Citrus Sinensis ID: 012159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcEEEEccccccccEEEEEcccccccccEEEEcccccEEEEEEEcEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
MAKLTLGAEKFFVFAhntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwknipqrykligTTSLAFVICNMDKVNLSVAIIpmshrfgwnssvaglvqssffwgyalsqlpggwlakifggrkvLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGigegvspsaaTDLIarsipleersRAVSFVFGGLsfgsvaglllappiienlgweSVFYIFGLLGIawfsgfkilqegetsngatlaprsnyINMKKSLSASLEEMGEslkdvpwkaIFRSKAVWAMIYAHFcgswghytclswlptyfseelslnlTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGitntvgavpGIVGVALTGYLldsthswsmslfapSIFFYLTGTIVWLAFasskpqnfstrd
Flexible Loop (DISEMBL)
MAKLTLGAEKFFvfahntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwkniPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETsngatlaprsnYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAsskpqnfstrd
Low Complexity Region (SEG)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD
Disordered region (IsUnstruct)
*****LGAEKFFVFAHNTSSGRLVFA*********FHLYP**GCSRLRVS**********************************************VGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE********************************LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA***********
Disordered Region (DISOPRED)
*********KF***AHNTSSGRLVFAKRNSSKR*********************************************************************WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ**************************************WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK*QN*****
Disordered Region (DISEMBL)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASS*********
Disordered Region (DISPRO)
*AKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKE*********************************************WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q3E9A0	517	Probable anion transporte	yes	no	0.934	0.849	0.550	1e-150
Q0IZQ3	471	Probable anion transporte	yes	no	0.502	0.501	0.662	3e-87
Q652N5	591	Probable anion transporte	yes	no	0.806	0.641	0.354	7e-66
Q9SDI4	529	Probable anion transporte	no	no	0.642	0.570	0.401	4e-64
O82390	512	Sodium-dependent phosphat	no	no	0.687	0.630	0.377	8e-64
Q8GX78	541	Probable anion transporte	no	no	0.776	0.674	0.353	5e-62
Q8W0H5	519	Probable anion transporte	no	no	0.657	0.595	0.389	1e-46
Q7XJR2	512	Probable anion transporte	no	no	0.761	0.699	0.325	6e-45
Q66GI9	533	Probable anion transporte	no	no	0.663	0.585	0.36	3e-44
Q2QWW7	439	Probable anion transporte	no	no	0.672	0.719	0.314	2e-40

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  530 bits (1366), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 301/547 (55%), Positives = 346/547 (63%), Gaps = 108/547 (19%)

Query: 1   MAKLTLGAEKFF----VFAHNTS--SGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIK 54
           MA+LTL     F    ++AH     S   +F   + +   K            RV CS  
Sbjct: 1   MARLTLRPHNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIK-----------SRVKCSAS 49

Query: 55  EKENVKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNI 109
             E V+E       D  ++    L + E  S               E G    WPPWKNI
Sbjct: 50  GTERVRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNI 95

Query: 110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPG 169
           PQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPG
Sbjct: 96  PQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPG 155

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
           GWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIA
Sbjct: 156 GWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIA 215

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L
Sbjct: 216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query: 290 QEGETSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348
            E E S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCG
Sbjct: 276 NEEEVSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCG 329

Query: 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408
           SWGHYTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT 
Sbjct: 330 SWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTT 389

Query: 409 --GITNTVGAV-PGIV---------------------GVALTGYLLD---STH------- 434
              I  T+  V P I                      G+AL+ + L     TH       
Sbjct: 390 VRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEY 449

Query: 435 -------------------------------SWSMSLFAPSIFFYLTGTIVWLAFASSKP 463
                                          SW+MSLF PSIFFYLTGT+VWLAFASS+P
Sbjct: 450 ASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSEP 509

Query: 464 QNFSTRD 470
           Q F   D
Sbjct: 510 QTFRKED 516

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0IZQ3|PHT45_ORYSJ Probable anion transporter 5, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;5 PE=2 SV=2

 Score =  322 bits (826), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/249 (66%), Positives = 193/249 (77%), Gaps = 13/249 (5%)

Query: 172 LAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS 231
           L  +    +VL+ GV+ WSLATA++P +AGFMPGLVLSR+LVGIGEGVSPSAATDLIARS
Sbjct: 91  LTVVVMNMRVLEIGVVAWSLATAIIPAVAGFMPGLVLSRILVGIGEGVSPSAATDLIARS 150

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291
           IP++ERSRAV+ VFGGLSFGSV GLL APPII+NLGWESVFYIFGLLGI W  GF+ L+E
Sbjct: 151 IPVQERSRAVAVVFGGLSFGSVLGLLFAPPIIQNLGWESVFYIFGLLGIIWCLGFQSLKE 210

Query: 292 GETSNGATLAPRSNY-------------INMKKSLSASLEEMGESLKDVPWKAIFRSKAV 338
            +      +    +                  KS  +SL E+  SLKDVPW+  F+SKAV
Sbjct: 211 QQLRGNEDIQVIQDLGQSPSGSSDLISSSVSPKSSESSLGELMNSLKDVPWREFFKSKAV 270

Query: 339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN 398
           WAMIYAHFCGSWGHYTCLSWLPT+FSEEL LNLTEAAWVS+LPPL S+++TSIAA FADN
Sbjct: 271 WAMIYAHFCGSWGHYTCLSWLPTFFSEELDLNLTEAAWVSVLPPLGSMIITSIAAPFADN 330

Query: 399 LIATGVETT 407
           LI+ GV+TT
Sbjct: 331 LISNGVDTT 339

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  251 bits (642), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 226/401 (56%), Gaps = 22/401 (5%)

Query: 43  GCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASY 102
            C +      ++ + + K E  +    +TG     P S S   +E+  +  T E+     
Sbjct: 125 ACVQPDYKIPVRTRADCKAEQYE----ITG----SPLSPSDVPAEAVLIGDTNEIS---- 172

Query: 103 WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGY 162
            P W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  FGW+ +  GL+QSSFFWGY
Sbjct: 173 -PWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGY 231

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSP 221
            L+Q+ GG  A  FGG+ VL  GV+ WS+AT L PL A   +P L++ R  +GIGEGV+ 
Sbjct: 232 LLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAM 291

Query: 222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
            A  +++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY FG LG  
Sbjct: 292 PAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSV 351

Query: 282 WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM 341
           WF+    L + +  +  +  P  +    +  L  S   + E +  +PWK I     VWA+
Sbjct: 352 WFA----LWQRKAHSSPSEDPELSKAEKRYILGGS--TLKEPVTSIPWKLILSKPPVWAL 405

Query: 342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401
           I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I    AD L+ 
Sbjct: 406 IVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVG 465

Query: 402 TGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFA 442
            GV  T  +   + ++ G +G AL   LL    + +M++  
Sbjct: 466 RGVSIT-NVRKIMQSI-GFLGPALFLTLLSKVRTPAMAVLC 504

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 9/311 (2%)

Query: 108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQL 167
             P+R+ ++     AF++CNMD+VN+S+AI+PMS  FGWN    GL+QSSFFWGY L+Q+
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 168 PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATD 226
            GG  A   GG+ VL  GV+ WS+ATAL P  A   +P L+++R  +G+GEGV+  A  +
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF 286
           ++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I N GW SVFY FG LG+ WFS +
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
                        ++        +K L  S    GE +K++PW  I     VWA+I +HF
Sbjct: 295 ASKAYSSPLEDPGISAE------EKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHF 348

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG--V 404
           C +WG +  L+W+PTY+++ L  NLTE+    +LP L   +  +     AD L++ G  V
Sbjct: 349 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSV 408

Query: 405 ETTMGITNTVG 415
            T   I  ++G
Sbjct: 409 TTVRKIMQSIG 419

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  244 bits (624), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 194/336 (57%), Gaps = 13/336 (3%)

Query: 87  ESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH 142
           E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+VN+S+AI+PMS 
Sbjct: 73  EGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
            +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+AT L P+ A  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
            +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  GSV GL  +P 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
           +I   GW SVFY FG LG  W + +    E       TL P       ++ L A      
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------ERKLIADNCASK 306

Query: 322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
           E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  NL E+  +S+ P
Sbjct: 307 EPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFP 366

Query: 382 PLASVLVTSIAAQFADNLIATG--VETTMGITNTVG 415
            +   +  +     AD L++ G  V     I  T+G
Sbjct: 367 WMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIG 402

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  239 bits (609), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 214/388 (55%), Gaps = 23/388 (5%)

Query: 28  RNSSKRQKFHLYPSEGC-------SRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGS 80
           + S   +  H+  S GC       S +R   SIK   +      +  ++  G+     GS
Sbjct: 49  QASLHHESGHMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGS 108

Query: 81  VSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPM 140
                +E+  V G  +   AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PM
Sbjct: 109 -----AEAILVEGNLQ--NASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPM 159

Query: 141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA 200
           S  + W+S+  GL+QSSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A
Sbjct: 160 SQEYNWSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAA 219

Query: 201 GF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
              +P L++ R  +GIGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +
Sbjct: 220 RLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFS 279

Query: 260 PPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE 319
           P +I   GW SVFY FG LG  WF  +         +   L+     + +  S      +
Sbjct: 280 PMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGS------K 333

Query: 320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI 379
             E +  +PWK I     VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +
Sbjct: 334 PREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCV 393

Query: 380 LPPLASVLVTSIAAQFADNLIATGVETT 407
           LP L   +  +I    AD L++ G+  T
Sbjct: 394 LPWLTMAVFANIGGWIADTLVSRGLSIT 421

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/316 (38%), Positives = 172/316 (54%), Gaps = 7/316 (2%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K+     LA  +CN D+V +SVAI+P+S  +GW  S AG+VQSSF WGY +S + GG
Sbjct: 96  ERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGG 155

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDLIA 229
            L   +GG++V+  GV +WSLAT L P  A     L LS RVL+G+ EGV+  +  +++ 
Sbjct: 156 ALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVL 215

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERS AV     G   G+  GLLL+P I+   G    F IFGL G  W   +   
Sbjct: 216 RWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISA 275

Query: 290 QEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSK-AVWAMIYAHFC 347
             G     A ++    +YI   + L  + +  GE L+ VP  +   SK   WA+I A+  
Sbjct: 276 ISGTPGENAQISAHELDYITRGQKLVKT-QSGGERLRKVPPFSKLLSKWPTWALISANAM 334

Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
            SWG++  LSW+P YF     +NL EAAW S LP +   ++  +A   +D LI  G   T
Sbjct: 335 HSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSIT 394

Query: 408 M--GITNTVGAV-PGI 420
           +   I  T+G V PG+
Sbjct: 395 LTRKIMQTIGFVGPGV 410

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  182 bits (461), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 133/408 (32%), Positives = 205/408 (50%), Gaps = 50/408 (12%)

Query: 26  AKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFD 85
           A++N  + +    Y SE   + R + +  +K N   E    + VLTG          G  
Sbjct: 38  ARKNQIRCENLR-YSSESDGKRRNAAA--KKRNQSPERCAAEGVLTG----------GGG 84

Query: 86  SES-GQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF 144
           SE+  +VR                +P+R K++  T+    +CN D+V +SVA++P++ + 
Sbjct: 85  SEAIAEVR--------------TMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKL 130

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204
           GW+SS  G+VQSSF WGY  S + GG L   +GG++VL  GV +WSLAT L P  A    
Sbjct: 131 GWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHST 190

Query: 205 -GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII 263
             L+  R   G+ EGV+  + T L++R  P++ER+ AV     G   G+V GLLL P ++
Sbjct: 191 LALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLML 250

Query: 264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGE- 322
            ++G    F +F  LG+ W S +        S+G T  P+ +    +  L   L + G+ 
Sbjct: 251 SSIGISGPFILFASLGLLWVSTW--------SSGVTNNPQDSPFITRSEL--RLIQAGKP 300

Query: 323 ------SLKDVPWKAIFRSK-AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
                 S K  P   +  SK   WA+I+A+   +WG++  LSW+P YF    ++NL +AA
Sbjct: 301 VQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAA 360

Query: 376 WVSILPPLASVLVTSIAAQFADNLIATG--VETTMGITNTVGAV-PGI 420
           W S LP     +    A   +D LI TG  V +   I  ++G + PG+
Sbjct: 361 WFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGL 408

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 13/325 (4%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K++   +LA  +CN D+V +SVAI+P+S   GW+ S +G+VQSSF WGY +S + GG
Sbjct: 110 ERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGG 169

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
            L   +GG+ V+  GV +WSLAT L P  A   +  L+ +R +VG+ EGV+     +++A
Sbjct: 170 TLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVA 229

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERSRAV     G   G+V GL+L+P ++   G    F IFGL G  W     ++
Sbjct: 230 RWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWL----LV 285

Query: 290 QEGETSNGATLAPRSN-----YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA 344
               TS+     P+       YI  KK +S    +   +    P+  +      WA+I A
Sbjct: 286 WLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVA 345

Query: 345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
           +   SWG +  LSW+P YF+    +NL +AAW S +P         IA  ++D LI  G 
Sbjct: 346 NSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGT 405

Query: 405 ETTM--GITNTVGAV-PGIVGVALT 426
             T+   I  ++G + PGI  + LT
Sbjct: 406 SITLTRKIMQSIGFIGPGIALIGLT 430

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 176/337 (52%), Gaps = 21/337 (6%)

Query: 110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPG 169
           P+RY ++  T +   +C +++V  S+A    +   G N +  G++ S F++GY LSQ+PG
Sbjct: 10  PKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQIPG 69

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
           GW A+  GGR+VL    ++WSL   L+PL       LVLSR+ VG+ +G    A   ++A
Sbjct: 70  GWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREVILVLSRLFVGVAQGFIFPAIHTVLA 129

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           + +P +ERSR+VS    G+  G+  G+L  P +++++G +SVF++  +LG+AW     ++
Sbjct: 130 QWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAW----SVI 185

Query: 290 QEGETSNGATLAPRSNYINMKKSLSASLEEM--------GESLKDVPWKAIFRSKAVWAM 341
               +S      PR++   +     AS E++              +PW+ I  S  VWA+
Sbjct: 186 WLKFSSE----PPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVKIPWRRIIFSLPVWAI 241

Query: 342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401
           +  +F   +  Y  ++WLPTYF   L L+L +     +LP     + ++I    AD+LI 
Sbjct: 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLIT 301

Query: 402 T---GVETTMGITNTVGAVPGIVGVALTGYLLDSTHS 435
                +  T  + NT+G V  +  VAL    L  T S
Sbjct: 302 RRILSITKTRKLLNTIGFV--VSAVALMALPLFRTPS 336

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
224120476	543	predicted protein [Populus trichocarpa]	0.995	0.861	0.598	1e-161
255586001	533	Inner membrane transport protein yjjL, p	0.846	0.746	0.714	1e-160
356546138	525	PREDICTED: probable anion transporter 6,	0.963	0.862	0.573	1e-157
224144091	535	predicted protein [Populus trichocarpa]	0.985	0.865	0.583	1e-155
359484723	526	PREDICTED: probable anion transporter 6,	0.846	0.756	0.692	1e-154
297812223	517	hypothetical protein ARALYDRAFT_910078 [	0.942	0.856	0.554	1e-149
42567984	517	putative anion transporter 6 [Arabidopsi	0.934	0.849	0.550	1e-148
356562936	524	PREDICTED: probable anion transporter 6,	0.955	0.856	0.558	1e-147
449443273	538	PREDICTED: probable anion transporter 6,	0.793	0.693	0.673	1e-146
357478369	541	hypothetical protein MTR_4g116030 [Medic	0.776	0.674	0.667	1e-142

>gi|224120476|ref|XP_002331057.1| predicted protein [Populus trichocarpa] gi|222872987|gb|EEF10118.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 326/545 (59%), Positives = 363/545 (66%), Gaps = 77/545 (14%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA  T  AE F   +H+T++   +     S K     L  S+     RV C IKEKENV 
Sbjct: 1   MANFTFKAENFSSLSHHTNTQTSLLNTTTSFKTNSLRLLHSKNSLTFRVWCGIKEKENVT 60

Query: 61  EETDKFDEVLTG-LRVDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
             +++  +VLTG  RVDE     GS   F+ + G   G+ EVG    WPPWKNIPQRYKL
Sbjct: 61  G-SERVPDVLTGPKRVDELDPKRGSSLDFEQKLGNDSGSSEVGFDWNWPPWKNIPQRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR----S 231
           FGGRKVL+ GVL WS+ATALLP LAG+MPGLVLSRVLVGIGEGVSPSAATDLIAR    S
Sbjct: 180 FGGRKVLKFGVLTWSVATALLPFLAGYMPGLVLSRVLVGIGEGVSPSAATDLIARHTLMS 239

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291
           IPLEERSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+E
Sbjct: 240 IPLEERSRAVAFVFGGLSVGSVIGLLLAPPLIQNFGWASVFYIFGFLGLAWFLGFQYLEE 299

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
           G+ S+ A  A R   I+M+KS S SL  +G SLKDVPWKA FR+ AVWAMIYAHFCGSWG
Sbjct: 300 GQASHSAKPASRPQSIHMEKSFSNSLAALGGSLKDVPWKAFFRTPAVWAMIYAHFCGSWG 359

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---- 407
           HY CLSWLP+YFSEELSLNLTEAAWVSILPPLASV VTS AAQ ADNLIA GVETT    
Sbjct: 360 HYNCLSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSFAAQLADNLIANGVETTTVRK 419

Query: 408 -------------MGITNTVGAVP--GIVGVALTGYLLDS--------THSWSMSLFAPS 444
                        M +++    +P   IVG+   G  L S        TH   MS    S
Sbjct: 420 ICQTIAFLSPALCMTLSSVDLGLPPWEIVGILTCGLALSSFALSGLYCTHQ-DMSPEYAS 478

Query: 445 IFFYLTGT---------------------------------------IVWLAFASSKPQN 465
           I   +T T                                       IVWLAFASSKPQN
Sbjct: 479 ILLGITNTVGAIPGIVGVALTGYLLDTTHSWSISLFAPSIFFYLTGTIVWLAFASSKPQN 538

Query: 466 FSTRD 470
           FS  D
Sbjct: 539 FSNTD 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586001|ref|XP_002533670.1| Inner membrane transport protein yjjL, putative [Ricinus communis] gi|223526438|gb|EEF28716.1| Inner membrane transport protein yjjL, putative [Ricinus communis]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/414 (71%), Positives = 336/414 (81%), Gaps = 16/414 (3%)

Query: 1   MAKLTLGAEKF--FVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MAK TL   K   F F  N ++    F   +  K +  HL PS+   + RV CS+KEKEN
Sbjct: 1   MAKFTLINNKADNFCFLSNNTNTHASFFNNSCLKFKNSHLIPSKRILKFRVLCSVKEKEN 60

Query: 59  VKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           VKE +++ +EV++GLRV+   + G   G DS      G +EVG    WPPWKNIPQRYKL
Sbjct: 61  VKE-SERVNEVVSGLRVEGLKQTGLQLGNDS------GLQEVGFDWNWPPWKNIPQRYKL 113

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S+AGLVQSSFFWGYALSQLPGGWL+KI
Sbjct: 114 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASMAGLVQSSFFWGYALSQLPGGWLSKI 173

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVL+ GVL+WSLATA +PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR IPLE
Sbjct: 174 FGGRKVLKIGVLVWSLATAFVPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARLIPLE 233

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSVAGLLLAPP+I+  GWESVFYIFG LGIAWF  F+ L+E ++S
Sbjct: 234 ERSRAVAFVFGGLSVGSVAGLLLAPPLIQIFGWESVFYIFGFLGIAWFLTFQFLEEEQSS 293

Query: 296 N--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
              G T +P+S Y  ++KS + SL E+  SLKDVPWKA F ++AVWAMIYAHFCGSWGHY
Sbjct: 294 FAIGPTASPQSTY--LEKSWNTSLPELSSSLKDVPWKAFFETRAVWAMIYAHFCGSWGHY 351

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
           TCLSWLP+YFSEEL+LNLTEAAWVSILPPLASV VTSIAAQFADNLIA GVETT
Sbjct: 352 TCLSWLPSYFSEELNLNLTEAAWVSILPPLASVFVTSIAAQFADNLIANGVETT 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546138|ref|XP_003541488.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 311/542 (57%), Positives = 367/542 (67%), Gaps = 89/542 (16%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA+LTL  +    F+H   +       R +S  Q+FH + S     LR+S  +   +   
Sbjct: 1   MARLTLRPDNSCFFSHTQRANSHTPFTRTTS-FQRFHFHLSSSNHTLRLSRIVSSAQQNA 59

Query: 61  EETDKFD------EVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYK 114
           +ET +        +VLT L+V+E             V    E   +  WPPWKN+PQRYK
Sbjct: 60  KETQRVSMAKAKAKVLTDLQVEE-------------VEKQHET-LSWNWPPWKNLPQRYK 105

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           LIGTTSLAF+ICNMDKVNLS+AIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAK
Sbjct: 106 LIGTTSLAFIICNMDKVNLSIAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAK 165

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL 234
           IFGG  VL+ GVLIWS+ATAL+P LAG+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPL
Sbjct: 166 IFGGGAVLEVGVLIWSVATALVPFLAGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPL 225

Query: 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET 294
           EERSRAV+ VFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET
Sbjct: 226 EERSRAVALVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGET 285

Query: 295 S-NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
             N  +L+   +   M +S   SL E+  SLKDVPWKA F+++AVWAMIYAHFCGSWGHY
Sbjct: 286 QLNAESLSSAQDI--MTQSWKTSLRELNGSLKDVPWKAFFQNRAVWAMIYAHFCGSWGHY 343

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM----- 408
            CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VTS+AAQ ADNLI+ GVETT+     
Sbjct: 344 NCLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTSLAAQLADNLISRGVETTVVRKIC 403

Query: 409 --------GITNTVGAVP------GIVGVALTGYLLDS--------TH------------ 434
                    I  T+ ++        IVG+  +G  L S        TH            
Sbjct: 404 QSIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQDMSPEYASILL 463

Query: 435 --------------------------SWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFST 468
                                     SWS+SLFAPSIFFY+TGTI+WLAFASSKPQ+FS 
Sbjct: 464 GITNTVGAIPGIVGVALTGYLLDSTHSWSISLFAPSIFFYVTGTIIWLAFASSKPQSFSE 523

Query: 469 RD 470
           ++
Sbjct: 524 QN 525

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144091|ref|XP_002325183.1| predicted protein [Populus trichocarpa] gi|222866617|gb|EEF03748.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 316/542 (58%), Positives = 354/542 (65%), Gaps = 79/542 (14%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA LTL A+ F   +HNT++   VF    S K    +   S    + RV C +KEKENVK
Sbjct: 1   MANLTLKAKSFCSLSHNTNTQTSVFKTTTSFKNNSLNFLHSGNSLKFRVWCGVKEKENVK 60

Query: 61  EETDKFDEVLTGLR-VDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           E  ++  +VL GL+  DE     GS   F+   G   G+ EVG    WPPWKNIP RYKL
Sbjct: 61  EG-ERVPDVLAGLKKADELDPKRGSSLDFEQRLGDDSGSSEVGFDWKWPPWKNIPLRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVLQ GVL WS+ATALLP LAG+MPG VLSRVLVGIGEGVSPSAATDLIAR     
Sbjct: 180 FGGRKVLQIGVLTWSVATALLPFLAGYMPGFVLSRVLVGIGEGVSPSAATDLIAR----- 234

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
            RSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+EG+ S
Sbjct: 235 HRSRAVAFVFGGLSVGSVTGLLLAPPLIQNFGWASVFYIFGFLGVAWFLGFQYLEEGQAS 294

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
             A    RS  I  +KS S +L E+G SLKDVPWKA F++ AVWAMIYAHFCGSWGHYTC
Sbjct: 295 FAAKPTSRSQTIYSEKSSSNALAELGGSLKDVPWKAFFQTPAVWAMIYAHFCGSWGHYTC 354

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------- 407
           LSWLP+YFSEELSLNLTEAAWVSILPPLASV VTSIAAQ AD LI+ GVE T        
Sbjct: 355 LSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSIAAQLADKLISNGVEITTVRKICQT 414

Query: 408 ---------MGITNTVGAVP--GIVGVALTGYLLDS---------THSWSMSLFAPSIFF 447
                    M +++    +P   IVG+   G  L S         TH   MS    SI  
Sbjct: 415 IAFLSPALCMTLSSVDLGLPPWEIVGILTAGLALSSFALSGRLYCTHQ-DMSPEYASILL 473

Query: 448 YLTGTI---------------------------------------VWLAFASSKPQNFST 468
            +T T+                                       VWLAFASSKP NFS 
Sbjct: 474 GITNTVGAIPGIVGIPLTGYLLDTTHSWSIALFVPSIFFYLTGTIVWLAFASSKPTNFSN 533

Query: 469 RD 470
            D
Sbjct: 534 TD 535

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484723|ref|XP_002263200.2| PREDICTED: probable anion transporter 6, chloroplastic-like [Vitis vinifera]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/407 (69%), Positives = 327/407 (80%), Gaps = 9/407 (2%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MAK     E    F  +T+S         S K ++  ++ S+  S+LRV  +I+ KE+V 
Sbjct: 1   MAKFAFTTENICCFPRHTNS----LFNNTSLKHRQLLIFSSKQRSQLRVFSAIRGKESVT 56

Query: 61  EETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTS 120
           E     + V+TGLRVDE  + S   S++       EVG    WPPWKN+PQRYKLIGTTS
Sbjct: 57  ET----ESVITGLRVDELDN-SASASDAEGQEEGGEVGFDWNWPPWKNLPQRYKLIGTTS 111

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           LAFV+CNMDKVNLSVAIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGRK
Sbjct: 112 LAFVVCNMDKVNLSVAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 171

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL+ GVL WSLATAL+P+LAGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIPLEERSRA
Sbjct: 172 VLEIGVLTWSLATALVPVLAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPLEERSRA 231

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           V+FVFGGLS GSV GLLLAPP+I+N GWE+VFYIFG+LGIAWF GF+ ++E + S  A L
Sbjct: 232 VAFVFGGLSVGSVTGLLLAPPLIQNFGWEAVFYIFGILGIAWFLGFQFVKEEQPSFVADL 291

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
            P S  I+ KKSL+ SL+++  SLKDVPWKA F+++AVWAMIY HFCGSWGHYTCLSWLP
Sbjct: 292 IPWSRTISSKKSLNTSLKDLDASLKDVPWKAFFQTRAVWAMIYTHFCGSWGHYTCLSWLP 351

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
           TYFSEEL+LNLTEAAWVS+LPPLAS+ VT+IA+Q ADNLIA GVETT
Sbjct: 352 TYFSEELNLNLTEAAWVSVLPPLASIFVTTIASQLADNLIANGVETT 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812223|ref|XP_002873995.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata] gi|297319832|gb|EFH50254.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 301/543 (55%), Positives = 351/543 (64%), Gaps = 100/543 (18%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKF----HLYPSEGCSRL---RVSCSI 53
           MA+LTL     F            F+    + +Q F     ++P    + L   RV CS 
Sbjct: 1   MARLTLRPHNHF------------FSSPIHAHKQPFLSVYTIFPHHHHNPLIKSRVKCSA 48

Query: 54  KEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
              E V+E      ++     +++P  +        +V  TE  G    WPPWKNIPQRY
Sbjct: 49  SGTERVRES----KKLPPKDPIEDPKPLLPIP----EVLSTE-TGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYI-NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I N  KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISNSHKSENATKEELGSSLKEIPWKSFFQSSAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM--GI 410
           YTCLSWLPTYFSE L+LNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GVETT    I
Sbjct: 334 YTCLSWLPTYFSEALNLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVETTTVRKI 393

Query: 411 TNTVGAV-PGIV---------------------GVALTGYLLD---STH----------- 434
             T+  V P I                      G+AL+ + L     TH           
Sbjct: 394 CQTIAFVSPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

Query: 435 ---------------------------SWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFS 467
                                      SW+MSLF PSIFFYLTGT+VWLAFASS+PQ F+
Sbjct: 454 LGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSEPQTFT 513

Query: 468 TRD 470
             D
Sbjct: 514 KED 516

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567984|ref|NP_197538.2| putative anion transporter 6 [Arabidopsis thaliana] gi|122214318|sp|Q3E9A0.1|ANTR6_ARATH RecName: Full=Probable anion transporter 6, chloroplastic; AltName: Full=Phosphate transporter PHT4;5; Flags: Precursor gi|332005454|gb|AED92837.1| putative anion transporter 6 [Arabidopsis thaliana]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 301/547 (55%), Positives = 346/547 (63%), Gaps = 108/547 (19%)

Query: 1   MAKLTLGAEKFF----VFAHNTS--SGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIK 54
           MA+LTL     F    ++AH     S   +F   + +   K            RV CS  
Sbjct: 1   MARLTLRPHNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIK-----------SRVKCSAS 49

Query: 55  EKENVKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNI 109
             E V+E       D  ++    L + E  S               E G    WPPWKNI
Sbjct: 50  GTERVRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNI 95

Query: 110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPG 169
           PQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPG
Sbjct: 96  PQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPG 155

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
           GWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIA
Sbjct: 156 GWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIA 215

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L
Sbjct: 216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query: 290 QEGETSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348
            E E S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCG
Sbjct: 276 NEEEVSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCG 329

Query: 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408
           SWGHYTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT 
Sbjct: 330 SWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTT 389

Query: 409 --GITNTVGAV-PGIV---------------------GVALTGYLLD---STH------- 434
              I  T+  V P I                      G+AL+ + L     TH       
Sbjct: 390 VRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEY 449

Query: 435 -------------------------------SWSMSLFAPSIFFYLTGTIVWLAFASSKP 463
                                          SW+MSLF PSIFFYLTGT+VWLAFASS+P
Sbjct: 450 ASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSEP 509

Query: 464 QNFSTRD 470
           Q F   D
Sbjct: 510 QTFRKED 516

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562936|ref|XP_003549724.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 301/539 (55%), Positives = 353/539 (65%), Gaps = 90/539 (16%)

Query: 1   MAKLTLGAEKFFVFAH-NTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCS----IKE 55
           MA+LTL  +    F+H   +     F +  S +R  FHL PS    RLR+  S     KE
Sbjct: 1   MARLTLRPDNSCFFSHIQRAYSHTPFTRTTSFQRFHFHLSPSNHTLRLRIVSSSQQNAKE 60

Query: 56  KENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
            + V     K  +VLT L+V+E                 +    +  WPPWKN+PQRYKL
Sbjct: 61  TQRVSMAKAK-AKVLTDLQVEE--------------MEKQHETLSWNWPPWKNLPQRYKL 105

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLS+AIIPMSH+FGWNS+ AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 106 IGTTSLAFVICNMDKVNLSIAIIPMSHQFGWNSTTAGLVQSSFFWGYALSQLPGGWLAKI 165

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGG  VL+ GVLIWS+ATA +P ++G+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPLE
Sbjct: 166 FGGGTVLEVGVLIWSVATAFVPFISGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPLE 225

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET 
Sbjct: 226 ERSRAVAFVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGETQ 285

Query: 296 -NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT 354
            N  +L+  S+   M +S   SL E+  SLK+VPWKA F+++AVWAMIYAHFCGSWGHY 
Sbjct: 286 LNAESLS--SDQDTMTQSWKTSLRELNGSLKEVPWKAFFQNRAVWAMIYAHFCGSWGHYN 343

Query: 355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM------ 408
           CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VT +AAQ ADNLI+ GVE T+      
Sbjct: 344 CLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTGLAAQLADNLISRGVEATVVRKICQ 403

Query: 409 -------GITNTVGAVP------GIVGVALTGYLLDS--------THSWSMSLFAPSIFF 447
                   I  T+ ++        IVG+  +G  L S        TH   MS    SI  
Sbjct: 404 SIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQ-DMSPEYASILL 462

Query: 448 YLTGT---------------------------------------IVWLAFASSKPQNFS 467
            +T T                                       IVWLAFASSKPQ+FS
Sbjct: 463 GITNTVGAVPGIVGVALTGYLLDSTHSWSISLFAPSIFFYVTGTIVWLAFASSKPQSFS 521

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443273|ref|XP_004139404.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Cucumis sativus]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/398 (67%), Positives = 308/398 (77%), Gaps = 25/398 (6%)

Query: 47  LRVSCSIKEKENVKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYW 103
           LRV CSIKEKENVK   D    VL+GLRVD     GSVS  +++     G +EVG    W
Sbjct: 41  LRVCCSIKEKENVKGNED-ISPVLSGLRVDASERSGSVSKSENDLSSGHGIDEVGSNLNW 99

Query: 104 PPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYA 163
           PPW+N+P RYKLIGTT+LAFVICNMDKVNLSVAIIPMSH+FGWNSSVAGLVQSSFFWGYA
Sbjct: 100 PPWRNVPDRYKLIGTTALAFVICNMDKVNLSVAIIPMSHQFGWNSSVAGLVQSSFFWGYA 159

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
           +SQLPGGWLAKIFGGRKVL+ GVL WSLATAL+P LAG+MPGL+ SRVLVGIGEGVSPSA
Sbjct: 160 MSQLPGGWLAKIFGGRKVLEIGVLTWSLATALVPFLAGYMPGLIFSRVLVGIGEGVSPSA 219

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283
           ATDLIARSIPL+ERSRAV+FVFGGLS GSV+GLLL+P +I+N GWESVFYIFG LGIAWF
Sbjct: 220 ATDLIARSIPLQERSRAVAFVFGGLSVGSVSGLLLSPSLIQNFGWESVFYIFGFLGIAWF 279

Query: 284 SGFKILQ-------------EGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           +GF+ L              E E+ + + L  + +    K      L+++  +LK+VPW+
Sbjct: 280 AGFQFLDGQSSGPLKSISVVESESDSDSVLPKKKSTTPFK------LQQLPAALKEVPWR 333

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS 390
           A      VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL+LNLTEAAWVSILPPLAS+ VTS
Sbjct: 334 AFLEYPPVWAMIYAHFCGSWGHYTCLSWLPTYFSEELNLNLTEAAWVSILPPLASIFVTS 393

Query: 391 IAAQFADNLIATGVETT--MGITNTVGAVPGIVGVALT 426
           IA+Q ADNLI+ GV+TT    I  TV  V   V + L+
Sbjct: 394 IASQLADNLISNGVDTTKVRKICQTVAFVSPAVCMTLS 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478369|ref|XP_003609470.1| hypothetical protein MTR_4g116030 [Medicago truncatula] gi|355510525|gb|AES91667.1| hypothetical protein MTR_4g116030 [Medicago truncatula]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/394 (66%), Positives = 301/394 (76%), Gaps = 29/394 (7%)

Query: 28  RNSSKRQKFHLYPSEGCSRLR----VSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSG 83
           + + +R  FH  PS+   R +    VSCS   ++++KE  +K  +       D    V  
Sbjct: 35  KTTFQRFHFHFTPSKLIHRTKQRTVVSCS-NTQQDIKETHNKLSKTKINALSDLDDDVEL 93

Query: 84  FDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR 143
               SG             WP WKN+P RYKLIGTTSLAFVICNMDKVNLS+AIIPMSH+
Sbjct: 94  EQHLSGN------------WPSWKNLPLRYKLIGTTSLAFVICNMDKVNLSIAIIPMSHQ 141

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGR VL  GVLIWS+ATAL+P LAG+M
Sbjct: 142 FGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRNVLVVGVLIWSVATALVPFLAGYM 201

Query: 204 PGLVLSRVLVGIGEGVSPSAATDLIAR---------SIPLEERSRAVSFVFGGLSFGSVA 254
           PGL+L+R+LVGIGEGVSPSAATDLIAR         SIPLEERSRAV+FVFGGLS GSV 
Sbjct: 202 PGLILTRILVGIGEGVSPSAATDLIARHVNIQIHFWSIPLEERSRAVAFVFGGLSVGSVL 261

Query: 255 GLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYINMKKSL 313
           GLL APP+I+++GWESVFYIFGLLGIAWF GF+ L+EGET   A + +P     NM +S 
Sbjct: 262 GLLFAPPLIQSIGWESVFYIFGLLGIAWFIGFQFLEEGETRLAAESFSPAQG--NMTQSW 319

Query: 314 SASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE 373
             SL+EM  SLKDVPWKA F+S+AVWAMIYAHFCGSWGHYTCLSWLPTYFS+EL LNLTE
Sbjct: 320 QTSLKEMNSSLKDVPWKAFFQSRAVWAMIYAHFCGSWGHYTCLSWLPTYFSQELDLNLTE 379

Query: 374 AAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
           AAWVSILPPLAS+ VTSIA+Q AD+LI+ GVETT
Sbjct: 380 AAWVSILPPLASIFVTSIASQLADSLISKGVETT 413

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.678	0.617	0.744	4.2e-158
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.710	0.652	0.371	3.4e-76
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.819	0.711	0.347	1.1e-72
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.653	0.599	0.354	1.8e-54
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.589	0.559	0.348	4.4e-49
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.589	0.559	0.334	3.8e-48
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.589	0.559	0.341	3.8e-48
TAIR|locus:2158710	432	PHT4;6 "AT5G44370" [Arabidopsi	0.634	0.689	0.356	1.6e-47
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.589	0.557	0.346	1.6e-47
RGD|1311388	495	Slc17a5 "solute carrier family	0.589	0.559	0.330	4.2e-47

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1276 (454.2 bits), Expect = 4.2e-158, Sum P(2) = 4.2e-158
 Identities = 245/329 (74%), Positives = 274/329 (83%)

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
             E G    WPPWKNIPQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQ
Sbjct:    82 ETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQ 141

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI 215
             SSFFWGYALSQLPGGWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGI
Sbjct:   142 SSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGI 201

Query:   216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF 275
             GEGVSPSAATDLIAR+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+F
Sbjct:   202 GEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLF 261

Query:   276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK-KSLSASLEEMGESLKDVPWKAIFR 334
             GLLG+ WF GF+ L E E S       + N I+   KS +A+ EE+G SLK++PWK+ F+
Sbjct:   262 GLLGVGWFVGFQFLNEEEVSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQ 315

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
             S AVWAMIY HFCGSWGHYTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+Q
Sbjct:   316 SPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375

Query:   395 FADNLIATGVETTM--GITNTVGAV-PGI 420
             FAD LI  GV+TT    I  T+  V P I
Sbjct:   376 FADYLITNGVDTTTVRKICQTIAFVAPAI 404

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 3.4e-76, Sum P(3) = 3.4e-76
 Identities = 129/347 (37%), Positives = 199/347 (57%)

Query:    76 DEPGSVSGFDSESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKV 131
             D+  S + +  E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+V
Sbjct:    62 DKSESSNSYYVEGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRV 121

Query:   132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
             N+S+AI+PMS  +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+
Sbjct:   122 NMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSI 181

Query:   192 ATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF 250
             AT L P+ A   +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  
Sbjct:   182 ATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYL 241

Query:   251 GSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK 310
             GSV GL  +P +I   GW SVFY FG LG  W + +    E       TL P       +
Sbjct:   242 GSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------E 295

Query:   311 KSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLN 370
             + L A      E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  N
Sbjct:   296 RKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFN 355

Query:   371 LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT--MGITNTVG 415
             L E+  +S+ P +   +  +     AD L++ G   T    I  T+G
Sbjct:   356 LMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIG 402

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 139/400 (34%), Positives = 220/400 (55%)

Query:    37 HLYPSEGCS-RLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTE 95
             H+  S GC  + R+   I+ + ++K    +         + E G V   D  +  +    
Sbjct:    58 HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITE-GVVPSADGSAEAILVEG 116

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
              +  AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  + W+S+  GL+Q
Sbjct:   117 NLQNASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQ 174

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVG 214
             SSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A   +P L++ R  +G
Sbjct:   175 SSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMG 234

Query:   215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI 274
             IGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY 
Sbjct:   235 IGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYS 294

Query:   275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
             FG LG  WF  +         +   L+        K  L  S     E +  +PWK I  
Sbjct:   295 FGSLGSIWFLLWLKFAYSSPKDDPDLSEEEK----KVILGGSKPR--EPVTVIPWKLILS 348

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
                VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I   
Sbjct:   349 KPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGW 408

Query:   395 FADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTH 434
              AD L++ G+  T  +   + ++ G +G A   +L   +H
Sbjct:   409 IADTLVSRGLSIT-NVRKIMQSI-GFLGPAF--FLSQLSH 444

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 113/319 (35%), Positives = 176/319 (55%)

Query:   109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
             +P+R K++  T+    +CN D+V +SVA++P++ + GW+SS  G+VQSSF WGY  S + 
Sbjct:    95 MPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVI 154

Query:   169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP-GLVLSRVLVGIGEGVSPSAATDL 227
             GG L   +GG++VL  GV +WSLAT L P  A      L+  R   G+ EGV+  + T L
Sbjct:   155 GGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTL 214

Query:   228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
             ++R  P++ER+ AV     G   G+V GLLL P ++ ++G    F +F  LG+ W S + 
Sbjct:   215 LSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWS 274

Query:   288 ILQEGETSN--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA-VWAMIYA 344
                 G T+N   +    RS  + + ++    ++    S K  P   +  SK   WA+I+A
Sbjct:   275 ---SGVTNNPQDSPFITRSE-LRLIQA-GKPVQPSTISPKPNPSLRLLLSKLPTWAIIFA 329

Query:   345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG- 403
             +   +WG++  LSW+P YF    ++NL +AAW S LP     +    A   +D LI TG 
Sbjct:   330 NVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGH 389

Query:   404 -VETTMGITNTVGAV-PGI 420
              V +   I  ++G + PG+
Sbjct:   390 SVTSVRKIMQSIGFMGPGL 408

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 418 (152.2 bits), Expect = 4.4e-49, Sum P(3) = 4.4e-49
 Identities = 99/284 (34%), Positives = 151/284 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  GVL  ++ T   PL A F
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G LV  R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FGL+GI WF  +  L         T+ P       K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S +P
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVP 334

Query:   382 PLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVAL 425
              L   L   ++ Q ADNL A    +T+ +      + G++G A+
Sbjct:   335 YLGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLI-GMIGPAI 377

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 406 (148.0 bits), Expect = 3.8e-48, Sum P(3) = 3.8e-48
 Identities = 95/284 (33%), Positives = 152/284 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             R+ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A F
Sbjct:   100 RYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FG++GI WF  +  L         T++ +      K+ + +SL+   
Sbjct:   220 ICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E   +S LP
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALP 334

Query:   382 PLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVAL 425
                  L   ++ Q ADNL A    +T+ +      + G++G A+
Sbjct:   335 YFGCWLCMILSGQAADNLRAKWNFSTICVRRVFSLI-GMIGPAV 377

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 405 (147.6 bits), Expect = 3.8e-48, Sum P(3) = 3.8e-48
 Identities = 97/284 (34%), Positives = 152/284 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADL 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FG +GI WF    +L     S+      R ++   K+ + +SL    
Sbjct:   220 ICYYMNWTYVFYFFGTIGIFWF----LLWIWLVSDTPQKHKRISHYE-KEYILSSLRNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLP 334

Query:   382 PLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVAL 425
              L S L   ++ Q ADNL A    +T+ +      + G++G A+
Sbjct:   335 YLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFSLI-GMIGPAV 377

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

TAIR|locus:2158710 PHT4;6 "AT5G44370" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 113/317 (35%), Positives = 164/317 (51%)

Query:   108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQL 167
             NIPQRY ++  T L+  +C +++V  S+A    +   G N S  G + S+FF GYA SQ+
Sbjct:     5 NIPQRYVIVFLTFLSTCVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACSQV 64

Query:   168 PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG-VSPSAATD 226
             PGGW A+  GGRKVL    ++WS    L+PL    +  LV++R+LVG+ +G + PS  T 
Sbjct:    65 PGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVGLLVVARLLVGVAQGFIFPSIHT- 123

Query:   227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF 286
             ++A+ +P  ERSR VS    G+  G+  G+ L P ++E  G ESVF    L G+ W    
Sbjct:   124 VLAQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGVIW---- 179

Query:   287 KILQEGETSNGATLAPRSNYINMKKS-LSASLEEMG---ESLKDVPWKAIFRSKAVWAMI 342
              +L        AT  PRS +     +    +L         +  +PWK I  S  VWA++
Sbjct:   180 SLLW----IRYATDPPRSEHPKAAAAGFGGALLPTNVNHHKVTHIPWKKIMLSLPVWAIV 235

Query:   343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF-ADNLIA 401
               +F   +  Y  ++WLPTYF   L ++L +    S + P  ++ V SI   F AD LI 
Sbjct:   236 VNNFTFHYALYVLMNWLPTYFELGLQISL-QGMDSSKMVPYLNMFVFSIVGGFIADYLIT 294

Query:   402 T---GVETTMGITNTVG 415
                  V  T    NTVG
Sbjct:   295 KRILSVTRTRKFLNTVG 311

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 410 (149.4 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
 Identities = 99/286 (34%), Positives = 152/286 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ WN+   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  S+ T L PL A F
Sbjct:   100 KYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLA 259
               G L+  R L G+GEGV+  A   + +   P  ERS+  ++S+   G   G+V  L L+
Sbjct:   160 GVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLS 219

Query:   260 PPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE 319
               I   L W  VFY+FGL+GI WF  +  L         T++P       K+ + +SL  
Sbjct:   220 GIICFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYE-----KEYILSSLRN 274

Query:   320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI 379
                S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S 
Sbjct:   275 QLSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSA 334

Query:   380 LPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVAL 425
             +P     +   ++ Q ADNL A    +T+ +      + G+ G A+
Sbjct:   335 VPYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLI-GMFGPAV 379

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 4.2e-47, Sum P(3) = 4.2e-47
 Identities = 94/284 (33%), Positives = 151/284 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   PL A  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADL 159

Query:   203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
              +  L++ R L G+GEGV+  A   + +   P  ERS+ ++  + G   G+V  L L+  
Sbjct:   160 GVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FGL+GI WF  +  +         T+   S+Y   K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTI---SHY--EKEYIVSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW +I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKVVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALP 334

Query:   382 PLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVAL 425
                  L   +  Q AD L      +T+ +      + G+VG A+
Sbjct:   335 YFGCWLCMIVCGQAADYLRVKWNFSTISVRRIFSLI-GMVGPAV 377

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E9A0	ANTR6_ARATH	No assigned EC number	0.5502	0.9340	0.8491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_602135.1 annotation not avaliable (517 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-38
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-36
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-30
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-29
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	1e-16
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-16
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-14
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-12
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	5e-11
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	2e-10
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	5e-10
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	1e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-06
PRK03699	394	PRK03699, PRK03699, putative transporter; Provisio	2e-06
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	6e-06
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	7e-06
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	7e-06
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	8e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	8e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	9e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-05
COG0477	338	COG0477, ProP, Permeases of the major facilitator	8e-05
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	8e-05
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	9e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	1e-04
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-04
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	4e-04
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	0.001
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.001
PRK03633	381	PRK03633, PRK03633, putative MFS family transporte	0.002
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	0.002
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  144 bits (366), Expect = 2e-38
 Identities = 91/325 (28%), Positives = 152/325 (46%), Gaps = 27/325 (8%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           F W+ ++ GL+ SS F+G  + Q+P G+LA  +  +  +  G+ + S+ + ++P  AG  
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 204 PGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262
             LV+  RV+ G+ +G    A   +I +  P +ERSR +     G   G+   L ++  +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 263 IE-NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASL-EEM 320
            E   GW  +FY+FG++G AW   + +    + S    ++        KK +++SL  + 
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-----KFEKKYINSSLQGQK 245

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL 380
           G + + +P KAI +S  VWA+ +A F   W +    ++LPT+ S  L ++  E   +S L
Sbjct: 246 GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL 305

Query: 381 PPLASVLVTSIAAQFADNLIATG----VETTMGITNTVGAVPGIVGVALTGYLLDSTHSW 436
           P L + L +  A   AD L ++                G  PGI   A     L +    
Sbjct: 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYA--LPYLSAA--- 360

Query: 437 SMSLFAPSIFFYLTGTIVWLAFASS 461
                     FYLT  I+ LA A S
Sbjct: 361 ----------FYLTIIILTLANAVS 375

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  137 bits (347), Expect = 4e-36
 Identities = 90/337 (26%), Positives = 144/337 (42%), Gaps = 6/337 (1%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           L  VI  +D+ NLS A   +    G +++  G V S+F WGY + Q PGGWL   FG RK
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
            L   ++IW + T L      +   L + RVL+G  E         ++A   P  ER+ A
Sbjct: 61  TLAVFIVIWGVFTGLQAFAGAY-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGAT 299
           VS        G + G  L   I+ +  W+  F I G+LGI W     K + +        
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-W 178

Query: 300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
           L     YI +   L+    +   + K    K + + + VW +    F  + G    L+W 
Sbjct: 179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPG 419
           PTY  +E  L++ EA +++ LP +   +   +  + +D L+  G   ++        + G
Sbjct: 239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGK--SLVFARKTAIIAG 296

Query: 420 IVGVALTGYLLDSTHSW-SMSLFAPSIFFYLTGTIVW 455
           +V   L          + +++L A   F    G I W
Sbjct: 297 LVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGW 333

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  120 bits (302), Expect = 2e-30
 Identities = 76/349 (21%), Positives = 130/349 (37%), Gaps = 23/349 (6%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
            AF+      +      + ++   G + +  GL+ ++F  GYAL+Q   G L+  FG R+
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL  G+L+++L   LL   +     L++ RVL G+G G    AA  LIA   P EER RA
Sbjct: 64  VLLIGLLLFALGLLLLLFASSL-WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           +  +  G   G+  G LL   +    GW + F I  +L +       +L           
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL----------- 171

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
                                     VP   +     V  ++ A     +  +  L++LP
Sbjct: 172 -----LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLP 226

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGI 420
            Y  E L L+   A  +  L  L   +   +  + +D L          +   +  +   
Sbjct: 227 LY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGR----RRRLLLALLLLILAA 281

Query: 421 VGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTR 469
           +G+AL   L +S+    ++L        L    +    +   P+     
Sbjct: 282 LGLALLS-LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGT 329

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  118 bits (298), Expect = 1e-29
 Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 46/282 (16%)

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           +    L F +  +D+  LS A+  ++   G ++S AGL+ S+F  GYAL  L  G+L+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FG R+VL  G+L+++L + LL   +     L++ R L+G+G G    AA  LIA   P +
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSL-WLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ER RA+     G   G++ G LL   + E+LGW  +F I  +LG+               
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA------------ 167

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                                          +    + R   +  +  A F  S+G+Y  
Sbjct: 168 -------------------------------LLLLFLLR--LLLLLALAFFLLSFGYYGL 194

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397
           L++LP Y  E L L+  EA  +  L  L  +L   +    +D
Sbjct: 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 70/359 (19%), Positives = 130/359 (36%), Gaps = 32/359 (8%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           + +    + + N ++A+  +    G + +  GL+ SSF   Y +S+   G ++     R 
Sbjct: 2   IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV 61

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGL---VLSRVLVGIGEGVSPSAATDLIARSIPLEER 237
            L  G+++ ++      L  GF   L        L GI +G+        + +     ER
Sbjct: 62  FLPIGLILCAIVN----LFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSER 117

Query: 238 SRAVSFVFGGLSFGSVAGLLLAPPII-----ENLGWESVFYIFGLLGIAW-FSGFKILQE 291
              VSF     +     G  L PP++     E   W  VF + G++ I      F +L++
Sbjct: 118 GTWVSF----WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD 173

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
              S G  L P     N +    A  +E   + K +  + +  +K +W +   +      
Sbjct: 174 SPQSCG--LPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV 231

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-----ATGVET 406
               L W P Y ++E   +  +A+W   L  L  ++ T +A   +D L         V  
Sbjct: 232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF 291

Query: 407 TMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQN 465
              I  ++              L        + LFA     Y    ++ +  +   P+ 
Sbjct: 292 MALIIVSLLVYWLNPAANPLMDL--------ICLFALGFLVYGPQMLIGVIASELAPKK 342

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 77/322 (23%), Positives = 120/322 (37%), Gaps = 27/322 (8%)

Query: 107 KNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYA 163
           K    RY+      L+F+I  MD  +L+            +G +    G + S+   G A
Sbjct: 8   KQPLSRYQWR-AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMA 66

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
              L  G LA   G R+VL   +L++S+ T L   LA  +  L++ R L G+G G     
Sbjct: 67  FGALFFGPLADRIGRRRVLLWSILLFSVFTLLC-ALATNVTQLLILRFLAGLGLGGLMPN 125

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI--A 281
              L++   P   R  AV  +F G   G+  G  LA  +I   GW S+FY+ G+  +   
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185

Query: 282 WFSGF------KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF-- 333
                        L         T+    N I  +    A      +       +++F  
Sbjct: 186 LLLMRFLPESIDFLVS---KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA 242

Query: 334 -----RSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
                 ++    +   +F    G Y   +WLP     EL  +L+ AA    L     V+ 
Sbjct: 243 LFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIG 301

Query: 389 TSIAAQFADNLIATGVETTMGI 410
           + I    AD L   G   T  +
Sbjct: 302 SIIFGWLADRL---GPRVTALL 320

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 158 FFWGYALSQL----PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV 213
              GYAL QL      G L   FG + VL  G+ I+ L+TA+   L+  +  L+++R L 
Sbjct: 3   LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALSSNITVLIIARFLQ 61

Query: 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273
           G G   +  A   LIA   P EER  A+  +  G++ G + G  L   + + LGW + F 
Sbjct: 62  GFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL 121

Query: 274 IFGLLGIAWF-SGFKILQE 291
              +L +A F     +L E
Sbjct: 122 FLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 64/323 (19%), Positives = 117/323 (36%), Gaps = 38/323 (11%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P++   G +   AG + +++  G AL       L      R++L   + ++ ++  L  L
Sbjct: 38  PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
              F   L+L+R L G+  GV  S A  L AR +P  +R RA++ VF GL+  +V G+ L
Sbjct: 98  APSFAV-LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156

Query: 259 APPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLE 318
              + +  GW + F    +L +                   L P         SL   L 
Sbjct: 157 GTFLGQLFGWRATFLAIAVLALLAL----------LLLWKLLPPSEI----SGSLPGPLR 202

Query: 319 EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS 378
            +           + R   V   + A F    GH+   +++  +       +++  + V 
Sbjct: 203 TLL---------RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL 253

Query: 379 ILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSW-- 436
           +   +A  +   +  + AD           G    + A   ++ +AL             
Sbjct: 254 LAFGIAGFIGNLLGGRLADR----------GPRRALIAALLLLALALLALTFTGASPALA 303

Query: 437 --SMSLFAPSIFFYLTGTIVWLA 457
              + L+  +    L G    LA
Sbjct: 304 LALLFLWGFAFSPALQGLQTRLA 326

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 42/144 (29%), Positives = 65/144 (45%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           +    G +++ AGL+ S F  G  L  L GG L+   G R++L    L+ +    LL  L
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
           A  +  L+++ +L+G G G +  A   L +   P E R  A        S G   G LLA
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 260 PPIIENLGWESVFYIFGLLGIAWF 283
             +++  G+  VF I   L +   
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAA 345

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 24/173 (13%)

Query: 118 TTSLAFVICNMDKVNLS---VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           T  L F++  ++ ++L    VA   M+  FG + +  G   S+   G     L GG LA 
Sbjct: 16  TIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD 75

Query: 175 IFGGRKVLQTGVL---IWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA-- 229
             G +++L   V    ++SLATA     A   P L+++R+L G+G G    A  +LIA  
Sbjct: 76  RIGRKRILIVSVALFGLFSLATAQ----AWDFPSLLVARLLTGVGLG---GALPNLIALT 128

Query: 230 -RSIPLEERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYIFGL 277
             ++    R  AVS ++ G+ FG    SV G+L A     +  W  +FY+ G+
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA----GDAAWRHIFYVGGV 177

Length = 406

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 33/335 (9%)

Query: 132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
           N ++A+  +    G + +  G++ S+F   Y +S+   G L+     R  +  G+++   
Sbjct: 47  NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL--- 103

Query: 192 ATALLPLLAGFMPGLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFV-- 244
            +A++ +L GF P L L  VL  +     G G  P A T  I      +ER    S    
Sbjct: 104 -SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART--ITHWFSRKERGTWWSIWNT 160

Query: 245 ---FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGATL 300
               GG     VA L        + GW + FY  G++ I        +L++   S G  L
Sbjct: 161 SHNIGGALAPLVALLAF---FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG--L 215

Query: 301 APRSNYIN-MKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
            P   Y     +      E  G +   +  K + ++K +W +  A+       Y    W 
Sbjct: 216 PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPG 419
           P Y SE    +L +A W   L  +A +  T +A   +D  +  G    M +   +     
Sbjct: 276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD-KLFKGRRGPMALIFMLLIT-- 332

Query: 420 IVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIV 454
               +L  Y L    S+ +      I  ++ G ++
Sbjct: 333 ---ASLVLYWLAPNGSYLLDA----ILLFIIGFLI 360

Length = 448

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L     L   +  +D   ++VAI  ++   G + S    V +S+    A+S    GWLAK
Sbjct: 3   LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK 62

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARS 231
            FG R++       ++L +    LL G  P    +++ RV+ G G G     +   +   
Sbjct: 63  RFGTRRLFLISTFAFTLGS----LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNI 118

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF-SGFKILQ 290
            P E+R RA++     +      G  L   IIEN  W  +F I   +GI      F IL 
Sbjct: 119 YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178

Query: 291 E 291
            
Sbjct: 179 R 179

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 38/210 (18%)

Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           A +VQ   + +  G+A  QL  G L+  +G R VL  G+ I++L+ +L   L+  +  L+
Sbjct: 39  ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS-SLGLALSNNIETLL 97

Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266
           + R +   G   + S  +  + R I P EE SR  S +   L+       LL   I+  L
Sbjct: 98  VLRFVQAFG-ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL 156

Query: 267 GWESVFYIFGLLGIA-----WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
            W ++F    L GI      +F                + P +     +  +S   E   
Sbjct: 157 SWHAIFAFLSLAGILLSALIFF----------------ILPETLPYEARIQISTYFETFL 200

Query: 322 ESLKDVPWKAIFRSKAVW--AMIYAHFCGS 349
                     + +SK  W  A+IY    G 
Sbjct: 201 ---------LLLKSKMFWGYALIYGASFGG 221

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
           L   +       G ++ +AGL+        A+ +L  G L+   G R+ L   +L+  LA
Sbjct: 221 LLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA 280

Query: 193 TALLPLLAGF--MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF 250
              L LL+       L+++ +L+G G G+   A   L++   P EER  A        S 
Sbjct: 281 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340

Query: 251 GSVAG 255
           G   G
Sbjct: 341 GGALG 345

Length = 346

>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 52/221 (23%)

Query: 169 GGWLAKIFGGRKVLQTG---VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAAT 225
             WL +I   ++ L  G   +++          LA F     ++  ++G+  G++ S  T
Sbjct: 62  NAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFS----IAMFVLGVVSGITMSIGT 117

Query: 226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ENLGWESVFYIFGLLG 279
            LI      E + R    +F   SF S+AG++   PII       ++ W  V+   GL+ 
Sbjct: 118 FLITHV--YEGKQRGSRLLFTD-SFFSMAGMIF--PIIAAYLLARSIEWYWVYACIGLVY 172

Query: 280 -----IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
                +  FS F  L +                        + E+ G             
Sbjct: 173 VAIFILTLFSEFPALGKHAPKADK---------------PVAKEKWGIG----------- 206

Query: 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
              V  +  A         T +SW+P Y  ++  ++L +A 
Sbjct: 207 ---VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG 244

Length = 394

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 19/235 (8%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLV 207
           A L+Q +FF GY +  LP G L K  G +  +  G+L++++  AL         +   LV
Sbjct: 50  ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109

Query: 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-----FGGLSFGSVAGLLLAPPI 262
              +L   G G+  +AA   +      E  +  ++        G +    +   L+   +
Sbjct: 110 ALFIL-ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV 168

Query: 263 IENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK--SLSASLEEM 320
              +    +  I G    +    + IL          L   +  I + K   L  +   +
Sbjct: 169 ALTMSAAQILAIKGADASSVQFPYLIL-------AGLLVLLAVLILLSKLPDLQVAAPSL 221

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
           G S       ++F++K +   + A F          S+L +Y  E L LN  +AA
Sbjct: 222 GASGSAGL-SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA 275

Length = 422

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           +LI    + F+   +D++N+  A + M    G ++++ GL  + F+  Y +  +P   + 
Sbjct: 8   RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML 67

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            I G R+ +   +++W +A+    + A     L L R+LVGI E          +    P
Sbjct: 68  AIIGARRWIAGIMVLWGIAST-ATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-----NL-GWESVFYIFG----LLGI-AW 282
              R+RA +     +      GL+L+  I+       L GW+ +F + G    +LG+  W
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186

Query: 283 F 283
           F
Sbjct: 187 F 187

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 56/300 (18%), Positives = 93/300 (31%), Gaps = 33/300 (11%)

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPS 222
           A+ ++  G+L   FG R      +L+ ++      L       L+L R+ +GI  G S +
Sbjct: 51  AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFA 109

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------GWES 270
           +    I+   P + +  A+    G  + G      + PPII +L            GW  
Sbjct: 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169

Query: 271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           V       GI       I        GA   P            A       +L D    
Sbjct: 170 V---IVPAGILLLPALLIF-----FVGADTPPGKPATGKLSFKGARWSVGTGALGDQ--L 219

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA-AWVSILPPLASVLVT 389
            +FR +  W +   +           S    +F ++  L+   A A+ S+   L   L  
Sbjct: 220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLG-GLLGSLAR 278

Query: 390 SIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL 449
            +    +D L        M   + +G   G   V L      S            +  + 
Sbjct: 279 PLGGAISDRLGGARK-LLM---SFLGVAMGAFLVVLGLVSPLSL----AVFIVLFVALFF 330

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 67/333 (20%), Positives = 119/333 (35%), Gaps = 32/333 (9%)

Query: 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG 178
           ++LAF +  M     S   + +   FG +    GL+ +      AL +LP G+L   FGG
Sbjct: 19  STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGG 78

Query: 179 RKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           RK     +L+  +    L   A   P    L++  +L+G+  G S +      +   P +
Sbjct: 79  RKWTILSMLLLLIPCLGL-AFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFP-K 135

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           E+      + G  + G     L+AP +    G+ +   + G+  +A      +   G   
Sbjct: 136 EKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                A                            KA+F +K  W +   +F  ++G +  
Sbjct: 196 VPEHRASVK------------------PQLPAQLKAVFSNKDTWLLSLLYF-ATFGGFVG 236

Query: 356 LS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTV 414
            S +LP Y   +  L+   A  ++ L PL   L   +    +D +   G   T+     V
Sbjct: 237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRRVTLA----V 290

Query: 415 GAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF 447
                +    L+ +L    H  S  +F      
Sbjct: 291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323

Length = 417

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
           G LA  FG + ++   ++ +S+ T L  L +G +  L LSR +VG+G     + A+    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM-LTLSRFIVGMGMAGEYACASTYAV 132

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278
            S P   +S+A +F+  G   G++      P   E  GW + F++ GLL
Sbjct: 133 ESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-GLL 180

Length = 426

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 69/314 (21%), Positives = 108/314 (34%), Gaps = 39/314 (12%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAG------FMPG-LVLSRVLVGIGEGVSPS 222
           G      G +K L   +L+  + T L+ LL        + P  L+L+R++ G   G    
Sbjct: 56  GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG---LLG 279
            A   +A   P  +R    SF       G+  GLLLA      L    + Y+ G   LL 
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQ----VGAPVGLLLA-----ALTVLLLSYLLGDDALLE 166

Query: 280 IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIFRS-- 335
             W   F +         A L     Y+      +   E+  E  K    P         
Sbjct: 167 WGWRIPFLV--------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHR 218

Query: 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF 395
           K     +      +   Y   ++LPTY ++ L L+   A  V +L  +   +   ++   
Sbjct: 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGAL 278

Query: 396 ADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVW 455
           +D +   G    + I   + A+     V L   LLDS        F   +   L G +  
Sbjct: 279 SDRI---GRRPVLIIFTVLAALL---AVPLLMALLDSGSFTLF--FFLVLGMALIGGMYT 330

Query: 456 LAFASSKPQNFSTR 469
               S  P+ F T 
Sbjct: 331 GPMGSFLPELFPTE 344

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           + ++GL+ S F  G  +  L  G L   FG +K L  G +++ +   L     G    ++
Sbjct: 45  TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104

Query: 208 -LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
            + RV+VG+G G         I+   P + R    S        G   G+L+A
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSL----YQLGITFGILVA 153

Length = 449

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 62/333 (18%), Positives = 120/333 (36%), Gaps = 11/333 (3%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L    +   +  ++  ++ ++ ++  +        + GL+ S+FF GYA+  L  G L  
Sbjct: 5   LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            +G RKVL  G+L++ L T LL L     +  L++ R+L G+G G     A+ L++   P
Sbjct: 65  RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124

Query: 234 LE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG 292
              ER  AV  V  G     +A   L   ++           F L  +       ++   
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184

Query: 293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS---------KAVWAMIY 343
           +    A   P +  + + +     L  +   L  +    +              +  +  
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGL 244

Query: 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG 403
           A      G    L  LP        L+    A   +L  +   L   +      +L+   
Sbjct: 245 ALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDR 304

Query: 404 VETTMGITNTVGAVPGIVGVALTGYLLDSTHSW 436
           +  ++G+   + A   ++ + L   LL    + 
Sbjct: 305 LGRSLGLRAILLAGALLLAILLLVLLLALVLTI 337

Length = 338

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 152 GLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLS 209
           GL  +     Y L+ + GGWLA ++ G R+ +  G ++ ++   +L + +     GL + 
Sbjct: 65  GLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIG 123

Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267
             L+ +G G+     + L+    P ++  R    +  + G++ GS+   ++   +  N G
Sbjct: 124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183

Query: 268 WESVFYIFGL-----LGIAWFSGFKILQEG 292
           W   F +  +     L I       +   G
Sbjct: 184 WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213

Length = 498

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+   FG   +   +  +    G A+S   GG LA  FG R V   G +++ L      +
Sbjct: 28  PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
               +  L L+  L   G G++   A +   +  P ++R  A   + GG   GS     L
Sbjct: 88  ADS-LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I   G  + F   G++
Sbjct: 146 ITSVINLEGVPAAFIYMGII 165

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 32/128 (25%), Positives = 52/128 (40%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
            S   G  S+  G V ++F  G  L  L  G L + F    ++   + +  LA  ++ L 
Sbjct: 238 QSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT 297

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
               P  ++    +G+G G        L+ R +P E   R     F         GL+LA
Sbjct: 298 PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357

Query: 260 PPIIENLG 267
            P+ ++LG
Sbjct: 358 GPLADHLG 365

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTG---VLIWSLATALLPLLA 200
           G++   A ++  ++     L    G W   +++G +K +  G   +++     A+     
Sbjct: 44  GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD 103

Query: 201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR---AVSFVFGGLSFGSVAGLL 257
               GL      + +G G+  +  + ++ +     +  R     +  +  ++ GS    L
Sbjct: 104 LIFYGLGT----IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159

Query: 258 LAPPIIENLGWESVFYIFGLLGI 280
           LA  I EN G+      F L  +
Sbjct: 160 LAGVIAENYGYH---VGFNLAAV 179

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
              ++   ++SS+ GLV S F  G  +  L  GWL+  FG +K L    L++ +   L+ 
Sbjct: 60  FTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119

Query: 198 LLAGFMPGLVL--SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG 255
           L A  +   +L   RVL+GIG G++ +     ++   P   R    S            G
Sbjct: 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY----QLAITFG 175

Query: 256 LLLA 259
           +L+A
Sbjct: 176 ILVA 179

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG-EGVSPSAATDLIARSIPL 234
           +G R  +   ++++S+ T       G+   L ++R+++G+G  G   S+AT +I  S P 
Sbjct: 82  YGRRLAMVISIVLFSVGTLACGFAPGYWT-LFIARLVIGMGMAGEYGSSATYVI-ESWPK 139

Query: 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
             R++A  F+  G S G+V    +   ++   GW ++F+I G+L I 
Sbjct: 140 HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPII 185

Length = 496

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           AG VQ   S++  G+A+ QL  G +A  FG + V+  G L+++LA     L    +  L+
Sbjct: 25  AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT-IDQLI 83

Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN- 265
             R L G+    + S   + + R + P EE SR +SFV   L   ++A LL   PII   
Sbjct: 84  YMRFLHGLA-AAAASVVINALMRDMFPKEEFSRMMSFVT--LVM-TIAPLL--APIIGGW 137

Query: 266 ----LGWESVFYIFGLLGI 280
                 W ++F++  L  I
Sbjct: 138 LLVWFSWHAIFWVLALAAI 156

Length = 377

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL 206
           ++    L QS FF G  L     G+L+  FG +KVL    L+ +L TA+  +L  F P  
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL----LLSTLVTAVSGVLTAFSPNY 180

Query: 207 ---VLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
              ++ R+LVG+G  G+   A   L    +P ++R+   + +    S G V   L+A
Sbjct: 181 TVFLVFRLLVGMGIGGIWVQAVV-LNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA 236

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210
            G+V SS+F G  +  L  G++ K  G  +      LI++   A L L+ GF    +  R
Sbjct: 43  VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF-WSWLAWR 101

Query: 211 VLVGIG 216
            + GIG
Sbjct: 102 FVAGIG 107

Length = 381

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+    GW  +   +  + F           GW    +G R V+  G ++  L   L   
Sbjct: 28  PIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAY 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
            A  +P L  + V+ GIG G           +  P ++R  A      G   G+   ++ 
Sbjct: 88  -ADSLPALYAAAVVAGIGAGAVYGTCVGNALKWFP-DKRGLAAGLTAAGFGAGAALTVVP 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I+  G+++ F  FGL 
Sbjct: 146 IAAMIKVSGYQAAFMYFGLG 165

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 34/161 (21%), Positives = 78/161 (48%), Gaps = 13/161 (8%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGR 179
           L +++   D   +++ +  ++  FG  +   A L+ ++    +  + + G W  +   GR
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY--GR 76

Query: 180 KV-LQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           ++ + T ++++S  T    L  GF PG   + ++R+++GIG G    ++   +  S P  
Sbjct: 77  RLPMVTSIVLFSAGT----LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIE--NLGWESVFYI 274
            R++A   +  G + G+V    +   ++     GW ++F+I
Sbjct: 133 LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI 173

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.98
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.98
PLN00028	476	nitrate transmembrane transporter; Provisional	99.98
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.97
PRK10504	471	putative transporter; Provisional	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
PRK10133	438	L-fucose transporter; Provisional	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
PRK11043	401	putative transporter; Provisional	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PRK09874	408	drug efflux system protein MdtG; Provisional	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
TIGR00895	398	2A0115 benzoate transport.	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
PRK10054	395	putative transporter; Provisional	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.94
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.94
TIGR00898	505	2A0119 cation transport protein.	99.94
PRK09528	420	lacY galactoside permease; Reviewed	99.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.93
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.93
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.92
TIGR00901	356	2A0125 AmpG-related permease.	99.92
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.89
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.89
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
KOG0569	485	consensus Permease of the major facilitator superf	99.87
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.86
KOG0254	513	consensus Predicted transporter (major facilitator	99.86
KOG2615	451	consensus Permease of the major facilitator superf	99.86
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.86
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.85
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.85
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.84
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.83
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.82
PTZ00207	591	hypothetical protein; Provisional	99.81
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.8
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.79
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.79
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.79
KOG2563	480	consensus Permease of the major facilitator superf	99.78
PRK09669	444	putative symporter YagG; Provisional	99.78
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.76
PF13347	428	MFS_2: MFS/sugar transport protein	99.75
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.75
PRK10429	473	melibiose:sodium symporter; Provisional	99.73
PRK09848	448	glucuronide transporter; Provisional	99.72
KOG3626	735	consensus Organic anion transporter [Secondary met	99.7
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.68
PRK11462	460	putative transporter; Provisional	99.67
COG2211	467	MelB Na+/melibiose symporter and related transport	99.66
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.65
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.63
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.61
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.6
PRK10642	490	proline/glycine betaine transporter; Provisional	99.59
PRK15011	393	sugar efflux transporter B; Provisional	99.58
PRK05122	399	major facilitator superfamily transporter; Provisi	99.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.56
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.55
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.55
PRK03545	390	putative arabinose transporter; Provisional	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
PRK09528	420	lacY galactoside permease; Reviewed	99.53
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.53
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.53
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.52
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.52
PRK12382	392	putative transporter; Provisional	99.51
TIGR00893	399	2A0114 d-galactonate transporter.	99.5
PRK03699	394	putative transporter; Provisional	99.5
PRK03633	381	putative MFS family transporter protein; Provision	99.5
PRK10489	417	enterobactin exporter EntS; Provisional	99.5
PRK09705	393	cynX putative cyanate transporter; Provisional	99.5
PRK11663	434	regulatory protein UhpC; Provisional	99.49
PRK11010	491	ampG muropeptide transporter; Validated	99.49
PRK03893	496	putative sialic acid transporter; Provisional	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.48
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.47
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.47
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.47
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.45
PRK09952	438	shikimate transporter; Provisional	99.45
TIGR00891	405	2A0112 putative sialic acid transporter.	99.45
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.41
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.39
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.39
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.39
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.38
TIGR00900	365	2A0121 H+ Antiporter protein.	99.38
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.37
PRK10504	471	putative transporter; Provisional	99.36
PRK12307	426	putative sialic acid transporter; Provisional	99.36
PRK15075	434	citrate-proton symporter; Provisional	99.35
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.34
PRK11902	402	ampG muropeptide transporter; Reviewed	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.33
PRK10091	382	MFS transport protein AraJ; Provisional	99.33
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.33
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.33
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.32
PRK10054	395	putative transporter; Provisional	99.32
TIGR00895	398	2A0115 benzoate transport.	99.31
PLN00028	476	nitrate transmembrane transporter; Provisional	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.31
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.3
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.3
TIGR00898	505	2A0119 cation transport protein.	99.29
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.28
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.28
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.28
KOG0569	485	consensus Permease of the major facilitator superf	99.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.26
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.24
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.23
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.22
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.21
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.21
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.2
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.19
PRK10133	438	L-fucose transporter; Provisional	99.16
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.16
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.16
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.14
PF13347	428	MFS_2: MFS/sugar transport protein	99.12
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.12
KOG0637	498	consensus Sucrose transporter and related proteins	99.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.12
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.1
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.1
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.09
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.09
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.08
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.06
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.06
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.05
PRK09848	448	glucuronide transporter; Provisional	99.04
PRK10429	473	melibiose:sodium symporter; Provisional	99.03
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.03
PRK11043	401	putative transporter; Provisional	99.01
TIGR00901	356	2A0125 AmpG-related permease.	99.0
PRK09669	444	putative symporter YagG; Provisional	98.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.87
COG0477	338	ProP Permeases of the major facilitator superfamil	98.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.87
KOG3762	618	consensus Predicted transporter [General function	98.87
KOG2532	466	consensus Permease of the major facilitator superf	98.82
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.82
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.8
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.78
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.77
PRK11462	460	putative transporter; Provisional	98.75
COG2211	467	MelB Na+/melibiose symporter and related transport	98.72
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.71
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.65
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.63
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.58
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.57
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.55
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.5
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.46
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.46
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.45
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.44
KOG0254	513	consensus Predicted transporter (major facilitator	98.43
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.43
PF12832	77	MFS_1_like: MFS_1 like family	98.4
KOG3762	618	consensus Predicted transporter [General function	98.35
KOG2533	495	consensus Permease of the major facilitator superf	98.33
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.32
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.31
PTZ00207	591	hypothetical protein; Provisional	98.3
KOG2615	451	consensus Permease of the major facilitator superf	98.25
COG3202	509	ATP/ADP translocase [Energy production and convers	98.25
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.23
PF12832	77	MFS_1_like: MFS_1 like family	98.06
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.04
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.94
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.85
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.7
PRK03612	521	spermidine synthase; Provisional	97.69
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.68
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.62
KOG3810	433	consensus Micronutrient transporters (folate trans	97.59
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.57
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.49
KOG3097	390	consensus Predicted membrane protein [Function unk	97.44
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.34
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.33
KOG2563	480	consensus Permease of the major facilitator superf	97.26
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.13
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.01
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.97
TIGR00805	633	oat sodium-independent organic anion transporter.	96.79
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.62
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.44
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.44
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.43
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.3
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.07
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	95.77
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.76
KOG3626	735	consensus Organic anion transporter [Secondary met	95.63
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.46
KOG3880	409	consensus Predicted small molecule transporter inv	94.95
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.95
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.2
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	93.61
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.22
KOG0637	498	consensus Sucrose transporter and related proteins	92.85
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	91.89
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.88
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	90.19
KOG3880	409	consensus Predicted small molecule transporter inv	89.77
PRK03612	521	spermidine synthase; Provisional	89.25
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.22
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	87.96
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	87.9
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	84.84
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	84.74
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	83.38
KOG3810	433	consensus Micronutrient transporters (folate trans	83.02
KOG1307	588	consensus K+-dependent Ca2+/Na+ exchanger NCKX1 an	81.58
COG4262	508	Predicted spermidine synthase with an N-terminal m	81.36

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8e-35  Score=266.85  Aligned_cols=345  Identities=18%  Similarity=0.237  Sum_probs=281.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      |++++..+++++...++.+-.++.+.|.+.++.++|..|.|++.+.+.+.+.++..+.|.++||.++|+.+.+++++.++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai  106 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhH--HhhhcccCch
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPIIENLGWE  269 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~g~~  269 (470)
                      ..+++++ .++.+.+.++.++.|.++|..+|.+...+.+|++++|||+..++++..-++|+.+.|++.  +++..+.+||
T Consensus       107 ~nil~Gf-s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~  185 (448)
T COG2271         107 VNILFGF-SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR  185 (448)
T ss_pred             HHHHHhh-hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence            9999874 557799999999999999999999999999999999999999999999999999999999  8999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhcc----CCCCCHHHHhcCHHHHHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES----LKDVPWKAIFRSKAVWAMIYAH  345 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~  345 (470)
                      ..|++.++++++..++.+++.+++|++....+-++- .....+..   ++.++.    .+..-++.+++||.+|.+++..
T Consensus       186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~-~~d~~e~~---~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~  261 (448)
T COG2271         186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEY-RGDPLEIY---EEEKENEGLTAWQIFVKYVLKNKLIWLLALAN  261 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHh-hcCchhhh---hhhccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            999999999988777776666655544332211111 00000000   111111    0112246788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcch----------------
Q 012159          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI--ATGVETT----------------  407 (470)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~----------------  407 (470)
                      ++.+..-+++..|.|.|+.|..|++...+++..+.+-++++.|++++|+++||+.  +|.....                
T Consensus       262 vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~  341 (448)
T COG2271         262 VFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA  341 (448)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999986  3333222                


Q ss_pred             ------------------------------------------HHHHHHhhhh-HHHHHHHHHHHhhccCCceehhhHHHH
Q 012159          408 ------------------------------------------MGITNTVGAV-PGIVGVALTGYLLDSTHSWSMSLFAPS  444 (470)
Q Consensus       408 ------------------------------------------~g~~~~~~~~-~~~ig~~~~g~l~~~~~~~~~~~~~~~  444 (470)
                                                                .|+...++++ |.+.+....|++.|..+ |...+++..
T Consensus       342 ~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~  420 (448)
T COG2271         342 PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLS  420 (448)
T ss_pred             CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHH
Confidence                                                      6777777887 78888888888888744 555666655


Q ss_pred             HHHHHHHHHHHhhccCCC
Q 012159          445 IFFYLTGTIVWLAFASSK  462 (470)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~  462 (470)
                      +..+++.+++.......+
T Consensus       421 ~~a~l~~lll~~~~~~~~  438 (448)
T COG2271         421 IAALLAILLLLPVWNAEE  438 (448)
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            555555555544444333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-33  Score=261.16  Aligned_cols=325  Identities=19%  Similarity=0.257  Sum_probs=277.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      .+..++.+.++.|............+|.+.+|+|.+..+.|++.++|.++..++.++...+.||+.||++++..++++.+
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~   90 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV   90 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            35677788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.++. .++++++.+++.|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+|||++
T Consensus        91 ~n~l~-alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~  169 (394)
T COG2814          91 SNLLS-ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT  169 (394)
T ss_pred             HHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence            99877 57888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (470)
                      |+..++++++..+..+...+ ++.........                      ..+..+++|+|.++...+..++...+
T Consensus       170 F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~----------------------~~~~~~~l~~p~v~~~l~~t~l~~~g  226 (394)
T COG2814         170 FLAIAVLALLALLLLWKLLP-PSEISGSLPGP----------------------LRTLLRLLRRPGVLLGLLATFLFMTG  226 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCC-CccCCCCCCcc----------------------hhHHHHHhcCchHHHHHHHHHHHHcc
Confidence            99999998777665554443 11111111000                      01126789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch------------------------
Q 012159          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT------------------------  407 (470)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~------------------------  407 (470)
                      .+...+|+..++++..|++....+++...++++.++|..+.|++.|| +.++....                        
T Consensus       227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~  305 (394)
T COG2814         227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALA  305 (394)
T ss_pred             hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999 66655443                        


Q ss_pred             -------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHh
Q 012159          408 -------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWL  456 (470)
Q Consensus       408 -------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (470)
                                                     .++.....++|..+|..++|.+.|+.+ +....++.+...++.....+.
T Consensus       306 ~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         306 LLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHH
Confidence                                           778888899999999999999999954 555555555555555544444


Q ss_pred             hccCCC
Q 012159          457 AFASSK  462 (470)
Q Consensus       457 ~~~~~~  462 (470)
                      ..++.+
T Consensus       385 ~~~~~~  390 (394)
T COG2814         385 SARKDR  390 (394)
T ss_pred             HHhccc
Confidence            444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=3.4e-33  Score=278.24  Aligned_cols=338  Identities=12%  Similarity=0.078  Sum_probs=260.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      .+.++..+++.+++.++++..++...|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|+|+++.++.+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            35567778888888899999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc-
Q 012159          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-  266 (470)
Q Consensus       192 ~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  266 (470)
                      +.++++..    .++++.+++.|++.|++.+...|...+++++++|+++||+++|++..+.++|.+++++++.++.+.. 
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence            76665432    4677899999999999999999999999999999999999999999999999999999988776653 


Q ss_pred             --CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCC-H-HHHhcCHHHHHHH
Q 012159          267 --GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP-W-KAIFRSKAVWAMI  342 (470)
Q Consensus       267 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~  342 (470)
                        +|+..|.+.+++.++..+..+++.++++++......++. . .+....+.....+++..... + +..+++|.+|...
T Consensus       187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  264 (467)
T PRK09556        187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI-F-GEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC  264 (467)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc-c-cCccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence              599999888887766655555443333322111111100 0 00000000000000000001 1 2378999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---------------
Q 012159          343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------------  407 (470)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------------  407 (470)
                      +..++......+...|+|.|+++.+|++..++++......++.+++.++.|+++||+++|+....               
T Consensus       265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~  344 (467)
T PRK09556        265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ  344 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH
Confidence            99998888888899999999998899999999999999999999999999999999998875432               


Q ss_pred             ------------------------------------------HHHHHHhhhh-HHHHHHHHHHHhhc------------c
Q 012159          408 ------------------------------------------MGITNTVGAV-PGIVGVALTGYLLD------------S  432 (470)
Q Consensus       408 ------------------------------------------~g~~~~~~~~-~~~ig~~~~g~l~~------------~  432 (470)
                                                                .|+.+..+.+ +.+++|.+.|++.|            .
T Consensus       345 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~  424 (467)
T PRK09556        345 HATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTL  424 (467)
T ss_pred             hcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccc
Confidence                                                      6677778786 66899999999999            3


Q ss_pred             CCceehhhHHHHHHHHHHHH
Q 012159          433 THSWSMSLFAPSIFFYLTGT  452 (470)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~  452 (470)
                      .+ |...+.+..++.++...
T Consensus       425 ~~-~~~~f~~~~~~~~~~~~  443 (467)
T PRK09556        425 TG-WAGTFAALDIAAIGCIC  443 (467)
T ss_pred             cC-hHHHHHHHHHHHHHHHH
Confidence            33 66666655444444333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=6.1e-32  Score=269.54  Aligned_cols=357  Identities=25%  Similarity=0.434  Sum_probs=279.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhh----------------------hcCCCchhhHHHHHHHHHHHHHh
Q 012159          108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH----------------------RFGWNSSVAGLVQSSFFWGYALS  165 (470)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~~~~~~~~~~~~~~~  165 (470)
                      ..+.++.+..+++++..+.+.++..++...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            34456788888888888999999999999888766                      78999999999999999999999


Q ss_pred             hhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHH
Q 012159          166 QLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV  244 (470)
Q Consensus       166 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  244 (470)
                      +++.|+++||+|+|+++.++.++.+++.++.... ..+++.+++.|+++|++.+...+....++.+++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999998888887665432 244578999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHhhHHhhhccc-CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhcc
Q 012159          245 FGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES  323 (470)
Q Consensus       245 ~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (470)
                      ..+..+|.+++|++++.+.+.. |||+.|++.+++.++..++++.++++++.......++++. ...+   ...++..+.
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~i~~---~~~~~~~~~  248 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKK-YINS---SLQGQKGST  248 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHH-HHHh---hcccccCCC
Confidence            9999999999999999999884 9999999999988777666666554433222111111110 0000   000001111


Q ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      ....+++++++++.+|...+..++.....+.+..|+|.|+++.+|++..+.+++.++..++.+++.++.|+++||+++|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22346899999999999999999999999999999999999999999999999999999999999999999999988664


Q ss_pred             Ccch-----------------------------------------------------------------HHHHHHhhhhH
Q 012159          404 VETT-----------------------------------------------------------------MGITNTVGAVP  418 (470)
Q Consensus       404 ~~~~-----------------------------------------------------------------~g~~~~~~~~~  418 (470)
                      ....                                                                 .++.+..+.++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~  408 (465)
T TIGR00894       329 TLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIG  408 (465)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHH
Confidence            3210                                                                 77777888888


Q ss_pred             HHHHHHHHHHhhccC--CceehhhHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 012159          419 GIVGVALTGYLLDST--HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTR  469 (470)
Q Consensus       419 ~~ig~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (470)
                      +.++|.+.|++.+..  +.|...+.+.++..+ ++.+.+....+.+++++.++
T Consensus       409 ~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~-i~~i~~~~~~~~~~~~w~~~  460 (465)
T TIGR00894       409 GLIASTLAGNILSQDSKNVWLIVFLIMAFVNI-LCVIFYLIFGSAERQDWAKE  460 (465)
T ss_pred             HHHHHHhhheeeCCCCchHHHHHHHHHHHHHH-HHHHHeeeeecceecCCCCC
Confidence            888888888887654  335555555544433 44445555666666665443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=4.7e-32  Score=265.31  Aligned_cols=291  Identities=19%  Similarity=0.254  Sum_probs=229.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      .+|+.+..+++.+++.+++....+...|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++..+.++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG   84 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence            35788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc------
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE------  264 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------  264 (470)
                      ++.++.+ ..++++.+++.|++.|++.+...+....++.+++|+++|++++++++.+..+|.++++++++++.+      
T Consensus        85 ~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        85 IASTATM-FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9988875 567778999999999999999999999999999999999999999999999999999999998864      


Q ss_pred             ccCchHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhh--hhhhhHHhhhc--cCC----CCCHHHHhcC
Q 012159          265 NLGWESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKK--SLSASLEEMGE--SLK----DVPWKAIFRS  335 (470)
Q Consensus       265 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~----~~~~~~~~~~  335 (470)
                      ..|||++|++.+++.++..++. ++++|++.. .+...++++....+.  ......++.++  ...    ...++.++ +
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDK-AKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T  241 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCCCccc-CCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence            3699999999888876654444 444444322 111111111000000  00000000000  000    11233333 5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012159          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (470)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  404 (470)
                      +.+|...+..++.....+.+.+|+|.|+++. .|++..+++.+.....++.++++++.|+++||+++|+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            8888888888888888899999999999873 46788889999999999999999999999999987764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.3e-31  Score=261.48  Aligned_cols=342  Identities=16%  Similarity=0.179  Sum_probs=263.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      ++..+...++.+++.+++...++..+|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            44566667777888888888889999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.++++ ..++++.+++.|++.|++.+...+...+++.+++|+++|++++++++.+..+|..++|++++++.+.+|||+.
T Consensus       101 ~~~~~~-~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~  179 (434)
T PRK11663        101 INILFG-FSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYG  179 (434)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            887775 4566788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCC-H-HHHhcCHHHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP-W-KAIFRSKAVWAMIYAHFCG  348 (470)
Q Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~  348 (470)
                      |++.+++.++..+ ..+.+++++........++.+...  ..  ...+...+..+... + ...++++.+|.+.+..++.
T Consensus       180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
T PRK11663        180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA--LE--LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLV  255 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc--cc--cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHH
Confidence            9998887655433 334444433221111000000000  00  00000000001111 1 2367789999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcch-------------------
Q 012159          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI--ATGVETT-------------------  407 (470)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~-------------------  407 (470)
                      ......+..++|.|+++.+|++..+++...+...++.++++++.|++.||+.  +|+....                   
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFA  335 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccc
Confidence            8888888899999998788999999999999999999999999999999993  2222110                   


Q ss_pred             ---------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHH
Q 012159          408 ---------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  448 (470)
Q Consensus       408 ---------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  448 (470)
                                                             .|+.+..+.+|.+++|.+.|++.|..+ +...+.+.+++.+
T Consensus       336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~  414 (434)
T PRK11663        336 SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAG  414 (434)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHH
Confidence                                                   788888899999999999999999876 6666666655555


Q ss_pred             HHHHHHHhhcc
Q 012159          449 LTGTIVWLAFA  459 (470)
Q Consensus       449 ~~~~~~~~~~~  459 (470)
                      +.+...+...+
T Consensus       415 ~~~~~~~~~~~  425 (434)
T PRK11663        415 ISALLLLPFLN  425 (434)
T ss_pred             HHHHHHHHHHh
Confidence            55444443333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-31  Score=260.01  Aligned_cols=322  Identities=34%  Similarity=0.640  Sum_probs=273.2

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhccCc
Q 012159          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSRVLVGIGEGVS  220 (470)
Q Consensus       142 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~  220 (470)
                      .+++++..+-+++.+.+..|+++++++.|+++||+|.|+++..+.++.+++.++.+.... +++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            368889999999999999999999999999999999999999999999999988876543 3457899999999999999


Q ss_pred             hhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc-cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 012159          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT  299 (470)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (470)
                      +|+...+.++|.|++||++..++...+..+|.+++.+++|++.+. +||+++|++.++++++..++++.+..+.+.+.+.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            999999999999999999999999999999999999999999998 9999999999999999988888887766665443


Q ss_pred             CCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 012159          300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI  379 (470)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  379 (470)
                      ..++|....    .....++..++....||+++++++.+|...+..++.+++.+.+..+.|.|+++.+|++..+.|++.+
T Consensus       226 is~~El~~I----~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~sa  301 (466)
T KOG2532|consen  226 ISEKELKYI----EKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSA  301 (466)
T ss_pred             CCHHHHHHH----HhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHH
Confidence            333322111    0111111111225789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------------------------------------
Q 012159          380 LPPLASVLVTSIAAQFADNLIATGVETT----------------------------------------------------  407 (470)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------------------------------------------  407 (470)
                      ++.+...+..+++|.++||+..| .+..                                                    
T Consensus       302 lP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~  380 (466)
T KOG2532|consen  302 LPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY  380 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH
Confidence            99999999999999999999886 2221                                                    


Q ss_pred             --------------HHHHHHhhhhHHHHHHHHHHHhhcc--CCceehhhHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 012159          408 --------------MGITNTVGAVPGIVGVALTGYLLDS--THSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTR  469 (470)
Q Consensus       408 --------------~g~~~~~~~~~~~ig~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (470)
                                    +|+.+.++.+.++++|.+.|.+...  ...|...|++.++ ..+++.+.|.++.+.++|+|+++
T Consensus       381 ~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~-i~~~~~i~f~~f~s~e~~~w~~~  457 (466)
T KOG2532|consen  381 KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG-ILIVGNIIFLFFGSGEPAPWTKS  457 (466)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH-HHHHhchheeEeecCcccCccCC
Confidence                          8899999999999999999999842  2356666666554 45556688899989999988754

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=4.2e-31  Score=257.51  Aligned_cols=316  Identities=18%  Similarity=0.168  Sum_probs=249.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +|..++.+.++.++.........+.+|.+.+++|.+..+.|++.+.+.+++.++++++|++.||+|||+++..+.++.++
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   86 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA   86 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            34444444554444434444455668999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.+++. ..++++.+++.|++.|++.+...+...+++.+++|+++|++++|++..+..+|.+++|++++.+.+++|||++
T Consensus        87 ~~~~~~-~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~  165 (390)
T PRK03545         87 SHVLSA-LAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTT  165 (390)
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHH
Confidence            887774 5677799999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (470)
                      |++.+++.++..+..+...+++++++     +..                    ..+.++.+++|.++...+..++....
T Consensus       166 f~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (390)
T PRK03545        166 FLAIGGGALITLLLLIKLLPLLPSEH-----SGS--------------------LKSLPLLFRRPALVSLYLLTVVVVTA  220 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCC-----cch--------------------HHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            99998887665544433322211100     000                    01235788899888777766666666


Q ss_pred             HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch------------------------
Q 012159          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT------------------------  407 (470)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~------------------------  407 (470)
                      .+....+.+.|+++.+|++..+++.+.....++.++++++.|++.||+++|.....                        
T Consensus       221 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  300 (390)
T PRK03545        221 HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVL  300 (390)
T ss_pred             HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            66677888888888889999999999999999999999999999999987754322                        


Q ss_pred             ------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHH
Q 012159          408 ------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIV  454 (470)
Q Consensus       408 ------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  454 (470)
                                                    .|..+....+|..+||.+.|++.|..+ +...+...+.+..+.....
T Consensus       301 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        301 SIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHH
Confidence                                          577777888899999999999999875 4455555544444433333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4.5e-31  Score=257.04  Aligned_cols=329  Identities=13%  Similarity=0.162  Sum_probs=265.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +|.....++++.+..... ...++.+|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            445555555544443333 6677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc-CchH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWES  270 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~  270 (470)
                      +.++++ ..++++.+++.|++.|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||+
T Consensus        87 ~~~~~~-~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         87 GALMRE-LYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             HHHHHH-HCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            998886 56667899999999999999999999999999997 88999999999999999999999999998875 8999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHH
Q 012159          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (470)
                      .+.+.++..++..+..+...+++++.+.+  +  +                     ...++.+++++.|...+..++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~---------------------~~~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        165 TLAWWALPAVVALFAWWWQSAREVASSHK--T--T---------------------TTPVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccC--C--C---------------------cCCcccccCHhHHHHHHHHHHHHH
Confidence            88877666554443333332222111000  0  0                     011345677888888877777788


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----------------------
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-----------------------  407 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----------------------  407 (470)
                      .+.....++|.|+++ +|++..+++.+.++..++.++++++.+++.||+++|+....                       
T Consensus       220 ~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  298 (393)
T PRK09705        220 GYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW  298 (393)
T ss_pred             HHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            888899999999986 79999999999999999999999999999999998865543                       


Q ss_pred             --------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHH
Q 012159          408 --------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVW  455 (470)
Q Consensus       408 --------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (470)
                                                      .|..+.++.++..++|.+.|++.|..+.+...+.+..+..++.....+
T Consensus       299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK09705        299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL  378 (393)
T ss_pred             HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence                                            677788888999999999999999988888877777766666666667


Q ss_pred             hhccCCCCCCCCCC
Q 012159          456 LAFASSKPQNFSTR  469 (470)
Q Consensus       456 ~~~~~~~~~~~~~~  469 (470)
                      ....++.++++.|+
T Consensus       379 ~~~~~~~~~~~~~~  392 (393)
T PRK09705        379 RFAPARFPQLWVKE  392 (393)
T ss_pred             Hhccccccchhccc
Confidence            77777777776655

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=4.4e-31  Score=257.78  Aligned_cols=330  Identities=28%  Similarity=0.469  Sum_probs=262.7

Q ss_pred             HHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhH
Q 012159          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF  202 (470)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  202 (470)
                      +++..++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++..+++ ..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~   81 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA-FAGA   81 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-HHcC
Confidence            456677888888999999999999999999999999999999999999999999999999999998888887775 4557


Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHH
Q 012159          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (470)
Q Consensus       203 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~  282 (470)
                      ++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++.
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999988887666


Q ss_pred             HHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          283 FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY  362 (470)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  362 (470)
                      .+..+...++++++++...++++.....+...+..++..+..+....++.+++|+++...+..++..........+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (399)
T TIGR00893       162 GVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTY  241 (399)
T ss_pred             HHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            55554443333222111111111000000000000111122233456788999999999999999999999999999999


Q ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----------------------------------
Q 012159          363 FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-----------------------------------  407 (470)
Q Consensus       363 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----------------------------------  407 (470)
                      +++.+|.++.+.+++.....++.+++.++.|++.||+++|+....                                   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (399)
T TIGR00893       242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVAL  321 (399)
T ss_pred             HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            998899999999999999999999999999999999999961110                                   


Q ss_pred             ---------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHH
Q 012159          408 ---------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTI  453 (470)
Q Consensus       408 ---------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  453 (470)
                                                 .++.+....++..++|.+.|++.+..+.+...+.+.++..++....
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       322 GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence                                       7888888899999999999999998775666666555544444333

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=2e-30  Score=252.91  Aligned_cols=328  Identities=17%  Similarity=0.187  Sum_probs=257.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      ++++..+..++.+++........+..+|.+.+++|++..+.+++.+.+.+++.++++++|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35677778888888888888889999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-ccCch
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWE  269 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~~  269 (470)
                      ++.++.+ ..++++.+++.|++.|++.+...+...+++.+++|+++|+++++..+....+|..++|.+.+.+.. ..|||
T Consensus        84 i~~~l~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~  162 (394)
T PRK03699         84 LAVAGLM-FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY  162 (394)
T ss_pred             HHHHHHH-HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            8887775 456678899999999999998888999999999998999999999999999999999999888764 57999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (470)
                      +.|++.+++.++..+..+....++.++ +. .++++                 ...    +. ..++.++...+..++..
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~p~~~~-~~-~~~~~-----------------~~~----~~-~~~~~~~~~~~~~~~~~  218 (394)
T PRK03699        163 WVYACIGLVYVAIFILTLFSEFPALGK-HA-PKADK-----------------PVA----KE-KWGIGVLFLAIAALLYI  218 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccc-cC-ccccC-----------------ccc----cc-cCChHHHHHHHHHHHHH
Confidence            999998887766554443322111111 00 00000                 000    11 12466777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------
Q 012159          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT----------------------  407 (470)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------------  407 (470)
                      ...+.+..|+|.|+++.+|+++.+.+.+.+...++..+++++.|++.||+++|+....                      
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  298 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            7788889999999998899999999999999999999999999999999999876654                      


Q ss_pred             --------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHH-HHHH
Q 012159          408 --------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT-GTIV  454 (470)
Q Consensus       408 --------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~  454 (470)
                                                      .+.....+.+|..++|.+.|++.+..+.. ..++..+++..++ ....
T Consensus       299 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~-~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        299 YAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ-AALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch-hhhhhhHHHHHHHHHHHH
Confidence                                            56667777889999999999999987644 4444333333333 3334


Q ss_pred             HhhccCCCCC
Q 012159          455 WLAFASSKPQ  464 (470)
Q Consensus       455 ~~~~~~~~~~  464 (470)
                      .....+++.|
T Consensus       378 ~~~~~~~~~~  387 (394)
T PRK03699        378 LLGFVSKHRQ  387 (394)
T ss_pred             HHHHHHHHHh
Confidence            4444444444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=4.3e-30  Score=249.51  Aligned_cols=312  Identities=15%  Similarity=0.234  Sum_probs=250.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      +.+..+.+..+..........+.+|.+.+++|.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            34556666777777888888899999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHH
Q 012159          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (470)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  273 (470)
                      ++++ ..++++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..++|++++++.+..|||++|+
T Consensus        83 ~l~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         83 AMFT-LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             HHHH-HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            7774 567779999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHH
Q 012159          274 IFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (470)
Q Consensus       274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (470)
                      +.+++.++..+.. ..+|+.+++  .   +.+.     +                ...+.++++..|...+..++.....
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~~~--~---~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  215 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIRDE--A---KGGL-----R----------------EQFHFLRSPAPWLIFAATMFGNAGV  215 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcc--c---ccCH-----H----------------HHHHHhcChHHHHHHHHHHHHHHHH
Confidence            9888766554433 334432211  0   0000     0                0023567777777666655555555


Q ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------------
Q 012159          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------------------  407 (470)
Q Consensus       353 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------------  407 (470)
                      +....+++.|+++.+|+++.+.+++.....++.++++++.+++.||+++++....                         
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  295 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIF  295 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            5566677888887789999999999999999999999999999999998876553                         


Q ss_pred             ------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHH
Q 012159          408 ------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGT  452 (470)
Q Consensus       408 ------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  452 (470)
                                                    .+..+....+|..+||.+.|++.|..+++...+.+.+++..+...
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  370 (382)
T PRK10091        296 AFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS  370 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence                                          223356678999999999999999777777777765544444333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.98  E-value=5.6e-30  Score=261.51  Aligned_cols=186  Identities=14%  Similarity=0.165  Sum_probs=163.2

Q ss_pred             CchhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHH
Q 012159          109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI  188 (470)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  188 (470)
                      .+..|.++.+++++.+...++...++..+|.+.+++|++..+.+++.+++.++.+++.+++|+++||+|||++++++.++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34466777777778888888888899999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc---
Q 012159          189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN---  265 (470)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  265 (470)
                      .+++.++.+ +.++++.++++|++.|++.++..+...+++.|++|+++|++.++++..+..+|.++++.++..+...   
T Consensus       242 ~~i~~ll~a-fa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       242 NGFFAFFSS-FVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888887775 5567789999999999999999999999999999999999999999999999999999888776543   


Q ss_pred             ----------cCchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012159          266 ----------LGWESVFYIFGLLGIAWFSGFKILQEGETS  295 (470)
Q Consensus       266 ----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (470)
                                .+||+.+++.++..++.++..+++||+++.
T Consensus       321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrw  360 (742)
T TIGR01299       321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF  360 (742)
T ss_pred             hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                      358999988888777777777788887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.98  E-value=2e-29  Score=247.17  Aligned_cols=326  Identities=22%  Similarity=0.297  Sum_probs=255.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      ++|..+...++..++..++....+...|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            46777778888888999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      ++.+++. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|++
T Consensus        92 ~~~~~~~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  170 (406)
T PRK11551         92 LFSLATA-QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH  170 (406)
T ss_pred             HHHHHHH-HhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            8776664 456778999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhc---CHHHHHHHHHHH
Q 012159          271 VFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR---SKAVWAMIYAHF  346 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~  346 (470)
                      .|++.+++.++..+.. .+++++++....+..++++     +               ...+..++   .+..+...+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~~~  230 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----A---------------PVLRALFGEGRATATLLLWISYF  230 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----h---------------hhHHHHhhhhhhhHHHHHHHHHH
Confidence            9999887655544433 3345443221111000000     0               00011111   223344444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------
Q 012159          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------------  407 (470)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------  407 (470)
                      +.....+....+.|.|+++ .|+++.+.+.+.....++.++++++.|++.||+++++....                   
T Consensus       231 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (406)
T PRK11551        231 FTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFA  309 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            5555666777889999986 69999999999999999999999999999999998876543                   


Q ss_pred             ------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHH
Q 012159          408 ------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTG  451 (470)
Q Consensus       408 ------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  451 (470)
                                                          .|+.+....++..++|.+.|++.+..+.+...+.....+.+...
T Consensus       310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        310 GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence                                                77888889999999999999999887666655555554444444


Q ss_pred             HHHHhhc
Q 012159          452 TIVWLAF  458 (470)
Q Consensus       452 ~~~~~~~  458 (470)
                      ...+...
T Consensus       390 ~~~~~~~  396 (406)
T PRK11551        390 LAALLLV  396 (406)
T ss_pred             HHHHHHh
Confidence            4444343

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.98  E-value=2.9e-29  Score=249.91  Aligned_cols=276  Identities=14%  Similarity=0.138  Sum_probs=212.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +++.+....+..++.........+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34555555566666677777788889999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-------
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------  264 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------  264 (470)
                      +.++.+ ..++++.+++.|++.|++.+... ....++++++|+++|++++|+.+...++|..+++.+.+.+..       
T Consensus       114 ~~~~~~-~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        114 AVFCMS-LVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            877665 45566888899999999987654 456788999999999999999988777777777666654422       


Q ss_pred             --ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHH
Q 012159          265 --NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (470)
Q Consensus       265 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (470)
                        ..|||+.|++.+++.++..+..++++++.++....  +.+      +.     .+.++......+++.++++++|.+.
T Consensus       192 ~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  258 (476)
T PLN00028        192 PSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELK------KS-----GTMPKDSFSKVLRYGVTNYRTWILA  258 (476)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHH------hc-----CccccccHHHHHHHHHcCchhHHHH
Confidence              25899999999998877666666665443321100  000      00     0000000011346678889998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      +..++.......+..++|.|+.+.+|++...++.+.++..++.++++++.|+++||+++|
T Consensus       259 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        259 LTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            777766666677788899999888899999999999999999999999999999999876

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.98  E-value=4.2e-30  Score=236.49  Aligned_cols=327  Identities=21%  Similarity=0.282  Sum_probs=283.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      .++.+++..++..+.+..++.+++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I   91 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI   91 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence            46778888888889999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhh--hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC--
Q 012159          192 ATALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--  267 (470)
Q Consensus       192 ~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--  267 (470)
                      ..+..++..  ++++.+++++++.|++ |+.+......++.+||++++|.++|++. ..++|..+..+++..+....|  
T Consensus        92 P~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~  169 (417)
T COG2223          92 PCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL  169 (417)
T ss_pred             HHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH
Confidence            877765443  3346999999999999 5566888999999999999999999999 999999999999999998888  


Q ss_pred             -chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHH
Q 012159          268 -WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (470)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (470)
                       |+.+..+..+..++..+..++..++.++.+...++..                     ..+++.++++++.|.+.+.++
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~~~~~~v~~~~~~W~lsllY~  228 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------PAQLKAVFSNKDTWLLSLLYF  228 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------hhHHHHHhcCcchHHHHHHHH
Confidence             9999999888887776666666555444211111100                     023577889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------
Q 012159          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------------  407 (470)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------  407 (470)
                      ....++.++..++|.|+++++|.++.++|.+.....+.+.+.+.++|+++||+|.++....                   
T Consensus       229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~  308 (417)
T COG2223         229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF  308 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc
Confidence            9999999999999999999999999999999999999999999999999999999887665                   


Q ss_pred             ------------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHH
Q 012159          408 ------------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSI  445 (470)
Q Consensus       408 ------------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  445 (470)
                                                                .|++..++.+|+..-|...|...+.++.+...+.+...
T Consensus       309 ~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~  388 (417)
T COG2223         309 GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLA  388 (417)
T ss_pred             ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHH
Confidence                                                      88889999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHhhccCC
Q 012159          446 FFYLTGTIVWLAFASS  461 (470)
Q Consensus       446 ~~~~~~~~~~~~~~~~  461 (470)
                      ..+++....+..+.+.
T Consensus       389 ~~~~a~v~~~~~y~r~  404 (417)
T COG2223         389 FYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7777777777777765

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.98  E-value=1.7e-29  Score=253.11  Aligned_cols=292  Identities=17%  Similarity=0.128  Sum_probs=235.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +|..+..++++.++..++.++++..+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhcc-CccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      +.++++ ..++++.++++|+++|++.+...+.....+.+.+ |+++|++++|++.....+|..+||++++++.++.||||
T Consensus        84 ~~~~~~-~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~  162 (495)
T PRK14995         84 ASLAAA-FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS  162 (495)
T ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence            988875 5677799999999999999998888888887776 67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh-hccCCCCCCCCCCCccchhh-----------hh---hhhhh------------------hH
Q 012159          271 VFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYIN-----------MK---KSLSA------------------SL  317 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~------------------~~  317 (470)
                      .|++...+.++..++.+. +++++. ++.+..+......           ..   +....                  ..
T Consensus       163 ~f~i~~~~~~~~~~l~~~~l~~~~~-~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~  241 (495)
T PRK14995        163 VFLINVPIVLVVMGLTARYVPRQAG-RRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR  241 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC-CCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999988776655444433 443322 1111111000000           00   00000                  00


Q ss_pred             HhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          318 EEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD  397 (470)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  397 (470)
                      .+.....+..+ .+++++|.++...+..++.....++...++|.|++..+|+++.++|++.....++..++.++.|++.|
T Consensus       242 ~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~  320 (495)
T PRK14995        242 TQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS  320 (495)
T ss_pred             HHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111112222 46889999988888888888888888899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcc
Q 012159          398 NLIATGVET  406 (470)
Q Consensus       398 r~~~~~~~~  406 (470)
                      |+++|+...
T Consensus       321 r~g~~~~~~  329 (495)
T PRK14995        321 RLGLRLVAT  329 (495)
T ss_pred             HcCchHHHH
Confidence            999876544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=3.8e-29  Score=241.53  Aligned_cols=322  Identities=15%  Similarity=0.159  Sum_probs=254.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhh-hcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      .++.+....+++++.+.....+++..+.+.+ ++|++..|.+++.+++.+++.+++++.|++.||+|.|+++.++.++.+
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3567888888899999999999999888766 899999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHh----hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh---
Q 012159          191 LATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII---  263 (470)
Q Consensus       191 ~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---  263 (470)
                      +..++.++.    .++++.+++.|++.|++ +..++.....+++++|+++||+++|+.....++|..++++++..+.   
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~  190 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP  190 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            888777543    16779999999999998 7788999999999999999999999997777777766655554433   


Q ss_pred             --c-------------ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCC
Q 012159          264 --E-------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP  328 (470)
Q Consensus       264 --~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (470)
                        +             ..+|+.+.++..++.++..+..++..++.+..+.   .                       ...
T Consensus       191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~---~-----------------------~~~  244 (462)
T PRK15034        191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA---S-----------------------IAD  244 (462)
T ss_pred             HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc---C-----------------------HHH
Confidence              2             2347777778777776666555555443322100   0                       012


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-
Q 012159          329 WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-  407 (470)
Q Consensus       329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-  407 (470)
                      ...++|+|+.|.+.+.+++.+..+.++..++|.|+++.+  +.........+..+...+.++++|+++||+|+++.... 
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~  322 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN  322 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH
Confidence            367899999999999999999999989999999998754  33333333445668888999999999999999875543 


Q ss_pred             --------------------------------------------------------------------------------
Q 012159          408 --------------------------------------------------------------------------------  407 (470)
Q Consensus       408 --------------------------------------------------------------------------------  407 (470)
                                                                                                      
T Consensus       323 ~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~  402 (462)
T PRK15034        323 FIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAA  402 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHH
Confidence                                                                                            


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhhccCCC
Q 012159          408 -MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK  462 (470)
Q Consensus       408 -~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (470)
                       .|+....+.+|+.+-|.+.|...+.++.+...+....+..+++..+.|..+.++.
T Consensus       403 v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~  458 (462)
T PRK15034        403 ALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRK  458 (462)
T ss_pred             HHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence             1344466677777888888999988888888888888888888877777776654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=2.3e-28  Score=237.85  Aligned_cols=297  Identities=17%  Similarity=0.205  Sum_probs=233.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      .|+.+..+.++.+............+|.+.+++|.++.+.++..+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            45555555555555555555566678899999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.+++. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|..++|++++++.+++|||+.
T Consensus        98 ~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~  176 (394)
T PRK10213         98 SCLLVS-FANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNV  176 (394)
T ss_pred             HHHHHH-HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            887765 4677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-hccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (470)
                      |++.+++.++..+.... .|+++++    .  +..                    ..+.++.+++|.+|...+..++...
T Consensus       177 f~~~~~l~~~~~l~~~~~~p~~~~~----~--~~~--------------------~~~~~~~l~~~~~~~~~~~~~~~~~  230 (394)
T PRK10213        177 FNAAAVMGVLCIFWIIKSLPSLPGE----P--SHQ--------------------KQNTFRLLQRPGVMAGMIAIFMSFA  230 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCcc----c--ccc--------------------hhHHHHHhcCHHHHHHHHHHHHHHH
Confidence            99988766554433322 2322110    0  000                    0123567889999887777666666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----------------------
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-----------------------  407 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----------------------  407 (470)
                      ..+....+++.++.+.+|+++...+.+....+++.+++.++.+++.||.+++.....                       
T Consensus       231 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (394)
T PRK10213        231 GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATG  310 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            666666676443445679999999999999999999999999999999544322211                       


Q ss_pred             -------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCc
Q 012159          408 -------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHS  435 (470)
Q Consensus       408 -------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~  435 (470)
                                                     .+.......++..+|+.++|++.|..+.
T Consensus       311 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~  369 (394)
T PRK10213        311 VAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL  369 (394)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence                                           3344556678889999999999987653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=4.3e-29  Score=244.77  Aligned_cols=296  Identities=15%  Similarity=0.189  Sum_probs=221.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHH
Q 012159          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (470)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (470)
                      +++|+.+..++++++...++....++..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   87 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF   87 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34678888899999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC--
Q 012159          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--  267 (470)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--  267 (470)
                      +++.+++. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+  
T Consensus        88 ~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  166 (405)
T TIGR00891        88 SAGTLACG-FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG  166 (405)
T ss_pred             HHHHHHHH-HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            88887775 456678999999999999999999999999999999999999999999999999999999999988776  


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCC--CCCHHHHh-cCH-HHHHHHH
Q 012159          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIF-RSK-AVWAMIY  343 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~~~~~l  343 (470)
                      ||+.|++.++..++..+.....+++++..+....++.......+..... ...+...+  ....++.. +++ .+....+
T Consensus       167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (405)
T TIGR00891       167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE-HRIANIVMTLAAAMVQSAGKRWPTFVYLVV  245 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc-hhhhhhhhhhhHHhhhhhhhhhHHHHHHHH
Confidence            9999988766655555444445544321111110000000000000000 00000000  00001111 111 1222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      ...+..........++|.|+.+.+|++..+.+.+.....++.++++++.+++.||+++|+....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~  309 (405)
T TIGR00891       246 LVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVC  309 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHH
Confidence            3344444455667788999988889999999999999999999999999999999999886543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=2.5e-28  Score=240.97  Aligned_cols=273  Identities=15%  Similarity=0.197  Sum_probs=208.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcC---CCchhhHHHH---HHHHHHHHHhhhhhHHHhhhhcCcHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~  185 (470)
                      +++.+...+++.++..++...++...|.+.++++   .+..+.+...   +...++..++++++|+++||+|||+++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3445666677888999999999999999999984   4555444444   444455559999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhh
Q 012159          186 VLIWSLATALLPLLAGF-------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (470)
Q Consensus       186 ~~~~~~~~~~~~~~~~~-------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (470)
                      .++++++.+++++.++.       ...++++|+++|++.|..++...+++.|++|+++|+++.++.+.+...|.++++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999998887543322       23688999999999999999999999999999999999999988888888888876


Q ss_pred             HHhhh--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHH
Q 012159          259 APPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (470)
Q Consensus       259 ~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (470)
                      ...+.        +.+|||++|++.+++.++.......++|+++.+       ++             +.   .+..+++
T Consensus       180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~-------~~-------------~~---~~~~~~~  236 (432)
T PRK10406        180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE-------TR-------------AL---KEAGSLK  236 (432)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH-------Hh-------------hh---cccccHH
Confidence            65543        257999999987777665443322222221100       00             00   0122467


Q ss_pred             HHhcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          331 AIFRSKAVWAMIYAHFCG-SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      +++++++.+...+...+. ....+....|+|.|+++.+|++..+.+....+..++..++..+.|+++||+++|+....
T Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~  314 (432)
T PRK10406        237 GLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLC  314 (432)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            888999888776655543 66677888999999988889999888888888888888999999999999998875443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=7.1e-29  Score=244.92  Aligned_cols=311  Identities=18%  Similarity=0.228  Sum_probs=240.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +++.+....+.++...++.....+..|.+.+++|+++.+.+++.+++.++..++++++|+++||+|||+++.++.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~   95 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV   95 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            45667777788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.++.+ ..++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+..|||+.
T Consensus        96 ~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~  174 (426)
T PRK12307         96 GTGLSG-LASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA  174 (426)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence            887775 5566789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHH---HH
Q 012159          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF---CG  348 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~  348 (470)
                      |++..+..++........+++++..+.+..++.           ...+.........++++++++.++...+...   +.
T Consensus       175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (426)
T PRK12307        175 FFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG-----------KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI  243 (426)
T ss_pred             HHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc-----------cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            987544333222211111221110000000000           0000000011124577888887765443322   22


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---------------------
Q 012159          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------------------  407 (470)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------------------  407 (470)
                      ....+.+..++|.|+++ .|+++...+.+.+...++.++++++.|++.||+++|+....                     
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYL  322 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHH
Confidence            23334467789999986 59999999999999999999999999999999998865543                     


Q ss_pred             ------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCc
Q 012159          408 ------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHS  435 (470)
Q Consensus       408 ------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~  435 (470)
                                                          .|+.+..+.+++.++|.+.|++.+..+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~  386 (426)
T PRK12307        323 LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL  386 (426)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence                                                6677788888999999999999987763

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=1e-28  Score=245.07  Aligned_cols=330  Identities=18%  Similarity=0.255  Sum_probs=239.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      |.++..+++......+....++...|.+.++ |++..+.+++.+++.+++.++++++|+++||+|||++++++.++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~  106 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  106 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence            4555555556666666666677788888888 999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHhh---hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHH-HHHhhHHhhhcccCc
Q 012159          193 TALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV-AGLLLAPPIIENLGW  268 (470)
Q Consensus       193 ~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~g~  268 (470)
                      .+++++..   .+++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+..+|.. ++|+++..+....||
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw  186 (452)
T PRK11273        107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW  186 (452)
T ss_pred             HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence            87765432   35678889999999999998888888999999999999999999999998864 556554444344599


Q ss_pred             hHHHHHHHHHHHHHHH-HHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCC--HHHHhcCHHHHHHHHHH
Q 012159          269 ESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP--WKAIFRSKAVWAMIYAH  345 (470)
Q Consensus       269 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  345 (470)
                      |+.|++.+++.++..+ ..++++++++.......  ++.......  ...++..++.+..+  .+.+++++.+|...+..
T Consensus       187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (452)
T PRK11273        187 HAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI--EEYKNDYPD--DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIAN  262 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh--hhhhhcccc--ccccccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            9999998887666543 44445544332111000  000000000  00000000000001  13467899999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcch----------------
Q 012159          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA--TGVETT----------------  407 (470)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~--~~~~~~----------------  407 (470)
                      ++.....+....++|.|+++..|++..+++.+..+..++.+++.++.|+++||+++  |.....                
T Consensus       263 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~  342 (452)
T PRK11273        263 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN  342 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            88888888889999999998889999999998889999999999999999999943  322111                


Q ss_pred             ------------------------------------------HHHHHHhhhhHHHH-HHHHHHHhhccCCceehhhHHHH
Q 012159          408 ------------------------------------------MGITNTVGAVPGIV-GVALTGYLLDSTHSWSMSLFAPS  444 (470)
Q Consensus       408 ------------------------------------------~g~~~~~~~~~~~i-g~~~~g~l~~~~~~~~~~~~~~~  444 (470)
                                                                .|+.+..+.+++.+ +|.+.|++.|..+ +...+.+++
T Consensus       343 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~  421 (452)
T PRK11273        343 PAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMI  421 (452)
T ss_pred             cccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHH
Confidence                                                      66666677777554 7899999998876 555555444


Q ss_pred             HHHH
Q 012159          445 IFFY  448 (470)
Q Consensus       445 ~~~~  448 (470)
                      ..++
T Consensus       422 ~~~~  425 (452)
T PRK11273        422 GGSI  425 (452)
T ss_pred             HHHH
Confidence            4333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=3.6e-28  Score=238.21  Aligned_cols=309  Identities=16%  Similarity=0.135  Sum_probs=246.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      .+.....+.+..++..+....+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            44555566666777777888888889999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.++.. ..++++.+++.|++.|++.+...+...+.+.|++|+++|++++++......+|..+||.+++.+.++.+||+.
T Consensus        91 ~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~  169 (406)
T PRK15402         91 TCLAIL-LAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGM  169 (406)
T ss_pred             HHHHHH-HHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHH
Confidence            877764 4566788999999999999988889999999999999999999999888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-hccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (470)
                      |++.+++.++..+..+. .++++++.++    +...    +   +         ...+++.++++|.++...+..++...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (406)
T PRK15402        170 FVLFAALAALSFFGLWRAMPETAGRVGE----KLSL----K---E---------LGRDYKLVLKNRRFVAGALALGLVSL  229 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCccccc----cccH----H---H---------HHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99988887665554433 3332211100    0000    0   0         01124678899999988887777766


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----------------------
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-----------------------  407 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----------------------  407 (470)
                      .......+.|.|+++.+|+++.+.++......++.+++.++.+++.||+++|+....                       
T Consensus       230 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  309 (406)
T PRK15402        230 PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAY  309 (406)
T ss_pred             HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence            666677778999888889999999988888888899999999999999998765432                       


Q ss_pred             ------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhH
Q 012159          408 ------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLF  441 (470)
Q Consensus       408 ------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  441 (470)
                                                          .+..+....++..+|+.+.+.+.+..+.+...+.
T Consensus       310 ~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~  379 (406)
T PRK15402        310 LWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLF  379 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Confidence                                                6666667777888888888888877665544333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=1.8e-28  Score=237.86  Aligned_cols=265  Identities=17%  Similarity=0.216  Sum_probs=211.4

Q ss_pred             HHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q 012159          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (470)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  201 (470)
                      ...+.......+++..|.+.+++|++..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++++ ..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~~   89 (377)
T TIGR00890        11 IMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA-IAD   89 (377)
T ss_pred             HHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH-HHH
Confidence            3333444466778889999999999999999999999999999999999999999999999999999988887775 567


Q ss_pred             HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHH
Q 012159          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA  281 (470)
Q Consensus       202 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  281 (470)
                      +++.+++.|++.|++.+...+.....+.+++| ++|++++++...+.++|..+++++.+.+.+..|||+.|++.+++.++
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  168 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLL  168 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            77999999999999999888888888899887 68999999999999999988877777777888999999999988777


Q ss_pred             HHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          282 WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT  361 (470)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  361 (470)
                      ..+..+++.++++++..+.+.+.+                  .+....++.++++.+|...+..++..........+.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (377)
T TIGR00890       169 VIVLGAFLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKP  230 (377)
T ss_pred             HHHHHHHheecCchhccccCcccc------------------hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            655554443322221111000000                  00123467788888888877777776666666677777


Q ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          362 YFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       362 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      |.+ .+|.+..+.+.+.....++.++++++.|++.||+++|+....
T Consensus       231 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  275 (377)
T TIGR00890       231 YGQ-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI  275 (377)
T ss_pred             HHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            776 478888889999999999999999999999999999876544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=3.8e-28  Score=236.50  Aligned_cols=272  Identities=18%  Similarity=0.219  Sum_probs=224.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      ++.+..+....+........+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            34444555555666677788888899999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHH
Q 012159          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (470)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  272 (470)
                      .+++. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.++.+||+.|
T Consensus        84 ~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  162 (385)
T TIGR00710        84 SLGLA-LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF  162 (385)
T ss_pred             HHHHH-HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            87774 45667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-hccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHH
Q 012159          273 YIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (470)
Q Consensus       273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (470)
                      ++.+++.++..+..++ .+++++.+++   ++.+         .         ....+++.+++|+++...+...+....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPETLPYEAR---IQIS---------T---------YFETFLLLLKSKMFWGYALIYGASFGG  221 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCccc---CCHH---------H---------HHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            9988877665554443 3332221110   0000         0         011246778899998888777777777


Q ss_pred             HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      .+....+.|.++++.+|+++.+.+.+.....++.++++++.|++.||+++|+...
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            7778888899998888999999999999999999999999999999999887554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=7.7e-28  Score=240.99  Aligned_cols=282  Identities=20%  Similarity=0.167  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchh-hHH-----HHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-AGL-----VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~-----~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (470)
                      ++.+....++.++..++...++...|.+.++++.+... .++     +.++..++..++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45667778889999999999999999999988643322 122     257778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhh
Q 012159          187 LIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (470)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (470)
                      ++++++.+++++. +++.        .++++|+++|++.|+.++...+++.|++|+++||++.++...+..+|..+|+.+
T Consensus        95 ~l~~i~~~~~a~~-~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642         95 VIMSISTFCIGLI-PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888644 4433        488999999999999999999999999999999999999998888888888766


Q ss_pred             HHhhh--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHH
Q 012159          259 APPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (470)
Q Consensus       259 ~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (470)
                      ...+.        ..+|||++|++.+++.++..++...++|+++........       ++.   . .+...+.+..+++
T Consensus       174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~-------~~~---~-~~~~~~~~~~~~~  242 (490)
T PRK10642        174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKL-------EQG---D-REGLQDGPKVSFK  242 (490)
T ss_pred             HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhh-------hhh---c-cccccccccCCHH
Confidence            55443        257999999997766555444444444433211000000       000   0 0000011233456


Q ss_pred             HHhcC-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          331 AIFRS-KAVWA-MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       331 ~~~~~-~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      +++++ ++.+. .....++....++.+..++|.|+++.+|++....++......++.+++.++.|+++||+|||+.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  320 (490)
T PRK10642        243 EIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI  320 (490)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            66653 33332 223334455677788899999998888999888888888888999999999999999999987544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=4.2e-28  Score=232.75  Aligned_cols=251  Identities=16%  Similarity=0.087  Sum_probs=195.1

Q ss_pred             HHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHH
Q 012159          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP  204 (470)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  204 (470)
                      .+...+..+++.+|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+. +.....++++
T Consensus         2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~~~~~   80 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDPFNYE   80 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHhccHH
Confidence            345667788899999999999999999999999999999999999999999999987765554443333 3323335778


Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHH
Q 012159          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (470)
Q Consensus       205 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  284 (470)
                      .+++.|++.|++.+. .+.....+++++|+++|++++++.+.+..+|.++++++++++.+++|||+.|++.+++.++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999986 4566667799999999999999999999999999999999999999999999998888766544


Q ss_pred             H-HHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          285 G-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF  363 (470)
Q Consensus       285 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (470)
                      . .+.++|+++.+.+    ..+   . +      +.      ..++++++++|.+|...+..++....++++..|+|.|+
T Consensus       160 ~~~~~lp~~p~~~~~----~~~---~-~------~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L  219 (368)
T TIGR00903       160 LVLAALPALPFQAAE----GFG---F-K------DA------VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAAL  219 (368)
T ss_pred             HHHHHcCCCCCCCCC----Ccc---h-H------HH------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 4445544322110    000   0 0      00      01357899999999999999999999999999999999


Q ss_pred             HHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          364 SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       364 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      ++ .|++.. .+....+..+.+.++   .++++||..|+
T Consensus       220 ~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~  253 (368)
T TIGR00903       220 RP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARA  253 (368)
T ss_pred             HH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhh
Confidence            76 588764 566655555555555   46777777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.97  E-value=3.4e-28  Score=240.40  Aligned_cols=288  Identities=16%  Similarity=0.227  Sum_probs=215.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +++.+..+.+.+...+.....+....|.+.+ +|+++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            3555566666677777777777777887776 599999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-ccC
Q 012159          192 ATALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLG  267 (470)
Q Consensus       192 ~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g  267 (470)
                      +.++++..   .++++.+++.|++.|++.+..++.....+.+++|+++|++++++++.+..+|..++|.+.+...+ ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            87665432   24556778899999999999999999999999999999999999999999999999888776444 568


Q ss_pred             chHHHHHHHHHHHHHHHH-HHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHH
Q 012159          268 WESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (470)
                      ||+.|++.+++.++..+. .++++++++....+..++.+ .+..+...+ ..+.+...+....+.+++++.+|...+..+
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR-NDYPDDYNE-KAEQELTAKEIFMQYVLPNKLLWYIAIANV  261 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc-ccccccccc-ccccccchHHHHHHHHccCchHHHHHHHHH
Confidence            999999988887665443 44444433221100000000 000000000 000000000011134788999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      +.....++...++|.|+++..|+++.+++++..+..++.++++++.|++.||++++
T Consensus       262 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       262 FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            87788888889999999988899999999999999999999999999999999644

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=2e-27  Score=232.34  Aligned_cols=317  Identities=14%  Similarity=0.108  Sum_probs=237.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      +.+....++.++..........+++.+.+++|.+..+.|++.+.+.++..++.+++|++.||+|||+++..+.++.+++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~   92 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH   92 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            34444555555555555555566777778899999999999999999999999999999999999999999998888776


Q ss_pred             HHHHH---hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHH-HHHHhhHHhhhcccCch
Q 012159          194 ALLPL---LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS-VAGLLLAPPIIENLGWE  269 (470)
Q Consensus       194 ~~~~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~g~~  269 (470)
                      +++..   ..++++.+++.|++.|++.+...+...+.+.+++|+++|++++|+.+.+.++|. .++|++++.+.+..||+
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~  172 (402)
T TIGR00897        93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM  172 (402)
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence            54421   234667888999999999888878888889999999999999999999999996 68999999999888977


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (470)
                      ..+|......++..+..+++.+++++.+.. +++++       .    ++     ....++.++++|.+|...+..++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  235 (402)
T TIGR00897       173 NTLWSALAFVLTGGVIALFSNKDIFTPQHM-QTREK-------F----SE-----LGKAATILFTNPNVLLGGMVRIINT  235 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCcccc-cCCcc-------h----hh-----HHHHHHHHHcChhHHHHHHHHHHHH
Confidence            666655444333333333332222111110 00000       0    00     0012457889999998888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------
Q 012159          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT----------------------  407 (470)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------------  407 (470)
                      ...+....+.|.|+++ +|++..+.+.+.....++..++.++.|+++||+++|+....                      
T Consensus       236 ~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  314 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH  314 (402)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            8888889999999875 79999999999899999999999999999999998765421                      


Q ss_pred             -------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHH
Q 012159          408 -------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL  449 (470)
Q Consensus       408 -------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  449 (470)
                                                           .|+.+....++..++|.+.|.+.+..+.. ..+++.+++.++
T Consensus       315 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~-~~~~~~a~~~~i  392 (402)
T TIGR00897       315 SFAVALIIAIALGIFLAGYVPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAI-GVVWIFAALYVV  392 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHH
Confidence                                                 77788888888888999888888876633 333443333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.97  E-value=5.7e-28  Score=239.36  Aligned_cols=334  Identities=15%  Similarity=0.177  Sum_probs=247.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +|.++..+++..+........++..+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   96 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL   96 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence            46666666666665556666678889999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhhhHHHHHHH-HHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          192 ATALLPLLAGFMPGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      +.++++ ..++++.+++ .|++.|++.+...+...+++.++++ ++|++++++.+.+..+|..++|++++.+.+.+|||+
T Consensus        97 ~~~~~~-~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~  174 (455)
T TIGR00892        97 GMILAS-FSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG  174 (455)
T ss_pred             HHHHHH-HhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence            887765 4455566654 5689999998777777888889996 899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhh-hH-HhhhccCCCCCHHHHhcCHHHHHHHHHHHHH
Q 012159          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSA-SL-EEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (470)
                      +|++.+++.++..+..+++.+.++..+....+.++.........+ .. ...++..+... .+++++|.++...+..++.
T Consensus       175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  253 (455)
T TIGR00892       175 SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLD-FSLFTHRGFLVYLSGNVIM  253 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcc-hHHhcCchHHHHHHHHHHH
Confidence            999999887665554444433221110000000000000000000 00 00000001111 2578899999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCcch-------------------
Q 012159          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATGVETT-------------------  407 (470)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~-------------------  407 (470)
                      .++.+....++|.|+++ .|++..+++++.++.+++.++++++.|++.||.  ++++....                   
T Consensus       254 ~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  332 (455)
T TIGR00892       254 FLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD  332 (455)
T ss_pred             HHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            88888888899999976 699999999999999999999999999999973  22221111                   


Q ss_pred             --------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHH
Q 012159          408 --------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL  449 (470)
Q Consensus       408 --------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  449 (470)
                                                            .|+++....++.++||.++|++.+..+.+...+.+.++..++
T Consensus       333 ~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li  412 (455)
T TIGR00892       333 YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS  412 (455)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence                                                  788899999999999999999999876676666655544433

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=4.6e-27  Score=234.99  Aligned_cols=318  Identities=20%  Similarity=0.271  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      +.++.++++.++..++.+.+.+.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            44566777888888888899999999999999999999999999999999999999999999999999999988888887


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHH
Q 012159          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (470)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  273 (470)
                      +++. ..++++.+++.|+++|++.+...+...+++.+++|+++|++++++.....++|..+||.+++.+.++.|||+.|+
T Consensus        90 ~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         90 LFCA-LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHH-HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            7664 456678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCccchh-------------hhhh--hhh-----------------hhHHhhh
Q 012159          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI-------------NMKK--SLS-----------------ASLEEMG  321 (470)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~-----------------~~~~~~~  321 (470)
                      +...+.++..+......++.+....+. +.....             ...+  ...                 ...++..
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRF-DLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN  247 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCC-ChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            988776655544444333222111110 000000             0000  000                 0001111


Q ss_pred             ccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012159          322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (470)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (470)
                      ...+..+ .++++||.++...+..++..........+.|.|++..+|.++...+++.....++.+++..+.+++.||+++
T Consensus       248 ~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~  326 (471)
T PRK10504        248 NNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGY  326 (471)
T ss_pred             CCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            1112223 358899999998888888888877777889999988789999999999999999999999999999999998


Q ss_pred             cCCcch----------------------------------------------------------HHHHHHhhhhHHHHHH
Q 012159          402 TGVETT----------------------------------------------------------MGITNTVGAVPGIVGV  423 (470)
Q Consensus       402 ~~~~~~----------------------------------------------------------~g~~~~~~~~~~~ig~  423 (470)
                      |+....                                                          .+..+....++..+|+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~  406 (471)
T PRK10504        327 RRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGV  406 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHH
Confidence            876653                                                          6777777888889999


Q ss_pred             HHHHHhhccCC
Q 012159          424 ALTGYLLDSTH  434 (470)
Q Consensus       424 ~~~g~l~~~~~  434 (470)
                      .+.|.+.+..+
T Consensus       407 ~i~g~ll~~~g  417 (471)
T PRK10504        407 TIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHhh
Confidence            99988877654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=4e-27  Score=229.77  Aligned_cols=271  Identities=18%  Similarity=0.173  Sum_probs=218.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      |.+....+..+........+.+.+|.+.+++|.+..+.++..+++.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS   82 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence            34455556666666777777888999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHH
Q 012159          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (470)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  273 (470)
                      +++. ..++.+.+++.|++.|++.+...+...+++.+++++++|++++++.+....+|..++|.+++.+.+..||++.|+
T Consensus        83 ~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~  161 (392)
T PRK10473         83 LLCS-LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY  161 (392)
T ss_pred             HHHH-HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence            7764 456668888999999999999899999999999999999999999999999999999999999888889999999


Q ss_pred             HHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHH
Q 012159          274 IFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (470)
Q Consensus       274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (470)
                      +.+++.++..+.. +.++|+++.+ ++  ++..                   .....++.++++.++...+...+.....
T Consensus       162 ~~~~~~~i~~~~~~~~~~~~~~~~-~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (392)
T PRK10473        162 TMAAMGILVLLLSLFILKETRPAR-AP--AASS-------------------KPRENSESLLNRFFLSRLVITTLSVTVI  219 (392)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcc-cC--Cccc-------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            9888776655443 3444432221 10  0000                   0011245678888777666655555555


Q ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       353 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      .....+.|.++++.+|+++.+.+.+.....++.+++.++.+++.||+++|+....
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~  274 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLT  274 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            5666777888888889999999999999999999999999999999999876554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=2.6e-28  Score=236.82  Aligned_cols=279  Identities=19%  Similarity=0.237  Sum_probs=220.9

Q ss_pred             HHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q 012159          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (470)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  201 (470)
                      .++..+.+...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++. ..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG-FST   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH-Hhh
Confidence            4567778888899999999999999999999999999999999999999999999999999999999888887775 456


Q ss_pred             HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHH-hhHHhhhcccCchHHHHHHHHHHH
Q 012159          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL-LLAPPIIENLGWESVFYIFGLLGI  280 (470)
Q Consensus       202 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~g~~~~~~~~~~~~~  280 (470)
                      +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|..++| .+++.+.+..+|++.|++.+++.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            7789999999999999999999999999999999999999999999999999999 577777778899999999888776


Q ss_pred             HHHHHHHh-hccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          281 AWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (470)
Q Consensus       281 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (470)
                      +..+..+. .+++++.......+++.....+.  .....+.+.......++.++++|.+|...+..++..........+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (379)
T TIGR00881       162 IVSLICFLLLRDSPQSCGLPPAEEMPNEEPDG--DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS  239 (379)
T ss_pred             HHHHHHheeeCCCccccccCccccCccccccc--ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            65444443 33332221111110000000000  0000000001112234677889999999888888888888899999


Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       360 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      |.|+++.+|+++.+.+.+.....++.++++++.+++.||..+++
T Consensus       240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  283 (379)
T TIGR00881       240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR  283 (379)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence            99999889999999999999999999999999999999875443

>PRK10133 L-fucose transporter; Provisional

Probab=99.96  E-value=5.5e-27  Score=230.68  Aligned_cols=276  Identities=16%  Similarity=0.177  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      ...+..+++.++...+.........|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            34556666777787888888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH--HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-c----
Q 012159          193 TALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-N----  265 (470)
Q Consensus       193 ~~~~~--~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~----  265 (470)
                      .+++.  ..+++++.+++.|+++|++.+...+..+.++.++.++++|...+++.+....+|..+||.+++.+.. .    
T Consensus       105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~  184 (438)
T PRK10133        105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ  184 (438)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            87652  3466778999999999999999999999999998777777778999999999999999998876541 0    


Q ss_pred             ---------------------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccC
Q 012159          266 ---------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESL  324 (470)
Q Consensus       266 ---------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (470)
                                           .+||++|+....+..+..++....+.++.+.++. .+ ++                ...
T Consensus       185 ~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~-~~-~~----------------~~~  246 (438)
T PRK10133        185 SQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-SD-AK----------------QGS  246 (438)
T ss_pred             chhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cc-cc----------------ccc
Confidence                                 2456666544433322222222222111110000 00 00                000


Q ss_pred             CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          325 KDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF-SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      ....+++++++|.++...+..++..........|.+.|+ ++.+|+++.++++......++.++++++.+++.||+++|+
T Consensus       247 ~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~  326 (438)
T PRK10133        247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_pred             hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            012346788999988887777888888888888899885 5678999999999999999999999999999999999886


Q ss_pred             Ccc
Q 012159          404 VET  406 (470)
Q Consensus       404 ~~~  406 (470)
                      ...
T Consensus       327 ~l~  329 (438)
T PRK10133        327 VLA  329 (438)
T ss_pred             HHH
Confidence            644

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=1.4e-27  Score=230.51  Aligned_cols=273  Identities=15%  Similarity=0.088  Sum_probs=221.3

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      +..+.++..+......+.+|.+..+++.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++...
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            44566777777888888899999999999999999999999999999999999999999999999998887777766644


Q ss_pred             hh----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHH
Q 012159          199 LA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (470)
Q Consensus       199 ~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  274 (470)
                      ..    .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||++++.+.+..|||+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33    16788999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 012159          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (470)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (470)
                      .++..++..+..+.++.+++++++....+++          ...+     ....++.++++|.++...+..++.......
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELAASEIQALSNA----------VLRD-----TREGIKFVLKNPLLRTLLLLALLFNLVFAP  228 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCCCccccccchh----------HHHH-----HHhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            8877665555444443322211111000000          0000     011356778899998888888777777766


Q ss_pred             HH-HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          355 CL-SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       355 ~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      .. .+.|.|.++.+|.++.+.+.+.....++.+++.++.+++.||+++++...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMT  281 (365)
T ss_pred             HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence            66 78899998878999999999999999999999999999999999886544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=7.4e-27  Score=226.84  Aligned_cols=305  Identities=14%  Similarity=0.091  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      +.+..++++.++.........+.+|.+.+++|.+..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777888888889999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHH
Q 012159          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (470)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  273 (470)
                      .+++ ..++++.+++.|++.|++.+...+...+.+.+..++++|++++++++.+.++|..+||.+++.+.+...+.. .+
T Consensus        86 ~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~  163 (381)
T PRK03633         86 AGLG-LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PW  163 (381)
T ss_pred             HHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HH
Confidence            7765 466778999999999999999888888888899988999999999999999999999999999877543333 33


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHH
Q 012159          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (470)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (470)
                      ..+.+....... ++.+.+++.. ++    +                    +..+.++.+++|.++......+.....+.
T Consensus       164 ~~~~~~~~~~~~-~~~~~~~~~~-~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (381)
T PRK03633        164 VTGLVLAAILPL-LFTRILNQQA-EN----H--------------------DSTSIWPMLKLRQARLGVNGCIISGIVLG  217 (381)
T ss_pred             HHHHHHHHHHHH-HHhcccCCCC-CC----C--------------------CCCCHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            323222221111 1211111110 00    0                    01134567788877765555555555566


Q ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch--------------------------
Q 012159          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT--------------------------  407 (470)
Q Consensus       354 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~--------------------------  407 (470)
                      ....++|.|+++ .|.++...+.+.+...++.+++++..|++.||+++|+....                          
T Consensus       218 ~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g  296 (381)
T PRK03633        218 SLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            677789999986 59999999999999999999999999999999999876542                          


Q ss_pred             --------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHH
Q 012159          408 --------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  448 (470)
Q Consensus       408 --------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  448 (470)
                                                .+..+....+|.++||.+.|++.|..+ +...+.+.+.+.+
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l  362 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSF  362 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence                                      344455678899999999999999876 4444444444333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=7.8e-27  Score=230.44  Aligned_cols=273  Identities=14%  Similarity=0.118  Sum_probs=201.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHH-HHH-----HHHHHHhhhhhHHHhhhhcCcHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ-SSF-----FWGYALSQLPGGWLAKIFGGRKVLQTG  185 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~  185 (470)
                      |++....++++.++.+++...++...|.+.++++.+..+.+.+. +..     .+...+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            45678888999999999999999999999999998887765433 222     222246789999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHh
Q 012159          186 VLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (470)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (470)
                      .++++++.+++++ .++++        .+++.|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.
T Consensus        93 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         93 LSIMASGTLLIAF-VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999888864 44434        46899999999999999999999999999999999999999988888888888


Q ss_pred             hHHhhh--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCH
Q 012159          258 LAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (470)
Q Consensus       258 ~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (470)
                      +++.+.        +.+|||++|++..+...+.    ++.++..++.++       .... +         .+......+
T Consensus       172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~----~~~~~~~~e~~~-------~~~~-~---------~~~~~~~~~  230 (434)
T PRK15075        172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI----FLIRRSLEETEE-------FLAR-K---------HRPSMREIF  230 (434)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH----HHHHHhcCCCHH-------HHHh-h---------hccccccHH
Confidence            777653        4679999998754332211    122211111000       0000 0         000001113


Q ss_pred             HHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          330 KAIFRSKAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       330 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      +...++++.+.. .+..++.....+.+..+.|.|+++.+|++..+.+++..+..++.+++.++.|+++||+++|+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~  308 (434)
T PRK15075        231 RSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLI  308 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            344555555544 33344455566778889999999888999999998888999999999999999999999887543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1e-28  Score=240.53  Aligned_cols=286  Identities=19%  Similarity=0.290  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHh-HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      ..++..++..++....+...++.. +..+.+|.+....+.+.+.+++.++++++++++|.+.||++..+.+....+++++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence            345556666777777776666555 4447799999999999999999999999999999999999988888888888887


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh------cc
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------EN  265 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~~  265 (470)
                      ..++.+. ..+++.+++.|++.|+.++..+|....+++.|+.+++|+..+|++.+..++|+++|++++..+.      ..
T Consensus       124 ~~~~~~~-~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  124 FGFLTAA-VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHHH-HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            7766654 6777999999999999999999999999999999999999999999999999999999998863      35


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHH
Q 012159          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (470)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (470)
                      .||||.|++.|++.++..++.++..++.+.+..-..++++....++......+...++.+...+++.+++|.+|.+.+..
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~  282 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCY  282 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHH
Confidence            68999999999998887766655555555444333333332222222212222222225667788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (470)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (470)
                      ++.....+++.+|+|.|+++..|++..++..+.....++++++.+++|.++||.
T Consensus       283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999999986679999999999999999999999999999994

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.96  E-value=2.9e-27  Score=237.55  Aligned_cols=287  Identities=22%  Similarity=0.232  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      +.+..++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34566777888888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHH
Q 012159          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (470)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  273 (470)
                      ++++ ..++++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++.|||+.|+
T Consensus        82 ~~~~-~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        82 LLCG-VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHHh-CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            7775 556778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh-hccCCCCCCCCCCCccch---------------hhhhhhhhhh------------------HHh
Q 012159          274 IFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNY---------------INMKKSLSAS------------------LEE  319 (470)
Q Consensus       274 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~------------------~~~  319 (470)
                      +.+.+.++..+..++ .+++++.. .+..+....               ........+.                  ..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAA-SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE  239 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccc-cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            988777655544433 33322211 111110000               0000000000                  011


Q ss_pred             hhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (470)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (470)
                      ..++.+..+ .+.+++|.++...+..++..+..+....++|.|+++.+|+++.+++++.....++.+++.++.|++.||+
T Consensus       240 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~  318 (485)
T TIGR00711       240 LTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI  318 (485)
T ss_pred             HcCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            111111122 4678899999888888888888888899999999998999999999999999999999999999999999


Q ss_pred             HhcC
Q 012159          400 IATG  403 (470)
Q Consensus       400 ~~~~  403 (470)
                      ++|+
T Consensus       319 ~~~~  322 (485)
T TIGR00711       319 DPRK  322 (485)
T ss_pred             CcHH
Confidence            9886

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=5.6e-27  Score=229.48  Aligned_cols=262  Identities=17%  Similarity=0.208  Sum_probs=214.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (470)
                      ..+.+..+...+....+.+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            33444555666777888888999999999999999999999999999999999999999999999999999998888777


Q ss_pred             HHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHH
Q 012159          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (470)
Q Consensus       197 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  276 (470)
                      . ..++++.++++|+++|++.+...+...+++.|+++++++++++++......+|..+||++++.+.++.|||+.|++.+
T Consensus        99 ~-~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~  177 (413)
T PRK15403         99 L-FTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA  177 (413)
T ss_pred             H-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4 567778999999999999887677778889999999999999999999999999999999999998899999999998


Q ss_pred             HHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 012159          277 LLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (470)
Q Consensus       277 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (470)
                      ++.++..+.. +.++++++.+++.    ...    +   .         ....++++++||.+|...+..++.....+..
T Consensus       178 ~~~~i~~~~~~~~lp~~~~~~~~~----~~~----~---~---------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  237 (413)
T PRK15403        178 VMGLIAFVGLLLAMPETVKRGAVP----FSA----K---S---------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSW  237 (413)
T ss_pred             HHHHHHHHHHHHhCCCCccccCCC----CCh----H---H---------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            8876665543 3455433211100    000    0   0         0113468899999999888888888888888


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (470)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (470)
                      ..+.|.++++.+|+++.+.++......++.+++..+.+++.++.
T Consensus       238 ~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~  281 (413)
T PRK15403        238 VAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP  281 (413)
T ss_pred             HHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88899999998899999999988888888888888887766443

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=1.8e-26  Score=227.73  Aligned_cols=277  Identities=18%  Similarity=0.136  Sum_probs=201.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhc--CCCchhhHHHH-----HHHHHHHHHhhhhhHHHhhhhcCcHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRF--GWNSSVAGLVQ-----SSFFWGYALSQLPGGWLAKIFGGRKVL  182 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~g~r~~~  182 (470)
                      ++++.+...+++.++.+++...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            34567778888899999999998888775 55555  66666 45543     345566778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHH
Q 012159          183 QTGVLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA  254 (470)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  254 (470)
                      .++.++++++.+++++ .+++.        .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|..+
T Consensus        98 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         98 MLTVWMMGIATALIGL-LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999888764 44433        58889999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHhhh--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCC
Q 012159          255 GLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKD  326 (470)
Q Consensus       255 g~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (470)
                      ++.+...+.        +.+|||+.|++.+++.++........+|+++..+..    .+           .++  .+.+.
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~----~~-----------~~~--~~~~~  239 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQ----HE-----------QAA--AKKRI  239 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHH----hh-----------ccc--ccccC
Confidence            887776654        357999999988776544332222222221110000    00           000  00001


Q ss_pred             CCHHHHhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012159          327 VPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (470)
Q Consensus       327 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~  405 (470)
                      ...+.++++|+.|...+ ..++..+..+....+.|.|+++.+|++......+....++...++.++.|+++||+++|+..
T Consensus       240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~  319 (438)
T PRK09952        240 PVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY  319 (438)
T ss_pred             CHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            11234667777766544 44555666777888999999888899887666566667778888999999999999998644


Q ss_pred             c
Q 012159          406 T  406 (470)
Q Consensus       406 ~  406 (470)
                      .
T Consensus       320 ~  320 (438)
T PRK09952        320 I  320 (438)
T ss_pred             H
Confidence            3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=1.4e-26  Score=224.59  Aligned_cols=302  Identities=13%  Similarity=0.027  Sum_probs=229.2

Q ss_pred             HHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHH-HHHHHHHHHHHHHH
Q 012159          121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWSLATALLPL  198 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~  198 (470)
                      +.+++..+......+.+|. +.+++|.+..+.|++.+++.+...+.+++.|+++||+|||+.+++ +.++..++.+++ .
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF-A   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH-H
Confidence            4466677777788888886 568899999999999999999999999999999999999887665 444444454454 3


Q ss_pred             hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhH--HHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHH
Q 012159          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA--VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (470)
Q Consensus       199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  276 (470)
                      ..++++.+++.|++.|.+.+...|...++..++.++++|++.  .+....+.++|.++||++++.+.+..|||+.|++.+
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            556778888889999888888888888888998887777654  678888889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHh-hccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 012159          277 LLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (470)
Q Consensus       277 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (470)
                      ++.++..+..++ +++.++...++ .   +                    ..+.+..++++.++...+..++........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~-~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGA-L---T--------------------RLEVRGLLASRDTRLLFVACTLMWGCNILY  218 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCcccc-c---C--------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence            877665554443 55433211100 0   0                    011234566777776666666555555666


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------------
Q 012159          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT----------------------------  407 (470)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------------------  407 (470)
                      ..++|.|+++.+|.++.+.+.+.....+...++.++.|++.||+++|+....                            
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLN  298 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999988889999999988888878888899999999999999876554                            


Q ss_pred             --------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHH
Q 012159          408 --------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  448 (470)
Q Consensus       408 --------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  448 (470)
                                                .+..+....++..++|.+.|.+.+..+ +...+.+.+++.+
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~  364 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLI  364 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence                                      677777888899999999999888765 4444444444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=1.6e-26  Score=226.05  Aligned_cols=309  Identities=17%  Similarity=0.149  Sum_probs=229.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      +.+..+++..++..+......+.+|. +.+++|.+..+.|++.+++.+++.+++++.|+++||+|||++++.+.++++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            55566777788888888888888887 67889999999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHh--h-----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc
Q 012159          193 TALLPLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (470)
Q Consensus       193 ~~~~~~~--~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (470)
                      .+++...  .     .+++.+++.|++.|++.+...+...+++.+++|+++|++++++...+..+|.++||.+++.+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            5544322  1     24567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHH
Q 012159          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (470)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (470)
                      +||++.+++.+++.++..+...   +.++....   ++++                     .++++.++  .++......
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~---------------------~~~~~~~~--~~~~~~~~~  225 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLAR---PRPAVPPV---KGER---------------------LPFRRVLG--RVWPYGMGL  225 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh---cCCCCCCC---Cccc---------------------hhHHHHHH--HHHHHHHHH
Confidence            9999988876665543332221   11111100   0000                     01122222  223223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch------------------
Q 012159          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT------------------  407 (470)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~------------------  407 (470)
                      .+..+.+.....++|.|+++ .|+  ...+.......++.++++++.|++.||+++|+....                  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSP  302 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH
Confidence            34455556677788888875 465  345666778888899999999999999998775543                  


Q ss_pred             -------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHH
Q 012159          408 -------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  450 (470)
Q Consensus       408 -------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~  450 (470)
                                                           .++++....++..+++.+.|++.+..+ +...+.+.+++.++.
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~  381 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLG  381 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence                                                 777788888898999999999998765 555555555444444


Q ss_pred             HHHHH
Q 012159          451 GTIVW  455 (470)
Q Consensus       451 ~~~~~  455 (470)
                      ....+
T Consensus       382 ~~~~~  386 (399)
T PRK05122        382 LALTW  386 (399)
T ss_pred             HHHHH
Confidence            33333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=1.1e-26  Score=233.97  Aligned_cols=324  Identities=17%  Similarity=0.204  Sum_probs=234.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      ++|+.+..+++++++..++.....+.+|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||+++.++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   96 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            45677788888999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      ++.++++ ..++++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..++|.+++.+.++++||+
T Consensus        97 ~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  175 (496)
T PRK03893         97 VGTLACG-FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA  175 (496)
T ss_pred             HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            8887775 456778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhh---------------hccCCCCCHH-----
Q 012159          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEM---------------GESLKDVPWK-----  330 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-----  330 (470)
                      .|++.++..++.++.....+++++.......+.......+..........               ........+.     
T Consensus       176 ~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (496)
T PRK03893        176 LFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLG  255 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence            99875444433333333333322111110000000000000000000000               0000000000     


Q ss_pred             ------------H-H-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012159          331 ------------A-I-FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFA  396 (470)
Q Consensus       331 ------------~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~  396 (470)
                                  + . .+.+......+..++..........++|.|+++.+|++..+.+++.+...++.+++.++.|++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~  335 (496)
T PRK03893        256 LLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLG  335 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        0 0 0000011111111111111123557899999878899999999999999999999999999999


Q ss_pred             HHHHhcCCcch---------------------------------------------------------HHHHHHhhhhHH
Q 012159          397 DNLIATGVETT---------------------------------------------------------MGITNTVGAVPG  419 (470)
Q Consensus       397 dr~~~~~~~~~---------------------------------------------------------~g~~~~~~~~~~  419 (470)
                      ||+++|+....                                                         +++.+..+.++.
T Consensus       336 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~  415 (496)
T PRK03893        336 DWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGG  415 (496)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHH
Confidence            99998876553                                                         677778888899


Q ss_pred             HHHHHHHHHhhccCCc
Q 012159          420 IVGVALTGYLLDSTHS  435 (470)
Q Consensus       420 ~ig~~~~g~l~~~~~~  435 (470)
                      .+||++.|.+.+..+.
T Consensus       416 ~lgp~l~g~l~~~~g~  431 (496)
T PRK03893        416 ALAPILGALIAQRLDL  431 (496)
T ss_pred             HHHHHHHHHHhccCCh
Confidence            9999999999998763

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=2.2e-27  Score=233.42  Aligned_cols=321  Identities=14%  Similarity=0.050  Sum_probs=244.2

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      +++..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence            33345566666677788889988899999999999999999999999999999999999999999887777666554432


Q ss_pred             ----hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHH
Q 012159          199 ----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (470)
Q Consensus       199 ----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  274 (470)
                          ..++++.+++.|++.|++.+...+...+++.+++|+++|+++.++.....++|..+||.+++.+.+..+|++.|++
T Consensus       102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~  181 (417)
T PRK10489        102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL  181 (417)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence                1355678889999999998888888999999999999999999999999999999999999999998899999998


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 012159          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (470)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (470)
                      .++..++..+..+.+++.+++++.+    ++..          ++.     ...++..+++|.++...+..++... ...
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  241 (417)
T PRK10489        182 AAAGTFITLLPLLRLPALPPPPQPR----EHPL----------RSL-----LAGFRFLLASPVVGGIALLGGLLTM-ASA  241 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCccc----ccch----------HHH-----HHHHHHHHcChHHHHHHHHHHHHHH-HHh
Confidence            8877766666655555433221100    0000          000     0124567788887766655554433 356


Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---------------------------
Q 012159          355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------------------------  407 (470)
Q Consensus       355 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------------------------  407 (470)
                      ...++|.|+++.+|+++...+++.+...++.+++.++.+++.||.++++.+..                           
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            77789999998789999999999999999999999999999998665544332                           


Q ss_pred             ----------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhhcc
Q 012159          408 ----------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA  459 (470)
Q Consensus       408 ----------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (470)
                                                  .++.+....++..+|+.+.|++.+..+... .+...+.+..+.+.+.+....
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA-SASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-HHHHHHHHHHHHHHHHHHhcc
Confidence                                        777888888999999999999999876544 334334444444444444444


Q ss_pred             C
Q 012159          460 S  460 (470)
Q Consensus       460 ~  460 (470)
                      +
T Consensus       401 ~  401 (417)
T PRK10489        401 E  401 (417)
T ss_pred             c
Confidence            4

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=1.8e-26  Score=225.08  Aligned_cols=308  Identities=16%  Similarity=0.180  Sum_probs=240.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (470)
                      +..+++.++..++......+.+|.+++++|.+..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44666677777788888889999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHh--hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc--------
Q 012159          196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------  265 (470)
Q Consensus       196 ~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------  265 (470)
                      +...  .++++.+++.|++.|+|.+...+..+.++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            5322  356788999999999999999999999999999999999999999999999999999999887532        


Q ss_pred             ------------------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCC
Q 012159          266 ------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV  327 (470)
Q Consensus       266 ------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (470)
                                        .+||++|++.+++.++..+...+.+.++.++ .+   +++                 .....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-~~---~~~-----------------~~~~~  223 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-SD---AKQ-----------------ISFSA  223 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cc---ccc-----------------ccchh
Confidence                              3699999998887766554443332221111 00   000                 00011


Q ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          328 PWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      +.++++|+|+++...+..+++...+.+...+++.|.++.. +.+....+...+....+..+|+++++++.||+++|+.+.
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~  303 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLM  303 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            3357789999999888888888888888999999997532 344444555666777888999999999999999987654


Q ss_pred             h----------------------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccC-
Q 012159          407 T----------------------------------------------------MGITNTVGAVPGIVGVALTGYLLDST-  433 (470)
Q Consensus       407 ~----------------------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~-  433 (470)
                      .                                                    .+.....+.+|++++|++.|++.|.. 
T Consensus       304 i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~~~  383 (410)
T TIGR00885       304 AYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDMKE  383 (410)
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHHhc
Confidence            3                                                    23334445589999999999999953 


Q ss_pred             ----CceehhhHHHH
Q 012159          434 ----HSWSMSLFAPS  444 (470)
Q Consensus       434 ----~~~~~~~~~~~  444 (470)
                          +++...+++..
T Consensus       384 ~~~~~~~~~~~~~~~  398 (410)
T TIGR00885       384 IAAAPAVNTSFILPL  398 (410)
T ss_pred             ccccCccchHHHHHH
Confidence                34555555543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=4e-26  Score=222.88  Aligned_cols=266  Identities=18%  Similarity=0.211  Sum_probs=216.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      .++.+....+..++..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            45666666666667777777888889999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.++.. ..++++.+++.|++.|++.+...+....+..|.++++++++++++.+.+..++..++|.+++.+.+..|||+.
T Consensus        86 ~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~  164 (394)
T PRK11652         86 GTLVAL-FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRAC  164 (394)
T ss_pred             HHHHHH-HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence            877764 5566789999999999998888888888999999989999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHH-HHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (470)
Q Consensus       272 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (470)
                      |++.+++.++..+. .+..+|+++.+++    +.+                   ....++..+++|.++...+..+....
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (394)
T PRK11652        165 YLFLLLLGAGVTFSMARWMPETRPADAR----RTR-------------------VLASYRTLLSNRRFNCYLLMLIGTLA  221 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCccccc----hhH-------------------HHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            99988776554433 3344443221100    000                   01124667888888877666666666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (470)
                      .......+.+.++++.+|+++.+.+++.....++.+++..+.+++.||+++
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667778889988889999999999888889999999999999999873

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=8.3e-27  Score=233.58  Aligned_cols=343  Identities=19%  Similarity=0.219  Sum_probs=237.8

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCC--------chhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHH
Q 012159          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWN--------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (470)
                      ....+.++.++..++...+....+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~  108 (481)
T TIGR00879        29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA  108 (481)
T ss_pred             HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence            333444455556677777888888888877777        899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh--HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhH---Hh
Q 012159          187 LIWSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA---PP  261 (470)
Q Consensus       187 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~  261 (470)
                      ++++++.++......  +++.+++.|++.|++.+...+...+++.|++|+++|++++++++.+..+|..++++++   +.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~  188 (481)
T TIGR00879       109 LLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS  188 (481)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            988888877644332  3458999999999999999999999999999999999999999999999999999999   77


Q ss_pred             hhcccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc--chhhh-----------hh--hhhhhHHhhhccCCC
Q 012159          262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS--NYINM-----------KK--SLSASLEEMGESLKD  326 (470)
Q Consensus       262 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~--~~~~~~~~~~~~~~~  326 (470)
                      +.+..+||+.|++.++..++..+..++++++++....+...++  +....           .+  .......+.+.....
T Consensus       189 ~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (481)
T TIGR00879       189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQ  268 (481)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhcc
Confidence            6677899999999777666666666666654321100000000  00000           00  000000000000111


Q ss_pred             CCHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          327 VPWKAIFR------SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (470)
Q Consensus       327 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~  400 (470)
                      ..++..++      .+.++...+..+...........+.|.+++ .+|++....+++.....++.+++.++.|++.||++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  347 (481)
T TIGR00879       269 PSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFG  347 (481)
T ss_pred             ccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11333333      222333333333333334445666777765 57999988899999999999999999999999999


Q ss_pred             hcCCcch------------------------------------------------------------------HHHHHHh
Q 012159          401 ATGVETT------------------------------------------------------------------MGITNTV  414 (470)
Q Consensus       401 ~~~~~~~------------------------------------------------------------------~g~~~~~  414 (470)
                      +|+....                                                                  .+..+..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  427 (481)
T TIGR00879       348 RRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA  427 (481)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHH
Confidence            8764332                                                                  6677777


Q ss_pred             hhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhhcc
Q 012159          415 GAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA  459 (470)
Q Consensus       415 ~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (470)
                      ..++.++++.+.|.+.+..+ +...+.+.+++.++.....+....
T Consensus       428 ~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       428 NWLANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHHheecc
Confidence            88888899999998887654 444444544444444444444333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=4.3e-26  Score=223.21  Aligned_cols=263  Identities=14%  Similarity=0.176  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (470)
                      +..+.+..++..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   87 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG   87 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence            33344445556667778888888899999999999999999999999999999999999999999999998888888776


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHH
Q 012159          196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (470)
Q Consensus       196 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  275 (470)
                      .. ..++++.+++.|++.|++.+...+...+++.|+++++++++..+.......+|..++|.+++++.+++|||+.|++.
T Consensus        88 ~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         88 ML-WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             HH-HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            64 55667889999999999988888888899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 012159          276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (470)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (470)
                      +++.++..+..+.+++++++++     +++                   +..++++.+++|.++...+...+........
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~-----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (401)
T PRK11043        167 FAITLLLILPTLRLKPSKKARK-----QSQ-------------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAW  222 (401)
T ss_pred             HHHHHHHHHHHHHcCCCCCccc-----cch-------------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence            8887766665555544332111     000                   0113467888888887666666666666777


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012159          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (470)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  404 (470)
                      ..+.|.++++ +|+++.+.++......++.+++.++.+++.||+++++.
T Consensus       223 ~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~  270 (401)
T PRK11043        223 LTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL  270 (401)
T ss_pred             HHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            7888998875 69999999998888888999999999999999987764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=1.4e-27  Score=229.38  Aligned_cols=269  Identities=28%  Similarity=0.425  Sum_probs=217.6

Q ss_pred             HHHHHHHHhhhhhHHHhHH-hhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          120 SLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      +++.++..+......+.+| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.. 
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-
Confidence            5667777888888899999 79999999999999999999999999999999999999999999999999988855554 


Q ss_pred             hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHH
Q 012159          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (470)
Q Consensus       199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  278 (470)
                      ++++.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+||+.|++.+++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~  160 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL  160 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence            43555699999999999999999999999999999999999999999999999999999999999899999999999998


Q ss_pred             HHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCC-CHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Q 012159          279 GIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV-PWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (470)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (470)
                      .++..++. ++++++++++......+++              .+++.+.. .++.++++|.+|...+..++..+......
T Consensus       161 ~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (352)
T PF07690_consen  161 SLIAAILFILFLPEPPPPRERESPKESE--------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFS  226 (352)
T ss_dssp             HHHHHHHHHCCC---STTTT--SSTTTT----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHhhhhhhcccccccccccccc--------------cccccccccccccccccchhhhhhhhhhHHHHHHHHhh
Confidence            88776643 3333333332222211110              00000111 24677777877766666666666778899


Q ss_pred             HHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          357 SWLPTYFSEELSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       357 ~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      .++|.|+++.+|++ ..+.+.+..+..+..++++++.|++.||+++++
T Consensus       227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  274 (352)
T PF07690_consen  227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR  274 (352)
T ss_dssp             HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            99999988889999 789999999999999999999999999998765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=3.5e-26  Score=222.03  Aligned_cols=259  Identities=20%  Similarity=0.267  Sum_probs=213.9

Q ss_pred             hhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012159          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (470)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (470)
                      +....+.+.+|.+.+++|++..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++. ..++++.++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   83 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LAQTIDQLI   83 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HHccHHHHH
Confidence            3445667889999999999999999999999999999999999999999999999999999888887775 456678899


Q ss_pred             HHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHH-
Q 012159          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF-  286 (470)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~-  286 (470)
                      +.|++.|++.+...+...+++.+++++++|++++++.+.+..+|..++|.+++.+.+..+|++.|++.+++.++..+.. 
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888776654444 


Q ss_pred             HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (470)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (470)
                      +..+++++.++++.   .+.    +   +         ...++++.+++|.++...+..++..........+.|.++.+.
T Consensus       164 ~~~~~~~~~~~~~~---~~~----~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (377)
T PRK11102        164 FFIPETLPKERRQP---FHL----R---T---------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL  224 (377)
T ss_pred             HhCCccCcccccCC---CCh----H---H---------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            34444322111100   000    0   0         001245678889888877777777777777777888888888


Q ss_pred             hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      +|+++.+.+.+.....++.++++++.+++.||+++|+...
T Consensus       225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  264 (377)
T PRK11102        225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLR  264 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            8999999999999999999999999999999999987554

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=7e-26  Score=221.02  Aligned_cols=307  Identities=16%  Similarity=0.131  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      .+..+.++.++..+......+.+|. +.+++|.|..++|++.+++.++..++++++|+++||+|||++++.+.+...++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444555566666777777788886 678999999999999999999999999999999999999999999877766554


Q ss_pred             HHHH---H----hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          194 ALLP---L----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       194 ~~~~---~----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      +...   .    ...+++.+++.|+++|++.+...+...+++.+++|+++|++++++++.+..+|..+||++++++.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3221   1    13466889999999999999888888999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHH
Q 012159          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (470)
Q Consensus       267 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (470)
                      ||++.+++..++.++........++.++   ++  ++ +                     .+.++.+  +.+|...+..+
T Consensus       176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~-~---------------------~~~~~~~--~~~~~~~~~~~  226 (392)
T PRK12382        176 GFAALALTTMVLPLLAWAFNGTVRKVPA---HA--GE-R---------------------PSLWSVV--GLIWKPGLGLA  226 (392)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhccCCCC---Cc--cc-C---------------------chHHHHH--HHHHHhHHHHH
Confidence            9998777655444333222211111111   00  00 0                     0011111  12222222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------
Q 012159          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------------  407 (470)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------  407 (470)
                      +..........+.|.|+++ .|++  ..++......++.++++++.|++.||+++|+....                   
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAW  303 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHH
Confidence            3344555667788888875 4665  35566667778889999999999999999877654                   


Q ss_pred             ------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHH
Q 012159          408 ------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTG  451 (470)
Q Consensus       408 ------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  451 (470)
                                                          .|+.+....++..++|.+.|++.+..+ +...+.+.+++.++..
T Consensus       304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~  382 (392)
T PRK12382        304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGI  382 (392)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHH
Confidence                                                778888889999999999999998765 5555555554444444


Q ss_pred             HHH
Q 012159          452 TIV  454 (470)
Q Consensus       452 ~~~  454 (470)
                      ...
T Consensus       383 ~~~  385 (392)
T PRK12382        383 IVT  385 (392)
T ss_pred             HHH
Confidence            333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=5e-26  Score=219.99  Aligned_cols=276  Identities=16%  Similarity=0.155  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (470)
                      +..++++++.......+.+..|. +.+++|++..+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34666777778888889999995 99999999999999999999999999999999999999999999999999998877


Q ss_pred             HHHhhh-HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc----------
Q 012159          196 LPLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------  264 (470)
Q Consensus       196 ~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------  264 (470)
                      +++ .+ +++.+++.|++.|++.+. .+....++.+++|+++|++++++...+.++|..+++.+++.+..          
T Consensus        84 ~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        84 AGL-AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHH-HhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            754 45 778899999999998654 56678999999999999999999998888888888877776654          


Q ss_pred             ccCchHHHH-HHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHH
Q 012159          265 NLGWESVFY-IFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (470)
Q Consensus       265 ~~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (470)
                      +.+||+.|+ ..+++.++..++. ...+++++.++++.+.+.+.   .+.  .     .+........+.+++|++|...
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~-----~~~~~~~~~~~~~~~~~~~~~~  231 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG---ARW--S-----VGTGALGDQLKVFRDRHTWILA  231 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccc---ccc--c-----ccchhHHHHHHHHhccchhhHH
Confidence            348999994 4455444333333 33333322211110000000   000  0     0000001346778889999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012159          343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (470)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  404 (470)
                      +..++..........+.|.|+++.+|+++.+++.+.....+..++++++.|++.||+++|+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  293 (366)
T TIGR00886       232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK  293 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh
Confidence            88888777788889999999999899999999999999999999999999999999999863

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.96  E-value=1.4e-25  Score=220.21  Aligned_cols=320  Identities=14%  Similarity=0.136  Sum_probs=236.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchh-----hHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHH
Q 012159          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-----AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (470)
                      ....++++.++..+......+.+|.+.+++|.+..+     .|++.+++.++..++.+++|+++||+|||+++..+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   94 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM   94 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence            344556667777788888888999999999988654     488999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCch
Q 012159          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                      +++.+++. ..++++.+++.|++.|++.+ ..+....++.+++++++|++++++......+|..++|.+++.+.+..+|+
T Consensus        95 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  172 (408)
T PRK09874         95 GIVMVLMG-LAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR  172 (408)
T ss_pred             HHHHHHHH-HHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            88776664 45677899999999999854 56778888999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHH-HHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM-IYAHFCG  348 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~  348 (470)
                      +.|++.+++.++..+..+.+.++++...++.   ++ .        ..         ....+.+++++++.. .+..+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--------~~---------~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
T PRK09874        173 PVFFITASVLFLCFLVTLFCIRENFQPVSKK---EM-L--------HM---------REVVTSLKNPKLVLSLFVTTLII  231 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccccch---hh-h--------HH---------HHHHHhCcCCchHHHHHHHHHHH
Confidence            9999988877665554444333221111000   00 0        00         011344566666543 3333444


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch------------------
Q 012159          349 SWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLVTSIAAQFADNLIATGVETT------------------  407 (470)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~------------------  407 (470)
                      .........+++.|..+..+....   ..+.+..+.+++.+++.++.|++.||+++|+....                  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP  311 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence            445555667788888765443221   24556666778888999999999999998876554                  


Q ss_pred             -------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHH
Q 012159          408 -------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  450 (470)
Q Consensus       408 -------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~  450 (470)
                                                           .+..+....++..+||.+.|++.+..+ +...+.+.+++.++.
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~  390 (408)
T PRK09874        312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFN  390 (408)
T ss_pred             HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Confidence                                                 667777888999999999999988765 566666666555555


Q ss_pred             HHHHHhhc
Q 012159          451 GTIVWLAF  458 (470)
Q Consensus       451 ~~~~~~~~  458 (470)
                      ....+...
T Consensus       391 ~~~~~~~~  398 (408)
T PRK09874        391 AVYSWNSL  398 (408)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=1.1e-25  Score=219.13  Aligned_cols=268  Identities=15%  Similarity=0.092  Sum_probs=206.1

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (470)
                      .++++.++..++...+....+.+.+++|.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++++++.+++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            45666777777666666666777889999999999999999999999999999999999999999999999888776653


Q ss_pred             HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHH
Q 012159          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (470)
Q Consensus       198 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  277 (470)
                       ...+   .++.|+++|++.+...|...+++.|++|+++|++++|+.+....+|.++||.++|++.+. .|+..+.+.+.
T Consensus        87 -~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         87 -FGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence             3333   267899999999999999999999999999999999999999999999999999999885 47777776665


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012159          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (470)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (470)
                      +.++..+....++++++++++...+...   .   .    ++.     ...++.++++|.++...+..++..........
T Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~---~----~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  226 (393)
T PRK11195        162 IYLLAALFNLFIPRLGARRPGQSWNPIA---L---L----RDF-----FHACRVLWRDKLGRFSLAGTTLFWGAGATLRF  226 (393)
T ss_pred             HHHHHHHHHhcCCCCcccccccCCCHHH---H---H----HHH-----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            5544444445555443221111000000   0   0    000     01135677888777665555555555566677


Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012159          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (470)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~  405 (470)
                      .+|.|+++.+|.++.+.|.+.....++.+++.++.+++.||.++++..
T Consensus       227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~  274 (393)
T PRK11195        227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL  274 (393)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH
Confidence            788899888999999999999999999999999999999988777543

>TIGR00895 2A0115 benzoate transport

Probab=99.95  E-value=3.5e-26  Score=223.47  Aligned_cols=289  Identities=25%  Similarity=0.322  Sum_probs=214.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +++.+...++..+.............|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            45666666667777777778888889999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.+++. ..++++.+++.+++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.+..||++.
T Consensus        95 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  173 (398)
T TIGR00895        95 FTLLCA-LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL  173 (398)
T ss_pred             HHHHHH-HccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence            877664 5566788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHhhccCCCCCCCCCCCccchhhhhhhhh----hh---HHhh-hccC-CCCCHHHHhcC---HHH
Q 012159          272 FYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLS----AS---LEEM-GESL-KDVPWKAIFRS---KAV  338 (470)
Q Consensus       272 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~-~~~~-~~~~~~~~~~~---~~~  338 (470)
                      |++.+++.++.. +....++++++....+ ++++......+...    +.   ..+. .+.. ....++.++++   +..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (398)
T TIGR00895       174 FYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARIT  252 (398)
T ss_pred             hhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHH
Confidence            999876554443 3344444433211111 00000000000000    00   0000 0000 01112223322   334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      +.+.+..++..........+.|.+. +.+|+++.+.+.+.....++.++++++.+++.||+++|.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV  316 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            4445555566666777778888554 567999999999999999999999999999999999883

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=1.1e-25  Score=225.56  Aligned_cols=295  Identities=18%  Similarity=0.233  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhc--------CCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF--------GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ  183 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  183 (470)
                      ..+.++...++.+..+++...+++..|.+.+++        +.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            456667777788888888888888888888777        888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHH
Q 012159          184 TGVLIWSLATALLPLL-----------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (470)
Q Consensus       184 ~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  252 (470)
                      ++.++++++.++.++.           .+.++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            9999888877665431           12346788999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHhhh--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhh-----hhhhhHHh
Q 012159          253 VAGLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK-----SLSASLEE  319 (470)
Q Consensus       253 ~~g~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  319 (470)
                      ++++.+++.+.        +.+|||+.|++.+++.++..+..++++|+++....+.+.++......+     ......++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE  249 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence            99988776553        356899999998887777666666676654321111111100000000     00000000


Q ss_pred             hhccCC--CCCHHHHhcCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 012159          320 MGESLK--DVPWKAIFRSKAVWA---MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ  394 (470)
Q Consensus       320 ~~~~~~--~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~  394 (470)
                      ..+..+  ....+..+.-.....   .....+..........++.|.+.+ ..|++....++.....++..+++.++.++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~  328 (479)
T PRK10077        250 IKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-TLGASTDIALLQTIIVGVINLTFTVLAIM  328 (479)
T ss_pred             HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            000000  000001111000000   011111111222334556677766 46888877777778888899999999999


Q ss_pred             HHHHHHhcCCcch
Q 012159          395 FADNLIATGVETT  407 (470)
Q Consensus       395 l~dr~~~~~~~~~  407 (470)
                      ++||+++|+....
T Consensus       329 l~dr~g~r~~~i~  341 (479)
T PRK10077        329 TVDKFGRKPLQII  341 (479)
T ss_pred             HHHHhcChHHHHH
Confidence            9999998875543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=2.1e-25  Score=216.49  Aligned_cols=305  Identities=11%  Similarity=-0.021  Sum_probs=232.2

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHH-HHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSLATALLP  197 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~~~~~  197 (470)
                      +.+.++..++......+++|.+.+++|.+..++|++.+++.+...++++++|+++||+||+........+ ..+..+.+.
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777778888999999999999999999999999999999999999999999985433222111 111222222


Q ss_pred             HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHH
Q 012159          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (470)
Q Consensus       198 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  277 (470)
                      ...++++.+++.|+++|.+.+...|...++..++  +++|++.+|....+.++|.+++|++++.+.+++|||..|++.++
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~  166 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA  166 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            3456778999999999999888889988887654  47899999999999999999999999999999999999988766


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012159          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (470)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (470)
                      +.++..+ .+.++++.+++++.. + ++                 ..+...+++++|+|++|...+..++...+......
T Consensus       167 ~~~~~~~-~~~~~~~~~~~~~~~-~-~~-----------------~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~  226 (382)
T TIGR00902       167 GLAFMLI-GFLIKPTIPPKDAIP-E-DE-----------------SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYG  226 (382)
T ss_pred             HHHHHHH-HHHcCCCCCCCcccc-c-cc-----------------cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence            5333332 333333211111100 0 00                 00112357889999999999999998899999999


Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch------------------------------
Q 012159          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT------------------------------  407 (470)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~------------------------------  407 (470)
                      +.|.|+++ .|.++.+.|.+.....++.+++.++.+++.||++.|+.+..                              
T Consensus       227 ~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~  305 (382)
T TIGR00902       227 FSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCG  305 (382)
T ss_pred             HHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            99999986 79999999999999999999999999999999999886665                              


Q ss_pred             ------------------------HHHHH-HhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHH
Q 012159          408 ------------------------MGITN-TVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  448 (470)
Q Consensus       408 ------------------------~g~~~-~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  448 (470)
                                              .++++ ....++..+|+.++|++.|..+.  ..++..++..+
T Consensus       306 ~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~--~~~~~~~~~~~  369 (382)
T TIGR00902       306 TFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA--GTFVFMAIIAA  369 (382)
T ss_pred             HHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence                                    44444 34568899999999999998763  33444444333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.95  E-value=1.8e-25  Score=218.02  Aligned_cols=308  Identities=17%  Similarity=0.166  Sum_probs=227.9

Q ss_pred             HHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          120 SLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      ....++.........++++. +.+++|++..++|++.++..+...+.++++|+++||+|||+++..+.++.+++.+++. 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~-   94 (400)
T PRK11646         16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA-   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH-
Confidence            34455555555555666554 6788999999999999999999999999999999999999999999999988887774 


Q ss_pred             hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHH
Q 012159          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (470)
Q Consensus       199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  278 (470)
                      ..++++.+++.|++.|++.+...+...+++.+++|+++|++++|+.+....+|..+||++++++. .+||++.|++.+++
T Consensus        95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~  173 (400)
T PRK11646         95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL  173 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            45677889999999999998888999999999999999999999999999999999999999998 67999999998877


Q ss_pred             HHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012159          279 GIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (470)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (470)
                      .++..+.. +..+++++ + +   .+++                   ...++++++++|+++...+..+...........
T Consensus       174 ~~~~~i~~~~~~~~~~~-~-~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKL-S-T---VRTP-------------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVML  229 (400)
T ss_pred             HHHHHHHHHHhCCcccc-c-c---cchh-------------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            66554433 33332111 0 0   0000                   011356788888887766655554444444567


Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCcch-----------------------------
Q 012159          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETT-----------------------------  407 (470)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~-----------------------------  407 (470)
                      ++|.|+++..+ ++.+.+++.+...++...+....+++.|| ++.++....                             
T Consensus       230 ~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  308 (400)
T PRK11646        230 MLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY  308 (400)
T ss_pred             hhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            88999987644 67788888888777776666666666654 443332221                             


Q ss_pred             --------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCc---eehhhHHHHHHHHHHHHHH
Q 012159          408 --------------------------MGITNTVGAVPGIVGVALTGYLLDSTHS---WSMSLFAPSIFFYLTGTIV  454 (470)
Q Consensus       408 --------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~---~~~~~~~~~~~~~~~~~~~  454 (470)
                                                .|..+....++..+||.+.|++.|..+.   ....+.+..+..++.....
T Consensus       309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence                                      7888888999999999999999987532   3344444343333333333

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=5.2e-26  Score=218.87  Aligned_cols=247  Identities=17%  Similarity=0.224  Sum_probs=198.9

Q ss_pred             hhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 012159          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (470)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  208 (470)
                      ....+++.+|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++.  ..++.+.+++
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l~~   92 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALLFA   92 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999988877776555  3456678889


Q ss_pred             HHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc--CchHHHHHHHHHHHHHHHHH
Q 012159          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~~  286 (470)
                      .|++.|++.+...+....++.++++ ++|++++++++.+..+|..+++.+++.+.++.  +||+.|.+.+++.++...  
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--  169 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--  169 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence            9999999998888888888899886 68999999999999999999999999888765  399988877765443322  


Q ss_pred             HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (470)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (470)
                      .++++.+++++... +                     ......++.+|+|.+|...+..++....++....++|.|+++ 
T Consensus       170 ~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-  226 (355)
T TIGR00896       170 AWIPQVRRRVAANQ-T---------------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-  226 (355)
T ss_pred             HHhhhhccccCCCC-C---------------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            22332221111000 0                     001123567889999888777777777788888999999986 


Q ss_pred             hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      .|++..+.+.+.+...++.++++++.|++.||++.|+
T Consensus       227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~  263 (355)
T TIGR00896       227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR  263 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Confidence            6999999999999999999999999999999996554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=6.5e-25  Score=210.61  Aligned_cols=286  Identities=32%  Similarity=0.508  Sum_probs=248.8

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (470)
                      .+.+..+..........+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34556677778888888999999999999999999999999999999999999999999999999999999888887775


Q ss_pred             HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHH
Q 012159          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (470)
Q Consensus       198 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  277 (470)
                       ..++++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..++|.+++.+.+..+|++.+++.++
T Consensus        83 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          83 -FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             -HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             4467789999999999999999999999999999999999999999999999999999999999999899999999888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012159          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (470)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (470)
                      +.++..+...+++                                             |.++...+..++..........
T Consensus       162 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  196 (352)
T cd06174         162 LGLLLALLLLFLL---------------------------------------------RLLLLLALAFFLLSFGYYGLLT  196 (352)
T ss_pred             HHHHHHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhHHHHHHH
Confidence            8776665554443                                             4577777888888888899999


Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccch-----------------------------
Q 012159          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG-VETT-----------------------------  407 (470)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~-~~~~-----------------------------  407 (470)
                      +.|.+.++.+|.+..+.+.......++..++.++.+++.||+++|+ ....                             
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g  276 (352)
T cd06174         197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG  276 (352)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999877999999999999999999999999999999999998 5443                             


Q ss_pred             --------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHH
Q 012159          408 --------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  450 (470)
Q Consensus       408 --------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~  450 (470)
                                                .+..+....++..+++.+.|.+.+..+ +...+.+.++..++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~  344 (352)
T cd06174         277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLA  344 (352)
T ss_pred             HHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHH
Confidence                                      888888999999999999999988654 454555544444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10054 putative transporter; Provisional

Probab=99.95  E-value=1.6e-25  Score=218.07  Aligned_cols=295  Identities=12%  Similarity=0.120  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (470)
                      +..+.+..++.........+++|. +.+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.+
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            334555666667777777777665 6678999999999999999999999999999999999999999999888888776


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHH
Q 012159          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (470)
Q Consensus       195 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  274 (470)
                      +++ ..++++.+++++++.|.+.+...+...++..|..++++|++++++.+...++|.++||++++++.+ .+|+.+|++
T Consensus        89 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~  166 (395)
T PRK10054         89 AIP-LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL  166 (395)
T ss_pred             HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence            664 456667788888888888777888899999999999999999999999999999999999999875 699999999


Q ss_pred             HHHHHHHHHHHHH-hhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHH
Q 012159          275 FGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (470)
Q Consensus       275 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (470)
                      .+++.++..+... .+++++++++++   +++                    ....++.+++|.++...+..++..+...
T Consensus       167 ~~~~~~i~~i~~~~~~~~~~~~~~~~---~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~  223 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRSEKAIATE---TGS--------------------VWSPSVLLQDKALLWFTCSGFLASFVSG  223 (395)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccc---hhh--------------------hhhhhhhccCceehHHHHHHHHHHHHHH
Confidence            8887766544433 344433221100   000                    0112567889999888887777777766


Q ss_pred             HHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch------------------------
Q 012159          354 TCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT------------------------  407 (470)
Q Consensus       354 ~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~------------------------  407 (470)
                      ....+.+.|....  .+.+....+.+.....+.........|++.||.++|+....                        
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (395)
T PRK10054        224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGM  303 (395)
T ss_pred             HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence            6666777776533  34556667777777777777778888999999988775443                        


Q ss_pred             --------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCce
Q 012159          408 --------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSW  436 (470)
Q Consensus       408 --------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~  436 (470)
                                                      .+.. ..+.+|..+||.++|++.|..+..
T Consensus       304 ~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~  363 (395)
T PRK10054        304 SAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPW  363 (395)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH-HHHHHHHHHHHHHHHHHHHHcChh
Confidence                                            2222 245578899999999999987543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=5.9e-25  Score=219.35  Aligned_cols=317  Identities=14%  Similarity=0.149  Sum_probs=238.3

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-----cCcHH-HHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKV-LQTGVLIWS  190 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~~  190 (470)
                      ..+++..+..++........+|.+.++.|.+..++|.. +.....+ ++.+++|+++||+     |||+. +.++.++.+
T Consensus        15 ~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         15 AILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            34455566677777788888999999999999999997 4444444 6889999999999     99885 556666666


Q ss_pred             HHHHHHHHhh--hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-ccC
Q 012159          191 LATALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLG  267 (470)
Q Consensus       191 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g  267 (470)
                      ++...+++..  ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..|
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            6655554432  4567888899999999999999999999999999999999999999999999999999999998 579


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHH
Q 012159          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (470)
                      ||..|++.+++.++..+..+..+|+++..  +  ++++.   .+            ....+++++++++..|...+..++
T Consensus       173 Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~--~--~~~~~---~~------------~~~~~l~~~~~~~~~~~~ll~~~l  233 (491)
T PRK11010        173 WQGMYWLMAALLIPCIIATLLAPEPTDTI--P--VPKTL---EQ------------AVVAPLRDFFGRNNAWLILLLIVL  233 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccc--c--cccch---hh------------hHHHHHHHHHcCcCHHHHHHHHHH
Confidence            99999999988776666555555432211  0  00000   00            001135667777877777666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------
Q 012159          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI-LPPLASVLVTSIAAQFADNLIATGVETT-------------------  407 (470)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------  407 (470)
                      ..........+.+.|+.+.+|++..+.+.+.. ...++.+++.++.|+++||+++|+....                   
T Consensus       234 ~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~  313 (491)
T PRK11010        234 YKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD  313 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66666777778888887778999999999874 5568999999999999999998765432                   


Q ss_pred             ----------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHH
Q 012159          408 ----------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF  447 (470)
Q Consensus       408 ----------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  447 (470)
                                                              .+..+....++..+++.+.|++.|..| |...+.+..++.
T Consensus       314 ~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~  392 (491)
T PRK11010        314 KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAA  392 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHH
Confidence                                                    677778888888888889999999765 555555555444


Q ss_pred             HHHHHHHH
Q 012159          448 YLTGTIVW  455 (470)
Q Consensus       448 ~~~~~~~~  455 (470)
                      +......+
T Consensus       393 l~~l~~~~  400 (491)
T PRK11010        393 VPGLLLLL  400 (491)
T ss_pred             HHHHHHHH
Confidence            44433333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.95  E-value=6.7e-25  Score=197.68  Aligned_cols=307  Identities=22%  Similarity=0.262  Sum_probs=261.1

Q ss_pred             hhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012159          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (470)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (470)
                      -..+..++.++.+.+++|+|.+..|++.++..++..+.+++..++.+|+|.++.+..++++.+++..+-...  +.+.++
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~--~~~~L~  103 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG--GLPLLF  103 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cHHHHH
Confidence            456777888999999999999999999999999999999999999999999999999999999998776533  447889


Q ss_pred             HHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc-CchHHHHHHHHHHHHHHHHH
Q 012159          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~  286 (470)
                      .+..+.|.+.+......++++.+.|| ++-+..+|+|....++|.++++.+.-.+.++. |||....+.++++++.++.+
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 78999999999999999999999999998887 79999999999998887776


Q ss_pred             HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (470)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (470)
                      +.-..+++......                        +..+-..++|+|.-|.+.+...+.++.+|....|+|.++.|.
T Consensus       183 lPq~~r~~~~~~~~------------------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~  238 (395)
T COG2807         183 LPQALREQAASIAT------------------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR  238 (395)
T ss_pred             hhhccccccccccc------------------------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            65432211111100                        011124689999999999999999999999999999999975


Q ss_pred             hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---------------------------------------
Q 012159          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------------------------------------  407 (470)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------------------------------------  407 (470)
                       |+|+.++|.+.+...+..+...+..+.+.+|...++....                                       
T Consensus       239 -G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~la  317 (395)
T COG2807         239 -GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLA  317 (395)
T ss_pred             -CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHH
Confidence             9999999999999999999999999999998766665554                                       


Q ss_pred             -----------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhhccCCC
Q 012159          408 -----------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK  462 (470)
Q Consensus       408 -----------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (470)
                                       .|+.+.++++...+||++.|++.|.+++|...+.......+.....-+...+..+
T Consensus       318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~~~  389 (395)
T COG2807         318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRNRY  389 (395)
T ss_pred             HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence                             8899999999999999999999999999998888776666655555544444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=4.2e-25  Score=222.04  Aligned_cols=322  Identities=18%  Similarity=0.187  Sum_probs=229.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhc-----CCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-----GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~  185 (470)
                      ..++.+.++.++.+..+++...++...|.+..++     +.+..+.+++.+.+.++..++.+++|+++||+|||+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~   92 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            3456777778888889999999998888876542     34566789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHH
Q 012159          186 VLIWSLATALLPLLAG-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (470)
Q Consensus       186 ~~~~~~~~~~~~~~~~-----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (470)
                      .+++.++.++.+...+     +++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.++.
T Consensus        93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888877654322     25789999999999999999999999999999999999999999999999999998887


Q ss_pred             hhhc-----------------------ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc-chhhhhh----h
Q 012159          261 PIIE-----------------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS-NYINMKK----S  312 (470)
Q Consensus       261 ~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~  312 (470)
                      .+..                       ..+||+.|.+.++.+++..+..+++||+++....+.++++ ......+    .
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~  252 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK  252 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccc
Confidence            6532                       2479999988888777777777888888764221111111 0000000    0


Q ss_pred             hhhhHHh---h--hccCCCCCHHHHhcC---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHH----
Q 012159          313 LSASLEE---M--GESLKDVPWKAIFRS---KAVWA----MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW----  376 (470)
Q Consensus       313 ~~~~~~~---~--~~~~~~~~~~~~~~~---~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~----  376 (470)
                      ..+..++   .  +++....++++++++   ++.+.    ..+..++..+.+++...+.|.++++ .|++....+.    
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~  331 (502)
T TIGR00887       253 IEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYE  331 (502)
T ss_pred             cccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHH
Confidence            0000000   0  001111246666653   22211    1222333444556667778898874 6886543221    


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----------------------------------------
Q 012159          377 --------VSILPPLASVLVTSIAAQFADNLIATGVETT-----------------------------------------  407 (470)
Q Consensus       377 --------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----------------------------------------  407 (470)
                              ...+..++.+++.++.++++||+|||+....                                         
T Consensus       332 ~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (502)
T TIGR00887       332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNA  411 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Confidence                    2334445677788999999999999986554                                         


Q ss_pred             ------------------HHHHHHhhhhHHHHHHHHHHHhhccC
Q 012159          408 ------------------MGITNTVGAVPGIVGVALTGYLLDST  433 (470)
Q Consensus       408 ------------------~g~~~~~~~~~~~ig~~~~g~l~~~~  433 (470)
                                        .|+.+.++.++++++|.+.+.+.+..
T Consensus       412 ~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  455 (502)
T TIGR00887       412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG  455 (502)
T ss_pred             hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence                              77778888888999999998888743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=7.9e-27  Score=216.45  Aligned_cols=279  Identities=17%  Similarity=0.205  Sum_probs=225.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      .++.+.++++...++.++.+.+....+.+.+.+|+++...|++.+++.+.+.++++++|+++||++||+++.+|..++.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            45778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~  270 (470)
                      +.+..++. +.+|++.++|.+.|+|.+...|+.+++++|.+|.++|++++++++.+..+|..+|.+++..+.++.+ |||
T Consensus       111 Av~~~~fs-~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~  189 (493)
T KOG1330|consen  111 AVFASGFS-NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW  189 (493)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence            99888654 7789999999999999999999999999999999999999999999999999999999999998877 999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHH
Q 012159          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (470)
                      .|+..+++.+++.++.+++.++++....++.+.+...           .........+.+.+.+++.+....+.+....+
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f  258 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQF  258 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccchHHHHHHHHccCceeeehHHHHHHHH
Confidence            9999999988776665555444332222111111100           00011112234556666776666666666666


Q ss_pred             HHHHHHHHHHHHHHHH---hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          351 GHYTCLSWLPTYFSEE---LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      ....+..|.|.++...   .|++.....++..+..+++.+|.+++|.++||+.+.
T Consensus       259 v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~  313 (493)
T KOG1330|consen  259 VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRI  313 (493)
T ss_pred             hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHh
Confidence            6666666766665432   356666777788888899999999999999997663

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=3e-24  Score=209.25  Aligned_cols=299  Identities=14%  Similarity=0.061  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHH-HHHHhhhhhHHHhhhhcCcHHHH-HHHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATA  194 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~  194 (470)
                      ...+..++..+......+.+|. +.+++|.+..++|++.+...+ +..++.+++++ .||+|+|+.++ .+.++.+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            3344466666666667777666 678899999999999876655 55555555555 99999998754 44455455555


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccch--hhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHH
Q 012159          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (470)
Q Consensus       195 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  272 (470)
                      +.+ ..++++.+++.+.+.|...+...|...+++.++.++++|  +...++.+.+.++|.++||++++.+.+++|||+.|
T Consensus        98 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f  176 (393)
T PRK15011         98 LFA-WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY  176 (393)
T ss_pred             HHH-HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence            553 456666666555555555567788888888888776555  34557888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-hccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcC-HHHHHHHHHHHHHHH
Q 012159          273 YIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS-KAVWAMIYAHFCGSW  350 (470)
Q Consensus       273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  350 (470)
                      ++.+++.++..+..+. +++.++.++. . +.+.                        +...++ +..+...+..++...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~  230 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKELPL-A-TGTL------------------------EAPRRNRRDTLLLFVICTLMWG  230 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCCCcc-c-cccc------------------------cccccccccHHHHHHHHHHHHH
Confidence            9988877666554443 4443221111 0 0000                        000011 222333333344445


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----------------------
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-----------------------  407 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----------------------  407 (470)
                      .......+.|.|+++.+|+++.+.+.+.....++.+++.++.|+++||+++|+....                       
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  310 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLG  310 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            555566789999988899999999988888888889999999999999999875443                       


Q ss_pred             -------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHH
Q 012159          408 -------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSI  445 (470)
Q Consensus       408 -------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  445 (470)
                                                     .+.++....+|..+++.+.|++.+..+ +...+.+..+
T Consensus       311 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~  378 (393)
T PRK15011        311 LQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALV  378 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHH
Confidence                                           455556677888899999999888654 4444444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=9.2e-25  Score=199.88  Aligned_cols=307  Identities=18%  Similarity=0.141  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      ..+..+...+++.++......+.+|.+.+.++++..+.+++...+..++.+.+++.|++.+|+|+|+.+++++.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34445555666777777788888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH--hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc------
Q 012159          194 ALLPL--LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN------  265 (470)
Q Consensus       194 ~~~~~--~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------  265 (470)
                      .++.-  ...++..+++..++.|.|.+...++.+.++....++++..+.+++.+.+.++|.++||++++.++.+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            88742  3456678889999999999999999999999999999999999999999999999999999998873      


Q ss_pred             -------------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHH
Q 012159          266 -------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAI  332 (470)
Q Consensus       266 -------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (470)
                                   -.|+++|.+.+...++..+.....+.++.+.......+.                    ++....++
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~--------------------~~~~~~~l  232 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS--------------------GSAGLSSL  232 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc--------------------ccchHHHH
Confidence                         137788888777766665555544432222111110000                    01134789


Q ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----
Q 012159          333 FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-----  407 (470)
Q Consensus       333 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----  407 (470)
                      +++|+++...++.+++...+.....+++.|+.+..|.+..+++...+.+.++.++|++++.++..|+...+.+..     
T Consensus       233 ~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~  312 (422)
T COG0738         233 FQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIA  312 (422)
T ss_pred             HhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            999999999999999999999999999999998789999999999999999999999999999999998877665     


Q ss_pred             -----------------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhh
Q 012159          408 -----------------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL  440 (470)
Q Consensus       408 -----------------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~  440 (470)
                                                                     .+.....+.+|+++.|++.|++.|..+.....+
T Consensus       313 ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         313 ILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence                                                           445556778899999999999999987554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.94  E-value=1.9e-24  Score=209.99  Aligned_cols=259  Identities=14%  Similarity=0.050  Sum_probs=199.2

Q ss_pred             HHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCc----HHHHHHHHHHHHHHHHHHH
Q 012159          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR----KVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~  198 (470)
                      ++........+.+++|.+.+++|.+..++|++.+++.++..++++++|+++||+|||    +.+.+...+.   .+....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~~~~~~   89 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---AVAFWF   89 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---HHHHHH
Confidence            444445567888889998899999999999999999999999999999999999984    3333222221   122223


Q ss_pred             hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHH
Q 012159          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (470)
Q Consensus       199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  278 (470)
                      ..++++.+++.|++.|++.+...|...++..++  .++|+++++....+.++|.++||++++++.+++|||..|++.++.
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~  167 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG  167 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            456678888999999999888899888888876  367889999999999999999999999999999999999987765


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          279 GIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (470)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (470)
                      .++..+.....++++++.++    +++                .+....++++++|+|.+|...+..++..........+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~----~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  227 (382)
T PRK11128        168 VASMLLGQLLRPTIMPQGES----RQQ----------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGF  227 (382)
T ss_pred             HHHHHHHHHccCCCCCcccc----ccc----------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence            54444333332222111000    000                0001235688999999999888888877777778888


Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       359 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      .|.|+++ .|++..+.|.+.....++.++..++.+++.||+++++.+..
T Consensus       228 ~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~  275 (382)
T PRK11128        228 SAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLL  275 (382)
T ss_pred             HHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            8999975 79999999999999999999999999999999999887554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3e-25  Score=218.71  Aligned_cols=345  Identities=18%  Similarity=0.238  Sum_probs=273.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      -|.++...++..+........++.+.+.+.++++.+..+++|+.++......+..++.+.+.||+|.|.+.+++.++.++
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence            45666666677777666677777888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      +.++.++..+.+..++...++.|+|.+..+.....++..+|+ ++|+.+.|+...+.++|.++-|.+..++.+.+|||+.
T Consensus       124 g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~  202 (509)
T KOG2504|consen  124 GLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA  202 (509)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence            998886655554556666799999999999999999998887 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCC--------------------CCCccchhhhhh---hhhhhHHhhhc-----c
Q 012159          272 FYIFGLLGIAWFSGFKILQEGETSNGAT--------------------LAPRSNYINMKK---SLSASLEEMGE-----S  323 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~---~~~~~~~~~~~-----~  323 (470)
                      +++.+.+.+-.++.....++......+.                    .....+.....+   ......++..+     .
T Consensus       203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (509)
T KOG2504|consen  203 LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSP  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccc
Confidence            9999998866666655555422221000                    000000000000   00000000000     1


Q ss_pred             CCCCCH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          324 LKDVPW---KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (470)
Q Consensus       324 ~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~  400 (470)
                      .+....   .+++++|.++.+.+...+...++.....++|.|.. ..|++..+++.+.++.++..++++++.|++.|+..
T Consensus       283 ~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~  361 (509)
T KOG2504|consen  283 LQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG  361 (509)
T ss_pred             hhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence            111111   58899999999999999999999999999999998 57999999999999999999999999999999988


Q ss_pred             hcCCcch---------------------------------------------------------HHHHHHhhhhHHHHHH
Q 012159          401 ATGVETT---------------------------------------------------------MGITNTVGAVPGIVGV  423 (470)
Q Consensus       401 ~~~~~~~---------------------------------------------------------~g~~~~~~~~~~~ig~  423 (470)
                      .++....                                                         .|+...+..++.++||
T Consensus       362 ~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp  441 (509)
T KOG2504|consen  362 IRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP  441 (509)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence            5443332                                                         9999999999999999


Q ss_pred             HHHHHhhccCCceehhhHHHHHHHHHHHHHHHhhc
Q 012159          424 ALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAF  458 (470)
Q Consensus       424 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (470)
                      ++.|++.|.++.|...++..+...++.+...+...
T Consensus       442 Piag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  442 PIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999888888777766665554444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=2.4e-24  Score=210.77  Aligned_cols=267  Identities=14%  Similarity=0.054  Sum_probs=204.1

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-----cCcH-HHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRK-VLQTGVLIWSLA  192 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~  192 (470)
                      +...++.+++........+|.+.++.|++.+++|++..+...  .+..+++|+++||+     |||| ++.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            345567777888888889999999999999999999776665  58999999999999     7775 677777777766


Q ss_pred             HHHHHHhh--hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc-cCch
Q 012159          193 TALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWE  269 (470)
Q Consensus       193 ~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~  269 (470)
                      ..++++..  .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            66654432  34567777777888888889999999999999999999999999999999999999999999885 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (470)
                      ..|++.+++.++..+..+..+|+++.++++    ++..   +   +         ....+++++++|.++..++..++..
T Consensus       162 ~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~----~~~~---~---~---------~~~~~~~l~~~~~~~~~l~~~~l~~  222 (402)
T PRK11902        162 NTYLLMAGLMLAGALTTLWAPEPEVPARPP----RSLG---E---A---------VVGPLRDFFSRRGAWALLLLIVLYK  222 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccc----chhH---H---H---------HHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            999998887766555555555443221110    0000   0   0         0113567899999888777766666


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      ........+.+.++.+.+|+++.+.+++....+ ++.+++.++.+++.||+++|+...
T Consensus       223 ~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~  280 (402)
T PRK11902        223 LGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM  280 (402)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            655444455566677778999999998876655 468999999999999999877544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.94  E-value=4.4e-26  Score=232.43  Aligned_cols=286  Identities=17%  Similarity=0.174  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (470)
                      ..+++..+...+........++.+.++|+++..+.|++.+.+.++++++.++.|++.||+|||+++.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44555666777777888888999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHhh-------------------------------------------------h-HHHHHHHHHHHHHhhccCchhhHHH
Q 012159          197 PLLA-------------------------------------------------G-FMPGLVLSRVLVGIGEGVSPSAATD  226 (470)
Q Consensus       197 ~~~~-------------------------------------------------~-~~~~l~~~~~l~G~~~~~~~~~~~~  226 (470)
                      ++..                                                 + .+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            5431                                                 0 2456789999999999999999999


Q ss_pred             HhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc----------------------CchHHHHHHHHHHHHHHH
Q 012159          227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL----------------------GWESVFYIFGLLGIAWFS  284 (470)
Q Consensus       227 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------g~~~~~~~~~~~~~~~~~  284 (470)
                      ++.|++|+++|++++++++.+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987643                      267778888888777666


Q ss_pred             HHHhhccCCCCCCCCCC-CccchhhhhhhhhhhHHhhhc--cCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          285 GFKILQEGETSNGATLA-PRSNYINMKKSLSASLEEMGE--SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT  361 (470)
Q Consensus       285 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  361 (470)
                      .+++++++.+......+ +..+.....+.......+...  ......++.+++||.++...+..++.....+++.+++|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666655432211100 000000000000000000000  000123568999999999999999999999999999999


Q ss_pred             HHHHHhCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 012159          362 YFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       362 ~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~  402 (470)
                      |+++.+|+++.+++++.....+ +.+++.+++|+++||++.+
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            9999999999999999888776 5789999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.94  E-value=2e-24  Score=210.68  Aligned_cols=262  Identities=19%  Similarity=0.206  Sum_probs=197.3

Q ss_pred             HHHHhhhhhHHHhHHhhhhhcC--CCchhhHHHHHH-----HHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH
Q 012159          124 VICNMDKVNLSVAIIPMSHRFG--WNSSVAGLVQSS-----FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (470)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~~-----~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (470)
                      +...++...++...+.+.+++.  .+..+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777666654  445555554443     333334688999999999999999999999998888777


Q ss_pred             HHhhhHHH--------HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh-----
Q 012159          197 PLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-----  263 (470)
Q Consensus       197 ~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----  263 (470)
                      +.. +++.        .+++.|+++|++.+...+...+++.|++++++|++..++.+.+..+|.+++++++..+.     
T Consensus        83 ~~~-~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        83 GLL-PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             hhC-CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            543 3322        57889999999999999999999999999999999999999999999999998877654     


Q ss_pred             ---cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHH--H
Q 012159          264 ---ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA--V  338 (470)
Q Consensus       264 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  338 (470)
                         +.++||+.|++.+++.++........+|+++.+..+.                    +++....++++.+++++  +
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  221 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------KHKKKRGPIRETLTKHRKPF  221 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------ccccccCCHHHHHHhchHHH
Confidence               3578999999877766555444434443322111000                    00111234566666655  7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      +...+..++.....+....++|.|+++.+|.++.+.+.......++..++.++.|++.||+++|+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  289 (394)
T TIGR00883       222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            77777777777777888899999998888999999999999999999999999999999999988554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00898 2A0119 cation transport protein

Probab=99.94  E-value=1.5e-24  Score=218.84  Aligned_cols=285  Identities=19%  Similarity=0.164  Sum_probs=214.1

Q ss_pred             HhHHhhhhhcCCC---chhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012159          135 VAIIPMSHRFGWN---SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (470)
Q Consensus       135 ~~~~~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (470)
                      ...+.+.++++++   ..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.++.+ ..++++.+++.|+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~  188 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRL  188 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence            4667899999999   89999999999999999999999999999999999999998888887774 5677799999999


Q ss_pred             HHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhcc
Q 012159          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (470)
                      +.|++.+...+...+++.|++|+++|+++.++...+..+|.+++|.+++.+.+   ||+.|++.++..++..+..++++|
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999998877653   999999999888777777777777


Q ss_pred             CCCCCCCCCCCccchhhhhhh-----------h-hhh-HHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          292 GETSNGATLAPRSNYINMKKS-----------L-SAS-LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (470)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~-----------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (470)
                      +++....+.+.++.....++.           . ... .++..+..+..++++++++|.++...+..++..+........
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG  345 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            654321111111100000000           0 000 001111122356789999999888777666555554444333


Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------------------
Q 012159          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------------------------  407 (470)
Q Consensus       359 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------------------  407 (470)
                      ++.+.. .++.+..   ......++..+++.++.+++.||+|+|+.+..                               
T Consensus       346 ~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  421 (505)
T TIGR00898       346 LVLDLG-NLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK  421 (505)
T ss_pred             Hhcccc-ccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            444443 3454432   34455677888899999999999999876554                               


Q ss_pred             --------------------------HHHHHHhhhhHHHHHHHHHH
Q 012159          408 --------------------------MGITNTVGAVPGIVGVALTG  427 (470)
Q Consensus       408 --------------------------~g~~~~~~~~~~~ig~~~~g  427 (470)
                                                +|+.+..+.+|++++|.+.+
T Consensus       422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence                                      78888889999999999988

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.93  E-value=5.9e-24  Score=209.26  Aligned_cols=324  Identities=12%  Similarity=0.036  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (470)
                      .+.+.+++..+......+++|. +.+++|+++.++|++.+++.++..++++++|+++||+|||++++++..+.+++....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3344555555555666667666 555699999999999999999999999999999999999999988766655443322


Q ss_pred             HHh--h-----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCch
Q 012159          197 PLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       197 ~~~--~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                      ...  .     ..+...++.+++.|.+.....+....+..+ . .++++..+|......++|..++|++++.+.+. +|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~  170 (420)
T PRK09528         94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-Cch
Confidence            111  1     111112333444444444444444444332 2 24677888999999999999999999998764 899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (470)
                      +.|++.+++.++..+..+..+++++++....+++++              .++..+....+..+|+|.+|.+.+..++..
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~  236 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA--------------NASAVSLKDALALLKLPKFWFLVLYVIGVA  236 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccccchhhhccchhc--------------ccccccHHHHHHHccCCCeEeehHHHHHHH
Confidence            999998887776665555554433221110000000              000001112356788888877666555555


Q ss_pred             HHHHHHHHHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------
Q 012159          350 WGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------------  407 (470)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------  407 (470)
                      ........+.|.|+.+.+   +.+..+.+.+.++..++..++.++.|++.||+++|+....                   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~  316 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPL  316 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence            555556667788776543   4566778888999999999999999999999999987654                   


Q ss_pred             ------------------------------------HHH-HHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHH
Q 012159          408 ------------------------------------MGI-TNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  450 (470)
Q Consensus       408 ------------------------------------~g~-~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~  450 (470)
                                                          .+. .+....+|.++++.+.|++.|..+ +...+...+++.++.
T Consensus       317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~  395 (420)
T PRK09528        317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLF  395 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHH
Confidence                                                111 345567899999999999999876 666666655555444


Q ss_pred             HHHHHhhcc
Q 012159          451 GTIVWLAFA  459 (470)
Q Consensus       451 ~~~~~~~~~  459 (470)
                      ....+...+
T Consensus       396 ~~~~~~~~~  404 (420)
T PRK09528        396 TLISVFTLS  404 (420)
T ss_pred             HHHHHHHhc
Confidence            444443333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.93  E-value=1.3e-23  Score=208.19  Aligned_cols=318  Identities=18%  Similarity=0.159  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      +.+..++++.+++.++..+.....+.+..+..-|+..++++.++..+...+.++++|.++||++||++++.+-++.++..
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA   89 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            44455667778888888888888888877888899999999999999999999999999999999999999987776655


Q ss_pred             HHHHHhh----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCch
Q 012159          194 ALLPLLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       194 ~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                      ++++...    .+.+.+++..++.|++.+...|+.++++.+..|+++...+.++.+...+++.++||.++|.+...+|-.
T Consensus        90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~  169 (524)
T PF05977_consen   90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA  169 (524)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4443321    346788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (470)
                      ++|++.++..++.+......+++.++++.   +++...   +       +     -...++.+.++|.+....+..++.+
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~---~~e~~~---~-------~-----l~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPPPSSL---PRERFF---S-------A-----LREGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccccc---chhhhh---h-------h-----HHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999887766655554444432221111   111100   0       0     0113456667787777766666666


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------
Q 012159          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT----------------------  407 (470)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------------  407 (470)
                      +....+...+|.+.++.+|.++...|++.+..++++++|.++.+++.+|+++++....                      
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~  311 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLAL  311 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHH
Confidence            6666777889999999999999999999999999999999999999999887766553                      


Q ss_pred             ---------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHH
Q 012159          408 ---------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  450 (470)
Q Consensus       408 ---------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~  450 (470)
                                                       ++++.++...+..+|.++.|.+.+..+... .+.+.++..++.
T Consensus       312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~-al~~a~~~lll~  386 (524)
T PF05977_consen  312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRT-ALLIAGAALLLS  386 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHH
Confidence                                             778888888899999999999999877544 333433333333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.93  E-value=3.4e-23  Score=202.32  Aligned_cols=317  Identities=12%  Similarity=0.043  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (470)
                      ++.+....++.+.....+.+++|. +.+++|.+..+.|++.+++.++..++++++|+++||+|||+.++.+....+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            445555667777777778888777 4567899999999999999999999999999999999999999887666554433


Q ss_pred             HHHH--h-----hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC
Q 012159          195 LLPL--L-----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (470)
Q Consensus       195 ~~~~--~-----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (470)
                      ....  .     .+.+..+++.+++.|++.+...+....+..+..  ++++..+|......++|.++||++++.+.+ .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC
Confidence            2211  1     122334566788889988888888888877753  334567788888899999999999998865 59


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHH
Q 012159          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (470)
                      |+..|++.+++.++..+..+...++++++++.. +..+             ..+++.+..++++++|||.+|...+..++
T Consensus       161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  226 (396)
T TIGR00882       161 PQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-NALG-------------ANASAFSLKLALELFRQRKFWMFVLYVVG  226 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-cccc-------------cccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence            999999988887766555544443322111100 0000             00001111235788899998887777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----------------
Q 012159          348 GSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-----------------  407 (470)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-----------------  407 (470)
                      ....+.....+.+.|+++.+   +.+....+.+.+...+...++.+..+++.||+++|+....                 
T Consensus       227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~  306 (396)
T TIGR00882       227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT  306 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC
Confidence            66666666677888888765   4556677888888889999999999999999999987654                 


Q ss_pred             --------------------------------------HHH-HHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHH
Q 012159          408 --------------------------------------MGI-TNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  448 (470)
Q Consensus       408 --------------------------------------~g~-~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  448 (470)
                                                            .+. .+....+++++++.+.|++.|..+ +...+.+.+++.+
T Consensus       307 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~  385 (396)
T TIGR00882       307 ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVL  385 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHH
Confidence                                                  122 455677889999999999998765 5555555444444


Q ss_pred             HH
Q 012159          449 LT  450 (470)
Q Consensus       449 ~~  450 (470)
                      +.
T Consensus       386 i~  387 (396)
T TIGR00882       386 LF  387 (396)
T ss_pred             HH
Confidence            33

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.93  E-value=1.7e-23  Score=230.66  Aligned_cols=273  Identities=16%  Similarity=0.096  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHH-hhhhhcCCC-chhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHH--HHHHHH
Q 012159          115 LIGTTSLAFVICNMDKVNLSVAII-PMSHRFGWN-SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT--GVLIWS  190 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~--~~~~~~  190 (470)
                      ++...++..+...+....+..... .+..+.+.+ ....++..+++.++++++++++|+++||+|||+++..  ...+..
T Consensus        16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~   95 (1140)
T PRK06814         16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI   95 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence            333334444443443333333332 343444333 2457888999999999999999999999999997643  222222


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      ....+.++..++++.++++|+++|++.+...|+..+++.+++++++|++++|+.+++.++|.++||+++|++.+..+|++
T Consensus        96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~  175 (1140)
T PRK06814         96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI  175 (1140)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            22223333446789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHH
Q 012159          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (470)
                      .|+..+++.++.+++.+.++++++....... .....   +.    .        ...++.+.+++.+|...+..++.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~  239 (1140)
T PRK06814        176 LVALLMGIAVLGWLASLFIPKTGNAAPDLKI-DRNII---RS----T--------ITLLKYAKADKRIWLAILGISWFWL  239 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCCCCCee-ccchH---HH----H--------HHHHHHHhcCchHHHHHHHHHHHHH
Confidence            9955555555555555555554332111110 00000   00    0        0135678899999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      ....+..++|.|+++.+|.++...|++.+...++.+++.++.|++.++..+++
T Consensus       240 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~  292 (1140)
T PRK06814        240 VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL  292 (1140)
T ss_pred             HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee
Confidence            88888899999999999999999999999999999999999999997765443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.2e-25  Score=198.34  Aligned_cols=292  Identities=15%  Similarity=0.146  Sum_probs=242.2

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCc
Q 012159          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (470)
Q Consensus       141 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  220 (470)
                      ..+.+-+..++|++++...+...+.+++.|.+.||+|+|..+++|+.++...+++++ +.++++.+++.|.++|+|.+..
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-fg~sy~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-FGNSYPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHhhhhHHHH
Confidence            345567888999999999999999999999999999999999999999999998885 6777899999999999999999


Q ss_pred             hhhHHHHhhhccCcc-chhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 012159          221 PSAATDLIARSIPLE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT  299 (470)
Q Consensus       221 ~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (470)
                      .+...++++|.+|++ +|++++|+.-.+.++|-.+||++||.+++..|.+.+|++.++++++-..+.+++.++.+.+...
T Consensus       177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~  256 (464)
T KOG3764|consen  177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS  256 (464)
T ss_pred             HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccc
Confidence            999999999999876 4799999999999999999999999999999999999999999988877777766554333211


Q ss_pred             CCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 012159          300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI  379 (470)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  379 (470)
                                             ..+..++.+++++|.++.........+.........++.+..+.+..+..+.|+.+.
T Consensus       257 -----------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fL  313 (464)
T KOG3764|consen  257 -----------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFL  313 (464)
T ss_pred             -----------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeec
Confidence                                   111345789999999999988888888888888899999999988866668999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------------------------------------
Q 012159          380 LPPLASVLVTSIAAQFADNLIATGVETT----------------------------------------------------  407 (470)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------------------------------------------  407 (470)
                      ...+...++..+.|.+.||++..+.+..                                                    
T Consensus       314 p~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~r  393 (464)
T KOG3764|consen  314 PASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPR  393 (464)
T ss_pred             ccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchh
Confidence            9999999999999999999995443332                                                    


Q ss_pred             -----------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhh
Q 012159          408 -----------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  457 (470)
Q Consensus       408 -----------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (470)
                                 .++......++.++||.++|.+.+..|.-+ ...+.++..+.-+.++.+.
T Consensus       394 h~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~w-l~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  394 HVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEW-LMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             hccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHH-HHHHHHHHHHHHHHHHHHH
Confidence                       566667777888889999998888776433 3333344444444444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=1.5e-22  Score=194.99  Aligned_cols=253  Identities=14%  Similarity=0.095  Sum_probs=192.0

Q ss_pred             hhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-----cCcHHH-HHHHHHHHHHHHHHHHhh--hH
Q 012159          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKVL-QTGVLIWSLATALLPLLA--GF  202 (470)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~~~--~~  202 (470)
                      ...++..|.+.+++|++.+++|+..+. .+...+ .+++|+++||+     ||||.+ +.+.++.++....+++..  .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456677899999999999999999765 555554 89999999998     898874 556666666655554332  34


Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC--------chHHHHH
Q 012159          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--------WESVFYI  274 (470)
Q Consensus       203 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------~~~~~~~  274 (470)
                      .+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.++.|        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            45667777788888888899999999999999999999999999999999999999999998888        9999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHH---HHHHHHHHHHHHHH
Q 012159          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA---VWAMIYAHFCGSWG  351 (470)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~  351 (470)
                      .+++.++..+..++..+++.+.+..  ++++    .+   +         ....+++++++|.   ++...+..++...+
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~--~~~~----~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASV--PKPL----TQ---A---------VLKPIREFFQRKNMIQALLLLLLIVLYKLG  224 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCccccc--chhH----HH---H---------HHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            8887766555544433222111100  0000    00   0         0112456666664   77777777777888


Q ss_pred             HHHHHHHHHHHHHHHhCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 012159          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGV  404 (470)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~  404 (470)
                      .+....+.|.|+++ +|+++.+.+.+....+ ++.+++.+++|++.||+++|+.
T Consensus       225 ~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~  277 (356)
T TIGR00901       225 DSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA  277 (356)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            88889999999987 8999999998887666 5788999999999999998874

>TIGR00889 2A0110 nucleoside transporter

Probab=99.92  E-value=2.4e-22  Score=196.87  Aligned_cols=321  Identities=11%  Similarity=0.050  Sum_probs=223.9

Q ss_pred             HHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcC-cHHHHHHHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATALL  196 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~  196 (470)
                      +++.+++.+.......+.++. +.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++.++...+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            445566666666666555444 667899999999999999999999999999999999965 777777777776666555


Q ss_pred             HHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhc--------cCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc
Q 012159          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS--------IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (470)
Q Consensus       197 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  268 (470)
                      . ..++++.+++.+++.|++.+...+...++....        .....|.+.+|      .+|.++||.+++.+....+|
T Consensus        87 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~  159 (418)
T TIGR00889        87 A-QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN  159 (418)
T ss_pred             H-HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence            4 456668888899999998877777666654322        22223444443      47889999999887332234


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHH
Q 012159          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (470)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (470)
                      . +|++.+++.++..+..+.++|+++.++++   +....           +    ......+.++|+|.++.+.+..++.
T Consensus       160 ~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~-----------~----~~~~~~~~~~k~~~~~~~~~~~~~~  220 (418)
T TIGR00889       160 I-QLYITAGSSALLGVFALTLPDIPVAKSTA---KMSIK-----------V----MLGLDAFILFKNKRMAIFFFFSMLL  220 (418)
T ss_pred             H-HHHHHHHHHHHHHHHHhcCCCCCCCcccc---ccCHH-----------H----HhhhhHHHHhcCCCeeeHHHHHHHH
Confidence            4 46666666555555555555442211110   00000           0    0011235678899988888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------
Q 012159          349 SWGHYTCLSWLPTYFSEELSLNL--------TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------  407 (470)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------  407 (470)
                      .........+.+.|+++ .|.++        ...+...++..+..+++.++.|++.||+++|+.+..             
T Consensus       221 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~  299 (418)
T TIGR00889       221 GAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA  299 (418)
T ss_pred             HhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            77666677888888875 46443        566888999999999999999999999999866543             


Q ss_pred             ----------------------------------------------HHHHH-HhhhhHHHHHHHHHHHhhccCCc-----
Q 012159          408 ----------------------------------------------MGITN-TVGAVPGIVGVALTGYLLDSTHS-----  435 (470)
Q Consensus       408 ----------------------------------------------~g~~~-~~~~~~~~ig~~~~g~l~~~~~~-----  435 (470)
                                                                    .|+.+ ....++.++||.+.|++.+..+.     
T Consensus       300 ~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~  379 (418)
T TIGR00889       300 YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD  379 (418)
T ss_pred             HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc
Confidence                                                          66665 45678999999999999998643     


Q ss_pred             eehhhHHHHHHHHHHHHHHHhhccCCCCCCC
Q 012159          436 WSMSLFAPSIFFYLTGTIVWLAFASSKPQNF  466 (470)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (470)
                      |...+.+.+++.++.+...+...++..++-.
T Consensus       380 ~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~  410 (418)
T TIGR00889       380 WQTMWLFFAGYIAILAVLFMIFFKYSHNAIK  410 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            6667777766667777777777777666643

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=3.6e-22  Score=220.99  Aligned_cols=273  Identities=16%  Similarity=0.135  Sum_probs=198.6

Q ss_pred             HHHHHHH-hhhhhHHHhHHhhhhhcCCCc--hhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH
Q 012159          121 LAFVICN-MDKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       121 ~~~~~~~-~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (470)
                      +..++.. .+........+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.++..++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~   95 (1146)
T PRK08633         16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIV   95 (1146)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            3444433 333344444555656666544  4478999999999999999999999999999999988766555544332


Q ss_pred             --HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc--------c-
Q 012159          198 --LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------L-  266 (470)
Q Consensus       198 --~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~-  266 (470)
                        ...++++.++++|++.|++.+...++..+++.+++++++|++++|+...+..+|.++|+++++++.+.        + 
T Consensus        96 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~  175 (1146)
T PRK08633         96 LAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL  175 (1146)
T ss_pred             HHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence              23456789999999999999999999999999999999999999999999999999999999999876        2 


Q ss_pred             CchHHHHHHHHHH-HHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHH
Q 012159          267 GWESVFYIFGLLG-IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (470)
Q Consensus       267 g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (470)
                      +|.+.+.+.++.. ++.++..+.+++.++...... +......        ..+     ....++.+++++.++...+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~-----~~~~~~~l~~~~~~~~~~~~~  241 (1146)
T PRK08633        176 GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-DKKKYLF--------PKL-----LWRNLKLLRSDRVLWLAIIGL  241 (1146)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-ccccccc--------HHH-----HHHHHHHHhcCcHHHHHHHHH
Confidence            3444444433333 333333444444332211110 0000000        000     011346778889888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          346 FCGSWGHYTCLSWLPTYFSEELSLNLT-EAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      ++..........++|.|+++.+|++.. ..+++.+...++.+++.++.+++.||+++++....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~  304 (1146)
T PRK08633        242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPL  304 (1146)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhH
Confidence            777777778888999999998999998 99999999999999999999999999988765543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.91  E-value=1.2e-21  Score=190.88  Aligned_cols=268  Identities=10%  Similarity=0.017  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHH--HHHHHHHHHHhhhhhHH-HhhhhcCcHHHHHHHHHH-HH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLV--QSSFFWGYALSQLPGGW-LAKIFGGRKVLQTGVLIW-SL  191 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~--~~~~~~~~~~~~~~~g~-l~dr~g~r~~~~~~~~~~-~~  191 (470)
                      +..++..++.+++......+.+|.+.++.|.+..++|++  .++..+...+.+++++. ..||+||||..++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            456667788888988999999999999999999999997  46667888788888844 789999999876554332 21


Q ss_pred             HHHHHHHh--h-hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc
Q 012159          192 ATALLPLL--A-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (470)
Q Consensus       192 ~~~~~~~~--~-~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  268 (470)
                      ....++..  . .....++...++.+++.+...+...++..+..++++++...+....+..+|.++|+.+.+++.+++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            22222211  1 21233445556666777788888888989998888889888889888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHH
Q 012159          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (470)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (470)
                      |..|++.+++.++..+..++++++++++++.   +.+                   +..++++.+|+|.++...+..++.
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~~~~~~~l~~~~~~~~~~~~~l~  220 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA---PLA-------------------RRASLFRFFRRPLAWSLLALALLS  220 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc---chh-------------------hHHHHHHHHcCcCHHHHHHHHHHH
Confidence            9999999988776666555554433211100   000                   011356788999988888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCcc
Q 012159          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      ..+......+.+.|+++ .|+++++.|++.....+ ..+++.++.|++.||+++++...
T Consensus       221 ~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~  278 (390)
T TIGR02718       221 AMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI  278 (390)
T ss_pred             HHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            88888888899999987 69999999998888765 66677899999999999886544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.89  E-value=3.4e-20  Score=184.31  Aligned_cols=288  Identities=13%  Similarity=0.097  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhh-hh--cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMS-HR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW  189 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  189 (470)
                      +.+..+++..++..+..+...+.+|.+. ++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            3445555666676777777777777754 44  89999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccc---hhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE---RSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      +++.++++ ..++.+.+++.+++.|++.|...+...+++++++|+++   |++++++++.+.++|.++||++++++.+++
T Consensus        90 ~~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~  168 (475)
T TIGR00924        90 MLGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY  168 (475)
T ss_pred             HHHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99887775 44555778889999999999999999999999998754   888999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC---CCccchhhhhhh---------------hhhhHH----------
Q 012159          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATL---APRSNYINMKKS---------------LSASLE----------  318 (470)
Q Consensus       267 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------~~~~~~----------  318 (470)
                      ||++.|++.++..++..+.++..++..++.+.+.   .++++.......               ..+...          
T Consensus       169 g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (475)
T TIGR00924       169 GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTL  248 (475)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999988665555444444332221111100   000000000000               000000          


Q ss_pred             ------hhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh----hHHHHHHHHHHHHHH
Q 012159          319 ------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSILPPLASVLV  388 (470)
Q Consensus       319 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~~~  388 (470)
                            ......+.....+..|...+..+.+...+++..+....+.++.+.++..+.+...    .+++.++..+..++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~  328 (475)
T TIGR00924       249 AVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVG  328 (475)
T ss_pred             HHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHH
Confidence                  0000000111111122234555566666677777777788888887654443222    567788888888877


Q ss_pred             HHHHHHHHHHHHhc
Q 012159          389 TSIAAQFADNLIAT  402 (470)
Q Consensus       389 ~~~~g~l~dr~~~~  402 (470)
                      ..+..++..|+.+|
T Consensus       329 ~p~~~~~~~~l~~~  342 (475)
T TIGR00924       329 SPVLAMIWTRLGRK  342 (475)
T ss_pred             HHHHHHHHHHHHhC
Confidence            77766655555553

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.89  E-value=3.4e-20  Score=184.32  Aligned_cols=287  Identities=13%  Similarity=0.148  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhH-HhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAI-IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSL  191 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~  191 (470)
                      +-++.+++..+...+..+.....+ .++.+++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.+++++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            444555555566666666555554 44678899999999999999998888999999999999 9999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCcc--chhhHHHHHHhhhhhHHHHHHhhHHhhhcccCch
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                      +.+++++..+....+++.|+++|+|.|...|...+++.|.+|++  +|++++++++.+.++|.++||.+++++.+++|||
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            99887644333344668899999999999999999999999877  4578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC-ccchhhh--------------hhhhhh-hHHh--------------
Q 012159          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSNYINM--------------KKSLSA-SLEE--------------  319 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~-~~~~--------------  319 (470)
                      +.|++.++..++.++.+...++..++...+..+ +.+....              ...... ....              
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  253 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIF  253 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            999997654444443433333221111000000 0000000              000000 0000              


Q ss_pred             hhccCCCCCHHHHhcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCc----hhhHHHHHHHHHHHHHHHHHHH
Q 012159          320 MGESLKDVPWKAIFRSKAVWAMIY--AHFCGSWGHYTCLSWLPTYFSEELSLNL----TEAAWVSILPPLASVLVTSIAA  393 (470)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~g~s~----~~~~~~~~~~~~~~~~~~~~~g  393 (470)
                      ..+..+ .  .+.+|+|.+....+  ...+....+......++.+.++..+.+.    .....+.....+..++...+.+
T Consensus       254 ~~~~~~-~--~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~  330 (489)
T PRK10207        254 FREAFK-L--DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILA  330 (489)
T ss_pred             HHHHhc-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHH
Confidence            000000 0  14556665544332  2444555556666778888875333211    1223455556667777888889


Q ss_pred             HHHHHHHhcC
Q 012159          394 QFADNLIATG  403 (470)
Q Consensus       394 ~l~dr~~~~~  403 (470)
                      ++.||+++|+
T Consensus       331 ~l~~rl~~r~  340 (489)
T PRK10207        331 GIYTHLGSKG  340 (489)
T ss_pred             HHHHHHhhCC
Confidence            9999999886

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.89  E-value=2.3e-20  Score=177.23  Aligned_cols=278  Identities=13%  Similarity=0.010  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchh-hHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (470)
                      ..+|+..|+. -.+...+...|.+.+++|++..+ .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++..++
T Consensus        30 ~~lC~fGF~~-e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L  108 (511)
T TIGR00806        30 LYLCFYGFMA-QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLL  108 (511)
T ss_pred             HHHHHHHHHH-HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            3344433333 34677888899999999999999 999999999999999999999999999999999999999999988


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHH
Q 012159          196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (470)
Q Consensus       196 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  275 (470)
                      ++ +.+++..+.+.|++.|++.|... +...++..|+|+++|+++.|+...+..+|.+++++++++ ...+|||+-+.+.
T Consensus       109 ~~-fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln  185 (511)
T TIGR00806       109 LL-LGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLN  185 (511)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Confidence            86 46667999999999999999999 999999999999999999999999999999999999999 5567998755443


Q ss_pred             ---HHHHHHHHHHHHhhccCCCCCC--CCC-CC-----ccchhhhhhhhhhhHHhhh-c-----cCCCCCHHHHhcCHHH
Q 012159          276 ---GLLGIAWFSGFKILQEGETSNG--ATL-AP-----RSNYINMKKSLSASLEEMG-E-----SLKDVPWKAIFRSKAV  338 (470)
Q Consensus       276 ---~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-----~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~  338 (470)
                         .....+.+++.+++|.+++.--  +.. .+     +.+....... .......+ +     ..-...++...+||.+
T Consensus       186 ~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~v  264 (511)
T TIGR00806       186 IISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-GKLEDYLGTCRDSFLVRMLSELVTIYRNPQL  264 (511)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc-cccchhhhhhhhHHHHHHHHHHHHHhcCcch
Confidence               2223455666677775443210  000 00     0000000000 00000000 0     0001224566788988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (470)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (470)
                      ....+...+...+++.+..|......+.-+-.+...|..-++..+.+.+..+..|++-.++
T Consensus       265 l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       265 LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            8888888888888888888888877654332223567788888888888899998885444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=1.8e-20  Score=185.69  Aligned_cols=260  Identities=13%  Similarity=0.106  Sum_probs=186.5

Q ss_pred             hhhhhHHHh-HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh----hcCcH-HHHHHHHHHHHHHHHHHHhhh
Q 012159          128 MDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLATALLPLLAG  201 (470)
Q Consensus       128 ~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~~  201 (470)
                      .....+..+ .+.+.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++.+...++++.+++...++
T Consensus        13 ~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~   92 (437)
T TIGR00792        13 FIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD   92 (437)
T ss_pred             HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence            333444444 555778899999999999999999999999999999998    67744 566777777766665533221


Q ss_pred             -----HHHHHHHHHHHHHhhccCchhhHHHHhhhcc-CccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-------ccCc
Q 012159          202 -----FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NLGW  268 (470)
Q Consensus       202 -----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~  268 (470)
                           ....+++.+++.+++.+...+...++..+.. ++++|++..++.+.+..+|..+++.+.+.+..       ..+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~  172 (437)
T TIGR00792        93 FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW  172 (437)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence                 1345667778888888888788888888887 56899999999998888888877766655542       4589


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHH
Q 012159          269 ESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (470)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (470)
                      ++.+++.+++.++..+..+ ..+|++++.+..  ++++                 ......++.+++||.++...+..++
T Consensus       173 ~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~--~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~  233 (437)
T TIGR00792       173 FMFALVLALIGVVSLIICFFGTKERYSEIPKN--IEKK-----------------LSLKQIFKALFKNDQLLILCLAYLF  233 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc--cccC-----------------CCHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999998888766655443 344332110000  0000                 0001134678899999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      ...+......+.+.|.+..++ ++...+.+.....++.+++.++.+++.||+++|+....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~  292 (437)
T TIGR00792       234 YNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG  292 (437)
T ss_pred             HHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            877777766666767665555 45566777778889999999999999999998875543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=2.5e-19  Score=172.63  Aligned_cols=256  Identities=17%  Similarity=0.207  Sum_probs=193.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhhccCchhhHHHHh
Q 012159          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLI  228 (470)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i  228 (470)
                      .+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.  ...+++.+++++|++.|+..|........++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46688899999999999999999999999999888777666555443  3457788999999999999999999999999


Q ss_pred             hhccCccchhhHHHHHHhhhhhHHHHHHhhHH-hhh-cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccc-
Q 012159          229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP-PII-ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN-  305 (470)
Q Consensus       229 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~-~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  305 (470)
                      .|..|++.||..-.+.+.+..+|..++..++. .+. ....|++.+....+.+++..+...++||+++.--.++.++++ 
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A  221 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEA  221 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHH
Confidence            99999999999999999999999999966653 233 334599999999999999999999999998864332221111 


Q ss_pred             --hhhhhhhh-------hh---h-HHhhhccCCCCCHHHHhcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Q 012159          306 --YINMKKSL-------SA---S-LEEMGESLKDVPWKAIFRSKAVWAMIYAHFC-----GSWGHYTCLSWLPTYFSEEL  367 (470)
Q Consensus       306 --~~~~~~~~-------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~  367 (470)
                        ..+..+..       ..   + .++..++.+..++.++++++....-....+.     ...+...+..|...++++ .
T Consensus       222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-a  300 (485)
T KOG0569|consen  222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-A  300 (485)
T ss_pred             HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-c
Confidence              11111111       00   0 1111122356778999998766554333222     233334556666666664 6


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       368 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      |++..++.+.....++..++.++++.++.||+|||..+..
T Consensus       301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~  340 (485)
T KOG0569|consen  301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLI  340 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            9999999999999999999999999999999999987776

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.86  E-value=9.9e-19  Score=172.83  Aligned_cols=282  Identities=17%  Similarity=0.181  Sum_probs=200.6

Q ss_pred             HHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh
Q 012159          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (470)
                      ++.....++........++.+..++|-+ ....|+.+...++..++.++.|+++|.+|||.+++.+.++..++.++.+ .
T Consensus        50 ~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a-t  127 (599)
T PF06609_consen   50 SLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA-T  127 (599)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh-c
Confidence            3333334445555566678899999864 6678999999999999999999999999999999999999999998875 6


Q ss_pred             hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHH
Q 012159          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (470)
Q Consensus       200 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  279 (470)
                      +++...++.+..+.|+|.|... .....++|..|.|.|+...++..........++|.++..+..+.+|||.|++.+++.
T Consensus       128 A~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~  206 (599)
T PF06609_consen  128 AQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS  206 (599)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence            7777999999999999976665 456668999999999888887777666666688888888777789999999998876


Q ss_pred             HHHHHHHHhhccCCCCCC--CC-CCCccchhhhhh--------------------hh-----hhh---------------
Q 012159          280 IAWFSGFKILQEGETSNG--AT-LAPRSNYINMKK--------------------SL-----SAS---------------  316 (470)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~--------------------~~-----~~~---------------  316 (470)
                      .+.++..+++..+++..+  .+ ...++...+.+-                    ..     .+.               
T Consensus       207 ~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~  286 (599)
T PF06609_consen  207 GIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVA  286 (599)
T ss_pred             HHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHH
Confidence            665544433333332211  11 111111111110                    00     000               


Q ss_pred             --HHhhh-c-cCCCCCHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHHHH
Q 012159          317 --LEEMG-E-SLKDVPWKAIFRS-KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLV  388 (470)
Q Consensus       317 --~~~~~-~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~~~  388 (470)
                        .-|.. . +.+..+ .+++|+ |.+...++..++..+.++....+.|......++-++.   ..++.....+++..++
T Consensus       287 F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g  365 (599)
T PF06609_consen  287 FVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAG  365 (599)
T ss_pred             HHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHH
Confidence              00100 0 111222 467787 5566667777788888888888999988877776653   5678888889999999


Q ss_pred             HHHHHHHHHHHHhcCCc
Q 012159          389 TSIAAQFADNLIATGVE  405 (470)
Q Consensus       389 ~~~~g~l~dr~~~~~~~  405 (470)
                      ..+.|.+..++++.|..
T Consensus       366 ~~i~g~l~~~ir~~Kw~  382 (599)
T PF06609_consen  366 AVILGLLFSKIRHIKWQ  382 (599)
T ss_pred             HHHHHHHHHHccchhHH
Confidence            99999999988877643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.86  E-value=1.1e-19  Score=182.87  Aligned_cols=271  Identities=18%  Similarity=0.215  Sum_probs=193.0

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhh
Q 012159          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (470)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~  229 (470)
                      +.+++.++..++..++++++|+++|++|||+.++++.+++.++.++.+ .+.++..++++|++.|+|.|........+++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA-LAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            458999999999999999999999999999999999999999998885 6668899999999999999999999999999


Q ss_pred             hccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc-cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccch--
Q 012159          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNY--  306 (470)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  306 (470)
                      |..|++.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+..+++||+++...+..+..+..  
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~  248 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS  248 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence            999999999999999999999999995554444322 48999999988888888777777777766533322111111  


Q ss_pred             hhhhhh-----hhhhHH--------hhhccCCCCCHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 012159          307 INMKKS-----LSASLE--------EMGESLKDVPWKAIFR----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL  369 (470)
Q Consensus       307 ~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  369 (470)
                      ....+.     .....+        +.........++++++    ++.++...+..+....+.....+|.+.+++. .|.
T Consensus       249 l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~  327 (513)
T KOG0254|consen  249 LKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGL  327 (513)
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCC
Confidence            000000     000000        0000111112334433    2334445555555555566677788888775 466


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhhhhHHHHHHHHHHHhh
Q 012159          370 NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLL  430 (470)
Q Consensus       370 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~g~~~~~~~~~~~ig~~~~g~l~  430 (470)
                      +... .....+.++..+++.+++..+.||+|||+       ....+.++..++..+.+...
T Consensus       328 ~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~-------lll~s~~~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  328 KSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK-------LLLFGAAGMSICLVILAVVG  380 (513)
T ss_pred             CCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHhHHHHHHHHHHHHHHH
Confidence            6443 55667777888888888899999999996       44455555555555555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.86  E-value=2.5e-20  Score=168.68  Aligned_cols=293  Identities=16%  Similarity=0.088  Sum_probs=197.5

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCch
Q 012159          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (470)
Q Consensus       142 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  221 (470)
                      +..+.+....|.+.+.+.++..+.++.+|.++||+|||.+++++....++..++. ..++++..+++.|++.|+..|-. 
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~-~~S~~F~afv~aR~l~Gi~kgnl-  138 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW-ALSRNFAAFVLARFLGGIFKGNL-  138 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCch-
Confidence            3344466678999999999999999999999999999999999999988877666 46777767777799999997665 


Q ss_pred             hhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc---ccCchHHH---HHHHHHHHH-HHHHHHhhccCCC
Q 012159          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---NLGWESVF---YIFGLLGIA-WFSGFKILQEGET  294 (470)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~~---~~~~~~~~~-~~~~~~~~~~~~~  294 (470)
                      ....++++|.+++++|+++++.+....++|.++||.+||++..   ..|--+.+   ++..+++.. .....++++|+-+
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            6779999999999999999999999999999999999999987   33321111   122222222 3455667777644


Q ss_pred             CCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012159          295 SNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA-------VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL  367 (470)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  367 (470)
                      .+++...+..    ..+..++. .+. .+.+...-...++|++       ...+.+..+++...+.....+.+.+-++.+
T Consensus       219 ~rk~~~~~~~----~~~~~~~~-~~~-~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rf  292 (451)
T KOG2615|consen  219 LRKRNDEHST----LQEAADDR-LAL-LKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRF  292 (451)
T ss_pred             chhhcccccc----hhhhhhhh-hhh-cchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCcc
Confidence            4333200000    00000000 000 0111111112333332       222344455555555555555555556778


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcch--------------------------------------
Q 012159          368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLI--ATGVETT--------------------------------------  407 (470)
Q Consensus       368 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~--------------------------------------  407 (470)
                      |+++.+.|-+.+..++.+.+.+.......+|..  .+.....                                      
T Consensus       293 g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~  372 (451)
T KOG2615|consen  293 GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTC  372 (451)
T ss_pred             CCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHH
Confidence            999999999988888888887777776666665  2111111                                      


Q ss_pred             -----------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHH
Q 012159          408 -----------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFA  442 (470)
Q Consensus       408 -----------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~  442 (470)
                                       +|+....+.++-++||++.|.+..+...-...++.
T Consensus       373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~  424 (451)
T KOG2615|consen  373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIA  424 (451)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeee
Confidence                             89999999999999999999888765443333333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.86  E-value=3.2e-19  Score=160.45  Aligned_cols=341  Identities=16%  Similarity=0.155  Sum_probs=233.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      .+|..........+...+-....+.+.|.+.+..|.+..+..++......+..+++..+|.++|++|||+.+.+..+..+
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~  154 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTG  154 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHH
Confidence            35666666667777766766677777888888999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      +..++. ...+++..+++.|.+.|+|.|+ .|...++-.+..|..+|..-+-.. ..+.+|.++...++-.+...+||||
T Consensus       155 v~~~is-~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~  231 (528)
T KOG0253|consen  155 VFGVIS-GASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY  231 (528)
T ss_pred             HHHHhh-cCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            776665 4667779999999999999999 888899999999988888877766 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhh---hh-------------hhhhHHhhh----------ccC
Q 012159          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK---KS-------------LSASLEEMG----------ESL  324 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~----------~~~  324 (470)
                      .....+....+.....++++|.++..-.+.++.+...-.+   +.             ..++.++.+          .+.
T Consensus       232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke  311 (528)
T KOG0253|consen  232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKE  311 (528)
T ss_pred             HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccc
Confidence            9998888777778888888888765433322221110000   00             000000000          011


Q ss_pred             CCCCHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--C-----------------CCchhhHHHHHHHH
Q 012159          325 KDVPWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL--S-----------------LNLTEAAWVSILPP  382 (470)
Q Consensus       325 ~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--g-----------------~s~~~~~~~~~~~~  382 (470)
                      ......+++..   +....+....+...+.+++..-......+...  +                 .+...--.=..+..
T Consensus       312 ~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllits  391 (528)
T KOG0253|consen  312 VRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITS  391 (528)
T ss_pred             cccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHH
Confidence            11222333321   12222333334444444444444333333211  0                 11111112244567


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcch-------------------------------------------------------
Q 012159          383 LASVLVTSIAAQFADNLIATGVETT-------------------------------------------------------  407 (470)
Q Consensus       383 ~~~~~~~~~~g~l~dr~~~~~~~~~-------------------------------------------------------  407 (470)
                      +..+.|.++.+++.||+|||+.+..                                                       
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            8889999999999999999998776                                                       


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhh
Q 012159          408 MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  457 (470)
Q Consensus       408 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (470)
                      .|....++.+|+++.|++. ...+..  ......+...+++++++.....
T Consensus       472 vGtcSsmaRIggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHheee
Confidence            8889999999999999988 444433  2333344444455555544433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.85  E-value=3.1e-19  Score=168.72  Aligned_cols=334  Identities=13%  Similarity=0.060  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhh-hcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH--
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS--  190 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~--  190 (470)
                      +..+.+...+++.++..+...++.+...+ ..|++.+++|.+.++..+...+.+++.|.++||+|.||-++....+..  
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            34444555566666667778888777554 589999999999999999999999999999999997776554433221  


Q ss_pred             HHHHHH----HHhhhHH-HHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc
Q 012159          191 LATALL----PLLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (470)
Q Consensus       191 ~~~~~~----~~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (470)
                      .+.+..    ++...+. ...+++.+..|++.....|...+++.++.  ++.+.-.|-...++++|.+++..++|.+.+.
T Consensus        87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i  164 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI  164 (412)
T ss_dssp             CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence            122111    1112222 22333344445555566677777766664  4567778888999999999999999999864


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHH
Q 012159          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (470)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (470)
                       +-...||+..+.+++..++.+..+++.+++....+.....              +++.+.....+++|+|++|.+.+..
T Consensus       165 -~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~k~~~fw~~~l~v  229 (412)
T PF01306_consen  165 -NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------------KDKVSLKDVLSLFKMRNFWFFVLFV  229 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------------HHHHHHHTTSHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------------CCCCcHHHHHHHhcchhHHHHHHHH
Confidence             5677888776666555544444433222221111110000              0000111246889999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---------------
Q 012159          346 FCGSWGHYTCLSWLPTYFSEELS---LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------------  407 (470)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------------  407 (470)
                      ......+.......+.|....+.   .+....|.+.+...+..++...+.+++.+|+|.|+.+.+               
T Consensus       230 ~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~  309 (412)
T PF01306_consen  230 IGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA  309 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh
Confidence            88777777777778888875432   344567888889999999999999999999999987776               


Q ss_pred             ----------------------------------------HH-HHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHH
Q 012159          408 ----------------------------------------MG-ITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  446 (470)
Q Consensus       408 ----------------------------------------~g-~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  446 (470)
                                                              .. ..+....++..+.+.+.|.+.|+.| +...+++++.+
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~i  388 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLI  388 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHH
Confidence                                                    22 2345667888999999999999986 34455555555


Q ss_pred             HHHHHHHHHhhccCCCCCC
Q 012159          447 FYLTGTIVWLAFASSKPQN  465 (470)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~  465 (470)
                      .+.+.+..+...++.+++.
T Consensus       389 v~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  389 VLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHHHHHS--SSSTT
T ss_pred             HHHHHHHheeeecCCCccc
Confidence            5555555555555555543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.85  E-value=2.3e-18  Score=165.94  Aligned_cols=295  Identities=15%  Similarity=0.119  Sum_probs=219.3

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhc-CcHHHHHHHHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-GRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~  197 (470)
                      +...+++.+.....+.++++.+.++.|++..|+|.+.++..+...++++++|.++||.+ +|+++.+..++.++..... 
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~-   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL-   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH-
Confidence            34556666677777888889999999999999999999999999999999999999986 5667766666655555444 


Q ss_pred             HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhH-HhhhcccC---chHHHH
Q 012159          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA-PPIIENLG---WESVFY  273 (470)
Q Consensus       198 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~-~~l~~~~g---~~~~~~  273 (470)
                      ...++++.+++..++..+......|...++..+...  +++.-.|-...++++|.+++.... +.+....+   ..+.++
T Consensus        86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            345556777778888888888888898888888875  566777778888888888775542 33333322   334566


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHH
Q 012159          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (470)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (470)
                      +.++..++.....+.+|+.++++..+...++.                   ...+..+++|+|+++.+.+..++...+..
T Consensus       164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~~-------------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTPPKRSAKESVKKL-------------------LGLDALKLLKNPRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccCCCcccc-------------------cchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            66665555555555566554222111111100                   01123578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch--------------------------
Q 012159          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT--------------------------  407 (470)
Q Consensus       354 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~--------------------------  407 (470)
                      ....+.+.|+++.-|.+....+.+.++..++.++.....+++.+|+|.++.+..                          
T Consensus       225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~  304 (400)
T PF03825_consen  225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQ  304 (400)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            999999999997644788888888889999999999999999999998876665                          


Q ss_pred             ----------------------------------HHHHHH-hhhhHHHHHHHHHHHhhccCCc
Q 012159          408 ----------------------------------MGITNT-VGAVPGIVGVALTGYLLDSTHS  435 (470)
Q Consensus       408 ----------------------------------~g~~~~-~~~~~~~ig~~~~g~l~~~~~~  435 (470)
                                                        .+++.. ..++|..+|..++|++.|..+.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~  367 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA  367 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence                                              455444 4578999999999999998763

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.84  E-value=7.3e-18  Score=168.58  Aligned_cols=168  Identities=15%  Similarity=0.204  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~  193 (470)
                      +..+++..++..+..+.+...++. +.+++|++..+.+++.+.+........+++|+++|| +|||+++.++.++++++.
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            344555555565665556665555 668899999999998888877766777899999999 599999999999999888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccc--hhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      .++++..+..+.+++.+++.|++.|...+...+++.+++|+++  |..++++++.+.++|..+||.+++++.+++|||+.
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~  182 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVA  182 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence            7775444445667788999999999999999999999997543  45688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWF  283 (470)
Q Consensus       272 ~~~~~~~~~~~~  283 (470)
                      |++.++..++..
T Consensus       183 F~i~~i~~~i~~  194 (500)
T PRK09584        183 FALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHH
Confidence            999876544433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.4e-20  Score=163.19  Aligned_cols=310  Identities=13%  Similarity=0.128  Sum_probs=226.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSL  191 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~  191 (470)
                      ...+..+|+..|-+++...........+..+.+++.++..++.+++.....+...++|++.|| +|-|..-++-+....+
T Consensus        43 ~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~  122 (459)
T KOG4686|consen   43 FMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL  122 (459)
T ss_pred             HHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence            344455555555566666666666777888889999999999999999999999999999996 6777665555555556


Q ss_pred             HHHHHHH--hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc-
Q 012159          192 ATALLPL--LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW-  268 (470)
Q Consensus       192 ~~~~~~~--~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~-  268 (470)
                      +.++++.  ..+.+|++..+|++.|+|.-....+.+.+...|+..|+.+.++|+..+...+|..+--.+.+++.+..+- 
T Consensus       123 GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~  202 (459)
T KOG4686|consen  123 GQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRM  202 (459)
T ss_pred             HHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHh
Confidence            6655532  4577899999999999998888889999999999999999999999999999999888888888765321 


Q ss_pred             -----hHHH---HHHHHHH-HHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHH
Q 012159          269 -----ESVF---YIFGLLG-IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW  339 (470)
Q Consensus       269 -----~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (470)
                           +...   ...+... ....++...+--.+...++.       .+.++.      ...+..+....+.  -.|++|
T Consensus       203 ~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAeri-------lh~e~g------~~Ge~pkLtdv~~--f~ppfw  267 (459)
T KOG4686|consen  203 FPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERI-------LHLEEG------FLGEEPKLTDVNT--FYPPFW  267 (459)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-------HhhhcC------cccCCcccccccc--cCccHH
Confidence                 1111   1111111 11112211111100000000       000000      0000000001011  137899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch------------
Q 012159          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT------------  407 (470)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~------------  407 (470)
                      .+.+.++++..+.+.+...-|.++++.+|+|+..++-+.+.....+.+...+.|.++||+|++-..+.            
T Consensus       268 ~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~  347 (459)
T KOG4686|consen  268 VLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG  347 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999876665            


Q ss_pred             ------------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCcee
Q 012159          408 ------------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWS  437 (470)
Q Consensus       408 ------------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~  437 (470)
                                                                .|.++.+..+|..+.|.+.|++.|..+++.
T Consensus       348 l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~  419 (459)
T KOG4686|consen  348 LFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD  419 (459)
T ss_pred             HHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence                                                      888999999999999999999999877543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.82  E-value=2.4e-18  Score=174.06  Aligned_cols=279  Identities=17%  Similarity=0.098  Sum_probs=198.1

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCc
Q 012159          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (470)
Q Consensus       141 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  220 (470)
                      .+.++.+.....+..+++.+|.++|++++|.++||+|||++++++.++..++.++. .++++++.+++.|++.|++.++.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~-a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT-AFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhccch
Confidence            35566788889999999999999999999999999999999999999999988666 47788899999999999999999


Q ss_pred             hhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 012159          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL  300 (470)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (470)
                      ......++.|++++++|+.+..+ ......++.+++++++++..  +||+.+++..+..++.++..++.+|.++....+.
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG  265 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence            99999999999999999999999 88888889999999999887  8999999999998877777655557666543333


Q ss_pred             CCccchhhhhhh---------hhh---hH---H--hhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          301 APRSNYINMKKS---------LSA---SL---E--EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF  363 (470)
Q Consensus       301 ~~~~~~~~~~~~---------~~~---~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (470)
                      +.++.....++.         ...   ..   .  ......+...+..+++.|++....+...+..+.......-++...
T Consensus       266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~  345 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNV  345 (521)
T ss_pred             chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Confidence            222111111110         000   00   0  001112334577888888655555555544443333333333333


Q ss_pred             HHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhhhhHHHHHHHHHHHhhccCC
Q 012159          364 SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTH  434 (470)
Q Consensus       364 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~g~~~~~~~~~~~ig~~~~g~l~~~~~  434 (470)
                      . .+|.+..   +.....+.....+....+...|+.|||.       ....+.+...++.++.+++.+...
T Consensus       346 ~-~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~-------~~~~~~~~~~~~~~~~~~~~~~~~  405 (521)
T KOG0255|consen  346 S-GLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRP-------PLFLSLFLAGIGLLLFGWLPDDLG  405 (521)
T ss_pred             h-hcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHhhccch
Confidence            3 3444432   3444444577777777889999998884       445555556666666677665443

>PTZ00207 hypothetical protein; Provisional

Probab=99.81  E-value=2.3e-17  Score=164.26  Aligned_cols=287  Identities=12%  Similarity=0.116  Sum_probs=199.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +|..+...+....+ ....+.++.+.+.+.+++|++..+++++.++. ....+++++.|++.||+|+|+++.++.+++++
T Consensus        26 Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~i  103 (591)
T PTZ00207         26 RFALLVLGAFCSIC-TSFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL  103 (591)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44444433333333 23345666778889999999999999998874 44556788899999999999999999999999


Q ss_pred             HHHHHHHhh-----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHH-HHhhHHhhhcc
Q 012159          192 ATALLPLLA-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA-GLLLAPPIIEN  265 (470)
Q Consensus       192 ~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~  265 (470)
                      +.+++++..     .+++.+++.|++.|++.+...+.....+.+++| ++||++.|+...+.++|.++ +++..+++.  
T Consensus       104 G~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--  180 (591)
T PTZ00207        104 GTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--  180 (591)
T ss_pred             HHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            998886541     467899999999999999998999999999997 88999999999999999986 444444443  


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCC---C--CCCccchh----------------hh---------------
Q 012159          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGA---T--LAPRSNYI----------------NM---------------  309 (470)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~----------------~~---------------  309 (470)
                      .+|++.|++.+++.++..++++.+.+.++....   +  .+++++..                +.               
T Consensus       181 ~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~  260 (591)
T PTZ00207        181 DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLP  260 (591)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHH
Confidence            368888998888876665555444333322110   0  00111000                00               


Q ss_pred             -----h------h-------h-hh-----------------------hh---H------------Hhh---h---c---c
Q 012159          310 -----K------K-------S-LS-----------------------AS---L------------EEM---G---E---S  323 (470)
Q Consensus       310 -----~------~-------~-~~-----------------------~~---~------------~~~---~---~---~  323 (470)
                           .      +       . ..                       +.   .            .+.   .   +   .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  340 (591)
T PTZ00207        261 LQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAP  340 (591)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCC
Confidence                 0      0       0 00                       00   0            000   0   0   0


Q ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012159          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE--AAWVSILPPLASVLVTSIAAQFADNLIA  401 (470)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (470)
                      ....++.+.+++..+|.+++..++.......+...+.++.+..-|.+...  ...+.++.++++.+|++..|.+.....+
T Consensus       341 ~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~  420 (591)
T PTZ00207        341 QFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQK  420 (591)
T ss_pred             CCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHh
Confidence            01126778888999999999999998888888888888887532763333  3337899999999999999999844444


Q ss_pred             cC
Q 012159          402 TG  403 (470)
Q Consensus       402 ~~  403 (470)
                      |+
T Consensus       421 ~~  422 (591)
T PTZ00207        421 RR  422 (591)
T ss_pred             hc
Confidence            43

>TIGR00788 fbt folate/biopterin transporter

Probab=99.80  E-value=1.1e-17  Score=165.81  Aligned_cols=312  Identities=13%  Similarity=0.068  Sum_probs=210.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHh-HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhc-----CcHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVL  187 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~  187 (470)
                      ..+.++...++..++. ...... .+.+.+++|++..+++...++..+...+-.+ +|+++||++     ||+.++++.+
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            4445555567777777 444444 5557778999999999999999999988655 999999997     6777777766


Q ss_pred             HHH-HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhH---HHHHHhhhhhHHHHHHhhHHhhh
Q 012159          188 IWS-LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA---VSFVFGGLSFGSVAGLLLAPPII  263 (470)
Q Consensus       188 ~~~-~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~g~~~~~~l~  263 (470)
                      +.+ +....++...+......+..++.+++.+...++..++..|..+ +++...   .++.....++|.++|+.++|.+.
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            652 3332232222333344457889999999999999999999998 555443   33444445689999999999999


Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccc-h-hhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHH
Q 012159          264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN-Y-INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM  341 (470)
Q Consensus       264 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (470)
                      +.++|+..|++.+++.++..+..++++|+++.......+++. . ............+     ........+++|.+|..
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~i~~~  257 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKV-----QILGLRGAIQLLEIAKP  257 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHH-----HHHHHHHHHhcHHHHHH
Confidence            999999999999888877766666666653111111000000 0 0000000000000     01123456788888876


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------
Q 012159          342 IYAHFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------  407 (470)
Q Consensus       342 ~l~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------  407 (470)
                      .+..++ +.........+. .+.++.+|+++...|++....+++.+++..+.+++.+|++.|+.+..             
T Consensus       258 l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~  336 (468)
T TIGR00788       258 LIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDL  336 (468)
T ss_pred             HHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCce
Confidence            665555 222212111111 12334679999999999999999999999999999999887765433             


Q ss_pred             ----------------------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCC
Q 012159          408 ----------------------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTH  434 (470)
Q Consensus       408 ----------------------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~  434 (470)
                                                                          .++.+.+..+|..+++.++|++.+..+
T Consensus       337 ~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       337 ILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             eeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                                888888999999999999999988765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.79  E-value=2.7e-16  Score=153.62  Aligned_cols=276  Identities=12%  Similarity=0.112  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhh----hhcCcHHHHHH-HH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQTG-VL  187 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~  187 (470)
                      |+++ .++...+...+.+......++.+.+++|.+....+++..+..+...+.+++.|+++|    |+|||+.++++ .+
T Consensus         4 ~~li-~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         4 RKLL-RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            3443 334444455666777777777788999999999999999999999999999999999    59999998875 44


Q ss_pred             HHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhccCchhhHHHHhhhccCccch--hhHHHHHHhhhh
Q 012159          188 IWSLATALLPLLAGF----------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLS  249 (470)
Q Consensus       188 ~~~~~~~~~~~~~~~----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~  249 (470)
                      ...++.+++++..+.                .+..+++..+..++.....+...++++|.+|+++|  +.+.++.+.+.+
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence            444444444332211                02233334445567777888889999999998765  679999999999


Q ss_pred             hHHHHHHhhHHhh--hccc-------------CchHHHHHHHHHHHHHHHHHH-hhccCCCCCCCCCCCccchhhhhhhh
Q 012159          250 FGSVAGLLLAPPI--IENL-------------GWESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSL  313 (470)
Q Consensus       250 ~g~~~g~~~~~~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (470)
                      +|.++|+.++++.  .+.+             +.++.|++.+++.++..+... ..+|++...+++..+ ++..      
T Consensus       163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~-~~~~------  235 (477)
T TIGR01301       163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN-SEAA------  235 (477)
T ss_pred             HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh-hhcc------
Confidence            9999999999875  2211             568889988887666555444 444543322111000 0000      


Q ss_pred             hhhHHhhhccCCCCCHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCch------h----hHHH
Q 012159          314 SASLEEMGESLKDVPWKAIFR-----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLT------E----AAWV  377 (470)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~------~----~~~~  377 (470)
                           +.++......++++++     .+.++.+++..++.+++++.+..|.+.|+.+ .++-++.      +    ..+.
T Consensus       236 -----~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~  310 (477)
T TIGR01301       236 -----PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFG  310 (477)
T ss_pred             -----cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHH
Confidence                 0000000112233332     3678999999999999999999999998764 4553321      1    1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 012159          378 SILPPLASVLVTSIAAQFADNLIA  401 (470)
Q Consensus       378 ~~~~~~~~~~~~~~~g~l~dr~~~  401 (470)
                      ...+.+...+.+++..++.+|+|+
T Consensus       311 l~~~s~~~~i~s~~l~~l~~~~g~  334 (477)
T TIGR01301       311 LMLNSVVLGITSIGMEKLCRGWGA  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            444555555666677777777764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.79  E-value=5.5e-16  Score=152.39  Aligned_cols=295  Identities=17%  Similarity=0.160  Sum_probs=218.6

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH-HHHHHHHHh-hhHHHHHHHHHHHHHhhccCchhhHHHH
Q 012159          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS-LATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDL  227 (470)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~  227 (470)
                      ..++..++..+..++..++.|.++|+-|+||.++....+.+ +...++.+. ++.++...++.++.-++.+......+++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999998777766544443 344444333 3445555666666677778888999999


Q ss_pred             hhhccCccch--------------------------hhHHHHHHhhhhhHHHHHHhhHHhhhcc--------cCchHHHH
Q 012159          228 IARSIPLEER--------------------------SRAVSFVFGGLSFGSVAGLLLAPPIIEN--------LGWESVFY  273 (470)
Q Consensus       228 i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~g~~~~~~  273 (470)
                      +.+..+++++                          ++..+.-...+.+|+++.-++.-.+...        .+.|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          8999998888889988877765554322        23477788


Q ss_pred             HHHHHHHHHHHH-HHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHH
Q 012159          274 IFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (470)
Q Consensus       274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (470)
                      +.++..++..+. +++++++++++..+...  ...  .....+.         ...++++.+.|.+..++++.+++.-+.
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~--~~~--~~g~~~l---------~~t~k~~~~~~~~~~fLia~~l~~dg~  297 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGS--SYL--RFGFKRL---------WRTFKEIRKLRQLFLFLIAYFLYSDGV  297 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcch--hHH--HHHHHHH---------HHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            877776555444 44444443322111111  100  0000000         113467778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcch-----------------------
Q 012159          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT--GVETT-----------------------  407 (470)
Q Consensus       353 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~~~-----------------------  407 (470)
                      ..+..+...|.++.+|++..+...+..+..+.+++|.++.|++.||+|.|  +.+..                       
T Consensus       298 ~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~  377 (477)
T PF11700_consen  298 NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL  377 (477)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            99999999999999999999999999999999999999999999999999  44333                       


Q ss_pred             ----------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHH
Q 012159          408 ----------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF  447 (470)
Q Consensus       408 ----------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  447 (470)
                                                              +|++.+.+-..+.+||++.|.+.+.++..+..+..+.+++
T Consensus       378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf  457 (477)
T PF11700_consen  378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF  457 (477)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence                                                    9999999999999999999999999998888777766655


Q ss_pred             HHHHHHHHhh
Q 012159          448 YLTGTIVWLA  457 (470)
Q Consensus       448 ~~~~~~~~~~  457 (470)
                      ++...+++.+
T Consensus       458 ~~gl~ll~~v  467 (477)
T PF11700_consen  458 LIGLILLFFV  467 (477)
T ss_pred             HHHHHHHhhc
Confidence            5554444333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.79  E-value=1.4e-15  Score=149.10  Aligned_cols=174  Identities=17%  Similarity=0.182  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSL  191 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~  191 (470)
                      +-+..++...+...+..+.+...+|. +.+++|++..+.+.+.+.+.+...++.+++|+++||+ |||+++.++.++.++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            44445555556666666666666666 5667899999999999999999999999999999999 999999999999888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCcc--chhhHHHHHHhhhhhHHHHHHhhHHhhhcccCch
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                      +.++++....+...+++...+.+++.|...+...++++|.+|++  +|.+++++.+.+.++|+.++|.+.+++.+.+||+
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            87665422222123444444555666777788889999999875  6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 012159          270 SVFYIFGLLGIAWFSGFK  287 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~  287 (470)
                      +.|.+.++..++.++.++
T Consensus       169 ~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999987765444444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.78  E-value=8.8e-17  Score=149.53  Aligned_cols=313  Identities=15%  Similarity=0.152  Sum_probs=235.5

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHH
Q 012159          105 PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT  184 (470)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (470)
                      ..|..++||.+++...+..+.+.+.+..+++........+| +....-|...+|++.+....+++-|+.||+|-|...++
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            45566778888888888888888888888877777777888 77778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-----hHHH--HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHh
Q 012159          185 GVLIWSLATALLPLLA-----GFMP--GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (470)
Q Consensus       185 ~~~~~~~~~~~~~~~~-----~~~~--~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (470)
                      +..+.+++..+-....     +.++  ..+.+..+.+.+.-.......-+..-||++++|..+..+-..+..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999887653221     3344  67788888888877777666777888999999999999999999999999998


Q ss_pred             hHHhhhccc------CchH--HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCH
Q 012159          258 LAPPIIENL------GWES--VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (470)
Q Consensus       258 ~~~~l~~~~------g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (470)
                      +...+..+-      .|..  .|+..++++.+.++...+...++++.+........+               +..-..+.
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~si  259 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKSI  259 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHHH
Confidence            888887654      2443  344445554444433333333322221111111000               01112346


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch--
Q 012159          330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT--  407 (470)
Q Consensus       330 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~--  407 (470)
                      ++.++|+++..+.+.+.+....+++..+.+-.-+.. -|++...+|.+.....+++++++++.|.+.||.+..+....  
T Consensus       260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~  338 (480)
T KOG2563|consen  260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVL  338 (480)
T ss_pred             HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            789999999999888888888777777777655553 48888899999999999999999999999999987655332  


Q ss_pred             ----------------------------------------------------------HHHHHHhhhhHHHHHHHHHHHh
Q 012159          408 ----------------------------------------------------------MGITNTVGAVPGIVGVALTGYL  429 (470)
Q Consensus       408 ----------------------------------------------------------~g~~~~~~~~~~~ig~~~~g~l  429 (470)
                                                                                .|.++..+.+-+.+-..+.+..
T Consensus       339 ~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~  418 (480)
T KOG2563|consen  339 YLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGIL  418 (480)
T ss_pred             HHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHH
Confidence                                                                      7888888888888888888888


Q ss_pred             hccCC
Q 012159          430 LDSTH  434 (470)
Q Consensus       430 ~~~~~  434 (470)
                      .+..+
T Consensus       419 ~~~~~  423 (480)
T KOG2563|consen  419 AEDLG  423 (480)
T ss_pred             hhccC
Confidence            87666

>PRK09669 putative symporter YagG; Provisional

Probab=99.78  E-value=5.2e-17  Score=160.98  Aligned_cols=254  Identities=13%  Similarity=0.047  Sum_probs=169.5

Q ss_pred             hhHHHh-HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh----hcCc-HHHHHHHHHHHHHHHHHHHhh----
Q 012159          131 VNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGR-KVLQTGVLIWSLATALLPLLA----  200 (470)
Q Consensus       131 ~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~~~~~~~~~~----  200 (470)
                      ..++.+ ...+.+.+|+++.++|.+.++..+..++..++.|+++||    +||| +.++.+.+..++...++...+    
T Consensus        26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~  105 (444)
T PRK09669         26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGA  105 (444)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCc
Confidence            334444 555788899999999999999999999999999999998    6774 555566666666654442222    


Q ss_pred             -hHHHHHHHHHHHHHhhccCchhhHHHHhhhcc-CccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-------ccCchHH
Q 012159          201 -GFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NLGWESV  271 (470)
Q Consensus       201 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~~~  271 (470)
                       .....+++..++.+.+.........++.+++. ++++|.+..++...+..+|..+++.+...+..       ..||+..
T Consensus       106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~  185 (444)
T PRK09669        106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA  185 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence             11344555566667766677777889999988 56889998888888888887777765544332       2467878


Q ss_pred             HHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHH
Q 012159          272 FYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (470)
                      +.+.+++.++..+..++. +|+..++ +  .++ .                  .....++.+++||.++.+.+..++...
T Consensus       186 ~~i~~ii~~v~~~~~~~~~~e~~~~~-~--~~~-~------------------~~~~~~~~~~~n~~~~~l~~~~~~~~~  243 (444)
T PRK09669        186 MMVMGLLGVVLFFCCFFMTKERYTPE-V--DNS-S------------------SVWKDLKLLLGNSQWRIMFIFNVVLLT  243 (444)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEecCCC-C--cCC-C------------------CHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            887777766554444333 3321111 0  000 0                  001234678899999988877777666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      .........+.|.+...+ ++...+.+.....+..+++.++.+++.||+++|+....
T Consensus       244 ~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~  299 (444)
T PRK09669        244 AVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW  299 (444)
T ss_pred             HHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            665555544544443333 23344455556667788888999999999998876543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.77  E-value=8.6e-17  Score=150.76  Aligned_cols=216  Identities=14%  Similarity=0.104  Sum_probs=168.3

Q ss_pred             hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc-------------
Q 012159          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------------  265 (470)
Q Consensus       199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------  265 (470)
                      ..++++.+++..++.|.|.+...+..+.++++..+++++++.+++.+.+.++|..++|++++.+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4466789999999999999999999999999999999999999999999999999999999988732             


Q ss_pred             ---cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHH
Q 012159          266 ---LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (470)
Q Consensus       266 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (470)
                         ..|+++|++.+++.++..+.+.+.+.++.+++..  ++..             + ++   ....++.+++|.++...
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~--~~~~-------------~-~~---~~~~~~~~~~~~~~l~~  146 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV--ARVS-------------S-GD---TTQKTSAFQFTHLVLGA  146 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc--cccc-------------c-cc---ccchhhHHhhHHHHHHH
Confidence               3689999977777655555544443322111100  0000             0 00   00113567788999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------
Q 012159          343 YAHFCGSWGHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------  407 (470)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------  407 (470)
                      +..+++...+.++..|++.|+.+.  +|+++.+++...+.+..+.++|+++.+++.||++.++.+..             
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~  226 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAA  226 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            888888889999999999999854  69999999999999999999999999999999998876543             


Q ss_pred             ----------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCC
Q 012159          408 ----------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTH  434 (470)
Q Consensus       408 ----------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~  434 (470)
                                                              .++ ...+.+|++++|++.|.+.|..+
T Consensus       227 ~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai-~~~~~~Gg~i~P~l~G~lad~~g  292 (310)
T TIGR01272       227 LTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGI-LCLAIVGGAIVPLLQGSLADCLG  292 (310)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHHHHhcchHHHHHHHHHHHhcc
Confidence                                                    333 45677788888888888888665

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.76  E-value=6.2e-18  Score=156.95  Aligned_cols=319  Identities=21%  Similarity=0.252  Sum_probs=219.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhc-C-------CCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-G-------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ  183 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  183 (470)
                      ..+.+.+..++++...++...++...+.+...+ |       ++....+.+..+..+|.++|++++|++.||+|||+++.
T Consensus        39 ~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG  118 (538)
T KOG0252|consen   39 HFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYG  118 (538)
T ss_pred             HHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Confidence            456677777888888888888888877765433 2       45677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHh
Q 012159          184 TGVLIWSLATALLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (470)
Q Consensus       184 ~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (470)
                      ..++++.++++++++..      .-.+.+...|++.|+|.|+-+|...+..+|...++.||...+...+..++|...|.+
T Consensus       119 ~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~i  198 (538)
T KOG0252|consen  119 KELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGI  198 (538)
T ss_pred             HHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence            99999999887654321      224678899999999999999999999999999999999999988888888887777


Q ss_pred             hHHhhhccc---------------CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccc-hhhhhhhh----hhh-
Q 012159          258 LAPPIIENL---------------GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN-YINMKKSL----SAS-  316 (470)
Q Consensus       258 ~~~~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~-  316 (470)
                      ++-.+...+               -||..+.+.++.+++....-+.++|+++...-...+.+. ..+..+..    .++ 
T Consensus       199 vt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~  278 (538)
T KOG0252|consen  199 VALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAES  278 (538)
T ss_pred             HHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhh
Confidence            665554211               289888888888888887778888876654111100000 00000000    000 


Q ss_pred             HHhh--hccCCCC-CHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHH--------HHHH-H
Q 012159          317 LEEM--GESLKDV-PWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW--------VSIL-P  381 (470)
Q Consensus       317 ~~~~--~~~~~~~-~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~~-~  381 (470)
                      ..+.  ....... .+...+..   +.+...+...|+...+++....+...+++. .|+.+.....        ...+ .
T Consensus       279 ~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia  357 (538)
T KOG0252|consen  279 TAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIA  357 (538)
T ss_pred             ccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHH
Confidence            0000  0011111 12233322   344555667777788888888888888874 5765544332        1111 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcch------------------------------------------------------
Q 012159          382 PLASVLVTSIAAQFADNLIATGVETT------------------------------------------------------  407 (470)
Q Consensus       382 ~~~~~~~~~~~g~l~dr~~~~~~~~~------------------------------------------------------  407 (470)
                      ..+.+.|..+...++|++||+.....                                                      
T Consensus       358 ~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa  437 (538)
T KOG0252|consen  358 VCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA  437 (538)
T ss_pred             HHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence            12223345555667899998865443                                                      


Q ss_pred             ------HHHHHHhhhhHHHHHHHHHHHhhc
Q 012159          408 ------MGITNTVGAVPGIVGVALTGYLLD  431 (470)
Q Consensus       408 ------~g~~~~~~~~~~~ig~~~~g~l~~  431 (470)
                            -|+....+-+|+++|....+++.+
T Consensus       438 rvR~t~hGIsAA~GK~GAivg~~~F~~~t~  467 (538)
T KOG0252|consen  438 RVRSTCHGISAASGKAGAIVGAFGFLYLTD  467 (538)
T ss_pred             HHhhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence                  677788888999999999999888

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.75  E-value=2.9e-16  Score=154.86  Aligned_cols=253  Identities=17%  Similarity=0.199  Sum_probs=191.1

Q ss_pred             HhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhh----hhcCcHHH-HHHHHHHHHHHHHHHHhhh-------H
Q 012159          135 VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVL-QTGVLIWSLATALLPLLAG-------F  202 (470)
Q Consensus       135 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~-~~~~~~~~~~~~~~~~~~~-------~  202 (470)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+||||.. +++....+++..++....+       .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            3355677888999999999999999999999999999999    78976654 4666777777666633312       1


Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhhccC-ccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc-------CchHHHHH
Q 012159          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-------GWESVFYI  274 (470)
Q Consensus       203 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~~~~  274 (470)
                      ...+.+..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2234666777789999999999999999996 578999999999988888876666666665432       58888888


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 012159          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (470)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (470)
                      .+++.++..++..+..++++.+.....+                   +..-...++.+++||.++.+.+..++...+...
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~  243 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFAL  243 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHHHHHHHHHHHhhhhh
Confidence            8887766655554443331111110000                   011123467889999999999999999898888


Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       355 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      .....+.|.+...|.+ ...+.+.....++.+++.++.++++||+|+|+....
T Consensus       244 ~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  244 MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            8888899998888876 566777888899999999999999999999997765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.75  E-value=1.4e-21  Score=194.50  Aligned_cols=283  Identities=19%  Similarity=0.232  Sum_probs=190.5

Q ss_pred             HHHHHHHhhhhhHHHhHHhhh--hhcCCC---------chhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHH
Q 012159          121 LAFVICNMDKVNLSVAIIPMS--HRFGWN---------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~--~~~g~s---------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (470)
                      ++.+..+++...++...+...  ..++.+         ..+.+++.+...++..+|.+++|.++||+|||+.+.++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344555666655555544432  222222         235688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh---HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          190 SLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       190 ~~~~~~~~~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      .++.++.+ .++   +++.+.++|++.|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+....
T Consensus        87 ~i~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   87 IIGSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99988775 455   67999999999999999999999999999999999999999999999999999888876554433


Q ss_pred             ---CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhh-----hhhhhHHhhhcc-----CCCCCHHHHh
Q 012159          267 ---GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK-----SLSASLEEMGES-----LKDVPWKAIF  333 (470)
Q Consensus       267 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~  333 (470)
                         +||..+++.+++.++..+..+++||+++.-..+.+.++.....++     ..+++.++..+.     ..+..+++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence               499999999988877777778888887764333322221111111     000111111110     1113456677


Q ss_pred             cCHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          334 RSKA----VWAMIYAHFCG-SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       334 ~~~~----~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      +++.    +.......++. ..+......+.+.+++ ..|.+..  -.......+...++.++..++.||+|||+....
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~  321 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLII  321 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccc--ccccccccccccccccccccccccccccccccc
Confidence            6643    22222222222 2222334445555554 4566665  223344556666777777899999999976554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.73  E-value=1.7e-15  Score=151.12  Aligned_cols=265  Identities=12%  Similarity=0.061  Sum_probs=176.9

Q ss_pred             HHHHHHHhhhhhHHHhHH-hhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhh----hhcC-cHHHHHHHHHHHHHHH
Q 012159          121 LAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGG-RKVLQTGVLIWSLATA  194 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~~  194 (470)
                      ++.+...+....+..+++ .+.+.+|+++.++|.+..+..+..++..++.|.++|    |+|| |+.++++....+++..
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            344444444555555544 467778999999999999999999999999999999    5698 5566667777666655


Q ss_pred             HHHHhhh------HHHHHHHHHHHHHhhccCchhhHHHHhhhcc-CccchhhHHHHHHhhhhhHHHHHHhhHHhhhc---
Q 012159          195 LLPLLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---  264 (470)
Q Consensus       195 ~~~~~~~------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---  264 (470)
                      ++ +..+      .+..+++..++.+++.....+...++..++. ++++|.+..++...+.++|+.+++.+...+.+   
T Consensus        93 ll-f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g  171 (473)
T PRK10429         93 LL-FSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG  171 (473)
T ss_pred             HH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55 3321      1234555666778888888888899999998 68899999998777777776666555443322   


Q ss_pred             ----ccCchHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHH
Q 012159          265 ----NLGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW  339 (470)
Q Consensus       265 ----~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (470)
                          ..+|+...++.+++.++..+..++ .+|+......+..++++                 ..-...++.+++||.++
T Consensus       172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~n~~~~  234 (473)
T PRK10429        172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSH-----------------LTLKDIVALIYKNDQLS  234 (473)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccC-----------------CCHHHHHHHHhcCHHHH
Confidence                124666666666665544433333 33332111100000000                 00011235567899998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012159          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (470)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  404 (470)
                      .+++..++..........+.+.|.+...+ +....+.+.....++.+++.++.+++.||+|+|+.
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~  298 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL  298 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            88888888877777776777766654433 45566677777778899999999999999999974

>PRK09848 glucuronide transporter; Provisional

Probab=99.72  E-value=1.9e-15  Score=150.15  Aligned_cols=264  Identities=10%  Similarity=0.035  Sum_probs=163.4

Q ss_pred             HHHHHHHhhhhhHHHh-HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh----cCcHHH-HHHHHHHHHHHH
Q 012159          121 LAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF----GGRKVL-QTGVLIWSLATA  194 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~~~~  194 (470)
                      ++.+...+......++ .+++.+.+|++..++|.+.++..+..++..++.|+++||.    |||+.. .++.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            3444444444444444 4457777899999999999999999999999999999996    666644 555444444333


Q ss_pred             HHHHhh------hHHHHHHHHHHHHHhhccCchhhHHHHhhhcc-CccchhhHHHHHHhhh-----hhHHHHHHhhHHhh
Q 012159          195 LLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGL-----SFGSVAGLLLAPPI  262 (470)
Q Consensus       195 ~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~-----~~g~~~g~~~~~~l  262 (470)
                      ++....      ......++..++.+++.+...+...++..+.. ++++|.+..++-..+.     .++..++|.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848         95 LVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            321111      11223344556678777777777777777666 4467888776655433     34555666665543


Q ss_pred             hccc--CchHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHH
Q 012159          263 IENL--GWESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW  339 (470)
Q Consensus       263 ~~~~--g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (470)
                      ....  +|.....+.+++.++..++. ...+|+.+.+ .   ++..                   ....++.+++||.++
T Consensus       175 g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~-~---~~~~-------------------~~~~~~~l~~n~~f~  231 (448)
T PRK09848        175 PEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI-V---AQPS-------------------LKISLQTLKRNRPLF  231 (448)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC-c---cCCC-------------------HHHHHHHHhCCchHH
Confidence            2111  12111122222222222222 1222221110 0   0000                   011256789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      ...+..++...+........|.|+++.+|.++...++......++.+++.++.+++.||+++|+....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            99888888888888888888888888888877666655555567788899999999999998876553

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.70  E-value=3.9e-16  Score=155.40  Aligned_cols=290  Identities=16%  Similarity=0.173  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      ...+.++.+..+...+....+...+..+.+.|+++..+.|++.+.+-++..+...+..+..-|..|-+++-++.++++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg  175 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG  175 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence            34566677777777777777777788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-------------------h--------------------------------HHHHHHHHHHHHHhhccCch
Q 012159          193 TALLPLLA-------------------G--------------------------------FMPGLVLSRVLVGIGEGVSP  221 (470)
Q Consensus       193 ~~~~~~~~-------------------~--------------------------------~~~~l~~~~~l~G~~~~~~~  221 (470)
                      .+++++-.                   +                                .+..++++.++.|+|....+
T Consensus       176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~  255 (735)
T KOG3626|consen  176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF  255 (735)
T ss_pred             HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence            98875321                   0                                12257788899999999999


Q ss_pred             hhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc------------------C-chHHHHHHHHHHHHH
Q 012159          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------------G-WESVFYIFGLLGIAW  282 (470)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------------------g-~~~~~~~~~~~~~~~  282 (470)
                      +...+++-|...+++-...+|+......+|.++|-++++++...+                  | |+..|++.+.+.++.
T Consensus       256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886432                  2 677788888888888


Q ss_pred             HHHHHhhccCCCCCCCCCCCccc-hhhhhhhhhhhHHhhhcc--CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          283 FSGFKILQEGETSNGATLAPRSN-YINMKKSLSASLEEMGES--LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (470)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (470)
                      .+.++++|++.+...+....++. ....+....+......+.  .-...++++++||.+....+...+....+.++.+|+
T Consensus       336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl  415 (735)
T KOG3626|consen  336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL  415 (735)
T ss_pred             HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence            88888888776654332111110 000000000000000000  011235788999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 012159          360 PTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       360 ~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~  402 (470)
                      |-|++.++|.++..+..+.....+ +..+|.+++|++.+|+..+
T Consensus       416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            999999999999999988866665 5677888899999988755

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=3.4e-14  Score=131.84  Aligned_cols=287  Identities=17%  Similarity=0.117  Sum_probs=214.2

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH-HHHHHHHHhhh--HHHHHHHHHHHHHhhccCchhhH
Q 012159          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS-LATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAA  224 (470)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~  224 (470)
                      .+..+...++..+..++.+++.|.++|+.|+||.....+...+ +..+++.+.++  +++..++..++..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3457888899999999999999999999997776655444433 34444444445  56677777888899999999999


Q ss_pred             HHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhH--Hhh-h---------------cccCchHHHHHHHHHHHHHHHHH
Q 012159          225 TDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPI-I---------------ENLGWESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       225 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l-~---------------~~~g~~~~~~~~~~~~~~~~~~~  286 (470)
                      .+++.+..++++-++..++-.....+|+.+.-++.  +.+ .               +...-|.++.+.++-.++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999889888887777777766654432  111 1               12245777888777766665555


Q ss_pred             HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (470)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (470)
                      +...++.+... .  +..+  ......++.         ..+++++.+++.+..+++..+++.-+..++..+...|..+.
T Consensus       217 ~~~v~~~~~~~-~--~~~~--~l~~g~k~L---------~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~  282 (438)
T COG2270         217 ILNVHDAEKIS-S--PPPT--ALRNGFKEL---------KSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD  282 (438)
T ss_pred             Hhccccccccc-c--cchH--HHHHHHHHH---------HHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            44443333211 0  0000  000111111         12357788888999999999999999999999999999989


Q ss_pred             hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---------------------------------------
Q 012159          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------------------------------------  407 (470)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------------------------------------  407 (470)
                      +|++..+..++.....+.+++|+++.|++.||++.|+.+..                                       
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S  362 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS  362 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence            99999999999999999999999999999999999977665                                       


Q ss_pred             ----------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHH
Q 012159          408 ----------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  448 (470)
Q Consensus       408 ----------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  448 (470)
                                      +|+++..+...+.+||++.+.+.+.++..+..+..+.++..
T Consensus       363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~  419 (438)
T COG2270         363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL  419 (438)
T ss_pred             HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence                            99999999999999999999999999987776666544433

>PRK11462 putative transporter; Provisional

Probab=99.67  E-value=5.3e-14  Score=139.54  Aligned_cols=261  Identities=11%  Similarity=0.020  Sum_probs=174.2

Q ss_pred             HHHHHHhhhhhHHHh-HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh----hcCcH-HHHHHHHHHHHHHHH
Q 012159          122 AFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLATAL  195 (470)
Q Consensus       122 ~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~  195 (470)
                      +-+.........+.+ ...+.+.+|+++..+|.+..+.-+.-++..|+.|.++||    +|||| .++++...++++.++
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l   96 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL   96 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence            333334444444444 444778889999999999999999999999999999996    68765 455566677776655


Q ss_pred             HHHhhhH------HHHHHHHHHHHHhhccCchhhHHHHhhhccC-ccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc--
Q 012159          196 LPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--  266 (470)
Q Consensus       196 ~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--  266 (470)
                      + +..+.      ...+.+..++..++.........++.+++.+ +++|.+..++...+..+|..+++.+...+....  
T Consensus        97 l-f~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~  175 (460)
T PRK11462         97 A-YSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG  175 (460)
T ss_pred             H-HhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5 32221      2345556666788888888888899999884 789999999999999999888877765554432  


Q ss_pred             -----CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHH
Q 012159          267 -----GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM  341 (470)
Q Consensus       267 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (470)
                           +|+....+.+++.++...+++...+++++.+.   ++..                   -...++..++||.++.+
T Consensus       176 ~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~---~~~~-------------------~~~~l~~~~~Nk~~~~l  233 (460)
T PRK11462        176 DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP---TTTS-------------------MREDLRDIWQNDQWRIV  233 (460)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc---cCCC-------------------HHHHHHHHhCChHHHHH
Confidence                 46766666666655554443332222111110   0000                   01124677889988877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       342 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      ....++..............|.+..+|. +...+.+.....++.+++.++++++.||+++|+...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~  297 (460)
T PRK11462        234 GLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFW  297 (460)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            6666666555555545555555544443 334456677788888999999999999999887543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.66  E-value=9e-14  Score=133.13  Aligned_cols=270  Identities=14%  Similarity=0.127  Sum_probs=198.6

Q ss_pred             HHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh----hcCcH-HHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLA  192 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~  192 (470)
                      -.++-+...........++.. +.+.+|+++..+|.++.+.-+--++..|+.|.++||    +||+| .++.+.+.+++.
T Consensus        17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~   96 (467)
T COG2211          17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV   96 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence            334444444555555555554 778899999999999999999999999999999995    67644 556666777777


Q ss_pred             HHHHHHhhh------HHHHHHHHHHHHHhhccCchhhHHHHhhhcc-CccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-
Q 012159          193 TALLPLLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-  264 (470)
Q Consensus       193 ~~~~~~~~~------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-  264 (470)
                      +.++ +.++      .....++..++.+++.........++.+++. +++||.+..++-+.+..+|..+...+.+.+.. 
T Consensus        97 ~~l~-F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~  175 (467)
T COG2211          97 AVLL-FITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL  175 (467)
T ss_pred             HHHH-HcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666 3333      2345667778889999999999999999988 56899999999999999987777666655553 


Q ss_pred             ------ccCchHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHH
Q 012159          265 ------NLGWESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA  337 (470)
Q Consensus       265 ------~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (470)
                            ..||+...++.+++.++..+.+++- +|+..+....+.....                  .....+..+++||+
T Consensus       176 ~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~------------------~~~~~~~~~~~Nrp  237 (467)
T COG2211         176 FGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKL------------------KLKDSFLLIFKNRP  237 (467)
T ss_pred             hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccc------------------cHHHHHHHHHccch
Confidence                  3467777777777776665555444 3333211111110000                  00112346789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      +...++..++...+..........|.+..+|.+.............+.+++.++..++.+|+|+|+....
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~  307 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI  307 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence            9999998888888888888888888888888888888888888888888889999999999999987765

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.65  E-value=1.5e-17  Score=165.72  Aligned_cols=287  Identities=16%  Similarity=0.215  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (470)
                      +..+++..++..+........+..+.++|+++..+.|++.+.+-++..+..++..++.+|..|-+++.++.++++++.++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            34455555566666666667788899999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHhh---h----------------------------------------------HHHHHHHHHHHHHhhccCchhhHHH
Q 012159          196 LPLLA---G----------------------------------------------FMPGLVLSRVLVGIGEGVSPSAATD  226 (470)
Q Consensus       196 ~~~~~---~----------------------------------------------~~~~l~~~~~l~G~~~~~~~~~~~~  226 (470)
                      +++-.   +                                              .+..++++.++.|+|....++...+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            64210   0                                              1235788899999999999999999


Q ss_pred             HhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc---------------------C-chHHHHHHHHHHHHHHH
Q 012159          227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---------------------G-WESVFYIFGLLGIAWFS  284 (470)
Q Consensus       227 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---------------------g-~~~~~~~~~~~~~~~~~  284 (470)
                      ++-|..++++-+..+|++.....+|.++|-++++.+...+                     | |...|++.+++.++..+
T Consensus       165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai  244 (539)
T PF03137_consen  165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI  244 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998876421                     3 66777778888877777


Q ss_pred             HHHhhccCCCCCCCCCCCccc-hhhhhhhhhhh-HHhh-------hccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 012159          285 GFKILQEGETSNGATLAPRSN-YINMKKSLSAS-LEEM-------GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (470)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (470)
                      .++.+|++-+...+....++. .....+...+. .++.       .-+.-....+++++||.+....+......+...++
T Consensus       245 pl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~  324 (539)
T PF03137_consen  245 PLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF  324 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            778887765544111111000 00000000000 0000       01112234678999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 012159          356 LSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~  402 (470)
                      .++.|.|++.+++.++.+++++.....+ ++++|.+++|++.+|++.+
T Consensus       325 ~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  325 ATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             ------------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            9999999999999999999888766665 6788999999999998754

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.63  E-value=8.6e-13  Score=125.36  Aligned_cols=177  Identities=18%  Similarity=0.288  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHhhhhhHHHh-HHhhhhhcC----CCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVA-IIPMSHRFG----WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIW  189 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~  189 (470)
                      +..++..-+..-+..+.+... .-++..+++    ++.+++.-+++.|..-.-+..+++|+++||+ |+|+++.++.+++
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            344444555555544444444 333445555    9999999899988888889999999999995 9999999999999


Q ss_pred             HHHHHHHHHhh-hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCcc--chhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          190 SLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       190 ~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      +++.++++... .....+++..++.++|.|..-+...+++.|.+|++  +|-..+++++.+.++|+.++|++.+++.+.+
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            99998886443 34567888888999999999999999999999765  4678889999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccC
Q 012159          267 GWESVFYIFGLLGIAWFSGFKILQEG  292 (470)
Q Consensus       267 g~~~~~~~~~~~~~~~~~~~~~~~~~  292 (470)
                      ||...|.+.++-..+.++.++..++.
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccch
Confidence            99999999998887777777666543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=6.3e-15  Score=144.54  Aligned_cols=159  Identities=19%  Similarity=0.254  Sum_probs=128.3

Q ss_pred             hHHHhHHhhhhhcCCCc--------hhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh--
Q 012159          132 NLSVAIIPMSHRFGWNS--------SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG--  201 (470)
Q Consensus       132 ~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--  201 (470)
                      ......+.+.++.|.++        ...+...++..+...++.++.|+++||+|+|+++.++.++.+++..+......  
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~  305 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY  305 (418)
T ss_pred             HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            34445566556666543        66799999999999999999999999999999999999888877655543222  


Q ss_pred             -HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHH-hhhhhHHHHHHhhHHhhhcc------cCchHHHH
Q 012159          202 -FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIEN------LGWESVFY  273 (470)
Q Consensus       202 -~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------~g~~~~~~  273 (470)
                       +++.+++.+++.|++.+...+....++.+++|+++|++++|+.+ ...++|.++||+++|++.++      +||+..|+
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence             23567778999999998888898999999999999999999997 67889999999999999987      46999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 012159          274 IFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       274 ~~~~~~~~~~~~~~~~~  290 (470)
                      +.+++.++..+..+++.
T Consensus       386 ~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       386 FFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88888766655544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.61  E-value=4.2e-13  Score=123.10  Aligned_cols=249  Identities=15%  Similarity=0.081  Sum_probs=175.8

Q ss_pred             hhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012159          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (470)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (470)
                      ..-...+++.-.+.+++|++..|++.++....+...+...+.|.++||+|||+..++.+++.++.++..  ..++++.++
T Consensus        48 ~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k--~~~~~~~L~  125 (354)
T PF05631_consen   48 AADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK--HSSNYPVLL  125 (354)
T ss_pred             HHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--hccccHHHH
Confidence            333445556555667899999999999999999999999999999999999999999999998888654  456679999


Q ss_pred             HHHHHHHhhccCchhhHHHHhhhc-----cCccchhhHHHHHH-hhhhhHHHHHHhhHHhhhcccCc--hHHHHHHHHHH
Q 012159          208 LSRVLVGIGEGVSPSAATDLIARS-----IPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGW--ESVFYIFGLLG  279 (470)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~-----~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~--~~~~~~~~~~~  279 (470)
                      ++|++.|++.+..+.+..++...-     +|++..+..++... ...++-.+++.+++.++.+..+.  ..+|....++.
T Consensus       126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l  205 (354)
T PF05631_consen  126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL  205 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            999999999999998888877533     33333444455444 33445566667777777776554  78888887777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          280 IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (470)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (470)
                      ++..++.....++...+..+..+..+.   .               ...++.+.+||+++.+.+...++-...+.+....
T Consensus       206 ~~~~~~I~~~W~ENyg~~~~~~~~~~~---~---------------~~a~~~i~~d~ril~LG~~qslFE~smy~FVflW  267 (354)
T PF05631_consen  206 AVAAVLILKTWPENYGDTSSSSSLSGS---F---------------REAWRAILSDPRILLLGLIQSLFEGSMYLFVFLW  267 (354)
T ss_pred             HHHHHHHHhcccccCCCcccccchHHH---H---------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHheeee
Confidence            666555443333322211111000000   0               0124677889999999999999988888877655


Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN  398 (470)
Q Consensus       360 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  398 (470)
                      ++-++.  +-.....|++++.+.++.++|+.+..++..+
T Consensus       268 tPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  268 TPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             eceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            555542  1123457899999999999999888766554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.60  E-value=6.5e-13  Score=127.57  Aligned_cols=250  Identities=17%  Similarity=0.174  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhh--cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcC-cHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLI  188 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~  188 (470)
                      +|+.+.+..+..++.....+++.+..-.+.++  .+.+.+..|++.++..++.+++++.+|++..|.+. |+.++.+.++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii  111 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI  111 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence            46788888888888888877777764444444  78888999999999999999999999999999986 8888888888


Q ss_pred             HHHHHHHHHH---hhh-HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc
Q 012159          189 WSLATALLPL---LAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (470)
Q Consensus       189 ~~~~~~~~~~---~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (470)
                      ..++.++...   .++ .-+.++++|++.|+|.+.. ...-+++++....++|.++++....+..+|.++||.+...+..
T Consensus       112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence            8888876622   234 5678999999999997654 6778899998877999999999999888888888877766543


Q ss_pred             cc--C-----------chHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHH
Q 012159          265 NL--G-----------WESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (470)
Q Consensus       265 ~~--g-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (470)
                      ..  |           +..+-|+.+++.++.++..++. +|..+....+..+.++     +   ...+....+..+..+ 
T Consensus       191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~d~-  261 (488)
T KOG2325|consen  191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE-----E---EKSDIEKVKKPKLDW-  261 (488)
T ss_pred             hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch-----h---hccchhhhccCChhH-
Confidence            11  1           3456677777776665554444 4433322221111110     0   000000001111111 


Q ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHH
Q 012159          331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW  376 (470)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  376 (470)
                           ...+.+.+..+...+......+..+......++++..++-.
T Consensus       262 -----~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~  302 (488)
T KOG2325|consen  262 -----VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVL  302 (488)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHH
Confidence                 22334445555555555555666667766677877665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.59  E-value=1.3e-13  Score=138.40  Aligned_cols=170  Identities=12%  Similarity=0.090  Sum_probs=126.7

Q ss_pred             HHhhhhhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH-HH-HhhhH
Q 012159          126 CNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LP-LLAGF  202 (470)
Q Consensus       126 ~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~-~~~~~  202 (470)
                      .....+....++|.+. +.+|.+..+.++..+...++..++.+++|+++||+|||+++.++.++..++... +. ...++
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344445555677654 567998888888888889999999999999999999999988876644433322 11 12334


Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHHHHHHHH
Q 012159          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIA  281 (470)
Q Consensus       203 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~  281 (470)
                      ...+++.+++.|++.+........++.+.+|++.|++++|+.+....+++.++|.+.+++.+..+ |+.++++..+.+++
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i  421 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI  421 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            56677788888887777777778888999999999999998555566777899999999887654 77777776666666


Q ss_pred             HHHHHHhhccCCCC
Q 012159          282 WFSGFKILQEGETS  295 (470)
Q Consensus       282 ~~~~~~~~~~~~~~  295 (470)
                      .++..++++|+++.
T Consensus       422 ~~~~~~~~pes~~~  435 (490)
T PRK10642        422 GLITGVTMKETANR  435 (490)
T ss_pred             HHHHHHHhccccCC
Confidence            66666777776654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.58  E-value=1.6e-13  Score=133.94  Aligned_cols=157  Identities=16%  Similarity=0.109  Sum_probs=125.4

Q ss_pred             hHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012159          132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (470)
Q Consensus       132 ~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (470)
                      .+....|. +.+++|.+..+.+++.+...++..++.+++|+++||+|+|+.+..+.+...+..... ...++.+.+++.+
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~  312 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM-LMAHSPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence            34445665 556789999999999888888888899999999999999998877665544443333 2345556677788


Q ss_pred             HHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhc
Q 012159          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       211 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      ++.+++.+...+....+..|.+| ++|++++++++....+|..++|.++|.+.+++||+..|++.+++.++.++..+..+
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            88888777777777788888888 56999999999999999999999999999999999999988888777777666654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.57  E-value=2.2e-13  Score=133.35  Aligned_cols=160  Identities=21%  Similarity=0.149  Sum_probs=130.2

Q ss_pred             hHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012159          132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (470)
Q Consensus       132 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (470)
                      ....+++.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++... .++.+.+++..+
T Consensus       234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  310 (399)
T PRK05122        234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL-APSPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            344445555555565  34567778888999999999999999999999998888877777766643 455567778889


Q ss_pred             HHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhcc
Q 012159          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (470)
                      +.|++.+...+.....+.+.+|+++|++++++++....+|..++|++.|.+.++.||++.|++.+++.++..+..+.+++
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998888888888899999999999999999999999999999999999999999999988887777666666655


Q ss_pred             CCC
Q 012159          292 GET  294 (470)
Q Consensus       292 ~~~  294 (470)
                      +++
T Consensus       391 ~~~  393 (399)
T PRK05122        391 RAP  393 (399)
T ss_pred             ccc
Confidence            443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.56  E-value=5.4e-14  Score=136.22  Aligned_cols=150  Identities=16%  Similarity=0.124  Sum_probs=125.4

Q ss_pred             HHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHH
Q 012159          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSRV  211 (470)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~  211 (470)
                      .....+.+.+++|.+..+.+++.++..++..++.++.|++.||+|||+.+.++.++.+++.+++..... ....+++..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            334455566788999999999999999999999999999999999999999888887777765543322 2233445677


Q ss_pred             HHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHH
Q 012159          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (470)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~  282 (470)
                      +.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.++|.+.++.||++.|++.+++.++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            78888888888888899999999999999999999999999999999999999999999999988776654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.56  E-value=2.9e-12  Score=119.51  Aligned_cols=241  Identities=19%  Similarity=0.197  Sum_probs=175.5

Q ss_pred             hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhc-----CcHHHHH-HHHHHHHHHHHHHH----hhh--------
Q 012159          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQT-GVLIWSLATALLPL----LAG--------  201 (470)
Q Consensus       140 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~-~~~~~~~~~~~~~~----~~~--------  201 (470)
                      +..|++++....+.+.++..+.. ...+.+|..+|+.+     ||..+++ +.++.+.+..+.+.    ...        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            56789999999999998888776 57999999999998     7766655 44444444333322    112        


Q ss_pred             H-H--HHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHH---H
Q 012159          202 F-M--PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI---F  275 (470)
Q Consensus       202 ~-~--~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~---~  275 (470)
                      . .  ....+...+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+.+.+.+.+......-+   .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            1 1  13455667889999999999999999999999999999999999999999999999999887764332222   3


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 012159          276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (470)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (470)
                      +++.++..++..+-.|++..+.....++++                 ......+++++.+|+...+.+..++...+++.-
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~-----------------~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~Q  227 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAAAERPR-----------------PPFREAWRQVWASPQARRFFVFLFLGTLAFFMQ  227 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccCCCCCC-----------------ccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhh
Confidence            333322222223323333222221111111                 001123567788899988988889999998888


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN  398 (470)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  398 (470)
                      ...+-+|--+.+|++..+...+......+..++....|++..|
T Consensus       228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~  270 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR  270 (403)
T ss_pred             HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999998774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.55  E-value=1.8e-13  Score=134.32  Aligned_cols=160  Identities=23%  Similarity=0.080  Sum_probs=127.5

Q ss_pred             hhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012159          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (470)
Q Consensus       130 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (470)
                      ........|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|+|+.+..+.+..+++.++.. ..++.+.+.+.
T Consensus       236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  314 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-AAPSFAGMLLA  314 (406)
T ss_pred             HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHH
Confidence            33444557777788899999999999999999999999999999999999998887666666555443 33444666677


Q ss_pred             HHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q 012159          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFKI  288 (470)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  288 (470)
                      .++.|++.+...+...+++.+.+|+++|++++|+.+....+|..+||.++|.+.++.+ |...+++.+...++..+..+.
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888889999999999999999999999999999999999999998754 555566555555555554444


Q ss_pred             hc
Q 012159          289 LQ  290 (470)
Q Consensus       289 ~~  290 (470)
                      +.
T Consensus       395 ~~  396 (406)
T PRK11551        395 LV  396 (406)
T ss_pred             Hh
Confidence            43

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.55  E-value=3.2e-13  Score=138.97  Aligned_cols=139  Identities=12%  Similarity=0.022  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhcc
Q 012159          153 LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (470)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~  232 (470)
                      +...+..++.+++.++.|+++||+|||++++++.++.+++.+++++. ++...+++.+++.|++.++.++...++++|++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-NSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44566778889999999999999999999999999988888777544 44466777788888888888999999999999


Q ss_pred             CccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccCC
Q 012159          233 PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE  293 (470)
Q Consensus       233 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (470)
                      |.+.|++++|+.+....+|.++||++++.+.+. +...+|++.+++.++..++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999988764 466788888877777776666776543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.55  E-value=3.9e-14  Score=116.47  Aligned_cols=134  Identities=29%  Similarity=0.508  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCc
Q 012159          155 QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL  234 (470)
Q Consensus       155 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~  234 (470)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++.. ..++.+.+.+.+++.|++.+...+....++.|.+|+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            3456778889999999999999999999998888877776664 445668888899999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q 012159          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      ++|++++++.+....+|..++|.+++.+.+..+|++.+++.+++.++..+..+.+
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999888776665555444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.54  E-value=4.2e-13  Score=130.90  Aligned_cols=152  Identities=18%  Similarity=0.094  Sum_probs=123.3

Q ss_pred             HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 012159          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (470)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  216 (470)
                      .|.+.+.+|.+..+.+++.+...++..++.++.|++.||+++|+.. .+..+..++..+.....++.+.++++.++.|++
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            4445666899999999999999999999999999999999987654 444444444433333455567777888899999


Q ss_pred             ccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhc
Q 012159          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      .+...+.....+.+..| ++|++++|+++....+|..+||+++|.+.+++|++..|++.+++.++..+......
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            88877888888888876 68999999999999999999999999999999999999999888877666555544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=4.9e-13  Score=129.62  Aligned_cols=153  Identities=16%  Similarity=0.159  Sum_probs=125.0

Q ss_pred             HhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012159          135 VAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV  213 (470)
Q Consensus       135 ~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  213 (470)
                      ...|. +.+++|.++.+.+++.+...+...++.++.|++.||+|+|+++.++.++..+...... ..++.+.+++.+++.
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  298 (375)
T TIGR00899       220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA-ADNSLWALLMLQLLN  298 (375)
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34444 5577899999999998888888888899999999999999998887766555444432 345557777788899


Q ss_pred             HhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q 012159          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      |++.+...+....++.|..| +++++++++++....+|..++|.++|.+.+..||+..|++.+++.++..+....+
T Consensus       299 g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            99888888888888999887 5677999999999999999999999999999999999999888877766665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.53  E-value=7.4e-14  Score=137.58  Aligned_cols=148  Identities=12%  Similarity=0.047  Sum_probs=124.3

Q ss_pred             hcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchh
Q 012159          143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPS  222 (470)
Q Consensus       143 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~  222 (470)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+ ..++.+.+++.+++.|++.+...+
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHH
Confidence            3466778889999999999999999999999999999999998888888776664 445567788889999998888778


Q ss_pred             hHHHHhhhccCccchhhHHHH-HHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhcc
Q 012159          223 AATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       223 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (470)
                      ....++.+.+|++.++...+. ++....+|.+++|+++|++.+..||+..|++.+++.++..++.+...+
T Consensus       335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            888899999998888887765 677788999999999999999999999999988887666555544433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.53  E-value=4.6e-13  Score=125.71  Aligned_cols=178  Identities=17%  Similarity=0.142  Sum_probs=149.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +++++..+....+.....+..+++.-|.+.+..|++...++++..++.++..++.++.|++.|| +.|+.+....++.++
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~  288 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLAL  288 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHH
Confidence            3455555555555555666777777888999999999999999999999999999999999999 999999988888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  271 (470)
                      ..+.+.+..++.+..++.-++.|+............+++ .-++.+..+.+++....++|..+|..++|.+.+++|+...
T Consensus       289 ~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~  367 (394)
T COG2814         289 ALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAAT  367 (394)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            887777777777777777788888888777777777777 4458999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 012159          272 FYIFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~  291 (470)
                      .++.+++.++..+..+...+
T Consensus       368 ~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         368 GWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999988877766655543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.53  E-value=1.4e-13  Score=135.03  Aligned_cols=159  Identities=19%  Similarity=0.159  Sum_probs=126.5

Q ss_pred             hhHHHhHHhhhhhcCCCch----hhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 012159          131 VNLSVAIIPMSHRFGWNSS----VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL  206 (470)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (470)
                      ....+.++.+..+.+.+..    ..+.+.++..++..++.+..|+++||+|||+.+..+.++.+++.+... ..++.+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  314 (408)
T PRK09874        236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS-FVQTPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HhccHHHH
Confidence            3344445554444333322    345666777888889999999999999999999988877766665553 33455777


Q ss_pred             HHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 012159          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  286 (470)
                      ++.+++.|++.+...+...+.+.+..+++++|+.+++++....+|..+||.++|.+.+..||++.|++.+++.++..+..
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999989999999999999999999999999999999999999999998887766655


Q ss_pred             Hhhc
Q 012159          287 KILQ  290 (470)
Q Consensus       287 ~~~~  290 (470)
                      +...
T Consensus       395 ~~~~  398 (408)
T PRK09874        395 WNSL  398 (408)
T ss_pred             HHHH
Confidence            4433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.53  E-value=5.1e-13  Score=129.84  Aligned_cols=162  Identities=16%  Similarity=0.017  Sum_probs=136.6

Q ss_pred             HHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Q 012159          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (470)
                      +..++.......+....|.+.+++|.+..++|++.++..++..+..++.+++.||+|+|+.+.++.++.++...+.+ ..
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~  290 (382)
T TIGR00902       212 AAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG-AI  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH-hH
Confidence            33444444455555566776678999999999999999999999999999999999999999999999888887775 46


Q ss_pred             hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHH-hhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHH
Q 012159          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (470)
Q Consensus       201 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  279 (470)
                      ++.+.+++..++.|++.+...+....++.+. |+++|++.+++++ ...++|..+||.++|++.+++|+ ..|++.+++.
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~  368 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIA  368 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHH
Confidence            6778888899999999999999999999998 8899999999986 56789999999999999999986 6788777777


Q ss_pred             HHHHHH
Q 012159          280 IAWFSG  285 (470)
Q Consensus       280 ~~~~~~  285 (470)
                      ++..+.
T Consensus       369 ~~~~~~  374 (382)
T TIGR00902       369 AAAFFL  374 (382)
T ss_pred             HHHHHH
Confidence            655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1e-13  Score=128.52  Aligned_cols=180  Identities=18%  Similarity=0.105  Sum_probs=145.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh--cCcHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLI  188 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~  188 (470)
                      +.+.++.++++.++.++.+..+.-..|. +.|..|++...+++..+.+-++.+.+.+++|+++||+  |||....+.+.+
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            4577889999999999999999988887 6677899999999999999999999999999999996  677665544433


Q ss_pred             HHHHHHHHHHhhh--HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhh-HHHHHHhhHHhhhcc
Q 012159          189 WSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIEN  265 (470)
Q Consensus       189 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~  265 (470)
                      ....+++.....+  ++++..++.++.|+..-+..-.......|..|++--|.+.|+...+..+ |.+.+....|++.|.
T Consensus       330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~  409 (448)
T COG2271         330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT  409 (448)
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence            3333333323333  4577788888889987777777777788999999999999999999999 999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHhhcc
Q 012159          266 LGWESVFYIFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (470)
                      +||...|++..+.+++..+.+..+..
T Consensus       410 ~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         410 WGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988877666555544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.52  E-value=7.9e-13  Score=126.63  Aligned_cols=165  Identities=28%  Similarity=0.356  Sum_probs=142.0

Q ss_pred             HHHHHhhhhhHHHhHHhhhhhc-CCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcH-HHHHHHHHHHHHHHHHHHhh
Q 012159          123 FVICNMDKVNLSVAIIPMSHRF-GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-VLQTGVLIWSLATALLPLLA  200 (470)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~  200 (470)
                      .+.............|.+.++. |.+..+.++..+...++..++.++.|++.||+|+|+ .+..+..+..++.+... ..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  262 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LA  262 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hh
Confidence            3344444555556666655554 999999999999999999999999999999999999 99998888888877764 44


Q ss_pred             hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHH
Q 012159          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI  280 (470)
Q Consensus       201 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  280 (470)
                      ++.+.+++..++.|++.+...+...+++.+..|+++|++.+++.+....+|..++|.+.+.+.+..+|++.+++.+++.+
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            44678889999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHh
Q 012159          281 AWFSGFKI  288 (470)
Q Consensus       281 ~~~~~~~~  288 (470)
                      +..+..+.
T Consensus       343 i~~i~~~~  350 (352)
T cd06174         343 LAALLLLL  350 (352)
T ss_pred             HHHHHhee
Confidence            77665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.52  E-value=4.6e-13  Score=133.67  Aligned_cols=174  Identities=15%  Similarity=0.068  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (470)
                      ++.+++..++............|. +.+++|++..+.++..+...++..++.+++|+++||+|+|+.+.....+..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            444455555555555556666776 5567999999999999999999999999999999999999877665444333322


Q ss_pred             HHH-HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhh-HHHHHHhhHHhhhc--------
Q 012159          195 LLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIE--------  264 (470)
Q Consensus       195 ~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~--------  264 (470)
                      +.. ...++.+.+.+.+++.|++.............|.+|++.||++.|+.+...++ |..++|.+.|++.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            221 12334455667777788654443333446777999999999999999998886 77999999999999        


Q ss_pred             ----ccCchHHHHHHHHHHHHHHHHHHhh
Q 012159          265 ----NLGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       265 ----~~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                          ..||+..|++.++..++..+..+++
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                5789999999877777665555544

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=1.1e-12  Score=128.00  Aligned_cols=155  Identities=20%  Similarity=0.194  Sum_probs=127.7

Q ss_pred             hHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012159          132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (470)
Q Consensus       132 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (470)
                      ....+.+.+.++.|.+.  .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++.. ..++.+.+++..+
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  310 (392)
T PRK12382        234 VIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW-LAPTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence            34445555555666543  56667778888899999999999999999999988888777776654 3455567778889


Q ss_pred             HHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q 012159          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      +.|++.+...+...+.+.+.+|+++|++++|+++....+|..+||.++|++.++.||++.|++.+++.++..+..+..
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999888888888999999999999999999999999999999999999999999999999988877766655544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.50  E-value=1e-12  Score=128.12  Aligned_cols=168  Identities=14%  Similarity=0.101  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcH--HHHH------HHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK--VLQT------GVLI  188 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~------~~~~  188 (470)
                      ..++..++.......+....|. +.+++|.+..+.+++.+...++..++.++.|+++||++||+  ....      +.++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV  298 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence            3444455555555556666666 45668999999999999999999999999999999999996  1111      1111


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-
Q 012159          189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-  267 (470)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  267 (470)
                      .++...... ..++.+..+...++.+++.+ ..+...+++.|.+|+++|++++|+.+....+|..++|.+.|.+.+..| 
T Consensus       299 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~  376 (399)
T TIGR00893       299 LSLLMFATN-YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS  376 (399)
T ss_pred             HHHHHHHhc-cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence            111111110 11232333333444444444 788999999999999999999999999999999999999999999988 


Q ss_pred             chHHHHHHHHHHHHHHHHHH
Q 012159          268 WESVFYIFGLLGIAWFSGFK  287 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~  287 (470)
                      |++.|++.+++.++..+..+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       377 FAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            99999988887766655443

>PRK03699 putative transporter; Provisional

Probab=99.50  E-value=9.9e-13  Score=128.40  Aligned_cols=174  Identities=13%  Similarity=0.172  Sum_probs=134.3

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (470)
                      +.+..++.......+..+.|.+. +++|++..+.+++.+.+.++..++.++.|+++||+++|+++.....+.++...+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~  289 (394)
T PRK03699        210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence            33344444444445556677655 67899999999999999999999999999999999999998887766655554443


Q ss_pred             HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHH
Q 012159          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (470)
Q Consensus       198 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  277 (470)
                       ..++.+.+.+..++.|++.+..++...+...+..+ +++++..+.......+|..++|.+.|++.+..|++..+++.++
T Consensus       290 -~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~  367 (394)
T PRK03699        290 -NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANG  367 (394)
T ss_pred             -HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHH
Confidence             34444556667788888888788887878787776 5577888998889999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhccCCC
Q 012159          278 LGIAWFSGFKILQEGET  294 (470)
Q Consensus       278 ~~~~~~~~~~~~~~~~~  294 (470)
                      +.++..+.+..+.+.++
T Consensus       368 ~~~~~~~~~~~~~~~~~  384 (394)
T PRK03699        368 LYAVVFVMCILLGFVSK  384 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            87776665555554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.50  E-value=1.5e-12  Score=126.53  Aligned_cols=153  Identities=15%  Similarity=0.138  Sum_probs=125.2

Q ss_pred             HHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012159          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (470)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  212 (470)
                      ...++|.+.++.|.+..+.+++.+...++..+++++.|++.||+|+|+++..+.++.+++.+...   .. ...+...++
T Consensus       219 ~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~l  294 (381)
T PRK03633        219 LYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQ-AAMAPALFI  294 (381)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hh-HHHHHHHHH
Confidence            34456777777899999999999999999999999999999999999999888777766654432   22 233456677


Q ss_pred             HHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q 012159          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      .|++.....|...+.+.+..|+++++...+.++...++|.++||.++|++.+++||++.|++.+.+.++..+..+..
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            78877777899999999999888888888888889999999999999999999999999999888877665544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.50  E-value=5.4e-13  Score=131.32  Aligned_cols=158  Identities=20%  Similarity=0.122  Sum_probs=129.7

Q ss_pred             HHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012159          133 LSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (470)
Q Consensus       133 ~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (470)
                      +....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++.. ..++.+...++.+
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  320 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-LMPMWILAVLCLA  320 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-ccchHHHHHHHHH
Confidence            44456666555 899999999999999999999999999999998888888888777777765553 4555566777888


Q ss_pred             HHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHH-HHHhhc
Q 012159          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS-GFKILQ  290 (470)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~  290 (470)
                      +.|++.+...+...+++.+..|++.||+++|+++....+|..+||.+.|.+.+.+|++..+++.+++.++..+ ....++
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            8899888777888889999999999999999999999999999999999999999999888888776655443 434444


Q ss_pred             c
Q 012159          291 E  291 (470)
Q Consensus       291 ~  291 (470)
                      +
T Consensus       401 ~  401 (417)
T PRK10489        401 E  401 (417)
T ss_pred             c
Confidence            4

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.50  E-value=2.9e-12  Score=124.93  Aligned_cols=164  Identities=14%  Similarity=0.037  Sum_probs=125.6

Q ss_pred             HHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHH
Q 012159          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP  204 (470)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  204 (470)
                      +............|.+.+++|.+..+.+...+++.++..++.++.|++.||+|||+.+.++..+.+++..++.....+..
T Consensus       216 ~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  295 (393)
T PRK09705        216 LINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP  295 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH
Confidence            33444445556677766678999999999999999999999999999999999999998887776666554433333322


Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhhccC-ccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHHHHHHHHH
Q 012159          205 GLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAW  282 (470)
Q Consensus       205 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~  282 (470)
                      .+  ..++.|++.+...+.......+..+ ++++++.+|+.+....++..++|.+.|++.++.| |...|++.++.+++.
T Consensus       296 ~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (393)
T PRK09705        296 VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL  373 (393)
T ss_pred             HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            22  2345688888888887777777774 5789999999999999999999999999999886 777788777766665


Q ss_pred             HHHHHhhc
Q 012159          283 FSGFKILQ  290 (470)
Q Consensus       283 ~~~~~~~~  290 (470)
                      .++.+.+.
T Consensus       374 ~~~~~~~~  381 (393)
T PRK09705        374 MIITLRFA  381 (393)
T ss_pred             HHHHHHhc
Confidence            55544443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.49  E-value=1.2e-12  Score=129.53  Aligned_cols=173  Identities=14%  Similarity=0.020  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh--cCcHHH-HHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVL-QTGVLIWSLATA  194 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~~  194 (470)
                      +.+..++.......+...+|.+. +++|++..+.+...+++.++..++.++.|+++||+  ++|+.. ....+...+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~  327 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG  327 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHH
Confidence            33444444444455555666654 67899999999999999999999999999999998  333332 221111111111


Q ss_pred             HHH-HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHH
Q 012159          195 LLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (470)
Q Consensus       195 ~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  273 (470)
                      ... ....+.....+..+..|++...........+.+.+|+++|++++|+.+....+|.+++|.+.|++.++.||+..|+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~  407 (434)
T PRK11663        328 SLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV  407 (434)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence            111 1112223333344444544332233345567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 012159          274 IFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~  291 (470)
                      +.++++++..+..+...+
T Consensus       408 ~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        408 VISIAAGISALLLLPFLN  425 (434)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            998888776665554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.49  E-value=6e-12  Score=126.02  Aligned_cols=157  Identities=12%  Similarity=0.100  Sum_probs=120.6

Q ss_pred             hHHhhhhhcCCCchhhHHHHH-HHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHH
Q 012159          136 AIIPMSHRFGWNSSVAGLVQS-SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRV  211 (470)
Q Consensus       136 ~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~  211 (470)
                      ..|.+.+++|++..+++++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+++   +...++.+.+.+..+
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            344556779999999999974 6668999999999999999999988777665544433222   122233344444556


Q ss_pred             HHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhcc
Q 012159          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (470)
                      +..++.+...+...++..+..+++.+++.+++.+...++|..+++.++|++.+.+||+..|.+.++++++..+....+++
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65555555567778888899998999999999999999999999999999999999999999988888877776666654


Q ss_pred             C
Q 012159          292 G  292 (470)
Q Consensus       292 ~  292 (470)
                      +
T Consensus       405 ~  405 (491)
T PRK11010        405 T  405 (491)
T ss_pred             c
Confidence            3

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.48  E-value=1.3e-12  Score=131.62  Aligned_cols=148  Identities=16%  Similarity=0.154  Sum_probs=115.6

Q ss_pred             HHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Q 012159          133 LSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSR  210 (470)
Q Consensus       133 ~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~  210 (470)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|+|+++.++.++.++..++.... ..+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445667765 5899999999999999999999999999999999999999888776655554433222 23333444444


Q ss_pred             HHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHH
Q 012159          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI  280 (470)
Q Consensus       211 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  280 (470)
                      ++.++......+...+++.+.+|+++|++++|+.+....+|..+||+++|.+.+++||+..+...++...
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~  443 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT  443 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            5444443444567778899999999999999999999999999999999999999999988876655443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.48  E-value=3.7e-13  Score=131.17  Aligned_cols=163  Identities=15%  Similarity=0.132  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH-HH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT-AL  195 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~  195 (470)
                      ...+..++............|.+. +++|.+..+.+.+.+...++..++.++.|+++||+|||+.+.....+..+.. .+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  302 (394)
T TIGR00883       223 LGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL  302 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            333444444444555556666654 7789999999999999999999999999999999999998776554443332 12


Q ss_pred             HHHh--hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHH-HHhhhhhHHHHHHhhHHhhhcccC-chHH
Q 012159          196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLG-WESV  271 (470)
Q Consensus       196 ~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g-~~~~  271 (470)
                      ....  .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++ ++....+|..++|.++|.+.++.| |++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~  382 (394)
T TIGR00883       303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI  382 (394)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhH
Confidence            1112  23446666777888988888889999999999999999999998 456667899999999999999988 8887


Q ss_pred             HHHHHHHHH
Q 012159          272 FYIFGLLGI  280 (470)
Q Consensus       272 ~~~~~~~~~  280 (470)
                      ++...+..+
T Consensus       383 ~~~~~~~~l  391 (394)
T TIGR00883       383 GYYLAALAL  391 (394)
T ss_pred             HHHHHHHHH
Confidence            777665444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.47  E-value=4.3e-13  Score=133.17  Aligned_cols=164  Identities=18%  Similarity=0.161  Sum_probs=127.2

Q ss_pred             HHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh--cCcHHHHHH--HHHHHHHHHH
Q 012159          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTG--VLIWSLATAL  195 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~--~~~~~~~~~~  195 (470)
                      .+..++..........++|.+.+++|.+..+.+++.++..++..+++++.|++.||.  ++|+...++  .++.+++.++
T Consensus       247 ~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll  326 (455)
T TIGR00892       247 LSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL  326 (455)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455566776778899999999999999999999999999999974  334333332  2333333333


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc-CchHHHHH
Q 012159          196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYI  274 (470)
Q Consensus       196 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~  274 (470)
                      + ...++++.+++.+++.|++.+...+...+++.+.+|++++++.+|+++....+|.++||.++|.+.+.. +|++.|++
T Consensus       327 ~-~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~  405 (455)
T TIGR00892       327 C-ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA  405 (455)
T ss_pred             H-HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence            3 244566778888999999999999999999999999999999999999999999999999999999887 49999999


Q ss_pred             HHHHHHHHHH
Q 012159          275 FGLLGIAWFS  284 (470)
Q Consensus       275 ~~~~~~~~~~  284 (470)
                      .+++.++..+
T Consensus       406 ~~~~~li~~~  415 (455)
T TIGR00892       406 SGSIVVSAGL  415 (455)
T ss_pred             hhHHHHHHHH
Confidence            8877655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.47  E-value=1.9e-12  Score=129.58  Aligned_cols=177  Identities=16%  Similarity=0.103  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      ++.+...++..+.............|.+.+++|.+..+.++......++..++.+++|+++||+|||+.+.++.++.+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            44444555555555555555666778888889999988999999999999999999999999999999999887777776


Q ss_pred             HHHHHHhh----h------HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhh
Q 012159          193 TALLPLLA----G------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (470)
Q Consensus       193 ~~~~~~~~----~------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (470)
                      .+++....    +      ....+....++.+.......+....++.|.+|+++|++++++.+....+|.+++|.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65554211    1      2222233333333333334466677889999999999999999999999999999999999


Q ss_pred             hcccCchHHHHHHHHHHHHHHHHHHhh
Q 012159          263 IENLGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       263 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      .++.+|++.|++.++++++..++.+++
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHhee
Confidence            999999999999888877766655444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.47  E-value=9.7e-13  Score=130.80  Aligned_cols=175  Identities=13%  Similarity=0.026  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh--cCcHHHH-HHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQ-TGVLIWSLAT  193 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~-~~~~~~~~~~  193 (470)
                      ...+..++..........++|.+. ++.|++..+.+++..++.++..++.+++|+++||+  +||+... ....+..++.
T Consensus       257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~  336 (452)
T PRK11273        257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  336 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            334444444444445566777755 45789999999999999999999999999999999  5554332 2222223332


Q ss_pred             HHHHHh-hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHH-HHhhHHhhhcccCchHH
Q 012159          194 ALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA-GLLLAPPIIENLGWESV  271 (470)
Q Consensus       194 ~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~g~~~~  271 (470)
                      +++... ..+.+..++..++.|.+..........+..|.+|+++||+++|+.+....+|+.+ +|.++|++.++.||+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~  416 (452)
T PRK11273        337 IVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG  416 (452)
T ss_pred             HHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHH
Confidence            222111 2233334444555555433333334456779999999999999999888887654 79999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccC
Q 012159          272 FYIFGLLGIAWFSGFKILQEG  292 (470)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~  292 (470)
                      |++.++++++.++....+...
T Consensus       417 f~~~~~~~~~~~~~~~~~~~~  437 (452)
T PRK11273        417 FMVMIGGSILAVILLIVVMIG  437 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            999888777665555544443

>TIGR00897 2A0118 polyol permease family

Probab=99.45  E-value=4.7e-12  Score=123.94  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=126.1

Q ss_pred             HHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHH-HHHHHHHHHHHHHHHh
Q 012159          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATALLPLL  199 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~  199 (470)
                      +..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+...
T Consensus       229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~  308 (402)
T TIGR00897       229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI  308 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555666778877889999999999999999999999999999999999988764 3333333332222211


Q ss_pred             ----hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHH
Q 012159          200 ----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (470)
Q Consensus       200 ----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  275 (470)
                          .++.+..++..++.|++.+...+ ....+.+..| ++|++++|+.+....+|..++|.+++.+.+..||...+++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~  386 (402)
T TIGR00897       309 PQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF  386 (402)
T ss_pred             HHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence                23445666778888888776544 4556667655 68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 012159          276 GLLGIAWFSGFKIL  289 (470)
Q Consensus       276 ~~~~~~~~~~~~~~  289 (470)
                      +++.++..+...++
T Consensus       387 a~~~~i~~~~~~~~  400 (402)
T TIGR00897       387 AALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98877766655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=99.45  E-value=3.9e-12  Score=125.80  Aligned_cols=163  Identities=14%  Similarity=0.116  Sum_probs=117.8

Q ss_pred             hhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh---hhHHH
Q 012159          129 DKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL---AGFMP  204 (470)
Q Consensus       129 ~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~  204 (470)
                      .........|. +.+++|.+......+..+..+...++.+++|+++||+|||+++..+.++..++.+.+...   .+..+
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFW  344 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence            33334444454 556788888776666666777778889999999999999999888766554443322111   12334


Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHh-hhhhHHHHHHhhHHhhhccc--CchHHHHHHHHHHHH
Q 012159          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIA  281 (470)
Q Consensus       205 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~--g~~~~~~~~~~~~~~  281 (470)
                      .+++..++.+++.+...+...+++.|.+|.+.|+.+.++.+. +..+|+.++|.+.+++.+..  +|+..+.+.+++.++
T Consensus       345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i  424 (438)
T PRK09952        345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLI  424 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            444556666788777788889999999999999999998544 45589999999999998754  488888887777777


Q ss_pred             HHHHHHhhcc
Q 012159          282 WFSGFKILQE  291 (470)
Q Consensus       282 ~~~~~~~~~~  291 (470)
                      ..+..+.+++
T Consensus       425 ~~v~~~~~~~  434 (438)
T PRK09952        425 SAMTALLMKD  434 (438)
T ss_pred             HHHHHHHccc
Confidence            7666665544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.45  E-value=1e-12  Score=128.80  Aligned_cols=142  Identities=11%  Similarity=0.116  Sum_probs=114.8

Q ss_pred             HHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012159          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (470)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (470)
                      .....|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++.........++.+.+.+..+
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF  336 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            3334454 556789999999999999999999999999999999999999888776653333322223344455666667


Q ss_pred             HHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHH
Q 012159          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYI  274 (470)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~  274 (470)
                      +.|++.+...+....++.|.+|+++|++++|+.+....+|..++|+++|++.++.| |+..+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            77777777778888999999999999999999999999999999999999999988 8766655

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.41  E-value=3.4e-11  Score=117.40  Aligned_cols=309  Identities=18%  Similarity=0.154  Sum_probs=201.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCch-hhHHHHHHH----HHHHHHhhhhhHHHhhhhcCcHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSF----FWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~~----~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (470)
                      .+......++-.+...+.........+.....++.+.. ..+......    .+...+.++..|.++||+|||..+....
T Consensus        20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~   99 (463)
T KOG2816|consen   20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL   99 (463)
T ss_pred             hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence            34556666666666666666666666665555543322 223333333    6788899999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--ccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc
Q 012159          187 LIWSLATALLPLLAGFMPGLVLSRVLVGIG--EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (470)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (470)
                      ....+..+... +.. +|.++    +.|+.  .+.......++++|....++|...+|+.+.....+..++|.+++.+..
T Consensus       100 ~~~~l~~~~~~-~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  100 FGTILPALCLL-FQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHHhHHHHH-HHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            88777665553 333 33333    44443  235567888999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHH
Q 012159          265 NLGWESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (470)
Q Consensus       265 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (470)
                      ..|...+|.+..+..++..+.. .+++|+..+++.......+ ....+   ....+..+.  .......-.+|..+.+++
T Consensus       174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~-~~~~~---~~~~~~~~~--~~~~~~~~~~r~~l~l~l  247 (463)
T KOG2816|consen  174 FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE-LTPGS---LDSSHVADA--FQSLTKVGPDRLLLLLLL  247 (463)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc-cCCCc---ccchhhhhh--hhhhcccCCCccchHHHH
Confidence            9999999999888877665544 4455543333222100000 00000   000000000  000111223455555555


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcch--------------
Q 012159          344 AHFCGSWGHYTCLS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAA-QFADNLIATGVETT--------------  407 (470)
Q Consensus       344 ~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~--------------  407 (470)
                      ..++.......-.. .++.|+...+|++..+.+.+.+..+....++.++.. .+...++.++....              
T Consensus       248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af  327 (463)
T KOG2816|consen  248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF  327 (463)
T ss_pred             HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH
Confidence            55555444433222 446777778899999999888888888888887776 66666777663332              


Q ss_pred             ----------------------------------------HHHHHHhhhhHHHHHHHHHHHhhcc
Q 012159          408 ----------------------------------------MGITNTVGAVPGIVGVALTGYLLDS  432 (470)
Q Consensus       408 ----------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~  432 (470)
                                                              .+++..+..+..+++|.+.+.+...
T Consensus       328 ~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  328 ATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             hccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence                                                    7778888888888888888877543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.41  E-value=1.5e-11  Score=121.13  Aligned_cols=179  Identities=17%  Similarity=0.121  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHH-hhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCc--HHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICN-MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIWS  190 (470)
Q Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~  190 (470)
                      +.+....+++++.. ...+++........+++|++..+...+..+..+..+++.+++|++.||+|.|  +++.++.+++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            34444445544433 3344444445556679999999999999999999999999999999999999  88888877765


Q ss_pred             HHHHHHHH-------hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh
Q 012159          191 LATALLPL-------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (470)
Q Consensus       191 ~~~~~~~~-------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (470)
                      +..+...+       -..+.+.+++..++.|++.|..++...++.+++.|+++.+..+|++.........+||++.|.+.
T Consensus       361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~  440 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT  440 (477)
T ss_pred             HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433322       03445789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC-chHHHHHHHHHHHHHHHHHHhhccC
Q 012159          264 ENLG-WESVFYIFGLLGIAWFSGFKILQEG  292 (470)
Q Consensus       264 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  292 (470)
                      +..| .|+.++...++.++.+++.+.++.+
T Consensus       441 ~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  441 DATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            9887 8899888888887777777666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.39  E-value=2.8e-11  Score=118.67  Aligned_cols=263  Identities=19%  Similarity=0.171  Sum_probs=169.8

Q ss_pred             HHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhc-----CcHHHHHHHHHHHHHHHHHHHhhh---HHHH
Q 012159          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLIWSLATALLPLLAG---FMPG  205 (470)
Q Consensus       134 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~~~~~~~~~~~~~---~~~~  205 (470)
                      ....+.+.+++|+++.+...+.++..+... ..++.|.++|-+.     ||..++++.++.+++.+.++..+.   +...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            344677889999999999999888888875 5688999999763     555666666665454444443332   4456


Q ss_pred             HHHHHHHHHhhccCchhhHHHHhhhcc--CccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHH
Q 012159          206 LVLSRVLVGIGEGVSPSAATDLIARSI--PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (470)
Q Consensus       206 l~~~~~l~G~~~~~~~~~~~~~i~~~~--~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (470)
                      ..+..++..+|.........+++.|..  .++.+|...+.......+|.+++..++|.+.+..++++.|.+.+++.++..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            667778888898999999999999987  334478888899999999999999999999999999999999988877766


Q ss_pred             HHHHhhccCCCCCCCCCC---CccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHH-HHHHHHHHHHHHHHHH
Q 012159          284 SGFKILQEGETSNGATLA---PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWL  359 (470)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~  359 (470)
                      +..+++.++++..+....   .++.........++.         .....+.++.|.+|...+ ..++............
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~  239 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQ---------LSELWRALQQRAIWQPILFFIFFFNLPPSISSASS  239 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccE
Confidence            655555554222211110   000000000000000         112356777788877666 3333222211111100


Q ss_pred             HHHHHHHhC---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012159          360 PTYFSEELS---LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (470)
Q Consensus       360 ~~~~~~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (470)
                      -.+..+..+   +++...+.+..+..++.++|..+......+...|+...
T Consensus       240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~  289 (433)
T PF03092_consen  240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFV  289 (433)
T ss_pred             EEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            011223345   88888888887777888888877776666655554433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.39  E-value=1.8e-11  Score=119.07  Aligned_cols=151  Identities=17%  Similarity=0.106  Sum_probs=122.4

Q ss_pred             hhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012159          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (470)
Q Consensus       130 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (470)
                      ...+....|.+.++.|.+..+.|.+.++..++..+..++.|++.||+|+|+.+..+.++.++..++.+ ..++.+.+++.
T Consensus       221 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  299 (382)
T PRK11128        221 HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-STTALPWLIVI  299 (382)
T ss_pred             hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence            33344455565577999999999999999999999999999999999999999999888887766654 45666788889


Q ss_pred             HHHHHhhccCchhhHHHHhhhccCccchhhHHHHHH-hhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHH
Q 012159          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (470)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (470)
                      .++.|++.+...+....++.+. +++++++..++++ ....+|..+||.++|.+.+++|+ ..++..+++.++.+
T Consensus       300 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        300 QILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            9999999998888888888886 5567789999876 55678889999999999999987 46666666655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.39  E-value=5.1e-12  Score=127.35  Aligned_cols=171  Identities=12%  Similarity=0.058  Sum_probs=112.6

Q ss_pred             HHHHHhhhhhHHHhHHhhhhhcCCCchhhHH------------HHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGL------------VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      .+...+..+......|.+.++.|.+....+.            ...+..++..++.+++++++||+|||++++++.++.+
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~  376 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILT  376 (502)
T ss_pred             HHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Confidence            3333333334444577777788876543211            2334445666788899999999999999988887777


Q ss_pred             HHHHHHHHhhh---HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc--
Q 012159          191 LATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--  265 (470)
Q Consensus       191 ~~~~~~~~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--  265 (470)
                      ++.+++.....   ....+....+...++.....+....+.+|.+|.+.|++++|+.+....+|.+++|.+.+++.+.  
T Consensus       377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  456 (502)
T TIGR00887       377 VLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGD  456 (502)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccc
Confidence            66655543221   1111111112222222334456677889999999999999999999999999999999998873  


Q ss_pred             --------cCchHHHHHHHHHHHHHHHHHHhhccCC
Q 012159          266 --------LGWESVFYIFGLLGIAWFSGFKILQEGE  293 (470)
Q Consensus       266 --------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (470)
                              .++...|++.+++.++..+..+++||++
T Consensus       457 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       457 PTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence                    3456678888777766655555555543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.38  E-value=7.5e-12  Score=116.40  Aligned_cols=179  Identities=22%  Similarity=0.196  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      +..+.+++.++..+.....++..+|. +.++||.+..+.|.....+.+...+..+.+|+++||+|.+|++.+....++++
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~  297 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA  297 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence            33455666777777777778888877 67889999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHhh------hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          193 TALLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       193 ~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      ..+.....      .+....+...+..+++.|........++..+++ ++-|.+.|+....+++|+..-|...+...+..
T Consensus       298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t  376 (417)
T COG2223         298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT  376 (417)
T ss_pred             HHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence            87775544      333444444444455555555566788888887 68999999999999999999999999999988


Q ss_pred             C-chHHHHHHHHHHHHHHHHHHhhccCC
Q 012159          267 G-WESVFYIFGLLGIAWFSGFKILQEGE  293 (470)
Q Consensus       267 g-~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (470)
                      | +...|++...+.+++.+..+....++
T Consensus       377 g~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         377 GSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8 99999999988888777666655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.38  E-value=3.9e-12  Score=122.62  Aligned_cols=133  Identities=23%  Similarity=0.328  Sum_probs=115.4

Q ss_pred             HhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012159          135 VAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV  213 (470)
Q Consensus       135 ~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  213 (470)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||++||+.+..+.++.+++..+.....++.+.+++..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            556776554 8999999999999999999999999999999999999998887777766665543332367788889999


Q ss_pred             HhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC
Q 012159          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (470)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (470)
                      |++.+...+...+++.|..|+++|++++|+.+....+|..++|.++|.+.+++|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999988654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.37  E-value=1.7e-11  Score=122.14  Aligned_cols=157  Identities=20%  Similarity=0.135  Sum_probs=135.0

Q ss_pred             hhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012159          131 VNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (470)
Q Consensus       131 ~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (470)
                      ..+...+|.+. +.+|.++..+|++.+++++|.+++.++.+++.+|+++++.+..+.++++++.+.++ ..++.+..++.
T Consensus       235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la-l~~~~~~~~~~  313 (524)
T PF05977_consen  235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA-LSPSFWLALIA  313 (524)
T ss_pred             hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-cchHHHHHHHH
Confidence            33444577754 56899999999999999999999999999999999999999999888888877775 45566788888


Q ss_pred             HHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHh
Q 012159          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (470)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (470)
                      .++.|++.........+.+....|++.|||++++++.....+..+|.++.|.+.+++|.+.++.+.++..++..++...
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999889999999999999999999999999999999999999999999999999998877765555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=99.36  E-value=2.3e-11  Score=121.74  Aligned_cols=149  Identities=19%  Similarity=0.157  Sum_probs=118.2

Q ss_pred             HHHHHHHHhhhhhHHHhHHhhhh-hcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          120 SLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      ....++............|.+.+ .+|.++.+.++......++..++.++.|++.||+|+|+++..+.++.++...++..
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  346 (471)
T PRK10504        267 LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML  346 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence            33344444444555556776555 58999999999999999999999999999999999999999888877777655543


Q ss_pred             hh--hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc
Q 012159          199 LA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (470)
Q Consensus       199 ~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  268 (470)
                      ..  ++.+.+.+..++.|++.+...+....++.+..|+++++.++++.+....+|..+|+.++|.+.+..|+
T Consensus       347 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        347 VALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            32  23333445667788888888888899999999999999999999999999999999999999877665

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.36  E-value=4.4e-11  Score=118.18  Aligned_cols=144  Identities=15%  Similarity=0.137  Sum_probs=107.5

Q ss_pred             HHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012159          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (470)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  212 (470)
                      +...+|.+.++.|.+..+.+.+.++..++..++.++.|++.||+|||+.+..+.++.++..++......... ..+..++
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  328 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNY-LLLGACL  328 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccH-HHHHHHH
Confidence            445667776778999999999999999999999999999999999999988887766555444322222211 2222233


Q ss_pred             HHh--hccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHH
Q 012159          213 VGI--GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (470)
Q Consensus       213 ~G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  277 (470)
                      .|+  +..+..+....++.|.+|+++|++++|+......+|+.++|.+.|++.++.|+....++...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~  395 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA  395 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            333  33333456677889999999999999999999999999999999999999887654444333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.35  E-value=2.1e-11  Score=120.63  Aligned_cols=149  Identities=15%  Similarity=0.081  Sum_probs=105.3

Q ss_pred             HHHHHHHhhhhhHHHhHHhhhh-hcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH-HHH
Q 012159          121 LAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LPL  198 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~  198 (470)
                      +..+...........+.|.+.+ .+|++..+.++...++.++..++.+++|+++||+|||+++..+.++..+.... ...
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~  324 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW  324 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555666777554 47999999999999999999999999999999999999888765443322211 111


Q ss_pred             --hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHh-hhhhHHHHHHhhHHhhhcccCch
Q 012159          199 --LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       199 --~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                        ..++...+.+..++.|++.+...+....++.|.+|++.|++++++.+. +..+++.++|.+.+++.++.|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        325 LVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence              112223333444555666666666677889999999999999999654 44456788999999999988864

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.34  E-value=1.7e-11  Score=118.78  Aligned_cols=155  Identities=15%  Similarity=0.135  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcC-cHHHH-HHHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQ-TGVLIWSLATA  194 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~-~~~~~~~~~~~  194 (470)
                      .+.+..++............|. +.+.+|.+..+.+++.+...++..++.++.|++.||..+ |+... ..........+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  299 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSL  299 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence            3444444444444455555665 456789999999999999999999999999999998643 33222 21111111111


Q ss_pred             HHHHh--hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHH
Q 012159          195 LLPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (470)
Q Consensus       195 ~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  272 (470)
                      .....  ..+....++..++.|+......+....+..+.+|+++|+++.|+.+....+|..++|.+.|.+.+++||++.|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       300 LVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            11111  2233455566677777666666667788899999999999999999999999999999999999999998754

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.33  E-value=2.6e-11  Score=118.69  Aligned_cols=151  Identities=14%  Similarity=0.166  Sum_probs=107.2

Q ss_pred             HHhhhhhcCCCchhhHHHHHHHH-HHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHH--
Q 012159          137 IIPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSR--  210 (470)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~--  210 (470)
                      .+.+.+++|+++.+++++.+... ++..++.+++|++.||+|+|+.+.++.++..+..+.+   +...++.+.+++..  
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            34566778999999999986654 5688999999999999999998877766655443322   22223444444444  


Q ss_pred             --HHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHh
Q 012159          211 --VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (470)
Q Consensus       211 --~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (470)
                        +..|++.+...+....++.+.+|.++    .++.+...++|..+++.++|.+.+++||+..|.+.++++++..++.+.
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence              34555566666677777777766544    455555667787777778999999999999999998888777666554


Q ss_pred             hcc
Q 012159          289 LQE  291 (470)
Q Consensus       289 ~~~  291 (470)
                      .+.
T Consensus       389 ~~~  391 (402)
T PRK11902        389 MRG  391 (402)
T ss_pred             Hhh
Confidence            443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.33  E-value=6.5e-11  Score=117.04  Aligned_cols=163  Identities=15%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             HhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH-h--hhH
Q 012159          127 NMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--AGF  202 (470)
Q Consensus       127 ~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~--~~~  202 (470)
                      ......+..++|. +.+++|.+..+.+...++..++..++.++.|+++||+|||+++.++.++.++....... .  .++
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS  335 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3334445556666 45668999999999999888888899999999999999999887765544333321211 1  112


Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhh-HHHHHHhhHHhhhcccC-chHHHHHHHHHHH
Q 012159          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG-WESVFYIFGLLGI  280 (470)
Q Consensus       203 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~  280 (470)
                      ....+....+.+++.+...+....+++|++|++.|++++|+.+...++ ++...|.+.+.+ +..| |...++..++..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence            222222222222333333455678889999999999999998766553 344578877865 4445 5556666666666


Q ss_pred             HHHHHHHhhc
Q 012159          281 AWFSGFKILQ  290 (470)
Q Consensus       281 ~~~~~~~~~~  290 (470)
                      +..+..+++.
T Consensus       415 i~~~~~~~l~  424 (432)
T PRK10406        415 VAFLVSLMLH  424 (432)
T ss_pred             HHHHHHHHhh
Confidence            6555555543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.33  E-value=5.9e-11  Score=115.36  Aligned_cols=151  Identities=17%  Similarity=0.117  Sum_probs=110.2

Q ss_pred             HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 012159          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (470)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  216 (470)
                      .|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.....++.+..++..++.+++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  302 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG  302 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45566678999999999999999999999999999999999999998888877777655543444445555566666666


Q ss_pred             ccCchhhHHHH-hhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc-cCchHHHHHHHHHHHHHHHHHHhh
Q 012159          217 EGVSPSAATDL-IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       217 ~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      .....+..... ..+..+++.++.+  ..+....+|..+||.++|++.+. .+|++.+++.+++.++........
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            54444444433 3344444445544  34667889999999999999985 689999999887766554444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.33  E-value=9.4e-11  Score=117.69  Aligned_cols=162  Identities=11%  Similarity=-0.004  Sum_probs=119.9

Q ss_pred             hhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh--hHH-H
Q 012159          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA--GFM-P  204 (470)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~-~  204 (470)
                      ..........|.+.++.|.+.....+......+...++.++.|+++||+|||++++.+.++.+++.+++....  +.. .
T Consensus       285 ~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~  364 (479)
T PRK10077        285 VGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI  364 (479)
T ss_pred             hChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH
Confidence            3334445567888888999888778888888889999999999999999999999999988888776654321  111 1


Q ss_pred             HHHHHHHHHHhhccC-chhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHh------hhcccCchHHHHHHHH
Q 012159          205 GLVLSRVLVGIGEGV-SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP------IIENLGWESVFYIFGL  277 (470)
Q Consensus       205 ~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~------l~~~~g~~~~~~~~~~  277 (470)
                      ......++.+++.+. ..+....++.|.+|+++|++++|+.+....+|.++++.+.+.      +.+..+|++.|++.++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  444 (479)
T PRK10077        365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC  444 (479)
T ss_pred             HHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHH
Confidence            222333444444443 346778999999999999999999999999998888665554      4467889999999888


Q ss_pred             HHHHHHHHHHhh
Q 012159          278 LGIAWFSGFKIL  289 (470)
Q Consensus       278 ~~~~~~~~~~~~  289 (470)
                      ++++..++.+.+
T Consensus       445 ~~~~~~~~~~~~  456 (479)
T PRK10077        445 MGVLAALFMWKF  456 (479)
T ss_pred             HHHHHHHHHHhc
Confidence            776665555444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.33  E-value=9.6e-11  Score=109.93  Aligned_cols=161  Identities=11%  Similarity=0.066  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhh---hcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (470)
                      +.+....++.++.......+..+.+.+.+   .+|+++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            33444555555555455555666666443   369999999999999999999999999999999999999888877766


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      ++.++.. ..+. .......++.|++.+..+|...+...+..+ ++.+++.++. ....+|++++|++.|.+.+..|.+.
T Consensus       220 ~~~~l~~-~~~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~  295 (310)
T TIGR01272       220 LLSIGAA-LTHG-YVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQL  295 (310)
T ss_pred             HHHHHHH-HcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchH
Confidence            6654443 3233 222345568899999999999999999887 4456677775 5677999999999999999999998


Q ss_pred             HHHHHHHH
Q 012159          271 VFYIFGLL  278 (470)
Q Consensus       271 ~~~~~~~~  278 (470)
                      .|++..+.
T Consensus       296 a~~v~~~~  303 (310)
T TIGR01272       296 AFALPVPC  303 (310)
T ss_pred             HHHHHHHH
Confidence            88754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.32  E-value=1.3e-10  Score=113.31  Aligned_cols=145  Identities=16%  Similarity=0.140  Sum_probs=115.0

Q ss_pred             HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 012159          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (470)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  216 (470)
                      .|.+.+++|++..+.+++...+.++..++.++.+++.||.+ |+.++.+.++..+..+++....++.+.+.+..++.|++
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~  318 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT  318 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            46677888999999999999999999999999999999965 44444443443333333323445556777788999999


Q ss_pred             ccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHH
Q 012159          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (470)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (470)
                      .+...+...+++.+..| +++++..++.....++|..+||.++|++.+..|++..++..+++.++..
T Consensus       319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            99999999989998887 6677888888888999999999999999999999988888776654443

>PRK10054 putative transporter; Provisional

Probab=99.32  E-value=3.7e-11  Score=117.21  Aligned_cols=145  Identities=16%  Similarity=0.052  Sum_probs=117.6

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCch
Q 012159          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (470)
Q Consensus       142 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  221 (470)
                      ++.+.+....+++.+...+.....+++.|++.||+++|+.+..+.++.+++..+.....++.+.+++..++.|++.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            45567777888888888888888889999999999999999888877777766554333555667778889999988888


Q ss_pred             hhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHH
Q 012159          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK  287 (470)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  287 (470)
                      |...+.+.+..|++.|+++++..+ ...+|..+||.++|.+.++.|....|++.+....+..+...
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            888899999999999999998765 56689999999999999999998888887666554444433

>TIGR00895 2A0115 benzoate transport

Probab=99.31  E-value=3e-11  Score=118.00  Aligned_cols=142  Identities=20%  Similarity=0.196  Sum_probs=113.1

Q ss_pred             HHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh
Q 012159          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (470)
                      .+..++..........+.|.+.+++|.+..+.++..++..++..++.++.|++.||+|+|+.+... .+.++...++...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  334 (398)
T TIGR00895       256 WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGST  334 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHH
Confidence            333444444455556667788888999999999999999999999999999999999999544443 3333433333232


Q ss_pred             hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhh
Q 012159          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (470)
Q Consensus       200 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (470)
                      ..+.+.+++..++.|++.+...+...+++.+.+|+++|++++|+......+|..+||+++|++
T Consensus       335 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       335 LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            344466778888999999999999999999999999999999999999999999999999876

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.31  E-value=2.3e-11  Score=121.52  Aligned_cols=157  Identities=17%  Similarity=0.132  Sum_probs=106.2

Q ss_pred             HHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcH-------HHHHHHHHHHHHHHHHHHhhhHHH
Q 012159          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-------VLQTGVLIWSLATALLPLLAGFMP  204 (470)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~  204 (470)
                      +...+|. +.+++|++..+.+.+.+++.++..++.+++|+++||++||+       .+.+..++.++..+++. ..++.+
T Consensus       271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-~~~~~~  349 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-RANSLG  349 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-ccchHH
Confidence            3334555 45678999999999999999999999999999999998652       22223333233333332 233334


Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHH
Q 012159          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (470)
Q Consensus       205 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  284 (470)
                      ..++..++.+++.+...+...+++.+..| +++|.+.|+.+.+..+|+.++|.+.+ ..+..+|+..|++.+++.++..+
T Consensus       350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~  427 (476)
T PLN00028        350 AAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL  427 (476)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence            44445555666555444555556666554 78999999998888888888877654 22344699999999888877777


Q ss_pred             HHHhhccC
Q 012159          285 GFKILQEG  292 (470)
Q Consensus       285 ~~~~~~~~  292 (470)
                      +.++++.+
T Consensus       428 ~~~~~~~~  435 (476)
T PLN00028        428 PVAFIHFP  435 (476)
T ss_pred             HHHheecc
Confidence            76666533

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.31  E-value=3.4e-11  Score=119.24  Aligned_cols=162  Identities=13%  Similarity=0.041  Sum_probs=107.5

Q ss_pred             hhhhhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH--HHHHHHh--hhH
Q 012159          128 MDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA--TALLPLL--AGF  202 (470)
Q Consensus       128 ~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~--~~~~~~~--~~~  202 (470)
                      ..........|.+. +..|.++.+.++...++.++..++.+++|+++||+++++....+..+..+.  .++....  ..+
T Consensus       265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T TIGR00712       265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN  344 (438)
T ss_pred             HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            33334445666654 457999999999999999999999999999999996543222232221111  1111111  122


Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhH-HHHHHhhHHhhhcccCchHHHHHHHHHHHH
Q 012159          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG-SVAGLLLAPPIIENLGWESVFYIFGLLGIA  281 (470)
Q Consensus       203 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  281 (470)
                      .+...+..++.|++.............+.+|+++|++++|+.+....+| .+++|.+.|.+.++.||...|++.+++.++
T Consensus       345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~  424 (438)
T TIGR00712       345 PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  424 (438)
T ss_pred             hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHH
Confidence            2333344455555433332333456778999999999999998887776 578999999999999999999988777655


Q ss_pred             HHHHHHhh
Q 012159          282 WFSGFKIL  289 (470)
Q Consensus       282 ~~~~~~~~  289 (470)
                      ..+..+.+
T Consensus       425 ~~~~~~~~  432 (438)
T TIGR00712       425 AVILLIVV  432 (438)
T ss_pred             HHHHHHHH
Confidence            54444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.30  E-value=7.7e-11  Score=114.94  Aligned_cols=151  Identities=15%  Similarity=0.046  Sum_probs=114.0

Q ss_pred             HhHHhhhhhcCCCchhhHHHHHHHHH-HHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHH
Q 012159          135 VAIIPMSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-----GFMPGLVL  208 (470)
Q Consensus       135 ~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~  208 (470)
                      ...+.+.+|.|++++++|++..+..+ ...++.++.|++.||+|+|+++.++.++.++..+......     .+...++.
T Consensus       229 ~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       229 GLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS  308 (390)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence            34555556789999999999888764 6667789999999999999999887666533332221111     12223344


Q ss_pred             HHHHHHhhccCchhhHHHHhhhccCc-cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 012159          209 SRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (470)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  285 (470)
                      ..++.+++.+...+...+...+..++ +++++.+++.+...++|..+||.++|.+.++.|++..|++.+++.++..+.
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            44555666777777888888787765 789999999999999999999999999999999999999888776655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.30  E-value=1.9e-11  Score=121.14  Aligned_cols=148  Identities=16%  Similarity=0.188  Sum_probs=113.4

Q ss_pred             HHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh
Q 012159          121 LAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (470)
                      +..++............+.+.++ ++ +..+.+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  307 (437)
T TIGR00792       229 LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA  307 (437)
T ss_pred             HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            33333333333333334444333 34 56677888888899999999999999999999999999988877776665443


Q ss_pred             hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccC-------ccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCch
Q 012159          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       200 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                      .++.+.+++..++.|++.+...+...++++|..+       ++.+|.++|+.+....+|..+++.+.|.+.+..||.
T Consensus       308 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       308 GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3455667777888899999888999999988765       456799999999999999999999999999877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.30  E-value=5.6e-11  Score=116.17  Aligned_cols=141  Identities=12%  Similarity=0.058  Sum_probs=115.7

Q ss_pred             CCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhH
Q 012159          145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAA  224 (470)
Q Consensus       145 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~  224 (470)
                      +.+....|.+.++..+...++.+..|++.||+|+|+.+.++.++.++...+.. ..++.+.+++..++.|++........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~  328 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEVVILKMLHAFEVPFLLVGC  328 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            55667789999999999999999999999999999999998888887766654 34555777888899998876665566


Q ss_pred             HHHhhhccCccchhhHHHH-HHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 012159          225 TDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       225 ~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  286 (470)
                      ..++.+..+++.++...+. .+....+|..++|.++|++.+..||+.+|.+.+++.++..+..
T Consensus       329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            6677777787777777766 6788999999999999999999999999999888876655443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.30  E-value=8.8e-11  Score=115.23  Aligned_cols=151  Identities=15%  Similarity=0.000  Sum_probs=115.5

Q ss_pred             HHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh----hHHHHHH
Q 012159          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----GFMPGLV  207 (470)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~  207 (470)
                      .....|. +.+++|.++.+.++......++..++.++.|++.||+++|+.+.++.++.+++.++.....    .+.+.++
T Consensus       234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  313 (406)
T PRK15402        234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT  313 (406)
T ss_pred             HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence            3334555 4567899999999988888888999999999999999999999888777766665554322    3345567


Q ss_pred             HHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHH
Q 012159          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (470)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  284 (470)
                      +..++.|++.+...+......... +++++|++.+.++....+|..+|+.+++.+.+..++....+..++..++..+
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL  389 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence            778888998887777666655444 4489999999999999999999999999999888876655555544444433

>TIGR00898 2A0119 cation transport protein

Probab=99.29  E-value=1.7e-11  Score=123.84  Aligned_cols=150  Identities=17%  Similarity=-0.027  Sum_probs=113.3

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhhc
Q 012159          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGE  217 (470)
Q Consensus       139 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~G~~~  217 (470)
                      .....++.+..   +...+..+...++.++.+++.||+|||+.+.++.++.+++.+++....+. .+..++..++.+++.
T Consensus       348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI  424 (505)
T ss_pred             ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            33444555433   33344566777888999999999999999999988887777666444332 234445556667777


Q ss_pred             cCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccCC
Q 012159          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE  293 (470)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (470)
                      +..++....+..|.+|++.|++++|+.+....+|.+++|.+.+ + ...++..++++.+++.++..+..++++|++
T Consensus       425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            7778888999999999999999999999999999999999998 4 345677788888888777777777776544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.28  E-value=1.5e-10  Score=112.03  Aligned_cols=169  Identities=20%  Similarity=0.273  Sum_probs=131.1

Q ss_pred             HHHHHHHhhhhhHHHhHHhhhhhcC-CCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh
Q 012159          121 LAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (470)
                      +..++.......+..+.+.+.++.| .+....+.+.++..++-++.-...+++..|+|.|+++.++.+.+++=..+.+..
T Consensus       214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555556666666777777777 777888888889999999999999999999999999999999999888787666


Q ss_pred             hhHHHHHHH----HHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHh-hhhhHHHHHHhhHHhhhcccCchH----
Q 012159          200 AGFMPGLVL----SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWES----  270 (470)
Q Consensus       200 ~~~~~~l~~----~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~g~~~----  270 (470)
                      +++.+..++    ...+.|+..+..+.+...++.+..|++.|++++++++. ..++|..+|..++|++.+++|-+.    
T Consensus       294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~  373 (400)
T PF03825_consen  294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW  373 (400)
T ss_pred             cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH
Confidence            344343333    34569999999999999999999999999999999876 468999999999999999887554    


Q ss_pred             --HHHHHHHHHHHHHHHHHhh
Q 012159          271 --VFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       271 --~~~~~~~~~~~~~~~~~~~  289 (470)
                        .+.+.+++.++..++++.+
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence              3344444444444444333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=8e-11  Score=116.78  Aligned_cols=176  Identities=21%  Similarity=0.213  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhc--CcHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSL  191 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~  191 (470)
                      +.++.+.+...+..+...+....+|.+.++.|.+..+.+.+.++..+...++.+..|+++|+..  ++.+..++.++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4556666777777788888888899999999999999999999999999999999999999988  44555666666666


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chH
Q 012159          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (470)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~  270 (470)
                      ..+.++ ..++++.++...++.|++.|.........+.|..+.++-..+.|+...+.+++.++||+++|.+.+..| |..
T Consensus       378 ~~~~~p-~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  378 ARLFLP-FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            665554 556668999999999999999988888899999999999999999999999999999999999999887 999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 012159          271 VFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~  290 (470)
                      .|+..++..++...+++..+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999998888777776666

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.28  E-value=4e-11  Score=111.70  Aligned_cols=162  Identities=19%  Similarity=0.164  Sum_probs=134.0

Q ss_pred             hhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012159          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (470)
Q Consensus       130 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (470)
                      .+.+......-..++|++..+..++.....+..+++.+++|++.||+|.|+++.++.+++.+.++... .......+.++
T Consensus       269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~-~~~~~~~f~i~  347 (438)
T COG2270         269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI-FLEGELDFWIL  347 (438)
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH-HccccHHHHHH
Confidence            33444444445569999999999999999999999999999999999999999999888877776553 33333667788


Q ss_pred             HHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q 012159          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFKI  288 (470)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  288 (470)
                      ..+.|++.|..+...-++..+..|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+....++.++.++..+.
T Consensus       348 gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         348 GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            8999999999999999999999999999999999999999999999999999998765 676676666666666666665


Q ss_pred             hccC
Q 012159          289 LQEG  292 (470)
Q Consensus       289 ~~~~  292 (470)
                      .+.+
T Consensus       428 v~~~  431 (438)
T COG2270         428 VKVP  431 (438)
T ss_pred             ecCC
Confidence            5544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1e-10  Score=113.47  Aligned_cols=188  Identities=17%  Similarity=0.085  Sum_probs=138.4

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHH
Q 012159          106 WKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (470)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~  185 (470)
                      +++...|+.....+.+......-+...+..+...+.++.|++..+..+......+...+..+++..+.||+|||+.++++
T Consensus       262 ~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~  341 (485)
T KOG0569|consen  262 LKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLIS  341 (485)
T ss_pred             hcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            34444455555555555555555566666667778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh---hHH--H---HHHHHHHHHHhhcc-CchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHH
Q 012159          186 VLIWSLATALLPLLA---GFM--P---GLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (470)
Q Consensus       186 ~~~~~~~~~~~~~~~---~~~--~---~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  256 (470)
                      ..++.+..+++....   +..  |   ..+++.++..++.+ +..|...-+.+|.+|++.|..++++......++..+-.
T Consensus       342 ~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~  421 (485)
T KOG0569|consen  342 LSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVG  421 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence            888887776654321   111  1   22344444444333 34688899999999999999999999999999988888


Q ss_pred             hhHHhhhcccCchHHHHHHHHHHHHH-HHHHHhhccCCC
Q 012159          257 LLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGET  294 (470)
Q Consensus       257 ~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~  294 (470)
                      .....+.+.+|- ..|++..+.+++. +..+..+||++.
T Consensus       422 ~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  422 FAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             HHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            888888887776 6677777766554 445556666554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.26  E-value=1.3e-10  Score=116.08  Aligned_cols=177  Identities=16%  Similarity=0.050  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHH--------HH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL--------QT  184 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--------~~  184 (470)
                      +.++.+++..+........+...+|. +.+.+|.+..+.++..++..++..++.++.|+++||+++|+..        ..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            33445555566666666666667777 4566899999999999999999999999999999998654321        11


Q ss_pred             HHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhh
Q 012159          185 GVLIW--SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (470)
Q Consensus       185 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (470)
                      +....  ++..++......+....++...+.+.+.+...+.......+..| +.+|.++++.+....+|+.++|.+.|.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            11111  11111111112233334444455555555555555556667776 5899999999999999999999999998


Q ss_pred             hccc---CchHHHHHHHHHHHHHHHHHHhhcc
Q 012159          263 IENL---GWESVFYIFGLLGIAWFSGFKILQE  291 (470)
Q Consensus       263 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~  291 (470)
                      .+..   +|+..|++.+++.++..+....+.+
T Consensus       420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  451 (465)
T TIGR00894       420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFGS  451 (465)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            7653   3888888888877776666555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.24  E-value=1.3e-08  Score=96.54  Aligned_cols=266  Identities=12%  Similarity=0.064  Sum_probs=182.4

Q ss_pred             HhHHhhhhh-cCCCchhhH-HHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012159          135 VAIIPMSHR-FGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (470)
Q Consensus       135 ~~~~~~~~~-~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  212 (470)
                      ...|.+.+. .|++..|+. -+.-+..=.+....++...+.|..+.|++++++.+...+...++ ...++...+-+..++
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll-l~~~sv~~mq~~q~~  103 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL-LFGTSVLAMQLMQFF  103 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHCcHHHHHHHHHH
Confidence            345555554 788888765 45556666677788899999999999999999988877766665 466777899999999


Q ss_pred             HHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc--cCchHHHHHHHHHHHHHHHHHHhhc
Q 012159          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--LGWESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      .|++.+. ..+..+++-...++++-.++.+...+...+|..++.++|..+...  .+++...++......+.++..+++|
T Consensus       104 yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  104 YGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999765 678888888888999999999999999999999999999988763  3455565565555566666667777


Q ss_pred             cCCCCCC--CCCC--Ccc---chhhhhhhhhhh---HHhhhcc---------CCCCCHHHHhcCHHHHHHHHHHHHHHHH
Q 012159          291 EGETSNG--ATLA--PRS---NYINMKKSLSAS---LEEMGES---------LKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (470)
Q Consensus       291 ~~~~~~~--~~~~--~~~---~~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (470)
                      .+++..-  +...  ...   +.....+.....   .++....         .-...+++..++|.++...+...+...+
T Consensus       183 ~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcg  262 (412)
T PF01770_consen  183 MPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCG  262 (412)
T ss_pred             CCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhH
Confidence            6554211  0000  000   000000000000   0000000         0012345667889999999988888888


Q ss_pred             HHHHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          352 HYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       352 ~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      +..+..+......+.  -+-...-.|.+-+...+.+.++.+..|++..++.+.
T Consensus       263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~  315 (412)
T PF01770_consen  263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW  315 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence            888888888877754  133344567888888888888999999985555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.23  E-value=2.2e-10  Score=112.36  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhc--CCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHH-HHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKV-LQTGVLIWSLAT  193 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~  193 (470)
                      +...+.+++.......+...+|.+.+++  |.+..+.+...+...++..++.+++|+++||+++|+. +....++.+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~  324 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW  324 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence            3444455555555666677788877764  6678889999999999999999999999999998775 333333333333


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHH
Q 012159          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVF  272 (470)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~  272 (470)
                      ++. ....+....+....+.+++.....+.......+.+|+++|++++|+.+....+|.+++|.+.|.+.+..| |++.+
T Consensus       325 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~  403 (412)
T TIGR02332       325 LLA-SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL  403 (412)
T ss_pred             HHH-HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence            222 2222212222222233333333334444555677899999999999999999999999999999999875 99999


Q ss_pred             HHHHHHH
Q 012159          273 YIFGLLG  279 (470)
Q Consensus       273 ~~~~~~~  279 (470)
                      ++.+++.
T Consensus       404 ~~~~~~~  410 (412)
T TIGR02332       404 WFVAALL  410 (412)
T ss_pred             HHHHHHH
Confidence            8876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.22  E-value=5.4e-09  Score=93.19  Aligned_cols=163  Identities=16%  Similarity=0.125  Sum_probs=123.4

Q ss_pred             HhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh------
Q 012159          127 NMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA------  200 (470)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------  200 (470)
                      ....+.++.+-|.+.+.+|++..|...+.+...+|..+ .++.|.+.|++|++.++.++.+...++...+....      
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~   93 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS   93 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence            34566777888999999999999999999999999876 58899999999999999999998888887664332      


Q ss_pred             hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHH-
Q 012159          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG-  279 (470)
Q Consensus       201 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~-  279 (470)
                      ..+|.+.+..++.|.+.+....+......+.|| ++||.+.|+.-...++++.+-..+...+.+. +-..-+...+... 
T Consensus        94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~  171 (250)
T PF06813_consen   94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPA  171 (250)
T ss_pred             cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            245677777777777776666777777778998 6899999999999999988877777666554 3333333444433 


Q ss_pred             HHHHHHHHhhccC
Q 012159          280 IAWFSGFKILQEG  292 (470)
Q Consensus       280 ~~~~~~~~~~~~~  292 (470)
                      ++.++...+++..
T Consensus       172 ~v~l~~~~~vr~~  184 (250)
T PF06813_consen  172 VVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHHhhheecc
Confidence            4444444444433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.21  E-value=3.1e-10  Score=108.00  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=129.7

Q ss_pred             hHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 012159          136 AIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI  215 (470)
Q Consensus       136 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  215 (470)
                      +...+-++-+.+...+|.+.++..+.-++...+..++.+|+|.|+.++++..++++=..+++ ..++.+.+.+.+.+.|+
T Consensus       246 y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~-~~~~~~~i~~~klLH~~  324 (412)
T PF01306_consen  246 YFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG-FATNPWVISLIKLLHAL  324 (412)
T ss_dssp             HHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-T--SHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHH
Confidence            33344444455667899999999999999999999999999999999999999888877775 55666889999999999


Q ss_pred             hccCchhhHHHHhhhccCccchhhHHHH-HHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccCC
Q 012159          216 GEGVSPSAATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE  293 (470)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (470)
                      -.+.......-++++.+|++..++...+ .+...++|..+.+.++|.+.|+.|.+.+|++.+.+.++..++..+..+++
T Consensus       325 e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  325 EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9999999999999999998888888888 47888999999999999999999999999999988776655555544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.21  E-value=8e-10  Score=107.69  Aligned_cols=175  Identities=15%  Similarity=0.076  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (470)
                      +.+++.+++.+.....++..+|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.+...++....
T Consensus       255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~  333 (462)
T PRK15034        255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALL  333 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            344445555555555566666665443 2333333333445667788899999999999999999998887666665332


Q ss_pred             HH-hh----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCc---------------------cchhhHHHHHHhhhhh
Q 012159          197 PL-LA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL---------------------EERSRAVSFVFGGLSF  250 (470)
Q Consensus       197 ~~-~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~~  250 (470)
                      .. .+    .+++.+.+..+...++.|........++.+++|+                     ++-|.+.|+......+
T Consensus       334 ~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~  413 (462)
T PRK15034        334 FLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV  413 (462)
T ss_pred             HHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence            22 22    2345555555555566666666777788888874                     2568899999999999


Q ss_pred             HHHHHHhhHHhhhcccC-chHHHHHHHHHHHHHHHHHHhhccC
Q 012159          251 GSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFKILQEG  292 (470)
Q Consensus       251 g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  292 (470)
                      |+.+-|.+.|...+..| +...|+...+..+++..+.+....+
T Consensus       414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988888887755 8888988888877776665555433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.20  E-value=3e-08  Score=101.28  Aligned_cols=155  Identities=19%  Similarity=0.206  Sum_probs=124.2

Q ss_pred             hHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHHHHHHHHHHHhhh-------HHHHHH
Q 012159          136 AIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAG-------FMPGLV  207 (470)
Q Consensus       136 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~  207 (470)
                      ....+.+.+|++......+...+....-+..+++|+++|+ +|+++.+.++.++..++.++++..+.       .....+
T Consensus        10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            3444566789999999999998888888999999999995 69999999999998888877753211       113456


Q ss_pred             HHHHHHHhhccCchhhHHHHhhhccCcc---chhhHHHHHHhhhhhHHHHHHhhHHhhhcc-------cCchHHHHHHHH
Q 012159          208 LSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------LGWESVFYIFGL  277 (470)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~g~~~~~~~~~~  277 (470)
                      ++..+.++|.|+.-|...+...|.++++   +|.+.+.++..+.++|+.+++++.+++.+.       .+|...|.+.++
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i  169 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI  169 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence            7778888999999999999999999754   367788889999999999999999988744       369999999888


Q ss_pred             HHHHHHHHHHhhc
Q 012159          278 LGIAWFSGFKILQ  290 (470)
Q Consensus       278 ~~~~~~~~~~~~~  290 (470)
                      +.++.+++.....
T Consensus       170 ~m~ia~lvf~~g~  182 (654)
T TIGR00926       170 LMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHhc
Confidence            8877766655443

>TIGR00896 CynX cyanate transporter

Probab=99.20  E-value=8.5e-10  Score=106.15  Aligned_cols=141  Identities=14%  Similarity=0.023  Sum_probs=108.4

Q ss_pred             HHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHHHHHHHHHHHHHHhhhHH
Q 012159          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLAGFM  203 (470)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~  203 (470)
                      +..........++|.+.++.|.+..+.+.+.++..++..++.++.|++.||+ +||+.+.++.++.+++.+++.+..++ 
T Consensus       208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  286 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH-  286 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-
Confidence            3333344455567777778899999999999999999999999999999999 56666677767666666555433332 


Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhhccC-ccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC
Q 012159          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (470)
Q Consensus       204 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (470)
                      ... ...++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.|++.++.|
T Consensus       287 ~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       287 GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222 24567899999988888787776554 4667899999999999999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.19  E-value=4.6e-10  Score=109.69  Aligned_cols=152  Identities=17%  Similarity=0.136  Sum_probs=114.4

Q ss_pred             HHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012159          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (470)
Q Consensus       134 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  212 (470)
                      ...+|.+.++.+.++.+.+++.++..++...+..+.+++.|| ++.++.+..+.++.+++.++++ ..++.+.+++..++
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~l  306 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG-MVSNLQQLFTLICL  306 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence            345677666665577889999888887777666666777664 6666777777777777766554 34555666667778


Q ss_pred             HHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc---C-chHHHHHHHHHHHHHHHHH
Q 012159          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---G-WESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g-~~~~~~~~~~~~~~~~~~~  286 (470)
                      .|++.+...|...+++.+..|+++||+++|+.+....+|..+||.++|++.++.   + ....+++.+++.++..+..
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            888888888888999999999999999999999999999999999999999874   3 3455555555555554443

>PRK10133 L-fucose transporter; Provisional

Probab=99.16  E-value=1.2e-09  Score=108.02  Aligned_cols=139  Identities=16%  Similarity=0.114  Sum_probs=110.5

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCc
Q 012159          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (470)
Q Consensus       141 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  220 (470)
                      .+.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++.. ..++. ..+...++.|++.+..
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~glg~~~i  364 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGGH-VGLIALTLCSAFMSIQ  364 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCCh-HHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999998888777665554443 33332 2345667889999999


Q ss_pred             hhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHHHHHHHHHH
Q 012159          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWF  283 (470)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~  283 (470)
                      +|...+...+..+ ++.+.+.++... ..+|+.++|++.|.+.+..| .+..|++..+..+...
T Consensus       365 ~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        365 YPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            9999999999987 456778887764 44788899999999999887 7888887665544443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.16  E-value=1.4e-09  Score=95.50  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=114.2

Q ss_pred             HhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 012159          138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE  217 (470)
Q Consensus       138 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  217 (470)
                      ..+++.+|+|+...+.+.+......++.+++.|.++||+|++.+.+.+..+..+..=..  ..-+.+.-++...+.|+..
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~--l~Ft~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG--LFFTFLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh--HHhhhccHHHHHHHHhhhH
Confidence            34788999999999999999999999999999999999999988887655544433221  1111234456677888887


Q ss_pred             cCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC---ch-HHHHHHHHHHHHHHHHHHhhc
Q 012159          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG---WE-SVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---~~-~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      +.........++...|+++.|++.|..++..++|-++.|+++|++.++-|   |- .-|++.+.+++....+.+.+.
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N  443 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLN  443 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence            77766678888889999999999999999999999999999999998765   32 233444445555554444443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.16  E-value=2.2e-10  Score=104.21  Aligned_cols=134  Identities=12%  Similarity=0.047  Sum_probs=98.8

Q ss_pred             HHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccch
Q 012159          158 FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER  237 (470)
Q Consensus       158 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r  237 (470)
                      ..+.-..|.++.+++.||+|||+.+..+.+++++..++.....+. ....+..+..-++.++.+.+.+.+..|.+|.+.|
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r-n~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR-NAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            345556788999999999999999999999998888766433322 2222233333334455566778999999999999


Q ss_pred             hhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccCCC
Q 012159          238 SRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET  294 (470)
Q Consensus       238 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (470)
                      +.+.|.......+|+++.|+++  +.....-..+..+.+.++++..++..++|-+++
T Consensus       469 atgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            9999999999999999999999  333334445666777777777777777765544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.14  E-value=1e-09  Score=106.71  Aligned_cols=139  Identities=20%  Similarity=0.302  Sum_probs=101.8

Q ss_pred             hHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh----hHHHHH
Q 012159          132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----GFMPGL  206 (470)
Q Consensus       132 ~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l  206 (470)
                      ......|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+++....    +....+
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI  303 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            33444555 4557899999999999999999999999999999999999998888777666665543321    233455


Q ss_pred             HHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhh-HHHHHHhhHHhhhcccCchHHH
Q 012159          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWESVF  272 (470)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~~~~  272 (470)
                      ++..++.|++.+...+.......|..| ++++++.++.+..... |.+.+|. .+.+.+..+|...+
T Consensus       304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~  368 (385)
T TIGR00710       304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHH
Confidence            566778889888888888888888876 7899999998877665 4555554 44444443444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.12  E-value=2e-09  Score=106.33  Aligned_cols=151  Identities=20%  Similarity=0.174  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (470)
                      ..+++..++............+++.++ +|.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++
T Consensus       228 ~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~  306 (428)
T PF13347_consen  228 RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL  306 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence            344445555566666666666665554 4544 67788888999999999999999999999999999999999998887


Q ss_pred             HHHhh-hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCc-------cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC
Q 012159          196 LPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (470)
Q Consensus       196 ~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (470)
                      ..+.. ++.+.+++..++.|++.+...+...++++|..+.       ++.|..+|..+....+|..+++.+.+.+.+..|
T Consensus       307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            76555 5778999999999999999999999999998863       345889999999999999999999998887665


Q ss_pred             c
Q 012159          268 W  268 (470)
Q Consensus       268 ~  268 (470)
                      +
T Consensus       387 y  387 (428)
T PF13347_consen  387 Y  387 (428)
T ss_pred             c
Confidence            4

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.12  E-value=2.8e-07  Score=89.03  Aligned_cols=299  Identities=10%  Similarity=-0.035  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhhc-CCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH----
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRF-GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS----  190 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~----  190 (470)
                      ...+....++...+.-...+..+.+..+. .-+---.+...-+-.+..++..+..|.+.||..|.+++..+.+.--    
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            44566777888887778888888765555 3344444555555666777888999999999999988776643221    


Q ss_pred             HHHHHHH--Hhh-h-----H--HHHHHHHHHHHHhhccCchhh-HHHHhhhcc------CccchhhHHHHHHhhhhhHHH
Q 012159          191 LATALLP--LLA-G-----F--MPGLVLSRVLVGIGEGVSPSA-ATDLIARSI------PLEERSRAVSFVFGGLSFGSV  253 (470)
Q Consensus       191 ~~~~~~~--~~~-~-----~--~~~l~~~~~l~G~~~~~~~~~-~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~  253 (470)
                      +++.++.  +.. .     .  ...+++.-.+.|.-.-..... ..+.=.||.      +++.+.+.++.+.-.-.+.-+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence            1111111  111 1     1  112222222222221111111 111112332      345566777777777788999


Q ss_pred             HHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhc----cCCCCCCCCCCCccch-h-hh-----hhhhhhhHHhhh-
Q 012159          254 AGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ----EGETSNGATLAPRSNY-I-NM-----KKSLSASLEEMG-  321 (470)
Q Consensus       254 ~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~-~~-----~~~~~~~~~~~~-  321 (470)
                      ++|++.|.+....+.+...++.++..++....=+++.    +..|.-..++..++.. . ..     .+.......... 
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN  243 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence            9999999999988988888877777666544322221    1111111110000000 0 00     000000000000 


Q ss_pred             -ccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012159          322 -ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (470)
Q Consensus       322 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~  400 (470)
                       -......|+..++++.+.......+++ +...++......|+... |+++...|.+-+...+.++.++++.+++.+|+|
T Consensus       244 ~~~~~~~~w~~Y~~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  244 PLRTIIRGWRTYFRQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             HHHHHhccHHHHHhCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             111235677888887665544444444 44556678888899865 999999999999999999999999999999999


Q ss_pred             hcCCcchHHHHHHhhhhHHH
Q 012159          401 ATGVETTMGITNTVGAVPGI  420 (470)
Q Consensus       401 ~~~~~~~~g~~~~~~~~~~~  420 (470)
                      ..+.    |...........
T Consensus       322 lvr~----G~~~l~~q~~~L  337 (432)
T PF06963_consen  322 LVRA----GLWSLWWQWVCL  337 (432)
T ss_pred             chhh----HHHHHHHHHHHH
Confidence            7763    444444444333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.12  E-value=1.6e-09  Score=101.77  Aligned_cols=282  Identities=12%  Similarity=0.052  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh----hcCcHHHHHHH-HHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGV-LIWS  190 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~-~~~~  190 (470)
                      ++.+....+...+.+..-..+.+++.+++|++....+.+..+.-+...+.+++.|..+||    +||||.++... +..+
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~  113 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA  113 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence            334444444555666666667888888999999999999999999999999999999995    89888776654 4444


Q ss_pred             HHHHHHHHhhhH----------------HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhh-HHHHHHhhhhhHHH
Q 012159          191 LATALLPLLAGF----------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR-AVSFVFGGLSFGSV  253 (470)
Q Consensus       191 ~~~~~~~~~~~~----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~  253 (470)
                      ++.+++.+.++-                ...+++...+.-++.-......-+++.|....+++.+ +++.+..+..+|+.
T Consensus       114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv  193 (498)
T KOG0637|consen  114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV  193 (498)
T ss_pred             HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence            555554433321                1234455555556666778888999999997777766 99999999999999


Q ss_pred             HHHhhHHhhhccc--C---chHHHHHHHHHHHHHHHHH-HhhccCCCC--CC--CCCCCccchhhhhhhhhhhHHhhhcc
Q 012159          254 AGLLLAPPIIENL--G---WESVFYIFGLLGIAWFSGF-KILQEGETS--NG--ATLAPRSNYINMKKSLSASLEEMGES  323 (470)
Q Consensus       254 ~g~~~~~~l~~~~--g---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (470)
                      +|..+++++--+.  .   -...+..+..+-...+.-. +...++...  ..  ++...+....+.........+|... 
T Consensus       194 LGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~e~fG-  272 (498)
T KOG0637|consen  194 LGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTARSKSSKLPFLLEIFG-  272 (498)
T ss_pred             eeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccccccccCcchHHHHhc-
Confidence            9988887432110  1   1122222222211111111 111111000  00  0000000000000000000011100 


Q ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCch----------------hhHHHHHHHHHHHH
Q 012159          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLT----------------EAAWVSILPPLASV  386 (470)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~----------------~~~~~~~~~~~~~~  386 (470)
                            .-....|..|.+++...+.+++++.+.-|...++-+ .++-++.                ...+-..++.+...
T Consensus       273 ------~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lg  346 (498)
T KOG0637|consen  273 ------ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLG  346 (498)
T ss_pred             ------hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHH
Confidence                  111234778999999999999998888888877643 3333221                11244566777778


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 012159          387 LVTSIAAQFADNLIATGV  404 (470)
Q Consensus       387 ~~~~~~g~l~dr~~~~~~  404 (470)
                      +.++...++.+|+|.|+.
T Consensus       347 i~S~~~~~l~~~~g~r~~  364 (498)
T KOG0637|consen  347 IYSLLVEKLSRKFGTRKR  364 (498)
T ss_pred             HHHHHHHHHHHhcCcceE
Confidence            888889999999995543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.12  E-value=2.9e-09  Score=102.49  Aligned_cols=167  Identities=15%  Similarity=-0.029  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcC---cHHHHH-HHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG---RKVLQT-GVLIWSLA  192 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~---r~~~~~-~~~~~~~~  192 (470)
                      +.+.+..++.......+...+|.+.++.|++.. .+...++..+...++   .++++||..|   |+.... ..++.++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~  270 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF  270 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            444455555555566666778887777888764 566666666555555   4677777654   343332 33333333


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHH
Q 012159          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (470)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  272 (470)
                      ..+.. ...+....++...+.|++.....+...++.+|.+|++.|++++|+.+....+|+.++|++.+.+..  |.+..|
T Consensus       271 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f  347 (368)
T TIGR00903       271 FLALA-FELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYF  347 (368)
T ss_pred             HHHHH-HccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHH
Confidence            33332 222223445555667777777778888999999999999999999999999999999999988773  777888


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 012159          273 YIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~  290 (470)
                      .+.++..++..+..+.++
T Consensus       348 ~~~~~~~~i~~~~~~~~~  365 (368)
T TIGR00903       348 TFLAILITIAFAIALLLP  365 (368)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            888877776666554333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.10  E-value=3.3e-09  Score=103.53  Aligned_cols=138  Identities=16%  Similarity=0.135  Sum_probs=92.1

Q ss_pred             hHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012159          136 AIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVG  214 (470)
Q Consensus       136 ~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  214 (470)
                      ..|. +.+++|.+..+.+.+.+...++..++.++.+++.||+|+|+++.++..+..++.+++...... +..+....+.+
T Consensus       225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~  303 (392)
T PRK10473        225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH-AVSLFGITLIC  303 (392)
T ss_pred             hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3444 456789999999999999999999999999999999999999999888777777665433322 33333334444


Q ss_pred             hhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHH
Q 012159          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (470)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  279 (470)
                      .+.+...+..  ...+..|.++|+   +.......++..+|+.+++++.++.|+.....+.+.+.
T Consensus       304 ~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        304 AGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            4433333322  223344444443   44445556777888888888888878776555555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.10  E-value=2.7e-09  Score=118.87  Aligned_cols=146  Identities=18%  Similarity=0.176  Sum_probs=118.5

Q ss_pred             HHHhHHh-hhhhcCCCch-hhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012159          133 LSVAIIP-MSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (470)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (470)
                      ....+|. +.+.+|.+.. +.+++.++..++.+++.+++|++.||+++++++.++.++.+++.+++. ...+.+.+++..
T Consensus       251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  329 (1146)
T PRK08633        251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TAPSLASVLVLF  329 (1146)
T ss_pred             HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-HhhhHHHHHHHH
Confidence            3344444 5677899998 999999999999999999999999999999988888887777766664 344557777888


Q ss_pred             HHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc-cCchHHHHHHHHHH
Q 012159          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLG  279 (470)
Q Consensus       211 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~~~  279 (470)
                      ++.|++.+...+...+++.+..|++.||+++|+.+....+|.++++.+++.+... +++...|++.+.+.
T Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            9999999998899999999999999999999999999999998888888776542 34555666555543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.09  E-value=1.8e-07  Score=91.35  Aligned_cols=280  Identities=10%  Similarity=0.003  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCC-----CchhhHHHHHHHHHHHHHh-hhhhHHHhhhhcCcHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW-----NSSVAGLVQSSFFWGYALS-QLPGGWLAKIFGGRKVLQTGV  186 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~  186 (470)
                      ++.+..+.+.+|+..+..+.    +-.+.|.+..     +.+.+.++-+...+...+. .++.+++++|++|++++.+..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~   81 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence            34455555555555554443    3345555544     4467888888887777766 889999999999999988877


Q ss_pred             HHHHHHHHHHHHhh----hH--------------------------HHHHHHHHHHHHhhccCchh-hHHHHhhhccCcc
Q 012159          187 LIWSLATALLPLLA----GF--------------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLE  235 (470)
Q Consensus       187 ~~~~~~~~~~~~~~----~~--------------------------~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~  235 (470)
                      ..+.....++++.-    +.                          .|...+..+...+....... ...+..+|.++.+
T Consensus        82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~  161 (472)
T TIGR00769        82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID  161 (472)
T ss_pred             HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            66666555554330    00                          13333444444554445554 7789999999999


Q ss_pred             chhhHHHHHHhhhhhHHHHHHhhHHhhhc-------cc-Cch----HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 012159          236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NL-GWE----SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPR  303 (470)
Q Consensus       236 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~-g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (470)
                      +-.|..++...+.++|.++++.+..++.+       .. .|.    ..+.+.+++.++...+...+.+....++... +.
T Consensus       162 qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~-~~  240 (472)
T TIGR00769       162 EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSY-NP  240 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc-ch
Confidence            99999999999999999999999888763       11 232    2333333334444444444432221111000 00


Q ss_pred             cchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh----hHHHHH
Q 012159          304 SNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSI  379 (470)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~  379 (470)
                      ++         +..++..+..-..+++.++++|-++.+++...+++.+...+....-..+.+.+- ++.+    .|.+..
T Consensus       241 ~~---------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~  310 (472)
T TIGR00769       241 AL---------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFST  310 (472)
T ss_pred             hh---------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence            00         000000011112346778999999998888888888877777666666665542 3322    234445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          380 LPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      ..++..++.+++.+++.+|+|.+.....
T Consensus       311 ~~gi~tl~~~l~~~~l~~~~Gw~~~a~i  338 (472)
T TIGR00769       311 WTGVVSVTMMLLSGNVIRKYGWLTAALI  338 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            5566666667777999999998754443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.09  E-value=7e-10  Score=106.39  Aligned_cols=136  Identities=26%  Similarity=0.302  Sum_probs=109.9

Q ss_pred             HHHHHHHhhhhhHHHhHHhh-hhhcCCC-chhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          121 LAFVICNMDKVNLSVAIIPM-SHRFGWN-SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~-~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      ...+.............|.+ .+++|.+ ..+.+.+.++..+...++.++.|++.||+++|+...+......+..+.+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (352)
T PF07690_consen  213 IAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL  292 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444566677774 8889999 799999999999999999999999999999988877776666666555533


Q ss_pred             hh--hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHH
Q 012159          199 LA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (470)
Q Consensus       199 ~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  256 (470)
                      ..  ++....++..++.|++.+...+....++.+.+|+++||++.|+.+...++|..+||
T Consensus       293 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  293 LPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             SHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            22  23456666788899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.09  E-value=6.8e-09  Score=101.24  Aligned_cols=147  Identities=16%  Similarity=0.082  Sum_probs=113.4

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 012159          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG  218 (470)
Q Consensus       139 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  218 (470)
                      .+.+.+|.++.+.|++.+...++..++++..+++.||.++|+++..+.+ .++..+++. ..++++..++..++.|++.+
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMA-LQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHH-HHhHHHHHHHHHHHHHHhhh
Confidence            3556689999999999999999999999999999999999988877753 344433333 34455666677778999988


Q ss_pred             CchhhHHHHhhhccCccc-hhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHh
Q 012159          219 VSPSAATDLIARSIPLEE-RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (470)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (470)
                      ...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ +.+|-+..+++.++..++.+...+.
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL  378 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            888888888888766544 79999999999999999999999865 5678777777755554444443333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.08  E-value=2e-09  Score=119.47  Aligned_cols=161  Identities=12%  Similarity=0.030  Sum_probs=122.5

Q ss_pred             HHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          120 SLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      .+..++..+....+...+|. +.+.+|.+..+.|++.+.+.++.+++.++.|+++|+.++++.+..+.++.+++.+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (1140)
T PRK06814        231 ILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAF  310 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHh
Confidence            33333333333444445565 45568999999999999999999999999999999888777666665555554443332


Q ss_pred             h-------------------hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhH
Q 012159          199 L-------------------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (470)
Q Consensus       199 ~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  259 (470)
                      .                   ..+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.+....+|..++++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        311 ASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL  390 (1140)
T ss_pred             cccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence            1                   144467778888999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhc-ccCchHHHHHHHHHHH
Q 012159          260 PPIIE-NLGWESVFYIFGLLGI  280 (470)
Q Consensus       260 ~~l~~-~~g~~~~~~~~~~~~~  280 (470)
                      +.+.+ ..++...+++.+++.+
T Consensus       391 g~l~~~~~~~~~~~~~~~~~~~  412 (1140)
T PRK06814        391 ALLQALGFSIPWIILFIALANL  412 (1140)
T ss_pred             HHHHHhccCHHHHHHHHHHHHH
Confidence            99874 4566766666555433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.06  E-value=5.1e-09  Score=101.63  Aligned_cols=128  Identities=17%  Similarity=0.062  Sum_probs=89.2

Q ss_pred             HHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH---HhhhHHHHHHH
Q 012159          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP---LLAGFMPGLVL  208 (470)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~  208 (470)
                      +....|. +.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++.++..+..+...   ....+.+.+.+
T Consensus       213 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (377)
T PRK11102        213 FLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVV  292 (377)
T ss_pred             HHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3334444 5566899999999999999999999999999999999999999888765443332221   12223344444


Q ss_pred             HHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhh-hhhHHHHHHhhHHh
Q 012159          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPP  261 (470)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~  261 (470)
                      ...+.+.+.+...+.....+.+..| ++++++.++.+.. ..+|..+++++++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        293 GVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4445555555555666667777766 8899999987654 45777777776553

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.06  E-value=2.3e-09  Score=107.80  Aligned_cols=143  Identities=16%  Similarity=0.130  Sum_probs=115.6

Q ss_pred             HHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Q 012159          122 AFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (470)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (470)
                      ..++..........+.|. ++..+|.++.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++..++....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~  346 (495)
T PRK14995        267 MAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD  346 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333444455565 5556899999999999999999999999999999999999998888887777665543322


Q ss_pred             --hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc
Q 012159          201 --GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (470)
Q Consensus       201 --~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (470)
                        ++.+...+..++.|++.+...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+
T Consensus       347 ~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        347 FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3345566778899999999888888899999999999999999999999999999999998865

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.05  E-value=1.9e-08  Score=92.12  Aligned_cols=169  Identities=17%  Similarity=0.089  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHHHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~  197 (470)
                      +.+.+-+..+..++....+|.+..|.|+|..+.|++.++..+......+....+.+|. ++|+..+...+++.++.+.+.
T Consensus       213 vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~  292 (395)
T COG2807         213 VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL  292 (395)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            3344445556667777889999999999999999999999999999999999999965 567777777777777776665


Q ss_pred             HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhcc-CccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHH
Q 012159          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIF  275 (470)
Q Consensus       198 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~  275 (470)
                      +.+.+.+.+.  .++.|+|.|..++.....+.+.. ++++-++..|+.+..+.+=..+||.+.|++.|..| |+..+...
T Consensus       293 ~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l  370 (395)
T COG2807         293 LAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLL  370 (395)
T ss_pred             HhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHH
Confidence            4444322222  58999999999999999999887 44566778888899999999999999999999875 99888887


Q ss_pred             HHHHHHHHHHHHhh
Q 012159          276 GLLGIAWFSGFKIL  289 (470)
Q Consensus       276 ~~~~~~~~~~~~~~  289 (470)
                      +...++..+.-+..
T Consensus       371 ~~~~i~m~i~Gl~a  384 (395)
T COG2807         371 ALATLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHHHHhhc
Confidence            77766665554443

>PRK09848 glucuronide transporter; Provisional

Probab=99.04  E-value=1.7e-09  Score=107.52  Aligned_cols=149  Identities=14%  Similarity=0.098  Sum_probs=110.8

Q ss_pred             HHHHHHHHhhhhhHHHhHHhh-hhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          120 SLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      .+..++............|.+ .+.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.+++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~  313 (448)
T PRK09848        234 CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW  313 (448)
T ss_pred             HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444445553 4456766655555555556778889999999999999999999998887777666543


Q ss_pred             hh-hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCcc-------chhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc
Q 012159          199 LA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE-------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (470)
Q Consensus       199 ~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  268 (470)
                      .. ++.+.+++..++.|+|.+...+...++.+|..+.+       ++|..+|+.+....+|..+|+.+.+.+.+..|+
T Consensus       314 ~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        314 VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            32 34566667778899999999999999999988654       358999999999999999999999998876665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.03  E-value=2.9e-09  Score=106.43  Aligned_cols=151  Identities=13%  Similarity=0.007  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (470)
                      .+++..++............+.+.+....+....+++.++..++.+++.++++++.||+|+|+.+.++.++..++.+...
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~  314 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLL  314 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445555555555555444566777788888889999999999999999999999888776655554432


Q ss_pred             H----hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccC-------ccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          198 L----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       198 ~----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      .    ..++.+.+++..++.|++.+...+...++++|..+       .+..|..+|.......+|..+++.+.|++.+..
T Consensus       315 ~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        315 LMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2    13445666777788899999999999999999865       334466889999999999999999999998776


Q ss_pred             Cc
Q 012159          267 GW  268 (470)
Q Consensus       267 g~  268 (470)
                      |+
T Consensus       395 Gy  396 (473)
T PRK10429        395 GY  396 (473)
T ss_pred             CC
Confidence            65

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.03  E-value=3.1e-09  Score=106.86  Aligned_cols=141  Identities=16%  Similarity=0.204  Sum_probs=114.2

Q ss_pred             HHHhhhhhHHHhHHhh-hhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH-h--h
Q 012159          125 ICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--A  200 (470)
Q Consensus       125 ~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~--~  200 (470)
                      +...........+|.+ .+.+|.++.+.++......++..++.++.|++.||+|||+++.++..+.+++..++.. .  .
T Consensus       266 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~  345 (485)
T TIGR00711       266 LLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD  345 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            3333334444556664 4558999999999999999999999999999999999999999988887777766541 1  1


Q ss_pred             hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc
Q 012159          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (470)
Q Consensus       201 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (470)
                      .+.+.++...++.|++.+...+.......+..|+++++++.|+.+....+|..+|+.+.+.+.++
T Consensus       346 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       346 TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455666788899999888877778888888999999999999999999999999999988765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11043 putative transporter; Provisional

Probab=99.01  E-value=2.2e-08  Score=98.12  Aligned_cols=137  Identities=11%  Similarity=0.091  Sum_probs=103.3

Q ss_pred             HHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH----hhhHHHHHHH
Q 012159          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL----LAGFMPGLVL  208 (470)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~  208 (470)
                      +....|.+.+++|.+..+.++......++..++.+..+++.||+|+|+.+....++.+++.+.+..    ..++.+.+++
T Consensus       222 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (401)
T PRK11043        222 WLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI  301 (401)
T ss_pred             HHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            344567777788999999999888888999999999999999999998766555444443332211    1233445556


Q ss_pred             HHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      ...+.|++.+...+...+...+..| +++++++|+++.....+..+++.+.+.+.+......
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            6677888888888888888777776 689999999999888888999999998877543433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.00  E-value=7.2e-09  Score=99.75  Aligned_cols=124  Identities=15%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             HHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHH-HHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh----
Q 012159          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----  200 (470)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----  200 (470)
                      ............|.+.+++|++..+.+.+.++.. ++..++.+++|++.||+|+|+.+.++.++.++...+..+..    
T Consensus       221 ~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  300 (356)
T TIGR00901       221 YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH  300 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3344444555566665669999999998888766 57789999999999999999998888887777665543332    


Q ss_pred             ------hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhh
Q 012159          201 ------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS  249 (470)
Q Consensus       201 ------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  249 (470)
                            ++.+.+..+.++.+++.+...+...+++.+.+|+++||+.+|+.++..+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       301 HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                  3346677788888999999999999999999999999999999887654

>PRK09669 putative symporter YagG; Provisional

Probab=98.94  E-value=1.5e-08  Score=100.66  Aligned_cols=133  Identities=10%  Similarity=0.066  Sum_probs=99.0

Q ss_pred             hHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Q 012159          136 AIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSRVLVG  214 (470)
Q Consensus       136 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~G  214 (470)
                      ..+++.++.--++...+.+.....+..+++.+++++++||+|+|+.+.++.++.++..+...+. .++.+.+++..++.|
T Consensus       251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  330 (444)
T PRK09669        251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN  330 (444)
T ss_pred             hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            3344333332233444556667778888889999999999999999988876655443333222 345566777888999


Q ss_pred             hhccCchhhHHHHhhhccCc-------cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc
Q 012159          215 IGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (470)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  268 (470)
                      ++.+...+...++++|..+.       +..|..++..+....+|..+|+.++|.+.+..|+
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998752       2346678899999999999999999999887776

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.87  E-value=7.1e-08  Score=94.24  Aligned_cols=126  Identities=16%  Similarity=0.029  Sum_probs=94.4

Q ss_pred             hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhc
Q 012159          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL--AGFMPGLVLSRVLVGIGE  217 (470)
Q Consensus       140 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~  217 (470)
                      +.+.+|.+..+.+++.....++..++.++.+++.||++++........+.+.........  ..+.+.+++..++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            444589999999999999999999999999999999984333322222222111111111  123456677788899999


Q ss_pred             cCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      +...+...++..+.+| ++++.+.++.+....+|..+++.+++.+....
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            9999999999999887 68899999999999999999999999886553

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.87  E-value=1.8e-06  Score=80.52  Aligned_cols=160  Identities=34%  Similarity=0.490  Sum_probs=124.9

Q ss_pred             HHHHHHhhhhhHHHhHHhhhhhcCCCc--hhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHh
Q 012159          122 AFVICNMDKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (470)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (470)
                      ..+.............+.+..+++.+.  .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~   89 (338)
T COG0477          10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA   89 (338)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence            333444566666677777777777666  488999999999999999999999999999988888776544444444333


Q ss_pred             hh-HHHHHHHHHHHHHhhccCchhhHHHHhhhccCc-cchhhHHHHHHh-hhhhHHHHHHhhHHhhhcc--cCchHHHHH
Q 012159          200 AG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFG-GLSFGSVAGLLLAPPIIEN--LGWESVFYI  274 (470)
Q Consensus       200 ~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~g~~~~~~~  274 (470)
                      .. ..+.+++.|++.|++.+...+...+++.+++++ ++|+...+.... ...+|..++|.+++.+...  .+|++.|..
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            33 468899999999999999999999999999987 678999999888 5888889999888777654  578886666


Q ss_pred             HHHHHHH
Q 012159          275 FGLLGIA  281 (470)
Q Consensus       275 ~~~~~~~  281 (470)
                      .......
T Consensus       170 ~~~~~~~  176 (338)
T COG0477         170 AALLGLL  176 (338)
T ss_pred             HHHHHHH
Confidence            6655533

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.87  E-value=7.7e-08  Score=94.24  Aligned_cols=152  Identities=16%  Similarity=0.072  Sum_probs=105.7

Q ss_pred             HHHHHhhhhhHHHhHHhhhhhc--CCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Q 012159          123 FVICNMDKVNLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (470)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (470)
                      .++...........++.+.++.  +.+....+...+.+..+..++.++++++.||+++|+++.+..++..+..++... .
T Consensus       241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-~  319 (410)
T TIGR00885       241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-A  319 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-c
Confidence            3333333333444555554443  444445555677777888999999999999999999988887777776666543 3


Q ss_pred             hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc------CchHHHHH
Q 012159          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------GWESVFYI  274 (470)
Q Consensus       201 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~~~~~~~  274 (470)
                      +. .......++.|++.+..+|...++..+..+++.+....++...  .+|++++|++.|++.|..      +.+..|++
T Consensus       320 ~~-~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~  396 (410)
T TIGR00885       320 GG-HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL  396 (410)
T ss_pred             CC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHH
Confidence            33 2335666778888899999999999999985544334444333  399999999999999954      47777776


Q ss_pred             HHHH
Q 012159          275 FGLL  278 (470)
Q Consensus       275 ~~~~  278 (470)
                      ..+.
T Consensus       397 ~~~~  400 (410)
T TIGR00885       397 PLLC  400 (410)
T ss_pred             HHHH
Confidence            4443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.87  E-value=1.6e-08  Score=96.84  Aligned_cols=162  Identities=17%  Similarity=0.105  Sum_probs=137.0

Q ss_pred             HhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 012159          127 NMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL  206 (470)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (470)
                      ++....+..++-.-.++++..+...|.....-..+-++.-++.+++.+|+|+-+++.+++.+..+=++..+ ...|.|+.
T Consensus       384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S-~L~n~W~v  462 (618)
T KOG3762|consen  384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS-YLQNPWMV  462 (618)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH-HhcCchhe
Confidence            33333344444445678888888889888888888889999999999999999999999999888877775 45666999


Q ss_pred             HHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHh-hhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 012159          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (470)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  285 (470)
                      +..-+++|+..+..|.+..+++++..||+-|..+.++.+. ..++|-.+|.++||.+.+.+|-|..|.+.++.+++.++.
T Consensus       463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999765 557999999999999999999999999999988777665


Q ss_pred             HHhh
Q 012159          286 FKIL  289 (470)
Q Consensus       286 ~~~~  289 (470)
                      ...+
T Consensus       543 ~~~i  546 (618)
T KOG3762|consen  543 FISI  546 (618)
T ss_pred             HHHh
Confidence            5444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.82  E-value=3.2e-08  Score=97.19  Aligned_cols=176  Identities=14%  Similarity=0.073  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCc--------HHH-H
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR--------KVL-Q  183 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~~~-~  183 (470)
                      ..++.++++.+........+....|. +.+-+|++..+.|++.++..+...+..+++|.++||.-+|        |.+ .
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            45667777888888888888888888 5567899999999999999999999999999999987552        222 2


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc-cCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhh
Q 012159          184 TGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (470)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (470)
                      ++....++..+++++.........+..+..+.+. |...+....-..|.. ++.-+..+|+.+....+++.++|.+.+.+
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            3444444555444444422121112222222222 333333333333434 48899999999999999999999999999


Q ss_pred             hcc---cCchHHHHHHHHHHHHHHHHHHhhc
Q 012159          263 IEN---LGWESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       263 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      ...   ..|+++|++.+++.++..+.+.++-
T Consensus       417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  417 VTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            842   3699999999999888776665554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.82  E-value=2.3e-07  Score=92.66  Aligned_cols=139  Identities=16%  Similarity=0.053  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHhhhhcC-----cHHH--HHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHh
Q 012159          151 AGLVQSSFFWGYALSQLPGGWLAKIFGG-----RKVL--QTGVLIWSLATALLPLL--------AGFMPGLVLSRVLVGI  215 (470)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~-----r~~~--~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~l~G~  215 (470)
                      .+++.++..+...+.+++..++..|.+|     +...  .+|.++.+++.+..++.        ..+++.+++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6788888888888888876654444333     3333  66777777777665431        3467889999999999


Q ss_pred             hccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q 012159          216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      |.....|...+++.+..|++.||+++|++.....+|..+++.+........+|.+.|...++..++..++.+.+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887777788888888887776665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.8e-07  Score=87.12  Aligned_cols=166  Identities=19%  Similarity=0.173  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      +.+....++.|+..........+++.+.++ .|.+..+.....+.+..+.++|.+++.++..|+...|.+.+..++..+.
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            444455566667667777777777776666 8899999999999999999999999999999999999998887665555


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHH
Q 012159          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (470)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  272 (470)
                      ++... ..++ ...+...++.|++.+..+|...++..+..+  +.....|..-....+|+++-|.+.|++.|+.|-...+
T Consensus       316 ~~~~~-l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~  391 (422)
T COG0738         316 LLAVA-LIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTF  391 (422)
T ss_pred             HHHHH-HhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHH
Confidence            54443 4455 344455678899999999999999999998  4445555556667789999999999999999988887


Q ss_pred             HHHHHHHHHHH
Q 012159          273 YIFGLLGIAWF  283 (470)
Q Consensus       273 ~~~~~~~~~~~  283 (470)
                      .+...++.+.+
T Consensus       392 ~~~pllc~lyV  402 (422)
T COG0738         392 LIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHH
Confidence            76666655554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.78  E-value=4e-08  Score=94.85  Aligned_cols=120  Identities=17%  Similarity=0.123  Sum_probs=88.2

Q ss_pred             hhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh---HHHHH
Q 012159          131 VNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG---FMPGL  206 (470)
Q Consensus       131 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~l  206 (470)
                      .......|. +.+.+|.+..+.+++.++..+...++.+++|++.||+|+|+.+..+.....++..++.....   +.+..
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVF  321 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence            344444555 45668999999999999999999999999999999999998887776665555544432222   44444


Q ss_pred             HHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhH
Q 012159          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG  251 (470)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  251 (470)
                      ++..++.+++.+...+...+++.+..| +++|+++|+.+...++|
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       322 IVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            555555566666666667778888887 79999999998887765

>TIGR00788 fbt folate/biopterin transporter

Probab=98.78  E-value=3.2e-08  Score=98.55  Aligned_cols=150  Identities=14%  Similarity=0.094  Sum_probs=118.1

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHH
Q 012159          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRVL  212 (470)
Q Consensus       142 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~l  212 (470)
                      +.+|.++.++|++.....++.+++....+++.+|++.|+++.++.++.+++.+......         ++.+.++...++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            56899999999999999999999999999999999999999999888877664432111         222345556678


Q ss_pred             HHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-----chHHHHHHHHH---HHHHHH
Q 012159          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-----WESVFYIFGLL---GIAWFS  284 (470)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~~~~~~~~~~~---~~~~~~  284 (470)
                      .+++.+........++.+..|++.+|+.+++.++..++|..+++.+++.+.++.|     ++..+....+.   .++.+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~  440 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP  440 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            8888888888889999999999999999999999999999999999999998877     55444433332   233333


Q ss_pred             HHHhhcc
Q 012159          285 GFKILQE  291 (470)
Q Consensus       285 ~~~~~~~  291 (470)
                      ..+++|+
T Consensus       441 ~~~llP~  447 (468)
T TIGR00788       441 LLHLLPR  447 (468)
T ss_pred             HHHhCCC
Confidence            4445553

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.77  E-value=7.2e-11  Score=117.54  Aligned_cols=165  Identities=19%  Similarity=0.091  Sum_probs=107.6

Q ss_pred             hhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH---H-hhhH-
Q 012159          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP---L-LAGF-  202 (470)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~-~~~~-  202 (470)
                      .+......+.+.+.+..+.+..  -.......+...++.+++..+.||+|||++++.+..+.+++.+.++   . ..++ 
T Consensus       267 ~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~  344 (451)
T PF00083_consen  267 SGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS  344 (451)
T ss_pred             cccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3334445556777777777766  2222334455556777778999999999999998888777666553   1 1111 


Q ss_pred             ---HHHHHHHHHHHHhhcc-CchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHH
Q 012159          203 ---MPGLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (470)
Q Consensus       203 ---~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  278 (470)
                         -...++.-.+..++.+ +..+....+.+|.+|.+.|+++.++......++..+++.+...+.+..+-...+++.+++
T Consensus       345 ~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~  424 (451)
T PF00083_consen  345 SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGV  424 (451)
T ss_pred             cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHH
Confidence               0112222222222222 344666788899999999999999999999999999999988888776634455555555


Q ss_pred             HHHH-HHHHHhhccCCC
Q 012159          279 GIAW-FSGFKILQEGET  294 (470)
Q Consensus       279 ~~~~-~~~~~~~~~~~~  294 (470)
                      +++. .+..+++||++.
T Consensus       425 ~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  425 CLIAIIFVYFFLPETKG  441 (451)
T ss_pred             HHHHHhheeEEEeeCCC
Confidence            4444 444555666544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.75  E-value=1.8e-07  Score=93.02  Aligned_cols=122  Identities=7%  Similarity=-0.005  Sum_probs=85.5

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhccCchhhHH
Q 012159          147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSRVLVGIGEGVSPSAAT  225 (470)
Q Consensus       147 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~  225 (470)
                      ++...+.+.+++.++.+++.+++++++||+|+|+++..+..+.++..++..+.+. +...+++..++.|++.+...+...
T Consensus       261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567778888899999999999999999999877555444443333322222 223445555667887777777777


Q ss_pred             HHhhhccC-------ccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc
Q 012159          226 DLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (470)
Q Consensus       226 ~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  268 (470)
                      ++++|..+       .+..|..++.......+|..+|+.++|.+.+..|+
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            78887765       33345666777788899999999999988876555

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.72  E-value=1.6e-07  Score=90.69  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhh-hhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (470)
                      +...++..++......+.+....++. ..+|.+..+..+.......+.+++.+++.++.+|+|+|+++.++.++..++.+
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            33444466666666666666666643 34577777777888888888888899999999999999999999999999888


Q ss_pred             HHHHhh-hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCc-------cchhhHHHHHHhhhhhHHHHHHhhHHhhhccc
Q 012159          195 LLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (470)
Q Consensus       195 ~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (470)
                      ++.+.. ++.+.+++..++.+++.+...+...++++|..+-       +.-|...+.+..+.-+|.+++..+.|++.+..
T Consensus       318 ~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         318 LLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            775544 4567788888999999999999999999987632       33477888888888899999999988888766


Q ss_pred             Cc
Q 012159          267 GW  268 (470)
Q Consensus       267 g~  268 (470)
                      |+
T Consensus       398 Gy  399 (467)
T COG2211         398 GY  399 (467)
T ss_pred             CC
Confidence            54

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.71  E-value=1.8e-08  Score=94.76  Aligned_cols=183  Identities=13%  Similarity=0.053  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHH--------HHHHH-HHHHHHhhhhhHHHhhhhcCcHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL--------VQSSF-FWGYALSQLPGGWLAKIFGGRKVLQT  184 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~~~-~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (470)
                      +.+...+...|+.-+..+..+.....+.+..|+.+.+...        ...+. ..+++.+-.+...++|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5556666667776666677777777788877776554433        11122 22223356677788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-hccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHH
Q 012159          185 GVLIWSLATALLPLLAG---FMPGLVLSRVLVGI-GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (470)
Q Consensus       185 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (470)
                      +.+++++..+.++...+   +...++++..+..+ +.-+.......+.+|.+|.+.|+...|+....+-+|+++|.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999988877753322   11222333333322 222333445667789999999999999999999999999999999


Q ss_pred             hhhc-----ccCchHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012159          261 PIIE-----NLGWESVFYIFGLLGIAWFSGFKILQEGETSN  296 (470)
Q Consensus       261 ~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (470)
                      ++.+     ..|.++++++.+.+.++..+..++++|+....
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~  504 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKS  504 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccC
Confidence            9998     77899999999999999999888888665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.69  E-value=6.5e-07  Score=84.15  Aligned_cols=172  Identities=19%  Similarity=0.147  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhh-hhcCcHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-IFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~  191 (470)
                      ++.+..+++..+...+...+.   =|+=.+-||++..+...+......+..++....|++.. |.+++++..+++.+..+
T Consensus       211 ~~f~~fl~l~t~a~~~QD~iL---EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~  287 (403)
T PF03209_consen  211 RRFFVFLFLGTLAFFMQDVIL---EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL  287 (403)
T ss_pred             hHHHHHHHHHHHHHHhhHHHc---CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            455445544444333322221   23345668999999999999999999999999999887 67888887788777666


Q ss_pred             HHHHHHH--hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc----
Q 012159          192 ATALLPL--LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN----  265 (470)
Q Consensus       192 ~~~~~~~--~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----  265 (470)
                      +..+..+  ...+.+.+...-++.|++.|.+.....+...+...+++.|..+|.+.....++..+|..++|.+.|.    
T Consensus       288 ~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~  367 (403)
T PF03209_consen  288 AFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRAL  367 (403)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6654432  2344578889999999999999999999999999999999999999999999999999999988653    


Q ss_pred             ------cCchHHHHHHHHHHHHHHHHHH
Q 012159          266 ------LGWESVFYIFGLLGIAWFSGFK  287 (470)
Q Consensus       266 ------~g~~~~~~~~~~~~~~~~~~~~  287 (470)
                            .+|..+|.+.+++.++.+.+..
T Consensus       368 ~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  368 FGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence                  2356666666666555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=7.9e-08  Score=88.91  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=123.7

Q ss_pred             HHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHH--HHHHHHHHHHHHHHhh
Q 012159          124 VICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT--GVLIWSLATALLPLLA  200 (470)
Q Consensus       124 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~--~~~~~~~~~~~~~~~~  200 (470)
                      ..........-+.++. +.+.+..+..+.|+..--..+.+.++..+.|.+.||++..+++..  +++..++..... ...
T Consensus       280 ~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i-P~~  358 (464)
T KOG3764|consen  280 TFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI-PFA  358 (464)
T ss_pred             hhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh-Hhh
Confidence            3334444555556666 667788667799999999999999999999999999995444433  333333333333 245


Q ss_pred             hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCcc------chhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHH
Q 012159          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (470)
Q Consensus       201 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  274 (470)
                      +++..+++-++..|++.+..............+.+      ..|...++...++.+|.++||.++|.+.+..|++|...+
T Consensus       359 ~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~i  438 (464)
T KOG3764|consen  359 TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTI  438 (464)
T ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHH
Confidence            66678888888888887777666655555555332      457899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 012159          275 FGLLGIAWFSGFKILQE  291 (470)
Q Consensus       275 ~~~~~~~~~~~~~~~~~  291 (470)
                      .++..++...++..++.
T Consensus       439 ig~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  439 IGILNLIYAPVLLLLRI  455 (464)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988777666555543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.63  E-value=7.6e-07  Score=87.46  Aligned_cols=158  Identities=11%  Similarity=-0.011  Sum_probs=101.7

Q ss_pred             HHHHHhhhhhHHHhHHhh-hhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH---
Q 012159          123 FVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL---  198 (470)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---  198 (470)
                      .++.......+....|.+ .+.+|.+..+.++.......+..++..+.+++.++..+++.+.....+..++.+++..   
T Consensus       227 ~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~  306 (413)
T PRK15403        227 LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL  306 (413)
T ss_pred             HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455566764 4556999999999988888888888888888775554444432222222222222211   


Q ss_pred             -hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHH
Q 012159          199 -LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (470)
Q Consensus       199 -~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  277 (470)
                       ..++++..++..++.++|.+...|......-. -....+|++.++.+.....+..+++.+++++.++ +-++.|...++
T Consensus       307 ~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~  384 (413)
T PRK15403        307 LWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAV  384 (413)
T ss_pred             HccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHH
Confidence             22333345677788888888877777643321 1223579999999999989999999999988776 66677776666


Q ss_pred             HHHHH
Q 012159          278 LGIAW  282 (470)
Q Consensus       278 ~~~~~  282 (470)
                      +..+.
T Consensus       385 ~~~~~  389 (413)
T PRK15403        385 VAGVI  389 (413)
T ss_pred             HHHHH
Confidence            54443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.58  E-value=0.00015  Score=71.66  Aligned_cols=285  Identities=10%  Similarity=0.000  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHH-HHHHhhhhhHHHhhhhcCcHHHHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLI  188 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~  188 (470)
                      ..++.++.+.+.+++..+..+..-..=-. +...  .+++.+..+=....+ ...+...+..++++++++.+++-+....
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~--~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~   98 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVTA--QGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEec--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34555666666666665555443332111 1111  255556665554444 3445677899999999999988877666


Q ss_pred             HHHHHHHHHHhh--------hH----------------------HHHHHHHHHHHHhhccCchh-hHHHHhhhccCccch
Q 012159          189 WSLATALLPLLA--------GF----------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEER  237 (470)
Q Consensus       189 ~~~~~~~~~~~~--------~~----------------------~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r  237 (470)
                      +.....+++++-        ++                      .|...+..+..-+-.....+ ....+..|.++.+|-
T Consensus        99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA  178 (491)
T PF03219_consen   99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA  178 (491)
T ss_pred             HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            555555544321        00                      12222333333333333333 468889999999999


Q ss_pred             hhHHHHHHhhhhhHHHHHHhhHHhhhc---------ccCchHHHHHHH----HHHHHHHHHHHhhccCCCCCCCCCCCcc
Q 012159          238 SRAVSFVFGGLSFGSVAGLLLAPPIIE---------NLGWESVFYIFG----LLGIAWFSGFKILQEGETSNGATLAPRS  304 (470)
Q Consensus       238 ~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (470)
                      .|..+++..+.++|.++++.+..++.+         ...|...+....    +.+++.......+.+....++.......
T Consensus       179 KRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~  258 (491)
T PF03219_consen  179 KRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAK  258 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhh
Confidence            999999999999999999998888877         123543332222    1122222222223221111111000000


Q ss_pred             chhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh---hHHHHHHH
Q 012159          305 NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE---AAWVSILP  381 (470)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~---~~~~~~~~  381 (470)
                      +          ......+..-..+++.++++|.+..+++...+++.....+....-..+++.+.-+.+.   .|-.....
T Consensus       259 ~----------~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~t  328 (491)
T PF03219_consen  259 K----------KKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWT  328 (491)
T ss_pred             c----------ccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            0          0000000011124577889999999999888888888888777777777654332222   23445556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          382 PLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       382 ~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      ++..++..++++.+.+|+|.+....+
T Consensus       329 Givtii~~~l~~~iir~~GW~~~Ali  354 (491)
T PF03219_consen  329 GIVTIIMMFLSSNIIRRFGWRTAALI  354 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            66777777888999999998864443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.57  E-value=2.6e-06  Score=85.70  Aligned_cols=136  Identities=16%  Similarity=0.057  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHHHHhhhhh----HHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHhhcc
Q 012159          151 AGLVQSSFFWGYALSQLPG----GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF--------MPGLVLSRVLVGIGEG  218 (470)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~  218 (470)
                      .+++.++..+...+..++.    +++.+|++..+.+.++.++.+++.++++.....        .+.++...++.|+|+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4566666666666666655    555666666688888999988888776543321        3578889999999999


Q ss_pred             CchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc----------ccCchHHHHHHHHHHHHHHHHH
Q 012159          219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------NLGWESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~  286 (470)
                      ...|...+++.+..|++.||+++|++.....+|..++..+.+....          ..++.+.|...++++++..+++
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888777777777666643210          1136678887777665444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.55  E-value=2.2e-06  Score=84.37  Aligned_cols=179  Identities=10%  Similarity=-0.008  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhh-hcCCCch------h----hHHHHHHHHHHHHHhhhhhHHHhhhhcC-cH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSH-RFGWNSS------V----AGLVQSSFFWGYALSQLPGGWLAKIFGG-RK  180 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~s~~------~----~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~  180 (470)
                      +.+..+++.+++..+....+..+... +.+ -++.++.      +    -.+....+.+...+.+++.-++.+|+|+ |+
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~  337 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            45666777788888777766666554 332 2333221      1    2244455666666777788889999985 67


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh---H-----------------HHHHHHHHHHHHhhccCchhhHHHHhhhccCc--cchh
Q 012159          181 VLQTGVLIWSLATALLPLLAG---F-----------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERS  238 (470)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~---~-----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~  238 (470)
                      +..++.++.++++....+...   +                 .+..++...+.|+..+.....-++++++..++  ++.|
T Consensus       338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G  417 (477)
T TIGR01301       338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG  417 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence            778887777777766543332   1                 25677788889999999999999999999984  4569


Q ss_pred             hHHHHHHhhhhhHHHHHHhhHHhhhcccC--chHHHHHHHHHHHHHHHHHHhhccC
Q 012159          239 RAVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFKILQEG  292 (470)
Q Consensus       239 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  292 (470)
                      ..+|+.+.+..+..++..+..|.+.+.+|  -.+++.+.++..++..+..+++.++
T Consensus       418 ~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       418 LSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999988888666555  5667777787777766655554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=3.3e-05  Score=74.87  Aligned_cols=235  Identities=17%  Similarity=0.122  Sum_probs=144.5

Q ss_pred             hHHH-HHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhh
Q 012159          151 AGLV-QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (470)
Q Consensus       151 ~~~~-~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~  229 (470)
                      .|.. .++......+..++.+.+.|+.|.|+.+.++...+.+..+.+ +..+ -+.++....+.|+|.+..+.....+++
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf-l~~N-~y~~yfssallG~Gaallw~GqG~ylt  128 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF-LFPN-SYYLYFSSALLGFGAALLWTGQGGYLT  128 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH-Hhcc-hHHHHHHHHHhhhhHHheecccceehh
Confidence            3443 677788888999999999999999999999999887776554 3444 478899999999999999999999999


Q ss_pred             hccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc--------Cch-H----------HHHHHHHHHHHH---HHHHH
Q 012159          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--------GWE-S----------VFYIFGLLGIAW---FSGFK  287 (470)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------g~~-~----------~~~~~~~~~~~~---~~~~~  287 (470)
                      +...++.+.+..++.......+.++|..+...+..+.        +.+ +          ...+.+++..+.   .+...
T Consensus       129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~  208 (461)
T KOG3098|consen  129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD  208 (461)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee
Confidence            9999999999999988888888888876654443221        111 1          111111111111   11111


Q ss_pred             hhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 012159          288 ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-  366 (470)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-  366 (470)
                      +.+.+......+.. +..       ..+.         .....+.+++++...+....+..+..........|..+.-. 
T Consensus       209 ~~p~~~~~~~~~~~-~~~-------~~~~---------l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~  271 (461)
T KOG3098|consen  209 FLPSKDVVNCKSSS-ETS-------FSEL---------LKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR  271 (461)
T ss_pred             ecCccchhhhhhhc-ccc-------HHHH---------HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence            11111100000000 000       0000         01124567788887777666666555554555555554432 


Q ss_pred             -hCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012159          367 -LSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (470)
Q Consensus       367 -~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  404 (470)
                       .+.+ ....++.....+++.+++....+.+.+|.++...
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~  311 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGR  311 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence             1222 2334555666677777777888888877665543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.46  E-value=2.6e-05  Score=71.99  Aligned_cols=262  Identities=13%  Similarity=0.086  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhh-----hhcCcHHHHH-HH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQT-GV  186 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~-~~  186 (470)
                      ++.+..+.+.+.++++-..... .+|.+.+.-|.|.++.+....++. .+ -.-++|.++.|     |+||||..++ +.
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-PF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-HH-HHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            4555666677888888777777 899988877888877665433222 22 34578999999     9999886554 33


Q ss_pred             HHHHHHHHHHHHhh----------hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHH
Q 012159          187 LIWSLATALLPLLA----------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (470)
Q Consensus       187 ~~~~~~~~~~~~~~----------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  256 (470)
                      .+.+..+.+++...          ++...+....++.-+..+....+.-.+.-.+..+++.|-+......+...|.+++.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            33333333333222          12223334556667777788888888888888889999888888888888877776


Q ss_pred             hhHHhhhc-------ccCc---------hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhh
Q 012159          257 LLAPPIIE-------NLGW---------ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEM  320 (470)
Q Consensus       257 ~~~~~l~~-------~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (470)
                      .+.-.+..       ..+|         ...++..+.+.++.-....+..++++.. ..++....   ..+.        
T Consensus       187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~-~~~e~~~~---i~~~--------  254 (510)
T KOG3574|consen  187 VVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES-VDEELELG---IHES--------  254 (510)
T ss_pred             ceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-hhhhhhcC---HHHH--------
Confidence            55433332       0112         2334444555444444444443333222 11000000   0000        


Q ss_pred             hccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 012159          321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF  395 (470)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l  395 (470)
                           ..-++++++-|.+..++......-.++.+.....+.-+.| .|++..+.+++..+..-..++.....|++
T Consensus       255 -----yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~  323 (510)
T KOG3574|consen  255 -----YKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKW  323 (510)
T ss_pred             -----HHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheee
Confidence                 1123567777888888888888888888888888888886 59999888766544444444444444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.46  E-value=3.5e-06  Score=83.34  Aligned_cols=121  Identities=14%  Similarity=0.227  Sum_probs=97.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcch------
Q 012159          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL-IATGVETT------  407 (470)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~------  407 (470)
                      .+.++.++...+...+.++++..++|.|+++.+|+++.+++.+...+.+...++.+++|+++||+ |+|+....      
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~   87 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA   87 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence            35677777788888889999999999999988999999999999999999999999999999999 98876553      


Q ss_pred             ----------------------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCc
Q 012159          408 ----------------------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHS  435 (470)
Q Consensus       408 ----------------------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~  435 (470)
                                                                          .++.+..+.+|+.++|.+.|++.+..+ 
T Consensus        88 lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-  166 (493)
T PRK15462         88 IGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-  166 (493)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-
Confidence                                                                677788888999999999999987654 


Q ss_pred             eehhhHHHHHHHHHHHHHHHhh
Q 012159          436 WSMSLFAPSIFFYLTGTIVWLA  457 (470)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~  457 (470)
                      |...|.+.++. .+.+.+.+..
T Consensus       167 w~~~F~iaaig-m~l~li~~~~  187 (493)
T PRK15462        167 WAMGFGLAAVG-MIAGLVIFLC  187 (493)
T ss_pred             hHHHHHHHHHH-HHHHHHHHHH
Confidence            55565554443 3344444443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.45  E-value=1.2e-05  Score=66.22  Aligned_cols=109  Identities=16%  Similarity=0.131  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhcc
Q 012159          153 LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (470)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~  232 (470)
                      .-.++......+..++.+.+.+++|.|+.++++.+.+.+-....  ..++.+.++..-++.|++.+..|++...++.+..
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~--~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF--FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            34556666677888889999999999999999999887554433  4455588999999999999999999999999999


Q ss_pred             CccchhhHHHHHHhhhhhHHHHHHhhHHhhh
Q 012159          233 PLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (470)
Q Consensus       233 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (470)
                      .++++++..+++......+.++|.++.-.+.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.2e-06  Score=76.78  Aligned_cols=252  Identities=15%  Similarity=0.058  Sum_probs=146.2

Q ss_pred             hhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012159          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (470)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (470)
                      .+-...+++.-.+.+.+|+...++|.+........++...+.|-++||-|||+..+.-++.+.++++-  -.++.+-.++
T Consensus        51 AgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT--KhSpqYkVLm  128 (454)
T KOG4332|consen   51 AGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT--KHSPQYKVLM  128 (454)
T ss_pred             hhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh--hcCCceEEEe
Confidence            33444556666677889999999999988888888899999999999999999876665555444422  2345567899


Q ss_pred             HHHHHHHhhccCchhhHHHHhhhccCccchhhHHHH--------HHhhhhhHHHHHHhhHHhhhccc--CchHHHHHHHH
Q 012159          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF--------VFGGLSFGSVAGLLLAPPIIENL--GWESVFYIFGL  277 (470)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~--------~~~~~~~g~~~g~~~~~~l~~~~--g~~~~~~~~~~  277 (470)
                      ++|++.|+..+..+.+..++...--. ++|+.-.-+        ...+..+-.+++.+.+..+.+.+  |.-.+|-..+.
T Consensus       129 VGR~LGGiaTsLLFSaFEsWliaEHn-ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAac  207 (454)
T KOG4332|consen  129 VGRVLGGIATSLLFSAFESWLIAEHN-EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAAC  207 (454)
T ss_pred             ehhhhhhHHHHHHHHHHHHHHHHHhh-hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHH
Confidence            99999999999888888777643322 233322222        12334455566666666666654  45556665555


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012159          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (470)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (470)
                      +..+...+.+.-..+.-.++   .+.++.....               +...+.+..++++.++.....++-...+.+.+
T Consensus       208 fLaigmAvil~~W~ENygdp---s~~kdlltqf---------------~gaa~aiaSD~ki~LLG~iqsLFE~smytFVF  269 (454)
T KOG4332|consen  208 FLAIGMAVILSSWSENYGDP---SENKDLLTQF---------------KGAARAIASDEKIALLGAIQSLFEGSMYTFVF  269 (454)
T ss_pred             HHHHHHHHHHhhhhhccCCh---hhhHHHHHHh---------------hHhHHHHhcchHHHHHHHHHHHHhhhhheeee
Confidence            44333222221111111000   0000000000               01124556677776665555555444444433


Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      ....-+..  +-...--|.+++.+.+++++|+-+..++..|-..+
T Consensus       270 LWTPaLsp--n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~  312 (454)
T KOG4332|consen  270 LWTPALSP--NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPK  312 (454)
T ss_pred             eecccCCC--CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcc
Confidence            32222220  11122347788888888888888877776654443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.43  E-value=8.7e-06  Score=82.38  Aligned_cols=180  Identities=19%  Similarity=0.108  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      ++.+..+.+..+....+......+.+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.++
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~  372 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC  372 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence            34444555555555555666666778888888877554 55666677777788888899999999999999999999888


Q ss_pred             HHHHHHhhhH------------HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHH
Q 012159          193 TALLPLLAGF------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (470)
Q Consensus       193 ~~~~~~~~~~------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (470)
                      .++++.....            +..+....+.......+..+....+.+|.+|.+-|+++.++......+...+-.....
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~  452 (513)
T KOG0254|consen  373 LVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP  452 (513)
T ss_pred             HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8776533211            1122223333333334455666788899999999999999988777766655554444


Q ss_pred             hhhcccCchHHHHHHHHHHHHHHH--HHHhhccCC
Q 012159          261 PIIENLGWESVFYIFGLLGIAWFS--GFKILQEGE  293 (470)
Q Consensus       261 ~l~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~  293 (470)
                      .+.+..++...|...+..+.+...  ..+++||++
T Consensus       453 ~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  453 FITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            444444445566666665544444  445555544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.43  E-value=7.6e-06  Score=81.93  Aligned_cols=138  Identities=14%  Similarity=0.040  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHhhhhcCcHH-------HHHHHHHHHHHHHHHH-----Hh----hhHHHHHHHHHHHHH
Q 012159          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKV-------LQTGVLIWSLATALLP-----LL----AGFMPGLVLSRVLVG  214 (470)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~-----~~----~~~~~~l~~~~~l~G  214 (470)
                      .+++.++..+...+..++.+++.||+++|+.       +.++.++.+++.+.++     ..    ..+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3455566667777888899999999999873       6677777666654321     11    123566778889999


Q ss_pred             hhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc----------ccCchHHHHHHHHHHHHHHH
Q 012159          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------NLGWESVFYIFGLLGIAWFS  284 (470)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~  284 (470)
                      +|.+...+...+++.+..|++.++.++|++.....+|..+|..++.....          .-.+.+.|...++..++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865521          11245667777766655544


Q ss_pred             HHHh
Q 012159          285 GFKI  288 (470)
Q Consensus       285 ~~~~  288 (470)
                      +++.
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            4433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.40  E-value=2.4e-06  Score=61.27  Aligned_cols=71  Identities=21%  Similarity=0.159  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (470)
                      +-..+++.+.......+++|...++.|+++.++|.+.++..+...++++++|.++||+++++.++....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34456666677778888899988999999999999999999999999999999999999999888765543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.35  E-value=7.1e-06  Score=79.14  Aligned_cols=76  Identities=14%  Similarity=0.074  Sum_probs=61.0

Q ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      .++.++....+++...+..++...+.+++=-++++ ++-.+...|.+......+.++.-++.+++.+|+|+.+++..
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~l  441 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYL  441 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeee
Confidence            45667777777777777778777788888777775 46677777888888888999999999999999998877665

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.33  E-value=2.4e-06  Score=84.43  Aligned_cols=164  Identities=17%  Similarity=0.228  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh----hcCcHHHHHHHHHH
Q 012159          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGVLIW  189 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~~~  189 (470)
                      .++..+++.++.....+.+...+|.+.++ .|++..+.+.+.+.+.++.+++.+++|.++||    ..+|........++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34566777888888888899999997777 56999999999999999999999999999999    66777666666555


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccch-hhHHHHHHhhhhhHHHH-HHhhHHhhhcccC
Q 012159          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER-SRAVSFVFGGLSFGSVA-GLLLAPPIIENLG  267 (470)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~g  267 (470)
                      .+...+.....+.........+....+.....+......++...+..| -...+....+.+.++++ ++...+.....++
T Consensus       354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~  433 (495)
T KOG2533|consen  354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG  433 (495)
T ss_pred             HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence            544422222233223333333444444555667777777777754443 33334444444444444 4444444555678


Q ss_pred             chHHHHHHHHH
Q 012159          268 WESVFYIFGLL  278 (470)
Q Consensus       268 ~~~~~~~~~~~  278 (470)
                      |.+.|......
T Consensus       434 ~~~~f~~~~~~  444 (495)
T KOG2533|consen  434 WGAVFYMLVAA  444 (495)
T ss_pred             hhhHHHHHHHH
Confidence            88888554443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.32  E-value=0.00027  Score=67.48  Aligned_cols=133  Identities=15%  Similarity=0.087  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhh
Q 012159          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR  230 (470)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~  230 (470)
                      .+.+.-+-.+...+..+.+.++.+|+..+.-+.+..+++.+++++.+ .+++.+.-+++-++.+++.|........+.. 
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va-~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVA-FSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhhee-eccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            34466666777888888899999998866656666677777777664 5566788888889999999888888777644 


Q ss_pred             ccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC--chHHHHHHHHHHHHHHHHHHhhc
Q 012159          231 SIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       231 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      .+++    ...+-+.++.+.++++|+..--.+.. .|  .|..+++...+.++..+..+++.
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L  195 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLL  195 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5553    35788899999999999988777766 55  47778877777665555544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.31  E-value=4.5e-06  Score=60.30  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=67.7

Q ss_pred             HHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q 012159          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (470)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  201 (470)
                      .++.+..+++.+|.+.++.++|..+.|++.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++..+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4577889999999999999999999999999999999999999999999988889999998888888877754433

Note that many members are hypothetical proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=98.30  E-value=6.1e-06  Score=83.20  Aligned_cols=173  Identities=10%  Similarity=0.001  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHhhhhhc-CCCc-hhhHH-HHHHHHHHHHHhhhhhHHHhhh---------hcCcHHH
Q 012159          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRF-GWNS-SVAGL-VQSSFFWGYALSQLPGGWLAKI---------FGGRKVL  182 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~-~~~~~-~~~~~~~~~~~~~~~~g~l~dr---------~g~r~~~  182 (470)
                      -++++++.+++.......+..-+.++.+.+ |.+. .+... +.++..++..+|.+..|.+...         +.|--.+
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l  433 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIAL  433 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHH
Confidence            345556666665555444555566788888 6623 32233 7889999999999999988721         2222233


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHH-HhhHHh
Q 012159          183 QTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG-LLLAPP  261 (470)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g-~~~~~~  261 (470)
                      .+..+ +.++.+++++..+. ..+++..++.|++.|..++.....++|+|. |+-|+-..+......+|..+- ..+.|.
T Consensus       434 ~~~~~-~~~~~lll~~~~p~-~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~  510 (591)
T PTZ00207        434 FIPSV-CIITMLTLFLTLPK-AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE  510 (591)
T ss_pred             HHHHH-HHHHHHHHHHHCCc-cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence            33334 55555555443332 578999999999999999999999999999 999999999888888888776 667888


Q ss_pred             hhccc----------C---chHHHHHHHHHHHHHHHHHHhhc
Q 012159          262 IIENL----------G---WESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       262 l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      ++|+.          |   ++.+|++.++++++..+....+.
T Consensus       511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            87532          2   68899999998887776655554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.25  E-value=1.2e-05  Score=74.26  Aligned_cols=132  Identities=21%  Similarity=0.142  Sum_probs=105.9

Q ss_pred             HHHhHHhh-hhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhc--CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012159          133 LSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (470)
Q Consensus       133 ~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (470)
                      +....+.+ .+.+|+++.|.|-+.+...+...+.+....+..||..  -+..+..+..++.-..++.. .......+.+.
T Consensus       280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-~~~~~~~l~~~  358 (451)
T KOG2615|consen  280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-LARTPVVLYLG  358 (451)
T ss_pred             HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-ccccchhhhHH
Confidence            33333443 4678999999999999999999999999999999887  56666666555444444443 33444677888


Q ss_pred             HHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc
Q 012159          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (470)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (470)
                      ..+..+..+...+....++....|.++||.++|+......++-++||+++|.+..+
T Consensus       359 s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  359 STLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            88888988888899999999999999999999999999999999999999987653

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.25  E-value=0.0054  Score=59.31  Aligned_cols=280  Identities=11%  Similarity=-0.024  Sum_probs=160.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcC---CCchhhHHHHHHHHH-HHHHhhhhhHHHhhhhcCcHHHHHHH
Q 012159          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGV  186 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (470)
                      ..++.++.+.+.+++..+..+..-    .+.+.+.   .++..+.++-+...+ +..+..++.+++.+++.+.+++-+..
T Consensus        24 ~E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~   99 (509)
T COG3202          24 YELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIIL   99 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            345556666666666555444333    3444443   456677777777777 66788899999999999999988877


Q ss_pred             HHHHHHHHHHHHhhh--------H-----------------------HHHHHHHHHHHHhhccCchh-hHHHHhhhccCc
Q 012159          187 LIWSLATALLPLLAG--------F-----------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPL  234 (470)
Q Consensus       187 ~~~~~~~~~~~~~~~--------~-----------------------~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~  234 (470)
                      ..+....++++++-.        +                       -|...+..++.-+-.+.... .......|.+..
T Consensus       100 ~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~  179 (509)
T COG3202         100 GFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTI  179 (509)
T ss_pred             HHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            666666666553321        0                       02222222222222222222 456677888888


Q ss_pred             cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC----------chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q 012159          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG----------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS  304 (470)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (470)
                      +|-.|.+++++.+.+++..++..+..++..+..          .+..+.+.++.+++......++.+.-...+....+..
T Consensus       180 ~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~  259 (509)
T COG3202         180 EEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAK  259 (509)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHh
Confidence            999999999999999999999998888876321          2333333444434444443333322111111000000


Q ss_pred             chhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhH---HHHHHH
Q 012159          305 NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA---WVSILP  381 (470)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~---~~~~~~  381 (470)
                      +.         ...+..+..-..+++.+.++|-++.+++...+++.+...+-...-.-.++.+-...+..+   -+....
T Consensus       260 ~k---------k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~t  330 (509)
T COG3202         260 KK---------KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWT  330 (509)
T ss_pred             cc---------cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHH
Confidence            00         000000000012356778889999999888888888777766555555544333333222   233334


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhcC
Q 012159          382 PLA-SVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       382 ~~~-~~~~~~~~g~l~dr~~~~~  403 (470)
                      ++. .++...+++.+.+|.|...
T Consensus       331 gvv~~v~~~~~~s~~ir~~GW~~  353 (509)
T COG3202         331 GVVSLVVFLFPGSNLIRRVGWFT  353 (509)
T ss_pred             HHHHHHHHHhhhHHHHHHhhHHH
Confidence            444 4555667788888888664

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.23  E-value=2.1e-05  Score=78.92  Aligned_cols=181  Identities=16%  Similarity=0.143  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhh-hhhcCCCc---hhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHH-HHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNS---SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL-QTGVLI  188 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~  188 (470)
                      +.+...++..++.++.......+.|.. ..-++-+.   ...++......++..++..+.|.+..++++-|.. +++.++
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~  389 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL  389 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            445555555666666556666666663 33444444   3578888889999999999999999988875544 566656


Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc--
Q 012159          189 WSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--  265 (470)
Q Consensus       189 ~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--  265 (470)
                      +.++.-+++.. .++....+..-++.|++.|...........-..|+++.+.+.|+......+|+.+|..+..-+...  
T Consensus       390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~  469 (599)
T PF06609_consen  390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKL  469 (599)
T ss_pred             HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            55544344322 334445667788899999888878777777788989999999999999999988887765433210  


Q ss_pred             ------------------------------------------------------------cCchHHHHHHHHHHHHHHHH
Q 012159          266 ------------------------------------------------------------LGWESVFYIFGLLGIAWFSG  285 (470)
Q Consensus       266 ------------------------------------------------------------~g~~~~~~~~~~~~~~~~~~  285 (470)
                                                                                  .++|++|+....++.+.+++
T Consensus       470 ~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiia  549 (599)
T PF06609_consen  470 PKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIA  549 (599)
T ss_pred             hHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                        04588888888888888888


Q ss_pred             HHhhccCCC
Q 012159          286 FKILQEGET  294 (470)
Q Consensus       286 ~~~~~~~~~  294 (470)
                      .+++++.++
T Consensus       550 a~fl~d~~~  558 (599)
T PF06609_consen  550 ALFLGDIDK  558 (599)
T ss_pred             HHHcCChHH
Confidence            888876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.06  E-value=2.5e-05  Score=55.98  Aligned_cols=65  Identities=20%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012159          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (470)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~  405 (470)
                      .+-..+++...+...+..++|.|+++ .|+++.+.|++.++..+..+++.+++|+++||.++++..
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            45566777788888999999999995 799999999999999999999999999999999999743

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.04  E-value=4.6e-05  Score=77.43  Aligned_cols=156  Identities=17%  Similarity=0.057  Sum_probs=104.7

Q ss_pred             HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHH
Q 012159          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP--GLVLSRVLVG  214 (470)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~l~G  214 (470)
                      ++.....+|.+.....   ..............+...|++|||.....+.++..++.++.++......  ...+...+..
T Consensus       341 l~~~~~~lg~~~~~~~---~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
T KOG0255|consen  341 LSLNVSGLGGNIYLNF---TLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGK  417 (521)
T ss_pred             hhhhhhhcCchHHHHH---HHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            4444445554443333   3333344455555689999999999999999998888888766554322  3555555556


Q ss_pred             hhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHH-HHHHhhccCC
Q 012159          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF-SGFKILQEGE  293 (470)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~  293 (470)
                      ++.+..+.....+.+|.+|...|..+.+.......+|.+++|.+...... ......+.+.+.+..+.. +...++||+.
T Consensus       418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            66666667779999999999999999999999999999999988765544 222223333354444444 4447777765


Q ss_pred             CCC
Q 012159          294 TSN  296 (470)
Q Consensus       294 ~~~  296 (470)
                      ...
T Consensus       497 ~~~  499 (521)
T KOG0255|consen  497 GKP  499 (521)
T ss_pred             CCC
Confidence            543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.94  E-value=0.00032  Score=69.01  Aligned_cols=124  Identities=21%  Similarity=0.217  Sum_probs=105.9

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhhhhH-HHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 012159          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG-WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE  217 (470)
Q Consensus       139 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  217 (470)
                      .+...++++..+.+...+...+...+++++.. .+...+|-|+++.+|++...+..+..+ +.+..|+++...++.++. 
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~~v~~~~~-  344 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA-FATETWMMFAAGVVVALA-  344 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH-HhccchhhhHHHHHHHhh-
Confidence            35667899999999999999999999998877 677788999988899888888887776 445558888877777666 


Q ss_pred             cCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc
Q 012159          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (470)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (470)
                      ....|...+.++.+..++++|+++++......+...++|.+-+.+..
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            57789999999999999999999999999999999999999888754

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.85  E-value=0.00011  Score=71.01  Aligned_cols=111  Identities=21%  Similarity=0.268  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHh--hhH------HHHHHHHHHHHHhhccCchhhHHHHhhhccCcc---chhhHHHHHHhhh
Q 012159          180 KVLQTGVLIWSLATALLPLL--AGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGL  248 (470)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~--~~~------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  248 (470)
                      |++.++.+++.+|.+++...  ...      .+.++++.++.++|.|+.-|...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            46777888888888774322  222      246888889999999999999999999999765   5677888899999


Q ss_pred             hhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhc
Q 012159          249 SFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       249 ~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      ++|..+++.+.+++-++.||.+.|.+.++..++..+.++.-.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999988877776655543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.70  E-value=0.0012  Score=63.03  Aligned_cols=116  Identities=17%  Similarity=0.078  Sum_probs=80.4

Q ss_pred             cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHH--HHHHHHH--HhhhHHHHHHHHHHHHHhhccC
Q 012159          144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS--LATALLP--LLAGFMPGLVLSRVLVGIGEGV  219 (470)
Q Consensus       144 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~--~~~~~~~--~~~~~~~~l~~~~~l~G~~~~~  219 (470)
                      +.-...+.-+...+|.+|..++.--...+  |+  |++.+.+.+-..  +..++-+  .+.++.|.+++..+..|+..|.
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence            33345677788888888777665432221  33  444444332221  1111111  1235567788888999999999


Q ss_pred             chhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh
Q 012159          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (470)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (470)
                      .+......+.+..++++|..++|....+-++|..++.+++-.+-
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988876553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.69  E-value=0.0045  Score=62.27  Aligned_cols=138  Identities=17%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHH-HHHHHH-HHHHHHHHhh----hHHHHHHHHHHHH
Q 012159          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWS-LATALLPLLA----GFMPGLVLSRVLV  213 (470)
Q Consensus       140 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~-~~~~~~~~~~----~~~~~l~~~~~l~  213 (470)
                      +..-+|-+..+.+.+.+++.++..+|+.+++++.++.-++...+- ...+.+ ++..++....    .....++...++.
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334578888999999999999999999999988744332222111 111111 1111111111    1112233444566


Q ss_pred             HhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-ccCchHHHHHHHHH
Q 012159          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWESVFYIFGLL  278 (470)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~~~~~~~~~~~  278 (470)
                      ++..|+..|....+..+... ++-++..|-.+....+|+++|.++.+++.- .+|-..+.++.+.+
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l  185 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL  185 (521)
T ss_pred             HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            77777777777766655332 345677888888899999999988887653 66755444444443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.68  E-value=0.0055  Score=59.44  Aligned_cols=276  Identities=11%  Similarity=-0.014  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHhhhhh--cCCCchhhHHHHHHHHHHHHHhhhhhHHHhh-----hhcCcHHHHHH-HHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQTG-VLIW  189 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~-~~~~  189 (470)
                      ++.+.+++++.-.+.....+|.+.++  -+.+..|.+...- ....+. .-++|.++.|     |+||||..++- -.+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSl-a~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSL-ASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeee-eechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            45566777776666555568887777  6778887765322 111211 3356666666     78999976653 2333


Q ss_pred             HHHHHHHHHhh----------h-----------H--HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHh
Q 012159          190 SLATALLPLLA----------G-----------F--MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG  246 (470)
Q Consensus       190 ~~~~~~~~~~~----------~-----------~--~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  246 (470)
                      ++.++.++...          +           +  ...+....++.=+..+....+.-.+.-.+..+++++.+......
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            33333332222          0           0  01123333344445566667777777777788999988888888


Q ss_pred             hhhhHHHHHHhhHHhhhcc-------------cC---chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC-Cccchhh-
Q 012159          247 GLSFGSVAGLLLAPPIIEN-------------LG---WESVFYIFGLLGIAWFSGFKILQEGETSNGATLA-PRSNYIN-  308 (470)
Q Consensus       247 ~~~~g~~~g~~~~~~l~~~-------------~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  308 (470)
                      +.++|..++..+.-.+-+.             .|   ...-..+.|.+.++..+...+++++++..+.... +..+... 
T Consensus       162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~  241 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG  241 (544)
T ss_pred             HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence            8888888876655444321             01   1122233444444444444454444332211110 0000000 


Q ss_pred             hhhh----hhhhH----Hhhh-ccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 012159          309 MKKS----LSASL----EEMG-ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI  379 (470)
Q Consensus       309 ~~~~----~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  379 (470)
                      ..+.    ..+..    ++.. -...-..+.+++|-|.+..+.+.....-.++...-.....-+.| .|++.++.+++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~l  320 (544)
T PF13000_consen  242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVL  320 (544)
T ss_pred             cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHH
Confidence            0000    00000    0000 00001123456778888888888888888877777777777775 5999998876554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 012159          380 LPPLASVLVTSIAAQFADNLI  400 (470)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~~  400 (470)
                      +    .+...++.|+++.|+.
T Consensus       321 i----~~P~qii~~~~~~Kws  337 (544)
T PF13000_consen  321 I----DFPFQIILPYYIGKWS  337 (544)
T ss_pred             H----hhhHHHHHHHHhhhhh
Confidence            4    4444555555555554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.62  E-value=8.2e-05  Score=70.87  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---------
Q 012159          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------  407 (470)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------  407 (470)
                      .+..+.+...+..+-.+.+...++-. ++.+|.++...|++.....+...+..+++|++.||++|++++..         
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av  112 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV  112 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence            34445555555555555555544443 45689999999999999999999999999999999999998776         


Q ss_pred             ----------------------------------------------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhH
Q 012159          408 ----------------------------------------------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLF  441 (470)
Q Consensus       408 ----------------------------------------------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  441 (470)
                                                                    +++++....+|+.+|.+.++.+.+..+.|+..+.
T Consensus       113 ~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  113 FASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence                                                          8889999999999999999999988888999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCC
Q 012159          442 APSIFFYLTGTIVWLAFASSKP  463 (470)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~  463 (470)
                      +.+++.++++++.++..++.++
T Consensus       193 ~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  193 GSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             eehHHHHHHHHHHHhhccCccc
Confidence            9888888888888887776554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.59  E-value=0.001  Score=61.02  Aligned_cols=258  Identities=12%  Similarity=0.015  Sum_probs=152.3

Q ss_pred             hcCCCchhhH-HHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCch
Q 012159          143 RFGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (470)
Q Consensus       143 ~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  221 (470)
                      +.+++..+.. -+.-+..=.+.+.-++.=.+.|-...|+++++-.+.......++ ...++.+.+=+.-++.|... +..
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~l-v~g~sV~~mQvlE~FyG~~t-AaE  112 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIML-VFGPSVKAMQVLEFFYGPAT-AAE  112 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHH-HhcCCchheeeehhhcChHH-HHH
Confidence            4455555433 12222223344555566678898888888877655444444333 45666677778888888875 445


Q ss_pred             hhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC--chHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 012159          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFKILQEGETSNGAT  299 (470)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (470)
                      .+.++++-...+++++.++.|...+..-.|-.+|..++..+.....  +...=.+.-....+.....+++|++++..-..
T Consensus       113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~  192 (433)
T KOG3810|consen  113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH  192 (433)
T ss_pred             HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence            6778888888899999999999999999999999999988876433  33222233333344455566666655321111


Q ss_pred             CCCccc-hhhhhhhhhh-hHHh-hh--ccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchh
Q 012159          300 LAPRSN-YINMKKSLSA-SLEE-MG--ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELS-LNLTE  373 (470)
Q Consensus       300 ~~~~~~-~~~~~~~~~~-~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~  373 (470)
                      ..+++. ....++...+ +..+ ..  ...-...+....+||++....+...+...+++.+..+......+... -....
T Consensus       193 ~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vy  272 (433)
T KOG3810|consen  193 RLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVY  272 (433)
T ss_pred             cccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhh
Confidence            100000 0000000000 0000 00  00001123456788888888888888888888888887777765421 11122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          374 AAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      .|..-++..+.+.++.+..|.+--++.|.
T Consensus       273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~  301 (433)
T KOG3810|consen  273 NGAVEAVSTLLGAIAALAAGYLNINWNRW  301 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence            35667777788888888888886555554

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.57  E-value=0.0018  Score=63.10  Aligned_cols=77  Identities=13%  Similarity=0.086  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-------------------------
Q 012159          354 TCLSWLPTYFSEELSLNLTE-AAWVSILPPLASVLVTSIAAQFADNLIATGVETT-------------------------  407 (470)
Q Consensus       354 ~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------------------  407 (470)
                      ....+...++.+.+|++..+ .|.+...+..+..+..+++|+++||+|.|+.+..                         
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555677789999999 9999999999999999999999999999987775                         


Q ss_pred             -----------------------------HHHHHHhhhhHHHHHHHHHHHhh
Q 012159          408 -----------------------------MGITNTVGAVPGIVGVALTGYLL  430 (470)
Q Consensus       408 -----------------------------~g~~~~~~~~~~~ig~~~~g~l~  430 (470)
                                                   .+..+....+|.++++++.+++.
T Consensus       123 ~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       123 VFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                         77888888999999999999854

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.49  E-value=0.0044  Score=57.84  Aligned_cols=42  Identities=10%  Similarity=0.022  Sum_probs=39.0

Q ss_pred             HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 012159          366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (470)
Q Consensus       366 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (470)
                      .+|++..+++.++....+.+.+...+.|.++||+|||+....
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~  104 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLL  104 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            589999999999999999999999999999999999987665

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.44  E-value=0.059  Score=49.45  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=52.0

Q ss_pred             HHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhcc
Q 012159          158 FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (470)
Q Consensus       158 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~  232 (470)
                      ..+..+...++.+.++.++|-|+++.++...+......  -.-+.+..++....+.|++.+..+..--+++++.-
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~--Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA--NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--hcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            34444566666779999999999999887766543211  12344578888999999999988877777766544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.34  E-value=0.0071  Score=58.74  Aligned_cols=140  Identities=20%  Similarity=0.091  Sum_probs=103.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHhhhhcCc-------HHHHHHHHHHHHHHHHHHHh----h-----hHHHHHHHHHHHH
Q 012159          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGR-------KVLQTGVLIWSLATALLPLL----A-----GFMPGLVLSRVLV  213 (470)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~----~-----~~~~~l~~~~~l~  213 (470)
                      ...+..++..+..++..++..++..+.+++       .-+.++..+++.+.+++...    .     .+.+.++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            356778888888888888888888885443       23455666666666555332    1     2357888999999


Q ss_pred             HhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHh------hhcccCchHHHHHHHHHHHHHHHHHH
Q 012159          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP------IIENLGWESVFYIFGLLGIAWFSGFK  287 (470)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~------l~~~~g~~~~~~~~~~~~~~~~~~~~  287 (470)
                      ++|+=+..|...+++.+..|+.-.+..++.+......|..++..+++.      ..+.......|+..+...++..+..+
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888888888877773      23344566778888877766655544


Q ss_pred             hh
Q 012159          288 IL  289 (470)
Q Consensus       288 ~~  289 (470)
                      .+
T Consensus       485 ~~  486 (498)
T COG3104         485 LL  486 (498)
T ss_pred             Hh
Confidence            33

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.33  E-value=0.012  Score=59.66  Aligned_cols=176  Identities=18%  Similarity=0.074  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHhhh-hhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDK-VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS  190 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~  190 (470)
                      |+....++....+.-+.. ......+.++..+++.+...+.-....+.-......+.++.++|-| ||-+++.++.++..
T Consensus        36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~  115 (571)
T KOG1237|consen   36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISL  115 (571)
T ss_pred             hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            444444433333333333 3345667778888998888888888888888889999999999965 88888888888777


Q ss_pred             HHHHHHHHhhhH------------------------HHHHHHHHHHHHhhccCchhhHHHHhhhccC---cc-c--hhhH
Q 012159          191 LATALLPLLAGF------------------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP---LE-E--RSRA  240 (470)
Q Consensus       191 ~~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~---~~-~--r~~~  240 (470)
                      ++..++.+.+.-                        ...++...-+..+|.|+.-|...+.-+|-++   ++ +  +...
T Consensus       116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f  195 (571)
T KOG1237|consen  116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF  195 (571)
T ss_pred             HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence            776554322110                        1246666677788999999999999999997   22 2  2367


Q ss_pred             HHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHh
Q 012159          241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (470)
Q Consensus       241 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (470)
                      +.++....++|..++-.+..+.-+..||.+.|.+..+..++.+++++.
T Consensus       196 FnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  196 FNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            888888899999999888888878899999999988876666555443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.26  E-value=0.00097  Score=63.55  Aligned_cols=176  Identities=12%  Similarity=-0.029  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcC-cHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATAL  195 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~  195 (470)
                      .++.+++.+.....+.....+......-|.+....|++.....++.++++.+.|.+.||... |.++++......++.+.
T Consensus       269 ~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~  348 (480)
T KOG2563|consen  269 IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLM  348 (480)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33444444444444555555554445567777889999999999999999999999999865 44555444444444222


Q ss_pred             HHHh---hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC----c
Q 012159          196 LPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG----W  268 (470)
Q Consensus       196 ~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----~  268 (470)
                      +...   ....+.++....+.|++.....|...-+-.|..-|..-+.-.|+.+....+-+++-..+-+...+..+    +
T Consensus       349 l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~  428 (480)
T KOG2563|consen  349 LLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNT  428 (480)
T ss_pred             HHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCC
Confidence            2111   12234566777788998889999988888887766777778888888777777777777777776555    3


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccC
Q 012159          269 ESVFYIFGLLGIAWFSGFKILQEG  292 (470)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~  292 (470)
                      ...-+......++..++..+++++
T Consensus       429 ~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  429 FPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             ccchhHhHHHHHHHHHHHhhhhhh
Confidence            333333344444444444455443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.13  E-value=0.0013  Score=64.22  Aligned_cols=175  Identities=15%  Similarity=0.097  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHh-HHhhhhhcCCCchhhHH----HHHHHHHHHHHhhhhhHHHh-hhhcCcHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGL----VQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTG  185 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~----~~~~~~~~~~~~~~~~g~l~-dr~g~r~~~~~~  185 (470)
                      .|...+.+.+..+............ -+.....++.+..+.-.    ..++..+......+..+... .++.+|+.+..+
T Consensus       260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g  339 (488)
T KOG2325|consen  260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLG  339 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeeh
Confidence            4566666666666666665554444 33455566776665544    33444433333333333333 333455655555


Q ss_pred             HHHHHHHHHHHHHh----h------h--------------------HHHHHHH-HHHHHHhhccCchhhHHHHhhhccCc
Q 012159          186 VLIWSLATALLPLL----A------G--------------------FMPGLVL-SRVLVGIGEGVSPSAATDLIARSIPL  234 (470)
Q Consensus       186 ~~~~~~~~~~~~~~----~------~--------------------~~~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~  234 (470)
                      .++......+....    .      +                    +.+.+++ .-++.|.+.-.......++-++...+
T Consensus       340 ~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp  419 (488)
T KOG2325|consen  340 FLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGP  419 (488)
T ss_pred             HHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCC
Confidence            34333333222110    0      0                    0112233 34566777777777889999999999


Q ss_pred             cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 012159          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  286 (470)
                      ++++.+.++++....++..+||++........|.|+...+.++..++....+
T Consensus       420 ~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  420 RDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             ccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877776655544333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.01  E-value=0.0028  Score=62.54  Aligned_cols=149  Identities=15%  Similarity=0.038  Sum_probs=107.1

Q ss_pred             CCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHhh
Q 012159          146 WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRVLVGIG  216 (470)
Q Consensus       146 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~  216 (470)
                      +++...|.+..+..++..++..+...+.-+..-|+++..+.++.++..+.-....         ++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            8899999999889999999999998888888888888887776655443211111         1112223334555555


Q ss_pred             ccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc--------hHHHHHHHHHHHHHHHHHHh
Q 012159          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW--------ESVFYIFGLLGIAWFSGFKI  288 (470)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~--------~~~~~~~~~~~~~~~~~~~~  288 (470)
                      ....+-....++++..|+..-|..+++..+..++|..++..++..+.+.++.        .+..++..++.++.+....+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            5666677788999999999999999999999999999999999998876652        34445555555555555556


Q ss_pred             hccCCC
Q 012159          289 LQEGET  294 (470)
Q Consensus       289 ~~~~~~  294 (470)
                      +++.++
T Consensus       412 Lp~~~~  417 (433)
T PF03092_consen  412 LPPQKR  417 (433)
T ss_pred             cCCCch
Confidence            665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.97  E-value=0.014  Score=56.80  Aligned_cols=128  Identities=18%  Similarity=0.067  Sum_probs=94.0

Q ss_pred             HHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH---Hhhh------HH
Q 012159          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP---LLAG------FM  203 (470)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~------~~  203 (470)
                      +...+..+....|+++..+|..-+...+....+.+...++.+|+|..+.-+++...-.++..+..   +...      +.
T Consensus       277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            34444455556699999999999999999999999999999999998877776543322221111   1111      22


Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHH
Q 012159          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (470)
Q Consensus       204 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (470)
                      ..++.+-++.=+|.-.+.....-++.|..|+++||...|.-.+..++-..+...++-
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555556667788888999999999999999999999988888777766544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.79  E-value=0.0075  Score=62.54  Aligned_cols=151  Identities=16%  Similarity=0.165  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHH-HHHHhhhhhHHHhhhhcC--cHHHHHHHHHHH
Q 012159          115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGG--RKVLQTGVLIWS  190 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~  190 (470)
                      .++...+..++.......+..++|. +.+.+|+++.+++++.+...+ +.+++.+++|+++||++.  |+.+.++.++..
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~  410 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST  410 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence            3444555555666666666667777 555799999999999988776 568999999999999984  455555555444


Q ss_pred             HHHHHHHH---------------------------hh---------h---------------------------------
Q 012159          191 LATALLPL---------------------------LA---------G---------------------------------  201 (470)
Q Consensus       191 ~~~~~~~~---------------------------~~---------~---------------------------------  201 (470)
                      ++.++...                           .+         .                                 
T Consensus       411 ~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~  490 (633)
T TIGR00805       411 LSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMV  490 (633)
T ss_pred             HHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcce
Confidence            44322110                           00         0                                 


Q ss_pred             -------------------------H-HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhh-hhHHHH
Q 012159          202 -------------------------F-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL-SFGSVA  254 (470)
Q Consensus       202 -------------------------~-~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~  254 (470)
                                               + +..+++..++..+..+.........+-+..|+++|..++|+..... -+|.+-
T Consensus       491 y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP  570 (633)
T TIGR00805       491 YTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIP  570 (633)
T ss_pred             ecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCC
Confidence                                     0 1123333333333333444445556667788899999999966555 468889


Q ss_pred             HHhhHHhhhcc
Q 012159          255 GLLLAPPIIEN  265 (470)
Q Consensus       255 g~~~~~~l~~~  265 (470)
                      +|++.|+++|.
T Consensus       571 ~pi~fG~~iD~  581 (633)
T TIGR00805       571 APILFGLLIDV  581 (633)
T ss_pred             hhHHHhhhhhc
Confidence            99999998886

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.62  E-value=0.02  Score=50.90  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=56.4

Q ss_pred             cchhhHHHHHHhhhhhHHHHHHhhHHhh---hc--ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhh
Q 012159          235 EERSRAVSFVFGGLSFGSVAGLLLAPPI---IE--NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINM  309 (470)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (470)
                      ++|+....+...+.++|.++.-...-..   .+  .-.|++++.+.+++.++.+++..++-.+-...... +++++    
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k----   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEK----   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-ccccc----
Confidence            4566666677777888877664332111   11  12599999998888777766666553321111111 01000    


Q ss_pred             hhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHH
Q 012159          310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (470)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (470)
                               +.....+.....+++|++..|...+.+...-
T Consensus        77 ---------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   77 ---------ENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ---------ccccccccchHHHHHccchHHHHHHHHHHHh
Confidence                     0011112356789999999888776665543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.44  E-value=0.2  Score=47.89  Aligned_cols=118  Identities=17%  Similarity=0.065  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHH--HHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG--VLIWSLATA  194 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~--~~~~~~~~~  194 (470)
                      +..++..+-....+..+....+++.+++-.+.. .-.....+.+...+..++...+--+...|....++  ....++..+
T Consensus        21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i   99 (406)
T KOG1479|consen   21 LIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFI   99 (406)
T ss_pred             HHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445666666677777666643333 33334444444444444444443333322211111  111111111


Q ss_pred             -HHHHhh--------hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccc
Q 012159          195 -LLPLLA--------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE  236 (470)
Q Consensus       195 -~~~~~~--------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  236 (470)
                       .+.+..        ..+...++.-++.+++.+..........++ +|++.
T Consensus       100 ~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen  100 VTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             HHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence             111111        234566677777888888877777776665 45443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.44  E-value=0.00076  Score=68.05  Aligned_cols=153  Identities=21%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHH-HHHHhhhhhHHHhhhhc--CcHHHHHHHHH
Q 012159          113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFG--GRKVLQTGVLI  188 (470)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~~~  188 (470)
                      .+.+....++..........+..+.|. +..+|+.++.+++++..+..+ +.++|.+++|.+..|+.  .|..+....+.
T Consensus       304 Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~  383 (539)
T PF03137_consen  304 NPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV  383 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence            456666777777777777788888887 667899999999998876666 56688899999999875  34444333332


Q ss_pred             HHHHHHH---HHHh--h---------h---------------------------------------HHHHHHHHHHHHHh
Q 012159          189 WSLATAL---LPLL--A---------G---------------------------------------FMPGLVLSRVLVGI  215 (470)
Q Consensus       189 ~~~~~~~---~~~~--~---------~---------------------------------------~~~~l~~~~~l~G~  215 (470)
                      ..+..++   ..+.  .         +                                       .+..+++..++.-+
T Consensus       384 ~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~  463 (539)
T PF03137_consen  384 SIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSF  463 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHH
Confidence            2222211   0000  0         0                                       01123444444444


Q ss_pred             hccCchhhHHHHhhhccCccchhhHHHHHHhhh-hhHHHHHHhhHHhhhcc
Q 012159          216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGL-SFGSVAGLLLAPPIIEN  265 (470)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l~~~  265 (470)
                      ..+.........+-+.+++++|+.++|+..... .+|.+-||++.|.++|.
T Consensus       464 ~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  464 FTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            445555555666678889999999999976554 57889999999999886

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.43  E-value=0.0047  Score=49.81  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=38.1

Q ss_pred             HHHHHHhcCCcchHHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHH
Q 012159          395 FADNLIATGVETTMGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIV  454 (470)
Q Consensus       395 l~dr~~~~~~~~~~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  454 (470)
                      +.|....+..-...+..+....++..+++.+.+.+.+..+ +...+.+......+.....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHH
Confidence            4455544544555788899999999999999999987654 4444444444333333333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.093  Score=51.37  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHh---hhhhcCCCch-hhHHHHHHHHHHHHHhhhhhHHHhh---hhcCcHHHHHHHHHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIP---MSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAK---IFGGRKVLQTGVLIWS  190 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~  190 (470)
                      .+...++..+...+.+....|.   .....+.+.. ..++......++..++..+.+.+.+   ++|+++.+.++..+..
T Consensus       244 ~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~  323 (461)
T KOG3098|consen  244 LLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHL  323 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHH
Confidence            3444455555555555555555   2223333322 2334444445555556666666665   5789999988887776


Q ss_pred             HHHHHHHHhh-----------------hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHH
Q 012159          191 LATALLPLLA-----------------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV  253 (470)
Q Consensus       191 ~~~~~~~~~~-----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  253 (470)
                      ++.++.....                 ++....++..++.|++.+......+.++.+.+| ++|..+.++...-..++..
T Consensus       324 ~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  324 IGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASC  402 (461)
T ss_pred             HHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHH
Confidence            6665543221                 124467788899999999999999999999994 8899998888887777777


Q ss_pred             HHHhhHHh
Q 012159          254 AGLLLAPP  261 (470)
Q Consensus       254 ~g~~~~~~  261 (470)
                      ++-.....
T Consensus       403 v~~f~~~~  410 (461)
T KOG3098|consen  403 VAFFFSPY  410 (461)
T ss_pred             HHhhhhhh
Confidence            66554443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.07  E-value=0.18  Score=49.60  Aligned_cols=111  Identities=14%  Similarity=-0.025  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHhhhhcCc--HHHHHHH--HHHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhc
Q 012159          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGV--LIWSLATALLPLL--------AGFMPGLVLSRVLVGIGE  217 (470)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~--~~~~~~~~~~~~~--------~~~~~~l~~~~~l~G~~~  217 (470)
                      ..-.+..++.++-.+|..+..+.. .-++|  ++++.+.  +++.-..+++...        -++-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            345667778888888887554431 11222  3333221  2222222222111        023356777789999999


Q ss_pred             cCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHh
Q 012159          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP  261 (470)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  261 (470)
                      |-.......+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998999999888888888888888876543

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.77  E-value=0.0022  Score=56.30  Aligned_cols=214  Identities=14%  Similarity=0.169  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHH---------hhhhcCcHHHH-HHHH
Q 012159          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWL---------AKIFGGRKVLQ-TGVL  187 (470)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l---------~dr~g~r~~~~-~~~~  187 (470)
                      ...++.+.+-+..+....++-.+.++.|.++.....++-+..+.-++..++.|..         .||+|||+..- ++.+
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~wh~~gt~  100 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSWHLIGTV  100 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeeeeecccE
Confidence            3455667777777777777777778889999888889888999999988888744         56899887443 2222


Q ss_pred             HHHHHHH-HHH--------Hhh---hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHH
Q 012159          188 IWSLATA-LLP--------LLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG  255 (470)
Q Consensus       188 ~~~~~~~-~~~--------~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  255 (470)
                      +.++..- ++.        ..+   .+..++.+..++.|++.+..--...+.                            
T Consensus       101 lVslSf~~ifg~a~iF~~~~~~s~vanlglyaialvVFgv~~A~~ke~tea~----------------------------  152 (412)
T KOG4830|consen  101 LVSLSFPMIFGFAKIFLCKSTTSEVANLGLYAIALVVFGVGWASVKESTEAL----------------------------  152 (412)
T ss_pred             EEEEechhhcCceeEEeeccHHHHHHHhHHHHHHhheeeeeeecccccHHHH----------------------------
Confidence            1111100 000        000   111222233333333332221111100                            


Q ss_pred             HhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcC
Q 012159          256 LLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS  335 (470)
Q Consensus       256 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (470)
                                  +||+-|....+++....+++...++++. .-. .+..                  .....+|..-+++
T Consensus       153 ------------~R~~~~~~v~lG~~~~~vF~~~TrEP~~-~~~-~~~s------------------~~~Rm~W~~WF~~  200 (412)
T KOG4830|consen  153 ------------IRLAGWLVVVLGITVAFVFYAFTREPTN-SFS-SDAS------------------ELVRMHWTSWFGH  200 (412)
T ss_pred             ------------HHHhhhheeeeceeEEEEEeecccCccc-ccC-cchh------------------hhhcccchhhhhh
Confidence                        1333333222222222222222222211 110 0000                  1113456677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Q 012159          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSI  391 (470)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~  391 (470)
                      -.++...+.+++.-.....-..+++.|..+...+.....+++-.+..+.++..+.+
T Consensus       201 v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v  256 (412)
T KOG4830|consen  201 VQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV  256 (412)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence            88888888888887777777888888888777777766666666666665555444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.76  E-value=0.22  Score=49.05  Aligned_cols=52  Identities=21%  Similarity=0.239  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhh
Q 012159          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (470)
Q Consensus       202 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (470)
                      .++..++..++.|++.+.......++.+ .+|++    .++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            4566777778889998888877777776 45533    4555666666666665544

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.63  E-value=0.18  Score=51.98  Aligned_cols=152  Identities=17%  Similarity=0.204  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHH-HHHhhhhhHHHhhhhc--CcHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWG-YALSQLPGGWLAKIFG--GRKVLQTGVLIW  189 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g--~r~~~~~~~~~~  189 (470)
                      ++....+++..+.......+..++|. +.++||.+...+..+.+...+. .++|.+++|++..|+.  .|....+.++..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            35566677777777777888888887 6678999999999988665555 4577789999999874  344444433333


Q ss_pred             HHHHHH---HHHhh----------------------h-------------------------------------------
Q 012159          190 SLATAL---LPLLA----------------------G-------------------------------------------  201 (470)
Q Consensus       190 ~~~~~~---~~~~~----------------------~-------------------------------------------  201 (470)
                      .+..+.   ..+..                      .                                           
T Consensus       472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~  551 (735)
T KOG3626|consen  472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS  551 (735)
T ss_pred             HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence            332222   10000                      0                                           


Q ss_pred             ---------------------------------HHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhh
Q 012159          202 ---------------------------------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL  248 (470)
Q Consensus       202 ---------------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  248 (470)
                                                       .+..+++..++.-+..+...+....++-+..++++|..++|+..+..
T Consensus       552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~i  631 (735)
T KOG3626|consen  552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLI  631 (735)
T ss_pred             CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHH
Confidence                                             00113333344444444445666777788889999999999966655


Q ss_pred             -hhHHHHHHhhHHhhhcc
Q 012159          249 -SFGSVAGLLLAPPIIEN  265 (470)
Q Consensus       249 -~~g~~~g~~~~~~l~~~  265 (470)
                       -+|.+-+|++.|+++|.
T Consensus       632 rllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  632 RLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHhcCCchHhhhhhHhh
Confidence             57999999999999984

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.46  E-value=0.098  Score=50.35  Aligned_cols=102  Identities=15%  Similarity=0.004  Sum_probs=73.0

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhH
Q 012159          147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG--VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAA  224 (470)
Q Consensus       147 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~  224 (470)
                      ...--|.+-++..+...++.+..|.+-.++.+-.-+.++  .++.+...+++ ...++.|..+++.++.+.......+.+
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm-~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM-SFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444568888899999999999999996666654444333  23333333344 466777888888888888888888888


Q ss_pred             HHHhhhccCccchhhHHHHHHhhhh
Q 012159          225 TDLIARSIPLEERSRAVSFVFGGLS  249 (470)
Q Consensus       225 ~~~i~~~~~~~~r~~~~~~~~~~~~  249 (470)
                      ..-++.....+.-|..+|+......
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNtf~Al  386 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINTFVAL  386 (412)
T ss_pred             HHHHHHhccccceeeeeeeHHHHHH
Confidence            8888888887777888877665443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.95  E-value=0.18  Score=45.96  Aligned_cols=138  Identities=17%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhh
Q 012159          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR  230 (470)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~  230 (470)
                      .|.+.-.-.+...+..+.+....||+.--.-..+..++.+.++++.+ ++++.++-+.+-.+..++.|.......++-+.
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVa-fs~s~~~sL~GV~~aSissGlGEiTFL~lss~  142 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVA-FSNSVPMSLLGVVFASISSGLGEITFLALSSR  142 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEE-eccchhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence            35555556666777777788888886543333334455556665553 56666777788888888877766655555443


Q ss_pred             ccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc--cCchHHHHHHHHHHHHHHHHHHhhccCCC
Q 012159          231 SIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--LGWESVFYIFGLLGIAWFSGFKILQEGET  294 (470)
Q Consensus       231 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (470)
                       ++    ....+-++.+.+.++.+|..--..+.+.  +.-+.+.++...+.++.....+++.+.++
T Consensus       143 -Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe  203 (409)
T KOG3880|consen  143 -YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE  203 (409)
T ss_pred             -CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence             33    2355667778888888888777777663  45677888877776655555555544433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.95  E-value=0.19  Score=36.49  Aligned_cols=54  Identities=17%  Similarity=0.303  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012159          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (470)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (470)
                      ..+-+.+...+|...++ .+++..+.+++.+...++..+|.+...++.++.+.++
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~   58 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR   58 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            34556677788888775 6999999999999999999999999999988755543

Note that many members are hypothetical proteins.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.20  E-value=0.016  Score=54.45  Aligned_cols=107  Identities=21%  Similarity=0.185  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHH--HHHHHHHHHHH-Hh---------hhHHHHHHHHHHHHHhhccC
Q 012159          153 LVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGV--LIWSLATALLP-LL---------AGFMPGLVLSRVLVGIGEGV  219 (470)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~--~~~~~~~~~~~-~~---------~~~~~~l~~~~~l~G~~~~~  219 (470)
                      ....++.++-.+|..+.++..-+. .+|++.+.+.  +++ +..++++ ..         -++-+..++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            356678888888888877643221 2444443321  121 1111221 11         12225667778899999999


Q ss_pred             chhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHH
Q 012159          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (470)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (470)
                      .......+..+..++++|..+-.+...+..+|-.+|..++-
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             --HHHH-----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999899988888888888888888776653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=93.61  E-value=0.65  Score=48.29  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=28.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhhccCC------ceehhhHHHHHHHHHHH
Q 012159          408 MGITNTVGAVPGIVGVALTGYLLDSTH------SWSMSLFAPSIFFYLTG  451 (470)
Q Consensus       408 ~g~~~~~~~~~~~ig~~~~g~l~~~~~------~~~~~~~~~~~~~~~~~  451 (470)
                      ..+++..+.+|+.+++.+.+++.+..+      .|...+.+.+++.+++.
T Consensus       126 F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~  175 (654)
T TIGR00926       126 FSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL  175 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence            667777888888888888888874431      34445555444444333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.22  E-value=1.6  Score=39.29  Aligned_cols=134  Identities=16%  Similarity=0.026  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHhhhhcCc--HHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHhhccCchh
Q 012159          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIWSLATALLPLLA------GFMPGLVLSRVLVGIGEGVSPS  222 (470)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~  222 (470)
                      -|.+++.++++.++|+-+..++..|-..|  ..+.+..++.++...+.....      .+...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48899999999999999998888765543  355555444444333321111      1122335556666778899999


Q ss_pred             hHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHH
Q 012159          223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (470)
Q Consensus       223 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  284 (470)
                      ....+-+++.|++.|...+.++..-.++-..++-..-..-....+-|..|-++.+...+..+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence            99999999999999999998877655554333321100000113466788887776655433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.85  E-value=0.86  Score=44.19  Aligned_cols=127  Identities=19%  Similarity=0.078  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhc
Q 012159          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS  231 (470)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~  231 (470)
                      .|-..++.+...+.+...-++.+|+|-|+.+..+...+.++..+.+...+. +.....+-..|+-.+.........++.+
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~-~~~~~~~~~~G~~~~~~~~~p~~l~~~y  413 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNT-YVVLSHRSTAGILSSPLLTVPYGALALY  413 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhH-HHHHHHHhhcceeecchhcccHHHHHHH
Confidence            356667888888999999999999997666666655555655555433333 5555666666654444444433333332


Q ss_pred             cCc-----------------------cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCc-hHHHHHHHHHH
Q 012159          232 IPL-----------------------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW-ESVFYIFGLLG  279 (470)
Q Consensus       232 ~~~-----------------------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~-~~~~~~~~~~~  279 (470)
                      ...                       ..+|...|+.+....+..++..+..|.+.+.+|- +.+-...+..+
T Consensus       414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s  485 (498)
T KOG0637|consen  414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVA  485 (498)
T ss_pred             HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHH
Confidence            211                       1236667778888888888888888888887763 33333333333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=91.89  E-value=1.9  Score=38.85  Aligned_cols=72  Identities=21%  Similarity=0.224  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhhhhHHHHHHHHHHHhh
Q 012159          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTGYLL  430 (470)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~g~~~~~~~~~~~ig~~~~g~l~  430 (470)
                      ..+.+..|-|. +++.+|++.++...+.....++..+| ++.|.+.|+++.+.       ...++.+...+|-.......
T Consensus        17 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-------~l~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   17 TTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-------VLLIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             cccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            34555555555 45689999999999999999998875 88899999999884       44455555555555554444


Q ss_pred             c
Q 012159          431 D  431 (470)
Q Consensus       431 ~  431 (470)
                      +
T Consensus        88 ~   88 (250)
T PF06813_consen   88 S   88 (250)
T ss_pred             h
Confidence            3

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.88  E-value=15  Score=36.70  Aligned_cols=77  Identities=21%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhhccCchhhHHHHhhhccC-ccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHH
Q 012159          206 LVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (470)
Q Consensus       206 l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~  282 (470)
                      +.+.-++.|+.........-..+.+.+| +++|...+|-++...++..++..++++.+.+.+||.....+.-++.++.
T Consensus       269 ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       269 LALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3344455677767777777777777774 3578999999999888888777777799999999998888877766553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=90.19  E-value=10  Score=37.66  Aligned_cols=67  Identities=10%  Similarity=-0.007  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCch
Q 012159          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       203 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  269 (470)
                      +..+++..++..+..-..+.+..+.-+++.+|.--|+.|.+.+...++|+---..+.-++++.+.++
T Consensus       405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            3455566677777777788888999999999999999999999999988765555555555554443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=89.77  E-value=0.71  Score=42.26  Aligned_cols=64  Identities=22%  Similarity=0.090  Sum_probs=53.6

Q ss_pred             hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhh
Q 012159          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (470)
Q Consensus       199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (470)
                      +.++++..++..+.-|+-.|..+....--+.+-.++++|..+++.....-++|..++.+++-.+
T Consensus       338 ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  338 FTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             hccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            4566677788888889988888888888888878889999999999999999988888776544

>PRK03612 spermidine synthase; Provisional

Probab=89.25  E-value=7.1  Score=39.59  Aligned_cols=28  Identities=14%  Similarity=0.064  Sum_probs=20.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhhc-cCCc
Q 012159          408 MGITNTVGAVPGIVGVALTGYLLD-STHS  435 (470)
Q Consensus       408 ~g~~~~~~~~~~~ig~~~~g~l~~-~~~~  435 (470)
                      .|.++....+|+++|.++.|++.- ..|.
T Consensus       147 ~g~ly~~ntlGa~~G~l~~~~vLlp~lG~  175 (521)
T PRK03612        147 VATVLAADYLGALVGGLAFPFLLLPRLGL  175 (521)
T ss_pred             hhhhHhHHhHHHHHHHHHHHHHHHHhcch
Confidence            677788888888888888887654 3443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.22  E-value=8.5  Score=34.64  Aligned_cols=93  Identities=14%  Similarity=0.175  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHH----HHHHHHHHHHHHHHhh-h---HHHHHHHHHHHHHhhccCchh
Q 012159          152 GLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQT----GVLIWSLATALLPLLA-G---FMPGLVLSRVLVGIGEGVSPS  222 (470)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~----~~~~~~~~~~~~~~~~-~---~~~~l~~~~~l~G~~~~~~~~  222 (470)
                      ....-++..+..+|....|.+... +.||+.+..    +.+++.+..++..... +   ....+++..++.|++.-+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            445556667777788888888774 455554432    2223333222211111 1   245677888888887766555


Q ss_pred             hHHHHhhhc--cCccchhhHHHHH
Q 012159          223 AATDLIARS--IPLEERSRAVSFV  244 (470)
Q Consensus       223 ~~~~~i~~~--~~~~~r~~~~~~~  244 (470)
                      +...+--|.  ..|++-|..+|+.
T Consensus       224 ViL~lPhEyK~~~pk~ig~~Fg~i  247 (267)
T PF07672_consen  224 VILNLPHEYKGYNPKKIGIQFGLI  247 (267)
T ss_pred             HHhcChhhhcCCCcceehhHHHHH
Confidence            544333332  2334445555443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=87.96  E-value=20  Score=32.32  Aligned_cols=21  Identities=10%  Similarity=-0.153  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 012159          346 FCGSWGHYTCLSWLPTYFSEE  366 (470)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~  366 (470)
                      .+.....++....=..|++++
T Consensus       188 Av~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  188 AVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             HHHHHHHHhcccchHHHHHhC
Confidence            333444455555555677765

The region concerned is approximately 280 residues long.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=87.90  E-value=1.1  Score=43.09  Aligned_cols=111  Identities=18%  Similarity=0.047  Sum_probs=69.1

Q ss_pred             chhhHHHHHH-HHHHHHHhhhhhHHHhhhhcCcHHHHHHHH-HHHHHHHHHHH------hhhHHHHHHHHHHHHHhhccC
Q 012159          148 SSVAGLVQSS-FFWGYALSQLPGGWLAKIFGGRKVLQTGVL-IWSLATALLPL------LAGFMPGLVLSRVLVGIGEGV  219 (470)
Q Consensus       148 ~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~~~~~~~~~~------~~~~~~~l~~~~~l~G~~~~~  219 (470)
                      ....-++..+ +.+.-.+|.+.+.++-++- ||...+...+ ...+-.+.++-      .-.+-+.++....+.|+..|-
T Consensus       281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  281 DWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            3334445555 7777788866666665543 3333332222 11222222111      112336778888999999999


Q ss_pred             chhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhH
Q 012159          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (470)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  259 (470)
                      .......+..+-.+++++..+-.+.......|...|..++
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            8889999999999888887777777777777777766554

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=84.84  E-value=26  Score=30.58  Aligned_cols=44  Identities=16%  Similarity=0.242  Sum_probs=24.9

Q ss_pred             cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHH
Q 012159          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (470)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  279 (470)
                      +++.+.-.......-++..+|..+++.+.+..+. +..++.+++.
T Consensus       158 ~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~l  201 (209)
T PF06912_consen  158 KDRALRRALRYLLIILSFFIGAILGALLYRRLGF-WALLLPALLL  201 (209)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence            3333344445555566667777777777777774 3444444433

The function of this family is unknown although a few members are thought to be membrane proteins.

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=84.74  E-value=59  Score=34.60  Aligned_cols=36  Identities=8%  Similarity=0.094  Sum_probs=20.6

Q ss_pred             HHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHH
Q 012159          244 VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (470)
Q Consensus       244 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  279 (470)
                      ...+..++.++..+++.++...++|..++++.++++
T Consensus       106 l~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILA  141 (810)
T TIGR00844       106 LVPVMTSGWLVIALFVWILVPGLNFPASLLMGACIT  141 (810)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhc
Confidence            333344555555555555545567777777766654

This model is specific for the fungal members of this family.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=83.38  E-value=53  Score=33.03  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhccCchhhHHHHhhhccCc-cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHH
Q 012159          206 LVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (470)
Q Consensus       206 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (470)
                      +.+.-+..|+.........-..+.+.+|. +++...+|-++...++-..+-.++++.+.+.+||+..-.+.-++.++..
T Consensus       285 Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  285 IALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            34444556777777777777777777753 5667888888888888777777889999999999988887666554443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=83.02  E-value=19  Score=34.00  Aligned_cols=131  Identities=17%  Similarity=0.091  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhh
Q 012159          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ--TGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (470)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~  229 (470)
                      |..-++..+..+++.+..|.+--++.|..-++  ++.+.-+...+++ ..+.+.|..+++.++...-.....+.+..-++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m-~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA  352 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM-AQTQHIWVCYAGYVLFRVIYQLTITIATFQIA  352 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh-hcccceehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence            56667777788888999999977776653333  3333333333333 34566788888888887777778888888888


Q ss_pred             hccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-----------chHHHHHHHHHHHHHHHHH
Q 012159          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-----------WESVFYIFGLLGIAWFSGF  286 (470)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----------~~~~~~~~~~~~~~~~~~~  286 (470)
                      .....+.-|..+|+.....-+   +-.++.-.+.+..|           +..-|.+.+++.++.....
T Consensus       353 ~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~  417 (433)
T KOG3810|consen  353 RNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE  417 (433)
T ss_pred             HhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence            888888888888887664433   33333333344222           2344666676666654443

>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.58  E-value=17  Score=35.29  Aligned_cols=48  Identities=13%  Similarity=0.063  Sum_probs=31.1

Q ss_pred             hhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcH
Q 012159          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK  180 (470)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~  180 (470)
                      +.+......+.+.+|++....|+.  +.+.|..+--++...+.-|-|.--
T Consensus       441 YLMVWwa~~iGeT~gIp~eIMGLT--iLAAGTSIPDlitSvIVARKGlGD  488 (588)
T KOG1307|consen  441 YLMVWWANIIGETLGIPDEIMGLT--ILAAGTSIPDLITSVIVARKGLGD  488 (588)
T ss_pred             HHHHHHHHHcccccCCCHHHhhhh--hhhcCCchHHhhHhhhhccccccc
Confidence            334444556778889988887764  344555566677777777766543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=81.36  E-value=50  Score=31.31  Aligned_cols=140  Identities=18%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHH----HHHH---HHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Q 012159          144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ----TGVL---IWSLATALLPLL-AGFMPGLVLSRVLVGI  215 (470)
Q Consensus       144 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~----~~~~---~~~~~~~~~~~~-~~~~~~l~~~~~l~G~  215 (470)
                      .|-+..|.+++.+.+.....+|+...-++.|.--.-+.+.    ++++   ...+..+.++.. .++-+.++++.++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3667788999999999999999888887776432221111    1111   111111122111 2345678888899999


Q ss_pred             hccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh-cccCchHHHHHHHHHHHHHHHH
Q 012159          216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLGWESVFYIFGLLGIAWFSG  285 (470)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g~~~~~~~~~~~~~~~~~~  285 (470)
                      -.|.-.|..+.++.+...  +..-..+.....-.+|...+.++-.++. ...|.--.-...+++.++..+.
T Consensus       118 LVG~EiPL~mrml~~r~a--~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv  186 (508)
T COG4262         118 LVGAEIPLLMRMLQRRQA--KAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVV  186 (508)
T ss_pred             HHhcchHHHHHHHHHHHH--HHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence            999999999988887321  1111122222225566666665555443 3455433334445554444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	470
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-49
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-10
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-09
2cfq_A	417	Lactose permease; transport, transport mechanism,	3e-05
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	4e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  174 bits (443), Expect = 2e-49
 Identities = 50/353 (14%), Positives = 113/353 (32%), Gaps = 15/353 (4%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 172 LAKIFGGRKVLQTGVLIWSLATALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +     +  +      +  + +   L G  +G+        +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAW-FSGF 286
                 +ER   VS      + G     LL    +     W +  Y+     I      F
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
            ++++   S G                  + +E+  + K +  + +  +K +W +  A+ 
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL--TAKQIFMQYVLPNKLLWYIAIANV 262

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
                 Y  L W PTY  E     L +++W   L   A +  T +    +D +       
Sbjct: 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--- 319

Query: 407 TMGITNTVGAVPGIVGVALTGYLLDSTHSWSM--SLFAPSIFFYLTGTIVWLA 457
                  V  +  +    +  ++  + +       +       Y    ++ L 
Sbjct: 320 --RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 48/301 (15%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           M+            V  ++   Y +SQL  G ++   G R V+  G+ I+ LAT +  + 
Sbjct: 26  MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA-VT 84

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-----PLEERSRAVSFVFGGLSFGSVA 254
              +  L+ +  + G+G     +    ++AR++        +   A S +  G+      
Sbjct: 85  TSSLTVLIAASAMQGMG-----TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-- 137

Query: 255 GLLLAPPI----IENLGWESVFYIFGLLGIA-WFSGFKILQEGETSNGATLAPRSNYINM 309
             LLAP I         W + +    +L     FS  + + E       T    +    +
Sbjct: 138 --LLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE-------TRPVDAPRTRL 188

Query: 310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL 369
             S                +K +F +      +     G  G     +         L L
Sbjct: 189 LTS----------------YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL 232

Query: 370 NLTEAAWVSILPPLASVLVTSIAAQFADNL-----IATGVETTMGITNTVGAVPGIVGVA 424
           +    + + ILP  A+      A +           +       G+   +    G++ V 
Sbjct: 233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVW 292

Query: 425 L 425
            
Sbjct: 293 T 293

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 52/326 (15%), Positives = 103/326 (31%), Gaps = 13/326 (3%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
             + +      F   +  AGL+QS+F++GY +  +P G L K    +  + TG+ +++L 
Sbjct: 45  NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104

Query: 193 TALLPLLAGFM---PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS 249
            A L   A  +      ++   ++  G G   +AA   +    P       ++      S
Sbjct: 105 -AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163

Query: 250 FGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSN--------GATLA 301
           FG++  ++    +I +        +   +     S +K                    +A
Sbjct: 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223

Query: 302 PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT 361
                       S +  +  +         + R +     + A FC       C S+L  
Sbjct: 224 LLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283

Query: 362 YFSEEL-SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGI 420
           Y  EE+  +    AA       +   +                V     +      +   
Sbjct: 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA 343

Query: 421 VGVALTGYLLDSTHSWSMSLFAPSIF 446
                 G +  +  S  MS+  P+IF
Sbjct: 344 FAGGHVGLIALTLCSAFMSIQYPTIF 369

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 2/113 (1%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
             +    GG+  L     I S+              +V+ + L               I 
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-LEVVILKTLHMFEVPFLLVGCFKYIT 338

Query: 230 RSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
               +   +      F        +   +LA  + E++G++  + + GL+ + 
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF 202
                + A  + + +     LS   GG++A +I G R  +  G ++  L   +L L  G 
Sbjct: 49  LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG- 107

Query: 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLAP 260
              L  S +L+ IG G      + L+       +R R    S    G++ G+    L+  
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167

Query: 261 PIIENLGWESVFYIFGLLGIAWFSGFKILQ 290
              E  G+   F +  +        +    
Sbjct: 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.93
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.63
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.31
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.26
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.16
2xut_A	524	Proton/peptide symporter family protein; transport	98.77

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.6e-32  Score=270.50  Aligned_cols=315  Identities=15%  Similarity=0.182  Sum_probs=261.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      ++..+..+++.+++..+......+.+|.+.+++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            45666677777888888888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH--HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh-cccC-
Q 012159          192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG-  267 (470)
Q Consensus       192 ~~~~~~--~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g-  267 (470)
                      +.+++.  ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|++++.+. +..+ 
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  183 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH  183 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            887762  245677999999999999999999999999999999999999999999999999999999999998 5555 


Q ss_pred             ------------------------chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhcc
Q 012159          268 ------------------------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES  323 (470)
Q Consensus       268 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (470)
                                              ||+.|++.+++.++..+..++.+.++.+++.+.+++++                  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------------  245 (438)
T 3o7q_A          184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------------------  245 (438)
T ss_dssp             CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------------------
T ss_pred             ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------------------
Confidence                                    99999888877766655555443332221111110000                  


Q ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY-FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (470)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (470)
                      ....++++++++|.++...+..++..........++|.| +++.+|+++.+++.+.....++.++++++.|++.||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  325 (438)
T 3o7q_A          246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_dssp             SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            001235788899999999999999999899999999999 8888899999999999999999999999999999999999


Q ss_pred             CCcch-----------------------------------------------------HHHHHHhhhhHHHHHHHHHHHh
Q 012159          403 GVETT-----------------------------------------------------MGITNTVGAVPGIVGVALTGYL  429 (470)
Q Consensus       403 ~~~~~-----------------------------------------------------~g~~~~~~~~~~~ig~~~~g~l  429 (470)
                      +....                                                     .+... .+.++..++|.+.|++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l  404 (438)
T 3o7q_A          326 KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFV  404 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHH
Confidence            86654                                                     44433 6789999999999999


Q ss_pred             hccCCceehhhHHHHH
Q 012159          430 LDSTHSWSMSLFAPSI  445 (470)
Q Consensus       430 ~~~~~~~~~~~~~~~~  445 (470)
                      .+..+++...+++.++
T Consensus       405 ~~~~g~~~~~~~~~~~  420 (438)
T 3o7q_A          405 SDAAGNIPTAELIPAL  420 (438)
T ss_dssp             HHHHTSSGGGGHHHHH
T ss_pred             HHHhcchHHHHHHHHH
Confidence            9987756666665443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=7.7e-33  Score=273.75  Aligned_cols=341  Identities=16%  Similarity=0.205  Sum_probs=271.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +++.+..+++..+...+....+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            466777888888888899999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-
Q 012159          192 ATALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-  267 (470)
Q Consensus       192 ~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  267 (470)
                      +.+++++.   .++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|++++++.+..| 
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  184 (451)
T 1pw4_A          105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  184 (451)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            98887541   56678999999999999999999999999999999999999999999999999999999999888898 


Q ss_pred             chHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHH
Q 012159          268 WESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (470)
                      ||+.|++.+++.++..++. +.++++++.......++.+.. .... .....+.+...+....++.+++|.++...+..+
T Consensus       185 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (451)
T 1pw4_A          185 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-YPDD-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV  262 (451)
T ss_dssp             STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc-cccc-chhhhhcccccccchHHHHHcCHHHHHHHHHHH
Confidence            9999999998876655444 445544333221111110000 0000 000000011111111467889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCcch-----------------
Q 012159          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATGVETT-----------------  407 (470)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~-----------------  407 (470)
                      +..........++|.|+++.+|+++.+.+++.+...++.+++.++.|++.||+  ++|+....                 
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (451)
T 1pw4_A          263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP  342 (451)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999987899999999999999999999999999999999  87765443                 


Q ss_pred             -----------------------------------------HHHHHHhhhh-HHHHHHHHHHHhhccCCceehhhHHHHH
Q 012159          408 -----------------------------------------MGITNTVGAV-PGIVGVALTGYLLDSTHSWSMSLFAPSI  445 (470)
Q Consensus       408 -----------------------------------------~g~~~~~~~~-~~~ig~~~~g~l~~~~~~~~~~~~~~~~  445 (470)
                                                               .|+.+....+ +..++|.+.|++.+..+ +...+++.++
T Consensus       343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~  421 (451)
T 1pw4_A          343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIG  421 (451)
T ss_dssp             TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence                                                     8888889999 99999999999999866 5555555554


Q ss_pred             HHHHHHHHHHh
Q 012159          446 FFYLTGTIVWL  456 (470)
Q Consensus       446 ~~~~~~~~~~~  456 (470)
                      +.++.....+.
T Consensus       422 ~~~~~~~~~~~  432 (451)
T 1pw4_A          422 GSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=2.1e-29  Score=243.07  Aligned_cols=261  Identities=17%  Similarity=0.172  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (470)
                      ..+++..++..+....+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45666777888888889999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHH
Q 012159          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (470)
Q Consensus       197 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  276 (470)
                      . ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.++.|||+.|++.+
T Consensus        83 ~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  161 (375)
T 2gfp_A           83 V-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL  161 (375)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             H-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence            5 556778999999999999999999999999999999999999999999999999999999999999889999999988


Q ss_pred             HHHHHHHH-HHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 012159          277 LLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (470)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (470)
                      ++.++..+ ..+.++|+++.++++                       +....++++.+++|.++...+..++........
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            87766655 333344332221110                       001234567889999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012159          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (470)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (470)
                      ..+.|.|+++.+|+++.+.+.+.....++.+++.++.+++.||+++
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998889999999999999999999999999999999987

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=7.4e-27  Score=233.49  Aligned_cols=341  Identities=15%  Similarity=0.076  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHHh-hhhh-----cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHH
Q 012159          117 GTTSLAFVICNMDKVNLSVAIIP-MSHR-----FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW  189 (470)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  189 (470)
                      +.+++..++...........++. +.++     +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~   95 (491)
T 4aps_A           16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI   95 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            34444444555544444444443 5555     99999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccc--hhhHHHHHHhhhhhHHHHHHhhHHhhhcccC
Q 012159          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (470)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (470)
                      +++.++++ ..++++.+++.|++.|++.+...+...+++.|++|+++  |+.++++++.+.++|..++|++++.+.++.|
T Consensus        96 ~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A           96 MLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99887775 56667899999999999999999999999999999988  7788888999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccCCCCCC-CCCCCccchhhhhhhhhh---------------------hHH-------
Q 012159          268 WESVFYIFGLLGIAWFSGFKILQEGETSNG-ATLAPRSNYINMKKSLSA---------------------SLE-------  318 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~~-------  318 (470)
                      ||+.|++.++..++..+..+...++...+. ....+..+.....+..+.                     ..+       
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (491)
T 4aps_A          175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLT  254 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhh
Confidence            999999988777666555544432221111 111111010000000000                     000       


Q ss_pred             -----------hhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 012159          319 -----------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVL  387 (470)
Q Consensus       319 -----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~  387 (470)
                                 ....+.+........+....+...+..++..........++|.|+++..+.+....+.+.....++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (491)
T 4aps_A          255 IVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIML  334 (491)
T ss_dssp             HHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHH
Confidence                       000000000001111223345555566666666677778889999987888877888888999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcc-----h-------------------------------------------------------
Q 012159          388 VTSIAAQFADNLIATGVET-----T-------------------------------------------------------  407 (470)
Q Consensus       388 ~~~~~g~l~dr~~~~~~~~-----~-------------------------------------------------------  407 (470)
                      +..+.+++.||+++|+...     .                                                       
T Consensus       335 ~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  414 (491)
T 4aps_A          335 YTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL  414 (491)
T ss_dssp             HHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            9999999999999886543     1                                                       


Q ss_pred             ---------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhhccC
Q 012159          408 ---------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAS  460 (470)
Q Consensus       408 ---------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (470)
                               .|+.+....++..+++.+.+++.+..  +...+...+++.++.+...+....+
T Consensus       415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     78888999999999999998887653  3334555555555555555544443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=3.6e-26  Score=228.48  Aligned_cols=293  Identities=17%  Similarity=0.213  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCC--------CchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW--------NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~  185 (470)
                      .+....+++.++.+++...++..+|.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||++++++
T Consensus        12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~   91 (491)
T 4gc0_A           12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA   91 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            333444566777788888888888888777643        345678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhh
Q 012159          186 VLIWSLATALLPL-----------------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL  248 (470)
Q Consensus       186 ~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  248 (470)
                      .+++.++.++.++                 .+++++.++++|+++|++.|...+....+++|+.|+++|++..++.+.+.
T Consensus        92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~  171 (491)
T 4gc0_A           92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI  171 (491)
T ss_dssp             HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh
Confidence            9999999887753                 46778999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhHHhhhcc--------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhh-----h
Q 012159          249 SFGSVAGLLLAPPIIEN--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLS-----A  315 (470)
Q Consensus       249 ~~g~~~g~~~~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  315 (470)
                      .+|..+++.++..+...        .+||+.+.+..+..++..+..+..||+++....+.+.++......+...     +
T Consensus       172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~  251 (491)
T 4gc0_A          172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ  251 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence            99999999888776543        2477777777777777777777777776543222222221111111000     0


Q ss_pred             h----HHhhhccCCCCCHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Q 012159          316 S----LEEMGESLKDVPWKAIFRSKAVWAMIYAHF-CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS  390 (470)
Q Consensus       316 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~  390 (470)
                      .    .+...+..+.......++.+.........+ ........+..+.|.+.+ ..+.+...........++..+++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  330 (491)
T 4gc0_A          252 AVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTV  330 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHH
Confidence            0    000011111112233344444444333333 333344555556666555 5688888888888888999999999


Q ss_pred             HHHHHHHHHHhcCCcch
Q 012159          391 IAAQFADNLIATGVETT  407 (470)
Q Consensus       391 ~~g~l~dr~~~~~~~~~  407 (470)
                      +.+++.||+|||+....
T Consensus       331 ~~~~l~dr~Grr~~~~~  347 (491)
T 4gc0_A          331 LAIMTVDKFGRKPLQII  347 (491)
T ss_dssp             HHHHHHHHHCSHHHHHH
T ss_pred             HHHHHHHhhcCcchhcc
Confidence            99999999999986554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.93  E-value=1.8e-25  Score=218.49  Aligned_cols=329  Identities=11%  Similarity=0.022  Sum_probs=212.0

Q ss_pred             HHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (470)
                      +....++.........+++|. +.+++|++..+.|++.+++.++..++++++|+++||+|||++++++..+++++.....
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~   91 (417)
T 2cfq_A           12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            333344444445555666666 5567899999999999999999999999999999999999999988776654321110


Q ss_pred             --HhhhHH-HHHHHHHHHHHhhccCchhhHHHHhhhccCc--cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHH
Q 012159          198 --LLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (470)
Q Consensus       198 --~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  272 (470)
                        ...... ..++..+++.|++.+...+.....+.++.++  ++++..++....+..+|..++|.+++++.+ .+|++.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f  170 (417)
T 2cfq_A           92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF  170 (417)
T ss_dssp             HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence              111111 1233455555555554444444444444432  456778888989999999999999999987 5899999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHH
Q 012159          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (470)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (470)
                      ++.+++.++..+..+..++++++..+..+++++              ..++.....+++.+++|.++...+..++....+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (417)
T 2cfq_A          171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY  236 (417)
T ss_dssp             TTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS--------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccccccccccccccc--------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence            887766544444444333332111100000000              000001112456788999988777666655565


Q ss_pred             HHHHHHHHHHHHHHhCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------
Q 012159          353 YTCLSWLPTYFSEELSL---NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT----------------------  407 (470)
Q Consensus       353 ~~~~~~~~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------------  407 (470)
                      .....++|.|+.+.++.   +....+++..+..++.+++.++.++++||+++|+.+..                      
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  316 (417)
T 2cfq_A          237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV  316 (417)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            66667789888765542   23445777778888889999999999999999876543                      


Q ss_pred             ---------------------------------HHH-HHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHH
Q 012159          408 ---------------------------------MGI-TNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTI  453 (470)
Q Consensus       408 ---------------------------------~g~-~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  453 (470)
                                                       .+. .+....++++++|.+.|++.+..+ +...+.+.+++.++....
T Consensus       317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~  395 (417)
T 2cfq_A          317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence                                             334 355666889999999999988655 445555555544444444


Q ss_pred             HHhhccCCCC
Q 012159          454 VWLAFASSKP  463 (470)
Q Consensus       454 ~~~~~~~~~~  463 (470)
                      .+...++.++
T Consensus       396 ~~~~~~~~~~  405 (417)
T 2cfq_A          396 SVFTLSGPGP  405 (417)
T ss_dssp             HTTSSCCSCT
T ss_pred             HHhhhcCCCc
Confidence            4444444333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=4.8e-22  Score=200.23  Aligned_cols=171  Identities=21%  Similarity=0.270  Sum_probs=143.3

Q ss_pred             HHHHHHHHHhhhhhHHHhHHh-hhhhcC------CCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHHHHHH
Q 012159          119 TSLAFVICNMDKVNLSVAIIP-MSHRFG------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS  190 (470)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~  190 (470)
                      +++..++..+........++. +.+++|      ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            344444444444445555544 677889      9999999999999999999999999999999 99999999999988


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHH---HHhhhhhHHHHHHhhHHhhhcccC
Q 012159          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF---VFGGLSFGSVAGLLLAPPIIENLG  267 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~g  267 (470)
                      ++.+++++...+++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   ++.+.++|.+++|.+++++.+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (524)
T 2xut_A           97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG  176 (524)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88877754332678899999999999999999999999999999999876666   899999999999999999999899


Q ss_pred             chHHHHHHHHHHHHHHHHHHhh
Q 012159          268 WESVFYIFGLLGIAWFSGFKIL  289 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~  289 (470)
                      |++.|++.+++.++..+..+..
T Consensus       177 ~~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          177 AAVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888876665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.63  E-value=2e-15  Score=148.69  Aligned_cols=175  Identities=13%  Similarity=0.040  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh--cCcHHHHHHHHHHH-H
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLIWS-L  191 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~  191 (470)
                      ++.+++..++.......+....|.+.++ +|.+..+.+++.++..++..++.++.|++.||+  |+|+.+.++.++.. +
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  333 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            3344445555555566666777776655 899999999999999999999999999999999  99999888877666 4


Q ss_pred             HHHHHHHhh-hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhh-HHHHHHhhHHhhhcccCch
Q 012159          192 ATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       192 ~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~  269 (470)
                      +.+++.... .+.+.+++..++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.|++.++.||+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  413 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  413 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            444443222 25567778888899998888888899999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 012159          270 SVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      ..|++.+++.++..+..+.+.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          414 GGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998888777766655554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.50  E-value=1.4e-13  Score=134.09  Aligned_cols=143  Identities=13%  Similarity=0.061  Sum_probs=116.6

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHH
Q 012159          147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATD  226 (470)
Q Consensus       147 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  226 (470)
                      +....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.+ ..++.+.+++..++.+++.+...+....
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345668888888888899999999999999999999988888777665554 3344466667777778777666777788


Q ss_pred             HhhhccCccchhhHHHH-HHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhc
Q 012159          227 LIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       227 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      ++.|.+|++.|+++.++ ++....+|..++|.++|++.+..|++..|++.+++.++..+..+...
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  400 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999 58888999999999999999988999999988888777665554433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=3.1e-13  Score=132.40  Aligned_cols=161  Identities=16%  Similarity=0.096  Sum_probs=126.2

Q ss_pred             HHHHHHHhhhhhHHHhHHhh-hhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159          121 LAFVICNMDKVNLSVAIIPM-SHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (470)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~-~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (470)
                      +..++............|.+ .++ +|.+..+.+++.++..++..++.++.|+++||+|||+++.++.++.+++.++.. 
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-  343 (438)
T 3o7q_A          265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-  343 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-
Confidence            33344444444555555555 544 599999999999999999999999999999999999999999888877776664 


Q ss_pred             hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHHHH
Q 012159          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGL  277 (470)
Q Consensus       199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~  277 (470)
                      ..++.+. ++..++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|++.+..| ++..|++.++
T Consensus       344 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  420 (438)
T 3o7q_A          344 FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_dssp             HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred             HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3444343 34448889999999999999999999855 888888877 567999999999999999999 9999988766


Q ss_pred             HHHHHHHH
Q 012159          278 LGIAWFSG  285 (470)
Q Consensus       278 ~~~~~~~~  285 (470)
                      +.++..+.
T Consensus       421 ~~~~~~~~  428 (438)
T 3o7q_A          421 CFAVIFIF  428 (438)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.31  E-value=6.3e-12  Score=125.07  Aligned_cols=160  Identities=19%  Similarity=0.085  Sum_probs=121.2

Q ss_pred             hhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHH-----HHHHHHHHHHHHHHHhh----
Q 012159          131 VNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-----TGVLIWSLATALLPLLA----  200 (470)
Q Consensus       131 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~~----  200 (470)
                      ......++. ..+.++.+..+.+++.+...++..++.++.|++.||+|||+...     ++.++.+++.+++....    
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG  379 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444454 34446777677888889999999999999999999999986554     56666666554443321    


Q ss_pred             ----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHH
Q 012159          201 ----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (470)
Q Consensus       201 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  276 (470)
                          .+.+.+++..++.|++.+...+....++.+.+|++.|++++|+.+....+|..++|.+.+.+.+. ++.+.|++.+
T Consensus       380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~  458 (491)
T 4aps_A          380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFG  458 (491)
T ss_dssp             CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence                14466777888999999998999999999999999999999999999999999999999988764 6778888888


Q ss_pred             HHHHHHHHHHHhhcc
Q 012159          277 LLGIAWFSGFKILQE  291 (470)
Q Consensus       277 ~~~~~~~~~~~~~~~  291 (470)
                      ++.++..+..+.+.+
T Consensus       459 ~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          459 LGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877666655555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.26  E-value=2.3e-10  Score=113.75  Aligned_cols=181  Identities=12%  Similarity=-0.004  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (470)
                      +.........+........+..+.+.+.+..+.+............+...++.++++++.||+|||+.++.+....+++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            33444444444555555666667788888888888888888888889999999999999999999999998888777766


Q ss_pred             HHHHHhh----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-----
Q 012159          194 ALLPLLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-----  264 (470)
Q Consensus       194 ~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  264 (470)
                      +.++...    .....++...+..+.......+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+     
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~  436 (491)
T 4gc0_A          357 FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV  436 (491)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5553221    1111222222222222234457778999999999999999999999999999999888766543     


Q ss_pred             -ccCchHHHHHHHHHHHHHHHHH-HhhccCCC
Q 012159          265 -NLGWESVFYIFGLLGIAWFSGF-KILQEGET  294 (470)
Q Consensus       265 -~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~  294 (470)
                       ..++.+.|++.++++++..+.. +++||++.
T Consensus       437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence             3466778888888877665544 55666543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.16  E-value=3.1e-11  Score=115.57  Aligned_cols=158  Identities=13%  Similarity=-0.050  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHH-HHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSLAT  193 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~  193 (470)
                      +....+..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.+++.||++++.  ..+..+ ..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~  278 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGL  278 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3444445555555556666677775544 8999999999999999999999999999999998832  222222 22222


Q ss_pred             H--HHHH-hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159          194 A--LLPL-LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (470)
Q Consensus       194 ~--~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  270 (470)
                      .  .... ..++.+.+++..++.|++.+...+...+++.|.+| ++|++++|+.+....+|..++|.+.+.+.+..+++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  357 (375)
T 2gfp_A          279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL  357 (375)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred             HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence            1  1111 12355667778888999999999999999999998 899999999999999999999999999988777877


Q ss_pred             HHHHHH
Q 012159          271 VFYIFG  276 (470)
Q Consensus       271 ~~~~~~  276 (470)
                      .+++.+
T Consensus       358 ~~~~~~  363 (375)
T 2gfp_A          358 GLLMTL  363 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.77  E-value=1.1e-08  Score=102.35  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHh----hhhcC----cHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHH
Q 012159          150 VAGLVQSSFFWGYALSQLPGGWLA----KIFGG----RKVLQTGVLIWSLATALLPLLA--------GFMPGLVLSRVLV  213 (470)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~l~  213 (470)
                      ..+++.....++..+..++.+++.    +|.|+    ++.+.++.++.+++.++++...        .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666666777777777764    55543    3456667777666665554321        2445677788999


Q ss_pred             HhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc--Cc---------hHHHHHHHHHHHHH
Q 012159          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GW---------ESVFYIFGLLGIAW  282 (470)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~---------~~~~~~~~~~~~~~  282 (470)
                      |++.+...+...+++.+..|+++|++++|+.+....+|..+||.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988742  13         33366666666655


Q ss_pred             HHHHHhh
Q 012159          283 FSGFKIL  289 (470)
Q Consensus       283 ~~~~~~~  289 (470)
                      .++.+++
T Consensus       496 ~~~~~~~  502 (524)
T 2xut_A          496 AIVFALY  502 (524)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            5554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-23
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-05
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (248), Expect = 2e-23
 Identities = 53/357 (14%), Positives = 106/357 (29%), Gaps = 7/357 (1%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 172 LAKIFGGRKVLQTGVLIWSLATA---LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +        +P     +  + +   L G  +G+        +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
                 +ER   VS      + G     LL    +                    + F  
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 289 LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348
               +T     L P   Y N          E   + K +  + +  +K +W +  A+   
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408
               Y  L W PTY  E     L +++W   L   A +  T +    +D +       T 
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321

Query: 409 GITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQN 465
                   +  I  +        +     + +       Y    ++ L      P+ 
Sbjct: 322 VF---FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 5/200 (2%)

Query: 87  ESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW 146
                    E    +     + +     L         +  +    L  +   +     +
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF 282

Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG- 205
               +      + +      L  GW++          TGV   +L T    +      G 
Sbjct: 283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 342

Query: 206 ---LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPP 261
               ++  +++G                  P +    A  F    G   GSVA   +   
Sbjct: 343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402

Query: 262 IIENLGWESVFYIFGLLGIA 281
            ++  GW+  F +     I 
Sbjct: 403 TVDFFGWDGGFMVMIGGSIL 422

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 34/317 (10%), Positives = 73/317 (23%), Gaps = 5/317 (1%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
                I +      + S  G++ ++      L Q   G L+   G RK L   +    + 
Sbjct: 27  FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86

Query: 193 TALLPLLAGFMPGLVLSRVLV-----GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG 247
            A   +            V        +G   +  A              +         
Sbjct: 87  FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146

Query: 248 LSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
              G   G  +   +         +   G   I     F    +  +S     A  +N+ 
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS 206

Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL 367
                L+  L    +      +                   +    T       +     
Sbjct: 207 AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTT 266

Query: 368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMGITNTVGAVPGIVGVALTG 427
              L  A+ +   P + + +    A   A  +++  +  +   T+ +  V          
Sbjct: 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV 326

Query: 428 YLLDSTHSWSMSLFAPS 444
             L       ++     
Sbjct: 327 PFLLVGCFKYITSQFEV 343

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 2/195 (1%)

Query: 90  QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
            V                  P+ + L           ++     +             + 
Sbjct: 200 AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTR 259

Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209
           V G V +      A        +    GG+  L     I S+           +  ++L 
Sbjct: 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL- 318

Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGW 268
           + L               I     +   +      F        +   +LA  + E++G+
Sbjct: 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378

Query: 269 ESVFYIFGLLGIAWF 283
           +  + + GL+ + + 
Sbjct: 379 QGAYLVLGLVALGFT 393

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.53

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-33  Score=274.28  Aligned_cols=331  Identities=15%  Similarity=0.175  Sum_probs=258.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (470)
                      +|.++..++++++..+++...++...|.+. ++|++..++|++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            567777777888888888888888888776 5899999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhh---hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcc-cC
Q 012159          192 ATALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LG  267 (470)
Q Consensus       192 ~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g  267 (470)
                      +.++++...   ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+... .+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  181 (447)
T d1pw4a_         102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  181 (447)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence            887775432   45678999999999999999999999999999999999999999999999999999999887765 47


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHH
Q 012159          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (470)
                      ||+.|++.+++.++..+..+.+.+++++.......++.... .........+.+...+....+..++++.+|...+..++
T Consensus       182 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (447)
T d1pw4a_         182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF  260 (447)
T ss_dssp             STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh-cccchhhccccccchhhHHHHHHHcCchHHHHHHHhhh
Confidence            99999998888777666655555444433222111111000 00001111111122222335678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch--------------------
Q 012159          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT--------------------  407 (470)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~--------------------  407 (470)
                      .....+....+.|.|+++.++++..+.+.......++.+++.++.|++.||++++.....                    
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (447)
T d1pw4a_         261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA  340 (447)
T ss_dssp             HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             hhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhccc
Confidence            999999999999999999899999999999999999999999999999999987764332                    


Q ss_pred             ----------------------------------------HHHHHHhhhh-HHHHHHHHHHHhhccCCceehhhHHHHH
Q 012159          408 ----------------------------------------MGITNTVGAV-PGIVGVALTGYLLDSTHSWSMSLFAPSI  445 (470)
Q Consensus       408 ----------------------------------------~g~~~~~~~~-~~~ig~~~~g~l~~~~~~~~~~~~~~~~  445 (470)
                                                              .|+.+..+.+ +.+++|.+.|++.|..+... .+++..+
T Consensus       341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~-~~~~~~~  418 (447)
T d1pw4a_         341 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG-GFMVMIG  418 (447)
T ss_dssp             TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHHH
Confidence                                                    6667777776 45678999999999877433 3333333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7e-22  Score=189.22  Aligned_cols=334  Identities=12%  Similarity=-0.003  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHH
Q 012159          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (470)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (470)
                      +.++.+.+.+++..+......+++|. +.+++|++..++|++.+++.++..++++++|+++||+|||++++++..+..++
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            44455566666777777777888876 66779999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHhhhH---HHHHHHHHHHHHhhccCchhhHHHHhhhccCc--cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC
Q 012159          193 TALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (470)
Q Consensus       193 ~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (470)
                      ..+.......   ....++.+++.+.+.+...........+..++  +++.+..+........+..++|.+++.+.+. +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~  165 (417)
T d1pv7a_          87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N  165 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-c
Confidence            7666433222   12234555555555555554444444444332  3455677788888899999999999998865 5


Q ss_pred             chHHHHHHHHHHHHH-HHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHH
Q 012159          268 WESVFYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (470)
                      |+..+........+. .+..+..++++........+++.               .+........+.++++..+...+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (417)
T d1pv7a_         166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN---------------HSAFSLKLALELFRQPKLWFLSLYVI  230 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC---------------CCCCCHHHHHHHTTSSHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh---------------cccccccccccccccccccchhhhhH
Confidence            555555555554444 44444443333222211110000               00001111233444455544444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch----------------
Q 012159          347 CGSWGHYTCLSWLPTYFSEE---LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT----------------  407 (470)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~----------------  407 (470)
                      .............+.+....   .+.+....+.......++..++..+.+++.||.++++....                
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  310 (417)
T d1pv7a_         231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc
Confidence            44444444444444433321   22344556677788888999999999999999999877665                


Q ss_pred             ---------------------------------------HHHH-HHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHH
Q 012159          408 ---------------------------------------MGIT-NTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF  447 (470)
Q Consensus       408 ---------------------------------------~g~~-~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  447 (470)
                                                             .+.. +....++..++|.+.|++.|..+ +...+++.+++.
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~  389 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVA  389 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
Confidence                                                   4543 34456889999999999999876 444555555555


Q ss_pred             HHHHHHHHhhccCCCCC
Q 012159          448 YLTGTIVWLAFASSKPQ  464 (470)
Q Consensus       448 ~~~~~~~~~~~~~~~~~  464 (470)
                      ++.....+...++..|.
T Consensus       390 ~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         390 LGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHhhcCCCcc
Confidence            55555555555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.2e-15  Score=143.32  Aligned_cols=155  Identities=13%  Similarity=0.049  Sum_probs=131.8

Q ss_pred             HHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 012159          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (470)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  216 (470)
                      .....++.+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++.. ..++.+.+++..++.|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~  325 (417)
T d1pv7a_         247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFE  325 (417)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc-cccccchhhHHHHHHHHH
Confidence            3334455566777888899999999999999999999999999999999998888877774 455568888889999999


Q ss_pred             ccCchhhHHHHhhhccCccchhhHHHHH-HhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhccC
Q 012159          217 EGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG  292 (470)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  292 (470)
                      .+...+...+++.+.+|++.|++++++. +....+|..++|.++|++.+++|++++|++.+++.++..++.++..++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999985 566779999999999999999999999999998887766655555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=5.7e-14  Score=135.41  Aligned_cols=175  Identities=14%  Similarity=0.042  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHH
Q 012159          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (470)
                      ++.+....++............|. +.+.++.+..+.++..++..++..++.++.|++.||++|++..........+...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  330 (447)
T d1pw4a_         251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  330 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHH
Confidence            333444444444444444455555 6667899999999999999999999999999999999987654443333222222


Q ss_pred             HHHH----hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhh-HHHHHHhhHHhhhcccCch
Q 012159          195 LLPL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWE  269 (470)
Q Consensus       195 ~~~~----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~  269 (470)
                      ....    ...+.+..++..++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|++.|++.+++||+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~  410 (447)
T d1pw4a_         331 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  410 (447)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            2111    1344567777778889988888889999999999999999999999887776 5677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 012159          270 SVFYIFGLLGIAWFSGFKILQ  290 (470)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~  290 (470)
                      ..|++.+++.++..++...+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         411 GGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999988877666655444443