Citrus Sinensis ID: 012152


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MDCFQTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGPSHVSSTSELANPPTTGLFEPIEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPWPASSSASSLSLCAPEMSLPALPTSETLKNPGCRGCVLEVLVPIFSIFAVSALLY
ccccccccccccHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcc
ccccccccccccHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccEEEEEccccccccccccccEEEcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHc
mdcfqtvsqlkgSMCHAFLLFIAWLFSFQDVVALHNvlgpshvsstselanppttglfepieispavippypyageplppmyptfpttyepnltgrcpvnfsAMSSIMQKtasdcsqplaplvgnviccpqlgsLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILAsrganhtiptlcsvtslnltggscpvkdvVSFEKIVNTSKLldacstvdplkeccrpicqPAIMEAALQISgtqmtftenknfvggsdqvdALNDCKGVAYSYLSSKLSAEAANSAFRILSAckvnkvcpldfkqpsEVIEACrnvaapspsccssLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYElcdvdlkdfsiqaygqqgcllrslpadvvldnitgysftcdltdniaapwpasssasslslcapemslpalptsetlknpgcrgcvlEVLVPIFSIFAVSALLY
MDCFQTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGPSHVSSTSELANPPTTGLFEPIEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPWPASSSASSLSLCAPEMSLPALPTSETLKNPGCRGCVLEVLVPIFSIFAVSALLY
MDCFQTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGPSHVSSTSELANPPTTGLFEPIEISPAVIppypyageplppMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIaapwpasssasslslcapEMSLPALPTSETLKNPGCRGCVLEVLVPIFSIFAVSALLY
****QTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGP**************TGLFEPIEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPW**************************LKNPGCRGCVLEVLVPIFSIFAVSALL*
********QLKGSMCHAFLLFIAWLFSFQDVVALHNVLG*********************IEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQ***************VDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPW**********************************CVLEVLVPIFSIFAVSALLY
*********LKGSMCHAFLLFIAWLFSFQDVVALHNVLGPS**********PPTTGLFEPIEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPW*********SLCAPEMSLPALPTSETLKNPGCRGCVLEVLVPIFSIFAVSALLY
*****TVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGPSHVSSTSELANPPTTGLFEPIEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQM*F*E*********QVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPWP****************LPALPTS****NPGCRGCVLEVLVPIFSIFAVSALLY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDCFQTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGPSHVSSTSELANPPTTGLFEPIEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPWPASSSASSLSLCAPEMSLPALPTSETLKNPGCRGCVLEVLVPIFSIFAVSALLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
Q8GUI4433 Uncharacterized GPI-ancho no no 0.789 0.856 0.422 3e-77
>sp|Q8GUI4|UGPI6_ARATH Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1 Back     alignment and function desciption
 Score =  289 bits (740), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/388 (42%), Positives = 227/388 (58%), Gaps = 17/388 (4%)

Query: 59  EPIEISPAVIP---PYPYAGEPLP-PMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASD 114
           +P E  P + P   P P+     P PM P   +T  P L+G C +NFSA  S++Q T+ +
Sbjct: 28  KPEEFLPEISPDTSPQPFLPFIAPSPMVPYINSTM-PKLSGLCSLNFSASESLIQTTSHN 86

Query: 115 CSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGAN 174
           C    APL+ NV+CCPQL + L I  G  S ++  L L  T +  C SD+  IL  +GA+
Sbjct: 87  CWTVFAPLLANVMCCPQLDATLTIILGKASKETGLLALNRTQSKHCLSDLEQILVGKGAS 146

Query: 175 HTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIME 234
             +  +CS+ S NLT  SCPV +V  FE  V+T+KLL AC  +DP+KECC   CQ AI++
Sbjct: 147 GQLNKICSIHSSNLTSSSCPVINVDEFESTVDTAKLLLACEKIDPVKECCEEACQNAILD 206

Query: 235 AALQIS-GTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACK 293
           AA  IS     T T+N          D +NDCK V   +L++KL         R L+ CK
Sbjct: 207 AATNISLKASETLTDNS---------DRINDCKNVVNRWLATKLDPSRVKETLRGLANCK 257

Query: 294 VNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGS 353
           +N+VCPL F     +   C N  +    CC ++ +Y++ +QKQ LITN QA+ CA   G+
Sbjct: 258 INRVCPLVFPHMKHIGGNCSNELSNQTGCCRAMESYVSHLQKQTLITNLQALDCATSLGT 317

Query: 354 MLRKEGVMTNIYELCDVDLKDFSIQAYGQQ-GCLLRSLPADVVLDNITGYSFTCDLTDNI 412
            L+K  +  NI+ +C + LKDFS+Q   Q+ GCLL SLP+D + D  TG SFTCDL DNI
Sbjct: 318 KLQKLNITKNIFSVCHISLKDFSLQVGNQESGCLLPSLPSDAIFDKDTGISFTCDLNDNI 377

Query: 413 AAPWPASSSASSLSLCAPEMSLPALPTS 440
            APWP+SS +S+ + C   + +PALP +
Sbjct: 378 PAPWPSSSLSSAST-CKKPVRIPALPAA 404





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
449468864474 PREDICTED: uncharacterized GPI-anchored 1.0 0.991 0.744 0.0
225434028470 PREDICTED: uncharacterized GPI-anchored 0.997 0.997 0.735 0.0
449484768475 PREDICTED: uncharacterized GPI-anchored 0.985 0.974 0.744 0.0
255578894448 conserved hypothetical protein [Ricinus 0.934 0.979 0.779 0.0
224133364438 predicted protein [Populus trichocarpa] 0.925 0.993 0.767 0.0
356542790477 PREDICTED: uncharacterized GPI-anchored 1.0 0.985 0.716 0.0
255636527451 unknown [Glycine max] 0.936 0.975 0.728 0.0
147855996467 hypothetical protein VITISV_030074 [Viti 0.904 0.910 0.734 0.0
356531653478 PREDICTED: uncharacterized GPI-anchored 0.942 0.926 0.722 1e-180
297826487479 hypothetical protein ARALYDRAFT_481988 [ 0.987 0.968 0.691 1e-180
>gi|449468864|ref|XP_004152141.1| PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/473 (74%), Positives = 395/473 (83%), Gaps = 3/473 (0%)

Query: 1   MDCFQTVSQL--KGSMCHAFLLFIAWLFSFQDVVALHNVLGPSHVSSTSELANPPTTGLF 58
           MDCF TVS     G+MCH  LLF+ W+ SF D VAL  V+    V S  E A  P++ +F
Sbjct: 2   MDCFHTVSYSYPNGNMCHRLLLFVIWISSFHDGVALPTVVNRHLVPSMREQAQSPSSVVF 61

Query: 59  EPIEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQP 118
           +PIEISPAVIP YPY  E LPPMYPTFPT Y+P LTGRCPVNFS +S++M KTASDCSQP
Sbjct: 62  DPIEISPAVIPQYPYPNESLPPMYPTFPTRYDPVLTGRCPVNFSVISNVMDKTASDCSQP 121

Query: 119 LAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIP 178
           +A LVGNVICCPQL SLLHIFQGFY + SD+LVLQ  VANDCFSDI+SILASRGAN TIP
Sbjct: 122 MAALVGNVICCPQLSSLLHIFQGFYGLSSDQLVLQEAVANDCFSDIISILASRGANQTIP 181

Query: 179 TLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQ 238
           +LCSV S NLTGGSCPV DVV+FEK+VN SKLLDAC TVDPLKECCRPICQPAIMEAALQ
Sbjct: 182 SLCSVKSSNLTGGSCPVTDVVTFEKLVNVSKLLDACDTVDPLKECCRPICQPAIMEAALQ 241

Query: 239 ISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVC 298
           ISG Q T   + N  G +  +D++NDCK V YSY+S KLS++AAN+AFRILS+CKVNKVC
Sbjct: 242 ISGRQFTTDTSSNVAGQATHIDSINDCKRVVYSYISRKLSSDAANTAFRILSSCKVNKVC 301

Query: 299 PLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKE 358
           PLDF+QPSE+I+ CRNVAAPSPSCCSSLN+YIAG+QKQMLITNKQAIICA +FGSMLRK 
Sbjct: 302 PLDFEQPSELIKDCRNVAAPSPSCCSSLNSYIAGIQKQMLITNKQAIICATMFGSMLRKG 361

Query: 359 GVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPWPA 418
           GVMTN+YELCDVDLKDFSIQAYGQQGCLLRSLP+DVV DN TG+SFTCDLTDNIAAPWP+
Sbjct: 362 GVMTNVYELCDVDLKDFSIQAYGQQGCLLRSLPSDVVFDNSTGFSFTCDLTDNIAAPWPS 421

Query: 419 SSSASSLSLCAPEMSLPALPTSETLKNPGCRGCVLEVLVPIFSIF-AVSALLY 470
           SSS S+LSLCAPEMSLPALPTSET +N G R   L+  +PIF  F  VSA LY
Sbjct: 422 SSSISTLSLCAPEMSLPALPTSETRRNSGQREEGLDFPMPIFLFFIMVSAFLY 474




Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434028|ref|XP_002273850.1| PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449484768|ref|XP_004156974.1| PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255578894|ref|XP_002530300.1| conserved hypothetical protein [Ricinus communis] gi|223530156|gb|EEF32067.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224133364|ref|XP_002328024.1| predicted protein [Populus trichocarpa] gi|222837433|gb|EEE75812.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356542790|ref|XP_003539848.1| PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Glycine max] Back     alignment and taxonomy information
>gi|255636527|gb|ACU18602.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147855996|emb|CAN82818.1| hypothetical protein VITISV_030074 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531653|ref|XP_003534391.1| PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Glycine max] Back     alignment and taxonomy information
>gi|297826487|ref|XP_002881126.1| hypothetical protein ARALYDRAFT_481988 [Arabidopsis lyrata subsp. lyrata] gi|297326965|gb|EFH57385.1| hypothetical protein ARALYDRAFT_481988 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2054472480 AT2G30700 "AT2G30700" [Arabido 0.985 0.964 0.662 1.1e-160
TAIR|locus:2036788433 AT1G61900 "AT1G61900" [Arabido 0.789 0.856 0.4 1.1e-69
TAIR|locus:2054472 AT2G30700 "AT2G30700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
 Identities = 312/471 (66%), Positives = 362/471 (76%)

Query:     1 MDCFQTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGP-SHVSSTSELANPPTTGLFE 59
             M   +TV  LKG + + FLLFI WL SFQDV A H+ L   S  S+TSELANPP  G+  
Sbjct:     8 MGSLETVCWLKGCLVYRFLLFIIWLSSFQDVAA-HDKLNEHSSRSTTSELANPPGIGVSG 66

Query:    60 PIEISPAVIXXXXXXXXXXXX-MYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQP 118
             PI++SP+VI             MYPTFP TYEP LTG+CP +F A+SS++   ASDCSQP
Sbjct:    67 PIQVSPSVIPKYASPALPWTPPMYPTFPDTYEPKLTGKCPTDFQAISSVIDTAASDCSQP 126

Query:   119 LAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIP 178
              A LVGNVICCPQ  SLLHIFQG +++KS+KLVL + VA DCFSDI+SIL SR AN TIP
Sbjct:   127 FAALVGNVICCPQFVSLLHIFQGQHNVKSNKLVLPDAVATDCFSDIVSILVSRRANMTIP 186

Query:   179 TLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQ 238
              LCSVTS NLTGGSCPV DV +FEK+VN+SKLLDAC TVDPLKECCRPICQPAIMEAAL 
Sbjct:   187 ALCSVTSSNLTGGSCPVTDVTTFEKVVNSSKLLDACRTVDPLKECCRPICQPAIMEAALI 246

Query:   239 ISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVC 298
             ISG QMT  + K  + GS+ V+A+NDCK V +SYLS KL A+ AN+AFRILS+CKVNK C
Sbjct:   247 ISGHQMTVGD-KIPLAGSNNVNAINDCKNVVFSYLSRKLPADKANAAFRILSSCKVNKAC 305

Query:   299 PLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKE 358
             PL+FK+P+EVI+ACRNVAAPSPSCCSSLNAYI+G+Q QMLITNKQAI+CA V GSMLRK 
Sbjct:   306 PLEFKEPTEVIKACRNVAAPSPSCCSSLNAYISGIQNQMLITNKQAIVCATVIGSMLRKG 365

Query:   359 GVMTNIYELCDVDLKDFSIQAYG-QQGCLLRSLPADVVLDNITGYSFTCDLTDNIXXXXX 417
             GVMTNIYELCDVDLKDFS+QAYG QQGCLLRS PAD++ DN +GYSFTCDLTDNI     
Sbjct:   366 GVMTNIYELCDVDLKDFSVQAYGMQQGCLLRSYPADLIFDNTSGYSFTCDLTDNIAAPWP 425

Query:   418 XXXXXXXXXXXXXEMSLPALPTSETLKNPG-CRGCV--LEVLVPIFSIFAV 465
                          EMSLPALPTS+T+KN G C G V  L ++V +F ++ V
Sbjct:   426 SSSSMSSLSLCAPEMSLPALPTSQTIKNHGFCNGGVGALRLIVLVFLLYVV 476




GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2036788 AT1G61900 "AT1G61900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.64.483.1
hypothetical protein (438 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 46/332 (13%), Positives = 89/332 (26%), Gaps = 119/332 (35%)

Query: 195 VKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQISGTQMTFTEN--KNF 252
            KDV    K + + + +D       +            +   L++  T ++  E   + F
Sbjct: 35  CKDVQDMPKSILSKEEID-----HIIMS-------KDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 253 VGGSDQVDALNDCKGVAYSYLSSKLSAEA-ANSAFRILSACKVNKVC--PLDFKQPSEVI 309
           V    +++         Y +L S +  E    S    +   + +++      F +     
Sbjct: 83  VEEVLRIN---------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK----- 128

Query: 310 EACRNVAAPSP-----SCCSSL--NAYI-----AGVQKQMLIT---NKQAIICA---AVF 351
               NV+   P          L     +      G  K  +         + C     +F
Sbjct: 129 ---YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 352 ----GSMLRKEGVMTNIYELCDV--------------------DLKD-----FSIQAYGQ 382
                +    E V+  + +L                        ++         + Y  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-- 243

Query: 383 QGCLLRSLPADVVLDN------ITGYSFTC---------DLTDNIAA----------PWP 417
           + CLL       VL N         ++ +C          +TD ++A             
Sbjct: 244 ENCLL-------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 418 ASSSASSLSLCAP--EMSLPALPTSETLK-NP 446
             +     SL     +     LP  E L  NP
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP 327


>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00