Sbjct: 181 PSHIRFGTFERFHYR--HQTEQIAQLLDHVIVTYYPEV-----SGSNS---DDED----- 225

Query: 359 LTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPS 418
               KY A+   V ER A LVAQWQ  GF HGVLNTDNMSI GLT DYGPFGFLD ++P+
Sbjct: 226 ----KYIAFFRVVVERVAKLVAQWQAAGFAHGVLNTDNMSITGLTFDYGPFGFLDTYEPN 281

Query: 419 FTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLA 452
           F  N  D  G RY F NQP +  WN+ + + +L+
Sbjct: 282 FIANHFDYGG-RYSFGNQPAVCRWNLQRLAVSLS 314

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
PRK00029	487	hypothetical protein; Validated	100.0
COG0397	488	Uncharacterized conserved protein [Function unknow	100.0
PF02696	487	UPF0061: Uncharacterized ACR, YdiU/UPF0061 family;	100.0
KOG2542	500	consensus Uncharacterized conserved protein (YdiU	100.0
KOG2542	500	consensus Uncharacterized conserved protein (YdiU	97.79
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	96.79
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	95.71
KOG3087	229	consensus Serine/threonine protein kinase [General	90.26
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	85.03
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	81.03
PRK09902	216	hypothetical protein; Provisional	80.06

>PRK00029 hypothetical protein; Validated

Probab=100.00  E-value=2.8e-139  Score=1091.84  Aligned_cols=320  Identities=52%  Similarity=0.870  Sum_probs=307.1

Q ss_pred             ccCcccccccccCCCCCCCCCCCccccCcceEecCCCCCCCCCeEEeecHHHHHHCCCCCCCCCCCChhhhccCCCCCCC
Q 012140          103 EDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAG  182 (470)
Q Consensus       103 ~~l~~~n~~~~~lp~d~~~~~~~R~v~~~~ys~v~P~~~~~~P~lv~~n~~la~~LGLd~~~~~~~~~~~~fsGn~~~~g  182 (470)
                      ..++|+|+|.+.              ++.||++|.|++ +++|+||++|+++|++||||++++++++++++|+||.+++|
T Consensus         6 ~~~~~~~~~~~l--------------~~~~~~~v~p~~-~~~p~l~~~n~~la~~Lgld~~~~~~~~~~~~~sG~~~~~g   70 (487)
T PRK00029          6 LALPFDNRFARL--------------GPAFYTRVAPTP-FPAPRLRFRNDELAALLGLDPEELDDPEFAEVFGGNALLPG   70 (487)
T ss_pred             ccCCCCCCHhhc--------------CccceeecCCcc-CCCCEEEEeCHHHHHHcCCCchhcCCHHHHHHhcCCCCCCC
Confidence            445688887653              359999999995 99999999999999999999998899999999999999999


Q ss_pred             CchhhhhhccCCCCCCCCcCCCcceeeeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCC
Q 012140          183 AVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIP  262 (470)
Q Consensus       183 ~~P~A~~YaGHQFG~fagqLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIP  262 (470)
                      +.|+||||+|||||+|||||||||||+|||+++++|++|||||||||+|||||+|||||||||||||||||||||+||||
T Consensus        71 ~~P~A~~YaGHQFG~~~pqLGDGRailLGEv~~~~g~~~dlqLKGsG~TPySR~gDGRAvLrssiREyL~SEAMhaLGIP  150 (487)
T PRK00029         71 MEPLAMVYHGHQFGVYNPQLGDGRGILLGEVRDADGRLYDLQLKGAGRTPYSRMGDGRAVLRSSIREYLASEAMHALGIP  150 (487)
T ss_pred             cchHHHHHhcccCCCCCCCCCCcceEEEEEEECCCCCEEEEeccCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCcccccccc
Q 012140          263 TTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKS  342 (470)
Q Consensus       263 TTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~  342 (470)
                      ||||||||+||++|+|+       +.||||||||||+|||||||||+|+++  ++.+.|++|+||||++|||++.+    
T Consensus       151 TTRaLalv~tge~V~R~-------~~e~gAvl~RvA~ShiRfGtFe~~a~~--~~~~~l~~L~dy~I~~hyP~~~~----  217 (487)
T PRK00029        151 TTRALSLVETGEPVYRE-------SPERGAVLTRVAPSHIRFGTFERFAYR--GDPELLRQLADYVIARHYPELAD----  217 (487)
T ss_pred             ccceEEEEecCCceecC-------CCCceeEEEEecCccccceeehhhhhc--CCHHHHHHHHHHHHHHHCccccc----
Confidence            99999999999999999       699999999999999999999999999  68999999999999999999976    


Q ss_pred             ccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccC
Q 012140          343 ESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPN  422 (470)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n  422 (470)
                                       .+++|++||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+||||
T Consensus       218 -----------------~~~~y~~~~~~Vv~rtA~lvA~Wq~vGFvHGVmNTDNmsI~GeTiDYGP~aFmd~ydp~~v~n  280 (487)
T PRK00029        218 -----------------AEDPYLALFAEVVERTARLIAQWQAVGFVHGVMNTDNMSILGETIDYGPYGFLDDYDPGFTCN  280 (487)
T ss_pred             -----------------cccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcCceeeeeeccCCchhhhhhcCCCcccc
Confidence                             467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhcC
Q 012140          423 TTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV  470 (470)
Q Consensus       423 ~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y~  470 (470)
                      |||++| ||||+|||.|++|||+|||+||+|  ||+.+.++++|++|+
T Consensus       281 ~~D~~G-RYaf~nQP~i~~WNL~rLa~aL~p--li~~~~~~~~L~~f~  325 (487)
T PRK00029        281 HSDHQG-RYAFGNQPAIALWNLARLAQALLP--LIAVEALQAALDRFG  325 (487)
T ss_pred             cCCCCc-cccccCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            999998 999999999999999999999997  998888999999884

>COG0397 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.4e-135  Score=1047.73  Aligned_cols=323  Identities=48%  Similarity=0.794  Sum_probs=310.6

Q ss_pred             ccccCcccccccccCCCCCCCCCCCccccCcceEecCCCCCCCCCeEEeecHHHHHHCCCCCCCCCCCChhhhccCCCCC
Q 012140          101 ALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL  180 (470)
Q Consensus       101 ~~~~l~~~n~~~~~lp~d~~~~~~~R~v~~~~ys~v~P~~~~~~P~lv~~n~~la~~LGLd~~~~~~~~~~~~fsGn~~~  180 (470)
                      ....++|+++|..++              +.||+.|.|+| +++|+|+++|+.+|..|||++++++++.|+++|+|++++
T Consensus         4 ~~~~~~~~~r~~~l~--------------~~~~t~v~p~p-~~~~~L~~~n~~la~~LgL~~~~~~~~~~~~~f~G~~v~   68 (488)
T COG0397           4 PQAALKFDPRFASLG--------------GEFYTPVTPAP-FPNPRLRWRNDRLAATLGLDPSLLDDEAFAEVFGGFQVL   68 (488)
T ss_pred             cccccCccHHHHhhc--------------hhhhcCcCCcc-CCCceeeeeCHhHHHhcCCChHhccChhHHHHhccCCCC
Confidence            345677888888755              49999999996 999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhccCCCCCCCCcCCCcceeeeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcC
Q 012140          181 AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLG  260 (470)
Q Consensus       181 ~g~~P~A~~YaGHQFG~fagqLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLG  260 (470)
                      +|+.|+||+|+|||||+|||||||||+|+|||+++++|+++||||||||+|||||+|||||||||+|||||||||||+||
T Consensus        69 ~~~~plA~~Y~GhQFG~~~~qLGDGR~ilLgE~~~~~G~~~diqlKGaG~TPySR~gDGRAvLrssiRE~l~SEAmh~LG  148 (488)
T COG0397          69 NGAPPLAMRYSGHQFGVYNPQLGDGRGFLLGELRGADGELFDIQLKGAGRTPYSRGGDGRAVLRSSIREYLASEALHALG  148 (488)
T ss_pred             CCCChhhhhhcccccccccCccCCceeeeeeeeecCCCcEEEEEeccCCCCCccccCCcchhhhhhHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCcccccc
Q 012140          261 IPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMN  340 (470)
Q Consensus       261 IPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~  340 (470)
                      ||||||||||.||++|+|+       ..||||||||||+|||||||||+|+++  ++.+.|++|+||||++|||++..  
T Consensus       149 IpTTRaL~lv~tg~~v~Re-------~~ep~Avl~R~A~ShIRfGtFe~f~~~--~~~e~l~~LaD~vI~~~~p~~~~--  217 (488)
T COG0397         149 IPTTRALSLVETGEPVQRE-------DEEPSAVLTRLAPSHIRFGTFERFAYR--DRRDLLRQLADHVIEHYFPDLAD--  217 (488)
T ss_pred             CCCcceeeeecCCCceecc-------ccccceEEEEecccceeeeccchhhhc--CChHHHHHHHHHHHHHhchhhhc--
Confidence            9999999999999999999       589999999999999999999999999  68999999999999999999984  


Q ss_pred             ccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCc
Q 012140          341 KSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFT  420 (470)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v  420 (470)
                                        ..+++|++||++||+|||+|||+||+|||||||||||||||+|||||||||||||.|||+||
T Consensus       218 ------------------~~e~~Y~~~fr~Vv~R~A~lvA~Wqa~GF~HGVmNTDNmSI~GeTiDYGP~aFld~ydp~f~  279 (488)
T COG0397         218 ------------------ESERPYAALFRAVVSRSARLVARWMAAGFVHGVLNTDNMSITGETFDYGPFAFLDRYDPNFV  279 (488)
T ss_pred             ------------------cCcchHHHHHHHHHHHHHHHHHHHHHhccccceeccCCceeecccccccceecccCCCCCcc
Confidence                              13678999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhcC
Q 012140          421 PNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV  470 (470)
Q Consensus       421 ~n~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y~  470 (470)
                      |||+|+.| ||+|+|||.|++|||+|||++|+|  ||+.+.++++|++|.
T Consensus       280 ~n~~D~~G-RY~f~nQP~I~~WNL~~LA~~L~p--li~~~~~~~aL~~y~  326 (488)
T COG0397         280 ANHFDHAG-RYSFGNQPEIAFWNLQRLAGALSP--LIDQAALEAALNSFS  326 (488)
T ss_pred             cccccccc-cccccCCchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHH
Confidence            99999998 999999999999999999999997  999999999999984

>PF02696 UPF0061: Uncharacterized ACR, YdiU/UPF0061 family; InterPro: IPR003846 The proteins in this entry are functionally uncharacterised

Probab=100.00  E-value=1.6e-134  Score=1057.17  Aligned_cols=315  Identities=57%  Similarity=0.938  Sum_probs=295.6

Q ss_pred             ccccCcceEecCCCCCCC---CCeEEeecHHHHHHCCCCCCCCCCCChhhh-ccCCCCCCC-CchhhhhhccCCCCCCCC
Q 012140          126 REVLHACYTKVSPSAEVE---NPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAG-AVPYAQCYGGHQFGMWAG  200 (470)
Q Consensus       126 R~v~~~~ys~v~P~~~~~---~P~lv~~n~~la~~LGLd~~~~~~~~~~~~-fsGn~~~~g-~~P~A~~YaGHQFG~fag  200 (470)
                      +.+...+|+.+.|+| ++   +|+||++|+++|++|||+++++++++++++ ++|+++++| +.|+||||+|||||+|+|
T Consensus        10 ~~~~~~~~~~~~p~~-~~~~~~p~lv~~n~~la~~Lgl~~~~~~~~~~~~~~~~g~~~~~g~~~p~A~~YaGHQFG~~~~   88 (487)
T PF02696_consen   10 SALLSLFYSFVSPVP-PAPFPNPRLVAFNDDLAEELGLDPSELESPEFAEFVFSGNKLLPGSAEPLAQAYAGHQFGQFAP   88 (487)
T ss_pred             HhhhccCCceecccc-CCCCCCCEEEEECHHHHHHcCCChhHcCChhHHHHhhhhhccCCCCcchHHHHHcCCCCCCCCC
Confidence            345567788877775 55   999999999999999999999999999987 899999999 999999999999999999


Q ss_pred             cCCCcceeeeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecC-Ceeeec
Q 012140          201 QLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG-KFVTRD  279 (470)
Q Consensus       201 qLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tg-e~V~R~  279 (470)
                      ||||||||+|||+++.+|++|||||||||+|||||+|||||||||||||||||||||+||||||||||||+|+ +.|+|+
T Consensus        89 qLGDGRailLgE~~~~~g~~~dlqLKGaG~TPySR~gDGrAvLrssIREyL~SEAm~aLGIPTTRaLalv~t~~~~v~r~  168 (487)
T PF02696_consen   89 QLGDGRAILLGEVRDPDGQRWDLQLKGAGRTPYSRGGDGRAVLRSSIREYLCSEAMHALGIPTTRALALVTTGEEPVRRE  168 (487)
T ss_pred             ccCCcceEEeeeeecCCCcEEEEeccCCCCCCCccCCCCcchHHHHHHHHHHHHHHHhCCCCccceeEEEEcCCeeEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 677787


Q ss_pred             cccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCccccc
Q 012140          280 MFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDL  359 (470)
Q Consensus       280 ~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~  359 (470)
                             +.||||||||||||||||||||+|+++  ++.+.|++|+||||++||||+...                 ...
T Consensus       169 -------~~ep~Avv~RvA~S~iR~GsFe~~~~~--~~~~~l~~L~dy~i~~~~pe~~~~-----------------~~~  222 (487)
T PF02696_consen  169 -------TPEPGAVVTRVAPSHIRFGSFEYFAYR--GDPEGLRQLADYVIKRHYPEIQGH-----------------LAD  222 (487)
T ss_pred             -------CCCCceEEEeccccceeeeeeehhhhc--CCHHHHHHHHHHHHHHhCCccccc-----------------ccc
Confidence                   689999999999999999999999999  689999999999999999986530                 011


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccCCCCCCCCccccCCchHH
Q 012140          360 TSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDI  439 (470)
Q Consensus       360 ~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i  439 (470)
                      .+++|.+||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+|||||+|++| ||||+|||+|
T Consensus       223 ~~~~y~~~~~~v~~rtA~lvA~Wq~vGF~HGVmNTDNmsi~G~TiDYGP~aFmd~ydp~~v~n~~D~~g-RYaf~nQP~i  301 (487)
T PF02696_consen  223 DEDPYLALLREVVERTAELVAQWQAVGFCHGVMNTDNMSILGETIDYGPFAFMDDYDPNFVCNHSDHQG-RYAFGNQPSI  301 (487)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCeeeeeeEeccCccccccCCCCCceecccCCCC-cccccCcHHH
Confidence            456999999999999999999999999999999999999999999999999999999999999999988 9999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCHHHHHHHhhhcC
Q 012140          440 GLWNIAQFSTTLAAAKLIDDKEANYVMERFV  470 (470)
Q Consensus       440 ~~WNL~rLaeaL~p~pli~~~~~~~~L~~y~  470 (470)
                      ++|||.|||+||.|  ||+.++++++|++|+
T Consensus       302 ~~WNL~~La~aL~p--li~~~~l~~~L~~f~  330 (487)
T PF02696_consen  302 ALWNLARLAEALLP--LIGEDQLEEALDEFE  330 (487)
T ss_pred             HHHHHHHHHHHHHH--hcChHHHHHHHHHHH
Confidence            99999999999997  999999999999884

>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]

Probab=100.00  E-value=4.6e-87  Score=676.51  Aligned_cols=236  Identities=56%  Similarity=0.871  Sum_probs=207.9

Q ss_pred             eeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecC-CeeeeccccCCCCC
Q 012140          209 TLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG-KFVTRDMFYDGNPK  287 (470)
Q Consensus       209 lLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tg-e~V~R~~~y~g~~~  287 (470)
                      ++|++....|++||+||||+|+|||||++||||||||||||||||||||+||||||||++++... ..+.|.       +
T Consensus         2 l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtvaqr~-------~   74 (500)
T KOG2542|consen    2 LLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVAQRP-------K   74 (500)
T ss_pred             ccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCccccccc-------c
Confidence            67888899999999999999999999999999999999999999999999999999999999874 555555       7


Q ss_pred             CCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHH
Q 012140          288 EEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAW  367 (470)
Q Consensus       288 ~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~  367 (470)
                      .||||||||+||||||||+|++|.++  .++..+.+|.||+++-.|........+  +-.++...|.   .++.++|.+|
T Consensus        75 ~epcaVvcr~apswIr~g~f~lf~~~--~~h~gl~~lsdyc~~~~fk~gd~f~s~--~~~~~~~gd~---~~T~nryaaf  147 (500)
T KOG2542|consen   75 YEPCAVVCRVAPSWIRFGSFELFKSA--DEHTGLAGLSDYCNDIRFKLGDYFISS--FYPEIQAGDA---SDTVNRYAAF  147 (500)
T ss_pred             ccceeEEEeecchhhhhhhhHHHhhH--hhhcccccccccchhhhcccCcccccc--cccccccccc---hhhhhHHHHH
Confidence            99999999999999999999999999  689999999999999877544321100  0001111111   1377999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHHHHH
Q 012140          368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQF  447 (470)
Q Consensus       368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL~rL  447 (470)
                      |++|++|||++||+||+|||||||||||||||+|+|||||||||+|.|||+|||||+|..| ||+|.|||+|++|||.+|
T Consensus       148 freVa~rtA~tVA~WQavGF~hGVLNTDNmSIlGlTIDYGPFgFLD~ydPsftpNhdD~~g-RYsyanQPdIi~WNL~kl  226 (500)
T KOG2542|consen  148 FREVARRTARTVAEWQAVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPSFTPNHDDNTG-RYSYANQPDIIRWNLRKL  226 (500)
T ss_pred             HHHHHHHhhHHHHHHhhhcccccccccCCceeeeeeeccCCcccccccCCCCCCCCCCccc-ceeecCCCceeeehHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998 899999999999999999


Q ss_pred             HHhhccCCCCCHHH
Q 012140          448 STTLAAAKLIDDKE  461 (470)
Q Consensus       448 aeaL~p~pli~~~~  461 (470)
                      |++|.|  ||..+.
T Consensus       227 AkaLa~--llg~e~  238 (500)
T KOG2542|consen  227 AKALAP--LLGLEL  238 (500)
T ss_pred             HHHHHH--hcccch
Confidence            999996  776443

>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]

Probab=97.79  E-value=4.4e-06  Score=87.47  Aligned_cols=155  Identities=9%  Similarity=-0.107  Sum_probs=120.7

Q ss_pred             eeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeee
Q 012140          224 QLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR  303 (470)
Q Consensus       224 QLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIR  303 (470)
                      +|+|.+.|++++..++.++.+++++++.+++-||-|++++++.||.-....-+.+++++.+.+..|++.+      +..+
T Consensus         1 ~l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtva------qr~~   74 (500)
T KOG2542|consen    1 MLLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVA------QRPK   74 (500)
T ss_pred             CccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCcccc------cccc
Confidence            5899999999999999999999999999999999999999999999999999999999999988888776      7889


Q ss_pred             eccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCccccc---chh--HHHHHHHHHHHHHHHH
Q 012140          304 FGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDL---TSN--KYAAWAVEVAERTASL  378 (470)
Q Consensus       304 fGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~y~a~~~eVv~RtA~L  378 (470)
                      ++...+..++++.......-.+++.+++|++.+..+....++.|..+.+..+-...   +.+  .-..=+.+..+..|+.
T Consensus        75 ~epcaVvcr~apswIr~g~f~lf~~~~~h~gl~~lsdyc~~~~fk~gd~f~s~~~~~~~~gd~~~T~nryaaffreVa~r  154 (500)
T KOG2542|consen   75 YEPCAVVCRVAPSWIRFGSFELFKSADEHTGLAGLSDYCNDIRFKLGDYFISSFYPEIQAGDASDTVNRYAAFFREVARR  154 (500)
T ss_pred             ccceeEEEeecchhhhhhhhHHHhhHhhhcccccccccchhhhcccCcccccccccccccccchhhhhHHHHHHHHHHHH
Confidence            99999988887667777888999999999998875444455667766555431000   011  1233345555555555


Q ss_pred             HHHHHH
Q 012140          379 VAQWQG  384 (470)
Q Consensus       379 VA~Wq~  384 (470)
                      -|.=.+
T Consensus       155 tA~tVA  160 (500)
T KOG2542|consen  155 TARTVA  160 (500)
T ss_pred             hhHHHH
Confidence            555433

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.79  E-value=0.027  Score=53.02  Aligned_cols=150  Identities=17%  Similarity=0.197  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHH
Q 012140          245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTL  324 (470)
Q Consensus       245 SsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~L  324 (470)
                      .+.|||-..+.|+.+||||.+.++........           ...+.++|+--+.                    ...|
T Consensus        57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~-----------~~~s~lite~l~~--------------------~~~L  105 (206)
T PF06293_consen   57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGG-----------GYRSYLITEALPG--------------------AQDL  105 (206)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCC-----------ceeEEEEEEeCCC--------------------cccH
Confidence            48999999999999999999999996543111           1233445543321                    1123


Q ss_pred             HHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeee
Q 012140          325 ADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI  404 (470)
Q Consensus       325 aDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TI  404 (470)
                      .++..+..-  ..                           .+.-++++++.|++||+=-..|++||=||+-|+-|.... 
T Consensus       106 ~~~~~~~~~--~~---------------------------~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~-  155 (206)
T PF06293_consen  106 RDLLQQWEQ--LD---------------------------PSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDD-  155 (206)
T ss_pred             HHHHHhhcc--cc---------------------------hhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCC-
Confidence            333332111  00                           123477888899999999999999999999999998876 


Q ss_pred             cccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhc
Q 012140          405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF  469 (470)
Q Consensus       405 DYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y  469 (470)
                        |++          -+.-||-+.-+..-. -+.-..=||++|-.++.. .-+++++....|..|
T Consensus       156 --~~~----------~~~lIDld~~~~~~~-~~~~~~~dL~~L~rs~~~-~~~~~~d~~~fl~~Y  206 (206)
T PF06293_consen  156 --GQY----------RFYLIDLDRMRFRPS-SRRWRAKDLARLLRSLLR-SGWSERDRQRFLRGY  206 (206)
T ss_pred             --Cce----------eEEEEcchhceeCCC-ChHHHHHhHHHHHHhccc-cCCCHHHHHHHHhhC
Confidence              221          122234321122111 333444699999999763 356788888888776

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=95.71  E-value=0.31  Score=48.70  Aligned_cols=158  Identities=12%  Similarity=0.095  Sum_probs=91.3

Q ss_pred             hhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHH
Q 012140          245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTL  324 (470)
Q Consensus       245 SsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~L  324 (470)
                      ...|||-+-+.|+.+||||...++.......          +....+-++|+-.+.                 ...++  
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~----------~~~~~s~LVte~l~~-----------------~~sL~--  124 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSN----------PATRTSFIITEDLAP-----------------TISLE--  124 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCC----------CccceeEEEEeeCCC-----------------CccHH--
Confidence            4789999999999999999999887432210          012345566654321                 11122  


Q ss_pred             HHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeee
Q 012140          325 ADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI  404 (470)
Q Consensus       325 aDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TI  404 (470)
                       |++-+..  .  .                       ....+.-+++++..|++|++--..|++||=||+-|+-|-..+.
T Consensus       125 -~~~~~~~--~--~-----------------------~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~  176 (268)
T PRK15123        125 -DYCADWA--T--N-----------------------PPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFP  176 (268)
T ss_pred             -HHHHhhc--c--c-----------------------CCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEecccc
Confidence             2221110  0  0                       0112345678888999999999999999999999999974210


Q ss_pred             cccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhc
Q 012140          405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF  469 (470)
Q Consensus       405 DYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y  469 (470)
                      +=         +.+..+.-||-+.-+-.-.--+.-...||.+|--+..+ ..++..+....|..|
T Consensus       177 ~~---------~~~~~~~LIDl~r~~~~~~~~~~~r~~dL~~L~~s~~~-~~ls~~d~~~fl~~Y  231 (268)
T PRK15123        177 GR---------EEDLKLSVIDLHRAQIRARVPRRWRDKDLAGLYFSAMD-IGLTQRDILRFLRVY  231 (268)
T ss_pred             CC---------CCCceEEEEECCcccccCCCChHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHH
Confidence            00         00122333443221111111234567899999877543 236666655555555

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=90.26  E-value=1.6  Score=43.35  Aligned_cols=125  Identities=22%  Similarity=0.251  Sum_probs=84.8

Q ss_pred             CCccchhhhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCC
Q 012140          238 DGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQED  317 (470)
Q Consensus       238 DGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d  317 (470)
                      |=+...+-+.+|-=..--++++|||..+-..+=.-+.+++=|                     ||          .    
T Consensus        49 D~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME---------------------~~----------~----   93 (229)
T KOG3087|consen   49 DQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME---------------------FI----------D----   93 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE---------------------ec----------c----
Confidence            555667788889888889999999999988876555555554                     22          1    


Q ss_pred             HHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCc
Q 012140          318 LDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNM  397 (470)
Q Consensus       318 ~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNm  397 (470)
                        .-..+.+|++.+.-++..+                           +.+.+++++..+.|++--.-+.|||=|.|.||
T Consensus        94 --g~~~vk~~i~~~~~~~~~d---------------------------~~~~~~~~~iG~~igklH~ndiiHGDLTTSNi  144 (229)
T KOG3087|consen   94 --GASTVKDFILSTMEDESED---------------------------EGLAELARRIGELIGKLHDNDIIHGDLTTSNI  144 (229)
T ss_pred             --chhHHHHHHHHHccCcccc---------------------------hhHHHHHHHHHHHHHHhhhCCeecccccccce
Confidence              1234668877765333221                           23477888889999999999999999999999


Q ss_pred             eeEeeeecccccccccCCCCCCccCCCCCCC
Q 012140          398 SILGLTIDYGPFGFLDAFDPSFTPNTTDLPG  428 (470)
Q Consensus       398 SI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G  428 (470)
                      -+---.-++=|  ++..|--.++.+...+.|
T Consensus       145 ll~~~~~~~~~--~lIdfgls~~s~~~EDKg  173 (229)
T KOG3087|consen  145 LLRSDGNQITP--ILIDFGLSSVSRLPEDKG  173 (229)
T ss_pred             EEecCCCcCce--EEEeecchhcccCccccc
Confidence            87543333222  344555556655544444

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=85.03  E-value=0.93  Score=44.59  Aligned_cols=39  Identities=31%  Similarity=0.526  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHhhcccccccCCCceeEee---eecccc
Q 012140          370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL---TIDYGP  408 (470)
Q Consensus       370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~---TIDYGP  408 (470)
                      .++++.-++|++--..|+|||=+.|.||-+.|.   -||||=
T Consensus        96 ~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~i~~IDfGL  137 (204)
T COG3642          96 DLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGRIYFIDFGL  137 (204)
T ss_pred             HHHHHHHHHHHHHHhcCeecCCCccceEEEeCCcEEEEECCc
Confidence            466778889999999999999999999999998   788884

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=81.03  E-value=8  Score=37.38  Aligned_cols=30  Identities=40%  Similarity=0.530  Sum_probs=26.0

Q ss_pred             hhHHHHHHHHHhhhcCCCccceeEEEecCC
Q 012140          245 SSIREFLCSEAMHFLGIPTTRALCLVTTGK  274 (470)
Q Consensus       245 SsIREyL~SEAMhaLGIPTTRALalv~tge  274 (470)
                      +.-|||-+...++.+|+|+.+.+.+...++
T Consensus        38 ~i~~E~~~l~~l~~~glpvP~~~~~~~~~~   67 (226)
T TIGR02172        38 TIKREFDASRKVFSLGIPTPHPFDLVEDGG   67 (226)
T ss_pred             HHHHHHHHHHHHHHcCCCCCceEEEEecCC
Confidence            468999999999999999999999986553

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PRK09902 hypothetical protein; Provisional

Probab=80.06  E-value=4  Score=40.39  Aligned_cols=165  Identities=16%  Similarity=0.144  Sum_probs=96.3

Q ss_pred             eEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccC
Q 012140          220 RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQ  299 (470)
Q Consensus       220 r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~  299 (470)
                      +.+=||+|+=+=|+     |++   +-.|||..-+.|+.+|||+.+..+--     +.|..      ..-.+-+||+-- 
T Consensus        48 rq~nhl~~s~r~P~-----g~p---tf~rE~~~L~~L~~~GvPVP~pvf~~-----~~k~~------~~~rA~LVTe~L-  107 (216)
T PRK09902         48 RMTHHLFHSVRYPF-----GRP---TIVREVAVIKELERAGVIVPKIVFGE-----AVKIE------GEWRALLVTEDM-  107 (216)
T ss_pred             eccCcccccccCCC-----Cch---HHHHHHHHHHHHHHcCCCCCccceee-----eeccC------CceEEEEEEEeC-
Confidence            34556777766676     344   35799999999999999998876431     11110      122334455411 


Q ss_pred             CeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 012140          300 SFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLV  379 (470)
Q Consensus       300 ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LV  379 (470)
                                         +.-+.|.+++.+.--..                           +-.++-+.+..+.|++|
T Consensus       108 -------------------~g~~~L~~~l~~~~~~~---------------------------~~~~~k~~il~~va~~i  141 (216)
T PRK09902        108 -------------------AGFISIADWYAQHAVSP---------------------------YSDEVRQAMLKAVALAF  141 (216)
T ss_pred             -------------------CCCccHHHHHhcCCcCC---------------------------cchHHHHHHHHHHHHHH
Confidence                               11233666644421110                           11234467788899999


Q ss_pred             HHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccCCCCCCCCcccc-CCchHHHHHHHHHHHHhhccCCCCC
Q 012140          380 AQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCF-ANQPDIGLWNIAQFSTTLAAAKLID  458 (470)
Q Consensus       380 A~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf-~nQP~i~~WNL~rLaeaL~p~pli~  458 (470)
                      ++=-..|.+||=+|--|+.+-..- +| ..+|+|            -+-.|..+ ..+.  ..=.|.+|..-+.   -++
T Consensus       142 a~LH~~Gv~Hgdly~khIll~~~g-~~-~v~lID------------lEk~r~~l~~~~~--~~~Dl~~l~r~~~---~~s  202 (216)
T PRK09902        142 KKMHSVNRQHGCCYVRHIYVKTEG-KA-EAGFLD------------LEKSRRRLRRDKA--INHDFRQLEKYLE---PIP  202 (216)
T ss_pred             HHHHHCCCcCCCCCHhheeecCCC-Ce-eEEEEE------------hhccchhhhhhhh--hHhHHHHHHHhcc---CCC
Confidence            999999999999999999885211 11 345544            12113333 2222  3346777774443   366


Q ss_pred             HHHHHHHhhhc
Q 012140          459 DKEANYVMERF  469 (470)
Q Consensus       459 ~~~~~~~L~~y  469 (470)
                      +.+....|..|
T Consensus       203 ~~~~~~~~~~y  213 (216)
T PRK09902        203 KADWEQVKAYY  213 (216)
T ss_pred             HHHHHHHHHHH
Confidence            77777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	470
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 66/483 (13%), Positives = 134/483 (27%), Gaps = 156/483 (32%)

Query: 78  NQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPR-TDSIPREVLHACYTKV 136
           +  +D ET      E +   K   L     + +FV     D +    +P+ +L       
Sbjct: 4   HHHMDFET-----GEHQYQYK-DILSVF--EDAFVDNF--DCKDVQDMPKSIL------- 46

Query: 137 SPSAEVEN----PQLVAWSESVADSLELDPKE----F----ERPDFPLFFSG--ATPLAG 182
               E+++       V+ +  +  +L    +E    F     R ++    S         
Sbjct: 47  -SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 183 AVPYAQCYGGHQFGMW-AGQLGDGRAITLGE-ILNLKSERWELQ---------LKGAGKT 231
           ++     Y   +  ++   Q+     ++  +  L L+    EL+         + G+GKT
Sbjct: 106 SMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 232 PYSRFADGLA--VLRSSIREFLCSEAMHFLGIPTTR----------ALCLVTTGKFVTRD 279
                   +A  V  S   +      + +L +               L       + +R 
Sbjct: 165 W-------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 280 MFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIV----------------RT 323
             +  N K    +I     Q+ LR     + +   +  L ++                + 
Sbjct: 218 -DHSSNIKLRIHSI-----QAELR---RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 324 L--------ADYAIRHHFRHI------ENMNKSESLS-FSTGDEDHSVVDLTSNKYAAWA 368
           L         D+       HI        +   E  S           +D          
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCRPQDLPREV 322

Query: 369 VEVAERTASLVA--------QWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPS-- 418
           +    R  S++A         W    + H  +N D ++     I+      L+  +P+  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWD--NWKH--VNCDKLTT---IIE----SSLNVLEPAEY 371

Query: 419 ---------FTPNTTDLPGRRYCFANQPDIGLWN------IAQFSTTLAAAKLI--DDKE 461
                    F P +  +P             +W       +      L    L+    KE
Sbjct: 372 RKMFDRLSVF-PPSAHIPTILLSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 462 ANY 464
           +  
Sbjct: 424 STI 426

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	82.63

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=82.63  E-value=0.85  Score=41.57  Aligned_cols=18  Identities=22%  Similarity=0.073  Sum_probs=15.4

Q ss_pred             HhhcccccccCCCceeEe
Q 012140          384 GVGFTHGVLNTDNMSILG  401 (470)
Q Consensus       384 ~vGF~HGVmNTDNmSI~G  401 (470)
                      ..|.|||=++.+|+-+.+
T Consensus       191 p~~liHgDlh~~NvL~~~  208 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRD  208 (325)
T ss_dssp             CCEECCSSCSGGGEEESS
T ss_pred             CceeecCCCCcccEEEeC
Confidence            579999999999987754