Citrus Sinensis ID: 012157

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKV
ccccEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccEEEcEEEEccccccccccccccccccEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEcccHHHHHHHHHHHccEEcccccccccccccccccEEEEEEEccEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccc
ccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHEcccccEEEEccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHEEEEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcHcEEEEEEcccccEcccEEEEEEEEEcccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEEcccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcc
mhspvlvlkdslkresgtkvhhaNIQASKAVADIIRTTLGPRSMLKMLLDasggivvtndGNAILRELDVAHPAAKSMIELSrtqdeevgdgTTSVIVLAGEMLHVAEefidknyhptvICRAYNKALEDAVAVLDKiampidtnDRATMLGLVKScigtkftsQFGDLIADLAIDATTTVgvdlgqglrevDIKKYIKvekvpggqledsrvLKGVmfnkdvvapgkmrrkivnpriilldspleykkgenqtnaelvkeEDWEVLLKMEEEYIENLCMQILKfkpdlviteKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGavivnrpdelqesdvgtgaGLFEVKKIGDEFFAFIvdckdpkaCTVLLRGASKDLLNEVERNLQDAMSVARNiiknpklvpgggateLTVSATLkqksssiegiekwpYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKV
mhspvlvlkdslkresgtkvhhaniqaskavADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIElsrtqdeevgDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGvdlgqglrevdikkyikvekvpggqledsrvlkgvmfnkdvvapgkmrrkivnpriilldspleykkgenqtnaelvkeedWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKAcgavivnrpdelqesdvgTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNiiknpklvpgggATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKV
MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKV
**********************ANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAA**************GDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKG***TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVS*********IEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTA*****
*HSPVLV****************NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK*
MHSPVLVLKDSLK********HANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSR********GTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKV
**SPVL*LKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK*
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MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLxxxxxxxxxxxxxxxxxxxxxPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
Q3T0K2545 T-complex protein 1 subun yes no 0.991 0.855 0.638 0.0
Q6P502545 T-complex protein 1 subun yes no 0.991 0.855 0.641 1e-180
P80318545 T-complex protein 1 subun yes no 0.991 0.855 0.638 1e-180
Q5NVF9545 T-complex protein 1 subun yes no 0.991 0.855 0.634 1e-179
Q4R963545 T-complex protein 1 subun N/A no 0.991 0.855 0.636 1e-179
P49368545 T-complex protein 1 subun yes no 0.991 0.855 0.634 1e-179
P50143547 T-complex protein 1 subun N/A no 0.993 0.853 0.641 1e-179
Q9LKI7558 T-complex protein 1 subun N/A no 0.989 0.833 0.604 1e-175
O74341528 T-complex protein 1 subun yes no 0.993 0.884 0.599 1e-170
P48605544 T-complex protein 1 subun yes no 0.978 0.845 0.631 1e-170
>sp|Q3T0K2|TCPG_BOVIN T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/468 (63%), Positives = 379/468 (80%), Gaps = 2/468 (0%)

Query: 2   HSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDG 61
           H PVLVL  + KRESG KV   NI A+K +ADIIRT LGP+SM+KMLLD  GGIV+TNDG
Sbjct: 4   HRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDG 63

Query: 62  NAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVIC 121
           NAILRE+ V HPAAKSMIE+SRTQDEEVGDGTTSVI+LAGEML VAE F+++  HPTV+ 
Sbjct: 64  NAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVI 123

Query: 122 RAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 181
            AY KAL+D ++ L KI++P+DT++R TML ++ S I TK  S++  L  ++A+DA  TV
Sbjct: 124 SAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTV 183

Query: 182 GVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILL 241
             +   G +E+DIKKY +VEK+PGG +EDS VL+GVM NKDV  P +MRR I NPRI+LL
Sbjct: 184 QFE-ENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP-RMRRYIKNPRIVLL 241

Query: 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLAC 301
           DS LEYKKGE+QT+ E+ +EED+  +L+MEEEYI+ LC  I++ KPD+VITEKG+SDLA 
Sbjct: 242 DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQ 301

Query: 302 HYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFA 361
           HYL +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F 
Sbjct: 302 HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFT 361

Query: 362 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSAT 421
           FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  
Sbjct: 362 FITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 421

Query: 422 LKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469
           L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ K
Sbjct: 422 LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAK 469
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Bos taurus (taxid: 9913)
>sp|Q6P502|TCPG_RAT T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1 Back     alignment and function description
>sp|P80318|TCPG_MOUSE T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1 Back     alignment and function description
>sp|Q5NVF9|TCPG_PONAB T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R963|TCPG_MACFA T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1 Back     alignment and function description
>sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4 Back     alignment and function description
>sp|P50143|TCPG_XENLA T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LKI7|TCPG_THAWE T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1 Back     alignment and function description
>sp|O74341|TCPG_SCHPO T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct3 PE=1 SV=1 Back     alignment and function description
>sp|P48605|TCPG_DROME T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
147784740557 hypothetical protein VITISV_000290 [Viti 0.997 0.842 0.946 0.0
225463163557 PREDICTED: T-complex protein 1 subunit g 0.997 0.842 0.944 0.0
255577568554 chaperonin containing t-complex protein 0.995 0.844 0.938 0.0
242036525558 hypothetical protein SORBIDRAFT_01g04322 0.997 0.840 0.914 0.0
357124233558 PREDICTED: T-complex protein 1 subunit g 0.997 0.840 0.908 0.0
115468394558 Os06g0538000 [Oryza sativa Japonica Grou 0.997 0.840 0.914 0.0
222635702 617 hypothetical protein OsJ_21589 [Oryza sa 0.997 0.760 0.914 0.0
224144426556 predicted protein [Populus trichocarpa] 0.997 0.843 0.936 0.0
224033583558 unknown [Zea mays] gi|413926062|gb|AFW65 0.997 0.840 0.906 0.0
414865473558 TPA: putative TCP-1/cpn60 chaperonin fam 0.997 0.840 0.910 0.0
>gi|147784740|emb|CAN74796.1| hypothetical protein VITISV_000290 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/469 (94%), Positives = 457/469 (97%)

Query: 1   MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTND 60
           M +PVLVLKDSLKRESG+KV HANIQASKAVADIIRTTLGPRSMLKMLLDA GGIVVTND
Sbjct: 1   MQAPVLVLKDSLKRESGSKVQHANIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60

Query: 61  GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVI 120
           GNAILRELD+AHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAE FIDK+YHPTVI
Sbjct: 61  GNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKSYHPTVI 120

Query: 121 CRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTT 180
           CRAYNKALEDA+AVLDKIAM ID  DR+T+LGLVKSCIGTKFTSQFGDLIADLAIDATTT
Sbjct: 121 CRAYNKALEDAIAVLDKIAMSIDVKDRSTVLGLVKSCIGTKFTSQFGDLIADLAIDATTT 180

Query: 181 VGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIIL 240
           VGVDLGQGLREVDIKKYIKVEKVPGGQLEDS+VLKGVM NKDV+APGKMRRKIVNPRIIL
Sbjct: 181 VGVDLGQGLREVDIKKYIKVEKVPGGQLEDSKVLKGVMINKDVIAPGKMRRKIVNPRIIL 240

Query: 241 LDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLA 300
           LD PLEYKKGENQTNAELVKEEDW VLLKMEEEYIE++CMQILKFKPDLVITEKGLSDLA
Sbjct: 241 LDCPLEYKKGENQTNAELVKEEDWGVLLKMEEEYIESICMQILKFKPDLVITEKGLSDLA 300

Query: 301 CHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFF 360
           CHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFF
Sbjct: 301 CHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFF 360

Query: 361 AFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSA 420
           AFIVDCKDPKACTVLLRG SKDLLNEVERNLQDAM VARNIIKNPKLVPGGGATELTVSA
Sbjct: 361 AFIVDCKDPKACTVLLRGPSKDLLNEVERNLQDAMCVARNIIKNPKLVPGGGATELTVSA 420

Query: 421 TLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469
           TLKQKSSSIEGIEKWPYEAAA+AFEAIPRTLAQNCG+NVIRTMTALQGK
Sbjct: 421 TLKQKSSSIEGIEKWPYEAAAVAFEAIPRTLAQNCGVNVIRTMTALQGK 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225463163|ref|XP_002268799.1| PREDICTED: T-complex protein 1 subunit gamma [Vitis vinifera] gi|296084839|emb|CBI27721.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577568|ref|XP_002529662.1| chaperonin containing t-complex protein 1, gamma subunit, tcpg, putative [Ricinus communis] gi|223530888|gb|EEF32749.1| chaperonin containing t-complex protein 1, gamma subunit, tcpg, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242036525|ref|XP_002465657.1| hypothetical protein SORBIDRAFT_01g043220 [Sorghum bicolor] gi|241919511|gb|EER92655.1| hypothetical protein SORBIDRAFT_01g043220 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357124233|ref|XP_003563808.1| PREDICTED: T-complex protein 1 subunit gamma-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|115468394|ref|NP_001057796.1| Os06g0538000 [Oryza sativa Japonica Group] gi|53793115|dbj|BAD54324.1| putative CCT chaperonin gamma subunit [Oryza sativa Japonica Group] gi|113595836|dbj|BAF19710.1| Os06g0538000 [Oryza sativa Japonica Group] gi|215697698|dbj|BAG91692.1| unnamed protein product [Oryza sativa Japonica Group] gi|218198338|gb|EEC80765.1| hypothetical protein OsI_23266 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222635702|gb|EEE65834.1| hypothetical protein OsJ_21589 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|224144426|ref|XP_002325286.1| predicted protein [Populus trichocarpa] gi|222862161|gb|EEE99667.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224033583|gb|ACN35867.1| unknown [Zea mays] gi|413926062|gb|AFW65994.1| putative TCP-1/cpn60 chaperonin family protein [Zea mays] Back     alignment and taxonomy information
>gi|414865473|tpg|DAA44030.1| TPA: putative TCP-1/cpn60 chaperonin family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2151084555 AT5G26360 [Arabidopsis thalian 0.997 0.845 0.925 5.9e-231
UNIPROTKB|Q3T0K2545 CCT3 "T-complex protein 1 subu 0.991 0.855 0.638 5.7e-162
RGD|735038545 Cct3 "chaperonin containing Tc 0.991 0.855 0.641 4e-161
MGI|MGI:104708545 Cct3 "chaperonin containing Tc 0.991 0.855 0.638 6.5e-161
UNIPROTKB|F1PDX9476 CCT3 "Uncharacterized protein" 0.987 0.974 0.637 2.2e-160
UNIPROTKB|P49368545 CCT3 "T-complex protein 1 subu 0.991 0.855 0.634 2.8e-160
UNIPROTKB|E2RB79549 CCT3 "Uncharacterized protein" 0.991 0.848 0.634 3.6e-160
ASPGD|ASPL0000038552538 AN3134 [Emericella nidulans (t 0.995 0.869 0.619 2.6e-157
ZFIN|ZDB-GENE-020419-5543 cct3 "chaperonin containing TC 0.993 0.860 0.622 5.5e-157
UNIPROTKB|G4MKN9541 MGG_06639 "T-complex protein 1 0.995 0.865 0.619 4e-154
TAIR|locus:2151084 AT5G26360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2228 (789.4 bits), Expect = 5.9e-231, P = 5.9e-231
 Identities = 434/469 (92%), Positives = 455/469 (97%)

Query:     1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTND 60
             MH+PVLVL DSLKRESG+KVHH NIQASKAVADIIRTTLGPRSMLKMLLDA GGIVVTND
Sbjct:     1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60

Query:    61 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVI 120
             GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAE F++KNYHPTVI
Sbjct:    61 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVI 120

Query:   121 CRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTT 180
             CRAY KALED++AVLDKIAM ID NDR+ +LGLVKSCIGTKFTSQFGDLIADLAIDATTT
Sbjct:   121 CRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKFTSQFGDLIADLAIDATTT 180

Query:   181 VGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIIL 240
             VGVDLGQGLREVDIKKYIKVEKVPGGQ EDS VLKGVMFNKDVVAPGKM+RKIVNPRIIL
Sbjct:   181 VGVDLGQGLREVDIKKYIKVEKVPGGQFEDSEVLKGVMFNKDVVAPGKMKRKIVNPRIIL 240

Query:   241 LDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLA 300
             LD PLEYKKGENQTNAELV+EEDWEVLLK+EEEYIEN+C+QILKFKPDLVITEKGLSDLA
Sbjct:   241 LDCPLEYKKGENQTNAELVREEDWEVLLKLEEEYIENICVQILKFKPDLVITEKGLSDLA 300

Query:   301 CHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFF 360
             CHY SKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESD+GTGAGLFEVKKIGD+FF
Sbjct:   301 CHYFSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDIGTGAGLFEVKKIGDDFF 360

Query:   361 AFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSA 420
             +FIVDCK+PKACTVLLRG SKD +NEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSA
Sbjct:   361 SFIVDCKEPKACTVLLRGPSKDFINEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSA 420

Query:   421 TLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469
             TLKQKS++IEGIEKWPYEAAAIAFEAIPRTLAQNCG+NVIRTMTALQGK
Sbjct:   421 TLKQKSATIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGK 469
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
UNIPROTKB|Q3T0K2 CCT3 "T-complex protein 1 subunit gamma" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|735038 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:104708 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDX9 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49368 CCT3 "T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB79 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ASPGD|ASPL0000038552 AN3134 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-5 cct3 "chaperonin containing TCP1, subunit 3 (gamma)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G4MKN9 MGG_06639 "T-complex protein 1 subunit gamma" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8SR76TCPG_ENCCUNo assigned EC number0.44240.94680.8574yesno
O28045THSA_ARCFUNo assigned EC number0.39780.98080.8458yesno
Q9LKI7TCPG_THAWENo assigned EC number0.60460.98930.8333N/Ano
Q9V2T5THSA_SULACNo assigned EC number0.36190.99140.8351yesno
O00782TCPG_OXYGRNo assigned EC number0.61060.99140.8336N/Ano
Q9HN70THSA_HALSANo assigned EC number0.34400.97870.8185yesno
Q54TH8TCPG_DICDINo assigned EC number0.57350.99570.8830yesno
P48605TCPG_DROMENo assigned EC number0.63110.97870.8455yesno
P49368TCPG_HUMANNo assigned EC number0.63460.99140.8550yesno
P48424THSA_THEACNo assigned EC number0.39690.97870.8440yesno
O24734THSA_SULTONo assigned EC number0.35710.98930.8318yesno
Q9V2S9THSA_SULSONo assigned EC number0.36260.99140.8336yesno
Q9V2Q7THS_PYRABNo assigned EC number0.39040.97230.8309yesno
Q5NVF9TCPG_PONABNo assigned EC number0.63460.99140.8550yesno
P54408TCPG_TETPYNo assigned EC number0.61480.98930.8318N/Ano
P50143TCPG_XENLANo assigned EC number0.64170.99360.8537N/Ano
O26885THSB_METTHNo assigned EC number0.39400.97230.8494yesno
O57762THS_PYRHONo assigned EC number0.39690.97230.8324yesno
P80318TCPG_MOUSENo assigned EC number0.63880.99140.8550yesno
O30561THS1_HALVDNo assigned EC number0.35620.97440.8178yesno
Q58405THS_METJANo assigned EC number0.39520.97440.8450yesno
Q9YDK6THSA_AERPENo assigned EC number0.39690.98080.8321yesno
Q52500THSB_PYRKONo assigned EC number0.39040.97230.8369yesno
O74341TCPG_SCHPONo assigned EC number0.59910.99360.8844yesno
Q4R963TCPG_MACFANo assigned EC number0.63670.99140.8550N/Ano
Q6P502TCPG_RATNo assigned EC number0.64100.99140.8550yesno
P50016THS_METKANo assigned EC number0.40120.97870.8440yesno
P39077TCPG_YEASTNo assigned EC number0.58100.99570.8764yesno
Q3T0K2TCPG_BOVINNo assigned EC number0.63880.99140.8550yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb01g043220.1
hypothetical protein (558 aa)
(Sorghum bicolor)
Predicted Functional Partners:
Sb04g035610.1
hypothetical protein (546 aa)
  ••••••0.641
Sb02g043440.1
hypothetical protein (535 aa)
  ••••••0.637
Sb04g004030.1
hypothetical protein (561 aa)
  ••••••0.607
Sb03g009490.1
hypothetical protein (525 aa)
  ••••••0.601
Sb03g005190.1
hypothetical protein (510 aa)
  ••••••0.579
Sb05g022470.1
hypothetical protein (548 aa)
  ••••••0.564
Sb01g049370.1
hypothetical protein (535 aa)
  ••••••0.562
Sb02g001450.1
hypothetical protein (536 aa)
  ••••••0.560
Sb10g022220.1
hypothetical protein (535 aa)
  ••••••0.558
Sb04g034020.1
hypothetical protein (498 aa)
  •••   0.515

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 0.0
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-171
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-149
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-142
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-138
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-127
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-110
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-107
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-104
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-104
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-103
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 7e-95
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 7e-84
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 7e-84
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 2e-81
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 7e-81
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-76
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 4e-75
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 3e-72
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 2e-69
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 8e-67
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-57
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 2e-39
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 1e-12
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-09
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 2e-09
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 2e-09
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 7e-09
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-07
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 2e-06
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-05
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-04
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 4e-04
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information 
 Score =  845 bits (2185), Expect = 0.0
 Identities = 334/466 (71%), Positives = 399/466 (85%), Gaps = 1/466 (0%)

Query: 4   PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNA 63
           PVLVL  + KRESG K   +NIQA+KAVADIIRTTLGPR+MLKMLLD  GGIV+TNDGNA
Sbjct: 1   PVLVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNA 60

Query: 64  ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 123
           ILRE+DVAHPAAKSMIELSRTQDEEVGDGTTSVI+LAGEML VAE F+++N HPT+I RA
Sbjct: 61  ILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRA 120

Query: 124 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGV 183
           Y KAL+DA++VL++I++P+D ND A ML L++SCIGTKF S++ DL+ DLA+DA  TV  
Sbjct: 121 YKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKR 180

Query: 184 DLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243
           DLG G +E+DIK+Y KVEK+PGG +EDS VLKGVM NKDV  P KMRR I NPRI+LLD 
Sbjct: 181 DLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP-KMRRYIENPRIVLLDC 239

Query: 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHY 303
           PLEYKKGE+QTN E++KEEDW  +L+MEEEY++ +C  I+  KPDLVITEKG+SDLA HY
Sbjct: 240 PLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHY 299

Query: 304 LSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 363
           L KA +SAIRR+RKTDNNRIA+ACGA IVNRP+EL+ESDVGTG GLFEVKKIGDE+F F 
Sbjct: 300 LLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFF 359

Query: 364 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLK 423
            +CKDPKACT+LLRGASKD+LNE+ERNLQDAM+VARN++  PKL+PGGGATE+ VS  L 
Sbjct: 360 TECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLA 419

Query: 424 QKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469
           +K+S +EG+++WPY A A A E IPRTLAQNCG+NVIRT+T L+ K
Sbjct: 420 KKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAK 465

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information 
Probab=100.00  E-value=5.1e-97  Score=777.43  Aligned_cols=462  Identities=72%  Similarity=1.127  Sum_probs=443.1

Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhh
Q 012157            6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ   85 (470)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~   85 (470)
                      .+++++.++.+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q   82 (525)
T TIGR02344         3 LVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ   82 (525)
T ss_pred             eeccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccc
Q 012157           86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQ  165 (470)
Q Consensus        86 ~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~  165 (470)
                      ++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++..+.+.|.++++|++++|+.++
T Consensus        83 ~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~  162 (525)
T TIGR02344        83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSR  162 (525)
T ss_pred             hhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchh
Confidence            99999999999999999999999999999999999999999999999999999999987778889999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccc
Q 012157          166 FGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPL  245 (470)
Q Consensus       166 ~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~L  245 (470)
                      |.++|++++++|+..++++..++...+|++++|+|++++|++++||++++|++|++++.++ .||++++||+|++++++|
T Consensus       163 ~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~L  241 (525)
T TIGR02344       163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP-KMRRYIENPRIVLLDCPL  241 (525)
T ss_pred             HHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC-CCccccCCCCEEEEeccc
Confidence            9999999999999999763212223677766799999999999999999999999999998 899999999999999999


Q ss_pred             ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHH
Q 012157          246 EYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAK  325 (470)
Q Consensus       246 e~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~  325 (470)
                      ++++++.+.++.+++++++..+++.|++++++++++|.+.|++||+++++|++.++++|.++||++++++++++|+|||+
T Consensus       242 e~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~  321 (525)
T TIGR02344       242 EYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIAR  321 (525)
T ss_pred             ccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012157          326 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP  405 (470)
Q Consensus       326 ~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~  405 (470)
                      +|||++++++++++++++|+.|+.|+++++|+++|++|++|++++.+||+|||+|+.+++|+||+++||+++++++++++
T Consensus       322 ~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~  401 (525)
T TIGR02344       322 ACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEP  401 (525)
T ss_pred             HhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999996599999999999999999999989999999999999999999999999999999999999


Q ss_pred             eEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157          406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG  468 (470)
Q Consensus       406 ~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~  468 (470)
                      ++|||||++|++||.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus       402 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~  464 (525)
T TIGR02344       402 KLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRA  464 (525)
T ss_pred             CcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            999999999999999999998888999999999999999999999999999999999999986

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-179
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-132
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 4e-91
1a6d_A545 Thermosome From T. Acidophilum Length = 545 3e-90
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-90
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 7e-90
1a6d_B543 Thermosome From T. Acidophilum Length = 543 2e-89
3izh_A513 Mm-Cpn D386a With Atp Length = 513 7e-86
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 8e-86
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 3e-85
3izi_A513 Mm-Cpn Rls With Atp Length = 513 4e-85
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 4e-82
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 5e-82
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 3e-81
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 4e-81
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 1e-77
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 6e-75
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-73
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-71
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 2e-70
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-67
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-66
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-64
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-60
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-59
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-57
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-53
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-48
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-47
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-47
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-41
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-41
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 5e-24
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 1e-18
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 7e-09
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 6e-08
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 6e-08
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 6e-08
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 6e-08
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 6e-08
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 6e-08
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 7e-08
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-07
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-07
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 1e-07
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-07
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 1e-07
1ss8_A524 Groel Length = 524 1e-07
1oel_A 547 Conformational Variability In The Refined Structure 1e-07
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 5e-07
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-06
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 3e-05
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  623 bits (1607), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 293/457 (64%), Positives = 372/457 (81%), Gaps = 2/457 (0%)
Query: 13  KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAH 72
           KRESG KV   NI A+K +ADIIRT LGP+SM+KMLLD  GGIV+TNDGNAILRE+ V H
Sbjct: 3   KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62
Query: 73  PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAV 132
           PAAKSMIE+SRTQDEEVGDGTTSVI+LAGEML VAE F+++  HPTV+  AY KAL+D +
Sbjct: 63  PAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMI 122
Query: 133 AVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREV 192
           + L KI++P+DT++R TML ++ S I TK  S++  L  ++A+DA  TV  +   G +E+
Sbjct: 123 STLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFE-ENGRKEI 181
Query: 193 DIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252
           DIKKY +VEK+PGG +EDS VL+GVM NKDV  P +MRR I NPRI+LLDS LEYKKGE+
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP-RMRRYIKNPRIVLLDSSLEYKKGES 240
Query: 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAI 312
           QT+ E+ +EED+  +L+MEEEYI+ LC  I++ KPD+VITEKG+SDLA HYL +A ++AI
Sbjct: 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAI 300
Query: 313 RRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKAC 372
           RR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKAC
Sbjct: 301 RRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKAC 360
Query: 373 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 432
           T+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+
Sbjct: 361 TILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGV 420
Query: 433 EKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469
           E+WPY A A A E IPRTL QNCG + IR +T+L+ K
Sbjct: 421 EQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAK 457
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 6e-82
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 3e-67
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 1e-06
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 2e-06
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 4e-06
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 8e-06
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
 Score =  661 bits (1708), Expect = 0.0
 Identities = 293/457 (64%), Positives = 371/457 (81%), Gaps = 2/457 (0%)

Query: 13  KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAH 72
           KRESG KV   NI A+K +ADIIRT LGP+SM+KMLLD  GGIV+TNDGNAILRE+ V H
Sbjct: 3   KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62

Query: 73  PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAV 132
           PAAKSMIE+SRTQDEEVGDGTTSVI+LAGEML VAE F+++  HPTV+  AY KAL+D +
Sbjct: 63  PAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMI 122

Query: 133 AVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREV 192
           + L KI++P+DT++R TML ++ S I TK  S++  L  ++A+DA  TV  +   G +E+
Sbjct: 123 STLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFE-ENGRKEI 181

Query: 193 DIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252
           DIKKY +VEK+PGG +EDS VL+GVM NKDV  P  MRR I NPRI+LLDS LEYKKGE+
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR-MRRYIKNPRIVLLDSSLEYKKGES 240

Query: 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAI 312
           QT+ E+ +EED+  +L+MEEEYI+ LC  I++ KPD+VITEKG+SDLA HYL +A ++AI
Sbjct: 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAI 300

Query: 313 RRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKAC 372
           RR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKAC
Sbjct: 301 RRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKAC 360

Query: 373 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 432
           T+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+
Sbjct: 361 TILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGV 420

Query: 433 EKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469
           E+WPY A A A E IPRTL QNCG + IR +T+L+ K
Sbjct: 421 EQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAK 457
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.34
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.29
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.26
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
Probab=100.00  E-value=5.6e-103  Score=821.13  Aligned_cols=464  Identities=38%  Similarity=0.653  Sum_probs=446.7

Q ss_pred             CCCCccccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHH
Q 012157            1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE   80 (470)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~   80 (470)
                      |+.|+.++++++++.+|.+++.+|+.||.+++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++
T Consensus         5 ~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e   84 (548)
T 1q3q_A            5 SGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVE   84 (548)
T ss_dssp             ----CCCSCTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHH
T ss_pred             CCCCcccccCCcceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhc
Q 012157           81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGT  160 (470)
Q Consensus        81 ~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~s  160 (470)
                      +|++||+++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++..|++.|.++++|+|+|
T Consensus        85 ~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~s  164 (548)
T 1q3q_A           85 VAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITG  164 (548)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCS
T ss_pred             HHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999877899999999999999


Q ss_pred             ccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEE
Q 012157          161 KFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIIL  240 (470)
Q Consensus       161 k~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll  240 (470)
                      |+.++|+++|++++++|+.+++.+. .|...+|++ +|+|++++|++++||++++|++|++++.|+ .||++++||||++
T Consensus       165 Ki~~~~~~~i~~livdAv~~V~~~~-~g~~~~d~~-~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~-~m~~~ien~kIll  241 (548)
T 1q3q_A          165 KNAESHKELLAKLAVEAVKQVAEKK-DGKYVVDLD-NIKFEKKAGEGVEESELVRGVVIDKEVVHP-RMPKRVENAKIAL  241 (548)
T ss_dssp             STTGGGHHHHHHHHHHHHHHHCEES-SSSEECCGG-GEEEEEEEBSCGGGCEEESSEEESCCCSST-TSCSEESSEEEEE
T ss_pred             cccccchHHHHHHHHHHHHHhcccc-CCCccccCC-eEEEEEecCCCccceEEEeeEEEeccCCCC-CCcceecCCEEEE
Confidence            9999999999999999999998532 133457775 699999999999999999999999999998 8999999999999


Q ss_pred             EecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHH
Q 012157          241 LDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDN  320 (470)
Q Consensus       241 ~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L  320 (470)
                      ++++|++++++.++++.++++++++.+.+.|++++++++++|++.|+||||++++|++.+++||.++||++++++++++|
T Consensus       242 ~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~l  321 (548)
T 1q3q_A          242 INEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDM  321 (548)
T ss_dssp             ECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHH
T ss_pred             EecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 012157          321 NRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN  400 (470)
Q Consensus       321 ~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~  400 (470)
                      +|||++|||++++++++++++++|+ |+.|++.++|+++|++|++|++++.+||+|||+|+.+++|.||+++||++++|+
T Consensus       322 e~ia~~tGa~ii~~l~~~~~~~LG~-a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~  400 (548)
T 1q3q_A          322 EKLAKATGAKIVTNVKDLTPEDLGY-AEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKD  400 (548)
T ss_dssp             HHHHHHHCCCCBSSGGGCCGGGCEE-ESEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEecccccCCHHHCCC-ceEEEEEEecCceEEEEecCCCCCeEEEEECCCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157          401 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG  468 (470)
Q Consensus       401 ~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~  468 (470)
                      ++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++++||+
T Consensus       401 a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~  468 (548)
T 1q3q_A          401 VMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVIS  468 (548)
T ss_dssp             HHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999999999998888899999999999999999999999999999999999985
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 5e-51
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 1e-43
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 3e-42
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 1e-40
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 4e-33
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 5e-07
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-32
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 6e-32
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 4e-05
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 1e-25
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-22
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 8e-20
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 4e-18
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 2e-15
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 3e-09
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  168 bits (427), Expect = 5e-51
 Identities = 120/169 (71%), Positives = 143/169 (84%), Gaps = 1/169 (0%)

Query: 210 DSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLK 269
           DS VL+GVM NKDV  P  MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+  +L+
Sbjct: 1   DSCVLRGVMINKDVTHPR-MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQ 59

Query: 270 MEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGA 329
           MEEEYI  LC  I++ KPD+VITEKG+SDLA HYL +A V+AIRR+RKTDNNRIA+ACGA
Sbjct: 60  MEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGA 119

Query: 330 VIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRG 378
            IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRG
Sbjct: 120 RIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.98
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.95
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.93
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.93
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.6
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.6
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.53
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.35
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.34
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.29
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.26
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.23
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 98.39
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 97.67
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 97.16
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 96.17
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 95.13
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 94.13
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 93.47
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 87.09
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=1.2e-39  Score=304.62  Aligned_cols=123  Identities=50%  Similarity=0.796  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCChhHHH
Q 012157           18 TKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVI   97 (470)
Q Consensus        18 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v   97 (470)
                      .++++.|+.||+.++++|++||||+|++|||+++.|+++|||||+||++++.++||+++++++++++|++++||||||++
T Consensus         1 ~~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~   80 (243)
T d1a6db1           1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAV   80 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccc
Q 012157           98 VLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAM  140 (470)
Q Consensus        98 lL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~  140 (470)
                      +|+++||+++.+++..|+||..|++||+.+++.+++.|++++.
T Consensus        81 vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~  123 (243)
T d1a6db1          81 IIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEIST  123 (243)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999888866533
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure