Citrus Sinensis ID: 012167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHEccccccccccHcccccccccccccccccccccHHHcHHHccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccc
Coil and Loop (DISEMBL)
MGLLLLTVQAhtrslkpptcvledgiascredeggKAVMLFAGLYIVALGVggikgslaphgaeqydettQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEdnkgwqwgfgiSTATILLSIPifllgspfyrnkiptgsplTTIFKVLTAAIFNtcksknssnavtevhssptcsnesrdegnsnvkekvpsqkpteDIKFLNRAlrnnpaypivqCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNtklgslkvppaslpvfpVIFILILapvynhviipFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNsglvnsseplpITFLWVALQYLFLGSADLFTLAGMMEFfftdaplsmRSLATSLSWASLAMGYYFSTVLVSIVNNItstyrhtpwlfgsnlnhyhLERFYWLMCILGGLNFLHFLFWAARykysstgp
Flexible Loop (DISEMBL)
MGLLLLTVQahtrslkpptcvlEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCksknssnavtevhssptcsnesrdegnsnvkekvpsqkpteDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNsglvnssepLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Low Complexity Region (SEG)
MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTvkeveevkivvkiFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRslatslswaslaMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Disordered region (IsUnstruct)
***LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYD*TTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC******************************************IKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY*****
Disordered Region (DISOPRED)
MGLLLLTVQAHTRSLKPP**************EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDET*****KQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAV***************************QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV**SEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS***
Disordered Region (DISEMBL)
MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS**************************************EDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Disordered Region (DISPRO)
MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSS************************TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	469	2.2.26 [Sep-21-2011]
Q8H157	585	Nitrate transporter 1.2 O	yes	no	0.989	0.793	0.663	0.0
Q8VYE4	567	Probable peptide/nitrate	no	no	0.968	0.800	0.655	1e-177
Q9FM20	589	Probable peptide/nitrate	no	no	0.940	0.748	0.633	1e-168
P46032	585	Peptide transporter PTR2	no	no	0.953	0.764	0.371	1e-88
Q93VV5	591	Probable peptide/nitrate	no	no	0.948	0.752	0.394	6e-86
Q9M390	570	Peptide transporter PTR1	no	no	0.944	0.777	0.373	1e-84
Q9LSF0	515	Probable peptide/nitrate	no	no	0.852	0.776	0.389	1e-83
Q56XQ6	601	Probable peptide/nitrate	no	no	0.931	0.727	0.373	7e-82
Q9LFB8	570	Peptide transporter PTR5	no	no	0.942	0.775	0.358	2e-81
Q9LSE8	521	Putative peptide/nitrate	no	no	0.876	0.788	0.395	5e-81

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/478 (66%), Positives = 383/478 (80%), Gaps = 14/478 (2%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GL++LT+QA T SL PP+C       +C E  G KA MLF GLY+VALGVGGIKGSLA 
Sbjct: 109 LGLIILTIQARTPSLMPPSC----DSPTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLAS 164

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+DE+T  GRKQRS FFNY+VFCL+CGAL+AVTFVVW+EDNKGW+WGFG+ST  I 
Sbjct: 165 HGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIF 224

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPT--CSN 178
           +SI IFL GS FYRNKIP GSPLTTI KVL AA    C S +SSNAV  +  SP+  C +
Sbjct: 225 VSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVS 284

Query: 179 ESRDEGNSNVKEKVPSQKP--------TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIV 230
           + + E  S  + + P Q+         T  +K LN A    P + +++CTV++VE+VKIV
Sbjct: 285 KGKKEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIV 344

Query: 231 VKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVY 290
           +K+ PIF  TIMLNCCLAQLSTFSVQQAA+MNTK+GSLK+PPASLP+FPV+FI+ILAP+Y
Sbjct: 345 LKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPIY 404

Query: 291 NHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 350
           +H+IIPFARK TKTE G+THLQRIG GL+LSI+AMAVAALVEIKRK VA +SGL++S E 
Sbjct: 405 DHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKET 464

Query: 351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVL 410
           LP+TFLW+ALQYLFLGSADLFTLAG++E+FFT+AP SMRSLATSLSWASLAMGYY S+V+
Sbjct: 465 LPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVI 524

Query: 411 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468
           VSIVN+IT +  +TPWL G ++N Y L+ FYWLMC+L   NFLH+LFWA RYKY STG
Sbjct: 525 VSIVNSITGSSGNTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRSTG 582

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1

 Score =  620 bits (1599), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/468 (65%), Positives = 363/468 (77%), Gaps = 14/468 (2%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GL+LLT+QA   SL PP C     +  C    G KA  LF GLY+V+LG+GGIKGSL  
Sbjct: 111 LGLILLTIQARRPSLMPPPCKSSAAL-RCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPS 169

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+DE T  GRKQRS FFNYYVFCLSCGAL+AVTFVVWIEDNKGW+WGFG+ST +I 
Sbjct: 170 HGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIF 229

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           LSI +FLLGS FY+NKIP GSPLTTIFKVL AA   +C SK SSN  T            
Sbjct: 230 LSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASIVSCSSKTSSNHFTS----------- 278

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 240
             E  S  +EK PSQ  T  +  LN+A+     +  ++CTV++VE+VKIV+K+ PIF  T
Sbjct: 279 -REVQSEHEEKTPSQSLTNSLTCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCT 337

Query: 241 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
           IMLNCCLAQLST+SV QAATMN K+ +  VP ASLPVFPV+F+LILAP Y+H+IIPFARK
Sbjct: 338 IMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARK 397

Query: 301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
           VTK+E+GITHLQRIG GL+LSIVAMAVAALVE+KRK+VA  +GL++S E LPITFLW+AL
Sbjct: 398 VTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIAL 457

Query: 361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 420
           QYLFLGSADLFTLAG++EFFFT+AP SMRSLATSLSWASLA+GYY S+V+V IVN +T +
Sbjct: 458 QYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKS 517

Query: 421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468
              +PWL G  LN   L+ FYWLMC+L  +NFLH+LFWA RYKY STG
Sbjct: 518 AGQSPWL-GEKLNRNRLDLFYWLMCVLSVVNFLHYLFWAKRYKYISTG 564

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2

 Score =  592 bits (1527), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/472 (63%), Positives = 359/472 (76%), Gaps = 31/472 (6%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GL++LTVQAH  S +P +                  V LF GLY+VALGVGGIKGSL P
Sbjct: 140 LGLMVLTVQAHEHSTEPWS-----------------RVFLFVGLYLVALGVGGIKGSLPP 182

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+DE T  GR+QRS FFNY++F LSCGALIAVT VVW+EDNKGW +GFG+STA IL
Sbjct: 183 HGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWLEDNKGWSYGFGVSTAAIL 242

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           +S+P+FL GS  YR K+P+GSP+TT+FKVLTAA++   K + +S  V   H+   C ++S
Sbjct: 243 ISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRRTSRIVVTCHTRNDC-DDS 301

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI-VQCTVKEVEEVKIVVKIFPIFMS 239
             + N +  +            FL   +R   + P  ++CT ++V++VKIV+KI PIFMS
Sbjct: 302 VTKQNCDGDDGFLG-------SFLGEVVRERESLPRPLRCTEEQVKDVKIVIKILPIFMS 354

Query: 240 TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFAR 299
           TIMLNCCLAQLSTFSVQQA+TMNTKLGS  VPPA+LPVFPV+F++ILAP YNH+++P AR
Sbjct: 355 TIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTYNHLLLPLAR 414

Query: 300 KVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE-----PLPIT 354
           K TKTE GITHLQRIGTGL+LSIVAMAVAALVE KRK V V+    N+S      PLPIT
Sbjct: 415 KSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSSYSSSPLPIT 474

Query: 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 414
           FLWVA+QY+FLGSADLFTLAGMMEFFFT+AP +MRSLATSLSWASLAMGYYFS+VLVS V
Sbjct: 475 FLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMGYYFSSVLVSAV 534

Query: 415 NNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466
           N +T    H PWL G NLN YHLERFYWLMC+L G+NFLH+LFWA+RY Y S
Sbjct: 535 NFVTGLNHHNPWLLGENLNQYHLERFYWLMCVLSGINFLHYLFWASRYVYRS 586

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  327 bits (837), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/471 (37%), Positives = 282/471 (59%), Gaps = 24/471 (5%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +G+  LT+ A   +LKP  C+ +     C      +  M F GLY++ALG GGIK  ++ 
Sbjct: 125 IGMSALTLSASVPALKPAECIGD----FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSS 180

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
            GA+Q+D+T    R ++++FFN++ F ++ GAL++ + +VWI++N+GW  GFGI T  + 
Sbjct: 181 FGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMG 240

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           L+I  F  G+P YR + P GSP+T I +V+ A+       + SS  V E     T   E+
Sbjct: 241 LAIASFFFGTPLYRFQKPGGSPITRISQVVVASF------RKSSVKVPE---DATLLYET 291

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRAL--------RNNPAYPIVQCTVKEVEEVKIVVK 232
           +D+ ++    +    + T+D ++L++A           + +     CTV +VEE+KI+++
Sbjct: 292 QDKNSAIAGSR--KIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIR 349

Query: 233 IFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNH 292
           +FPI+ S I+ +   AQ+ST  VQQ   MN K+GS ++PPA+L  F    ++I  P+Y+ 
Sbjct: 350 MFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDR 409

Query: 293 VIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352
            I+P ARK T  + G T +QR+G GL +S++ MA AA+VEI R  +A + GLV S  P+P
Sbjct: 410 FIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVP 469

Query: 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVS 412
           I+ LW   QY  LG+A++F   G +EFF+  +P +MRSL ++L+  + A+G Y S+++++
Sbjct: 470 ISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILT 529

Query: 413 IVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 463
           +V   T+      W+   NLN  HL+ F+WL+  L  +N   + F AARYK
Sbjct: 530 LVTYFTTRNGQEGWI-SDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYK 579

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  318 bits (815), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 187/474 (39%), Positives = 273/474 (57%), Gaps = 29/474 (6%)

Query: 2   GLLLLTVQAHTRSLKPPTC-VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           G +LL+VQAH   LKPP C  L D   +C E +G KA++ F  LY+VALG G +K ++  
Sbjct: 126 GFILLSVQAHLPQLKPPKCNPLID--QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIA 183

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGA+Q+ ++     K+ S++FN   F  S G LIA+T +VW++ + G   GFG+S A + 
Sbjct: 184 HGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMT 243

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           + I   + G+ ++RNK P  S  T I  V+ AAI    K K +S       S P   +  
Sbjct: 244 MGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAIL---KRKLAS------PSDPRMLHGD 294

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRAL-----RNNPAYPIVQCTVKEVEEVKIVVKIFP 235
               N  V        P    +FL++A       N    P   CTV +VE+VK ++ + P
Sbjct: 295 HHVANDVVPSSTLPHTPR--FRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVP 352

Query: 236 IFMSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVI 294
           IF STI+ N  LAQL TFSVQQ ++MNT+L  S  +PPASL   P I ++ L P+Y+  +
Sbjct: 353 IFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFL 412

Query: 295 IPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354
           +PFARK+T    GI  L RIG GL LS  +M  AA++E KR+  +V  G +       ++
Sbjct: 413 VPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRI-------LS 465

Query: 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 414
             W+  Q+L  G +++FT  G++EFF+  +   M S   +L++ S + G+YFS+VLVS+V
Sbjct: 466 IFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVV 525

Query: 415 NNITSTYRHTP-WLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 467
           N ITST   +  WL  ++LN   L+ FYWL+ +L  LNFL +LFW +R+   S+
Sbjct: 526 NKITSTSVDSKGWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFW-SRWNIKSS 578

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/474 (37%), Positives = 275/474 (58%), Gaps = 31/474 (6%)

Query: 2   GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
           G+ LLT+ A    LKP  C  +    +C  +    AV  F  LY++ALG GGIK  ++  
Sbjct: 109 GMTLLTLSASVPGLKPGNCNAD----TCHPNSSQTAV-FFVALYMIALGTGGIKPCVSSF 163

Query: 62  GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
           GA+Q+DE  +  + ++S+FFN++ F ++ GALIA T +VWI+ N GW WGFG+ T  +++
Sbjct: 164 GADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVI 223

Query: 122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHS--SPTCSNE 179
           ++  F  GS FYR + P GSPLT IF+V+ AA       +  S  V E  S    T  +E
Sbjct: 224 AVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF------RKISVKVPEDKSLLFETADDE 277

Query: 180 SRDEGNSNVKEKVPSQKPTEDIKFLNRA--------LRNNPAYPIVQCTVKEVEEVKIVV 231
           S  +G+  +         T+++KF ++A        +++    P   C+V +VEE+K ++
Sbjct: 278 SNIKGSRKLVH-------TDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSII 330

Query: 232 KIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVY 290
            + P++ + I+     +Q+ST  V Q  TM+  +G + ++P ASL +F  + +L   PVY
Sbjct: 331 TLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVY 390

Query: 291 NHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 350
           +  IIP ARK T+ E G T LQR+G GL++SI AM  A ++E+ R    V +      + 
Sbjct: 391 DQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDY-VKTHNAYDQKQ 449

Query: 351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVL 410
           + ++  W   QYL +G A++FT  G +EFF+  AP +MRSL ++LS  ++A+G Y STVL
Sbjct: 450 IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVL 509

Query: 411 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 464
           V++V  IT       W+   NLN  HL+ F++L+  L  LNFL +L+ + RYKY
Sbjct: 510 VTVVMKITKKNGKPGWI-PDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKY 562

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis thaliana GN=At3g25260 PE=2 SV=1

 Score =  310 bits (795), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/473 (38%), Positives = 267/473 (56%), Gaps = 73/473 (15%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK------AVMLFAGLYIVALGVGGI 54
           +GL++LT+QAH   L+P               +GGK      + +LF GLY +A+GVGG+
Sbjct: 105 LGLIMLTLQAHITKLQP---------------QGGKKPSTPQSTVLFTGLYAIAIGVGGV 149

Query: 55  KGSLAPHGAEQYDETTQLGRKQR--SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 112
           KGSL  HG +Q        R QR  S FFN+Y F +  G  +AVT +VWIE+N GW   F
Sbjct: 150 KGSLPAHGGDQIGT-----RNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSF 204

Query: 113 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHS 172
            ISTA +  +I +F+ G P YR K P GSPLT I  V  +A  N  +    +  VT+ H+
Sbjct: 205 TISTAVLASAIFVFVAGCPMYRFKRPAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHN 264

Query: 173 SPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVK 232
           S   S                        KFLN+A  NN      + +  +VEE +  + 
Sbjct: 265 STDKSIHH------------------NKFKFLNKAKLNN------KISATQVEETRTFLA 300

Query: 233 IFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYN 291
           + PIF STI++NCC+AQ+ TFSVQQ    N KL  S ++P ASL   P++ +L    +Y 
Sbjct: 301 LLPIFGSTIIMNCCVAQMGTFSVQQGMVTNRKLSRSFEIPVASLNAIPLLCMLSSLALYE 360

Query: 292 HVIIPFARKV-TKTEMGIT-HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 349
                F +++ + +E   + +L+RIG GL L+ ++MAVAA+VE+KRK  AV++       
Sbjct: 361 ----LFGKRILSNSERSSSFNLKRIGYGLALTSISMAVAAIVEVKRKHEAVHNN------ 410

Query: 350 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTV 409
            + I+  W+ LQ++ L  +D+ T+ GM+EFFF ++P SMRS++T+L W S AMG++ S+V
Sbjct: 411 -IKISVFWLELQFVMLSLSDMLTVGGMLEFFFRESPASMRSMSTALGWCSTAMGFFLSSV 469

Query: 410 LVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462
           LV +VN IT   R        +LN   LE FY ++C+L  LN  +++FWA RY
Sbjct: 470 LVEVVNGITGWLR-------DDLNESRLELFYLVLCVLNTLNLFNYIFWAKRY 515

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1

 Score =  305 bits (780), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 175/469 (37%), Positives = 264/469 (56%), Gaps = 32/469 (6%)

Query: 2   GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
           G +LL+VQAH   L+PP C ++     C E  G KA  L+  L +VALG G +K ++  H
Sbjct: 123 GFILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISH 182

Query: 62  GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
           GA Q+        ++ S+FFN   F  S G LIA+T +VW++ + G   GFG+S A +  
Sbjct: 183 GANQFQRK---DLRKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAA 239

Query: 122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 181
            +   + G+ FYRNK P+GS  T I +V  AAI  T + +   +    VH   T      
Sbjct: 240 GMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAI--TKRKQICPSNPNMVHQPST------ 291

Query: 182 DEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAY----PIVQCTVKEVEEVKIVVKIFPIF 237
                 VK  + S K     +FL++A           P   CT+++V +VKI++ + PIF
Sbjct: 292 --DLVRVKPLLHSNK----FRFLDKACIKTQGKAMESPWRLCTIEQVHQVKILLSVIPIF 345

Query: 238 MSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIP 296
             TI+ N  LAQL TFSVQQ ++MNT +  + ++PPASL   P I ++   P+Y    +P
Sbjct: 346 ACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVP 405

Query: 297 FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL 356
            ARK+T  + GI+ LQRIGTGL L+  +M  AALVE KR+   +   ++       ++  
Sbjct: 406 LARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQNVM-------LSIF 458

Query: 357 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416
           W+A Q+L  G +++FT  G++EFF+  +  SM+S  T++++ S + G+Y S+VLVS VN 
Sbjct: 459 WIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNR 518

Query: 417 ITSTY---RHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462
           +TS+        WL  ++LN   L+ FYWL+  L  +NF ++LFW+  Y
Sbjct: 519 VTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWY 567

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  303 bits (776), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 269/480 (56%), Gaps = 38/480 (7%)

Query: 2   GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
           G+ LLT+ A    L P TC  E    +C    G  A+  F  LY++ALG GGIK  ++  
Sbjct: 110 GMTLLTISASVPGLTP-TCSGE----TCHATAGQTAIT-FIALYLIALGTGGIKPCVSSF 163

Query: 62  GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
           GA+Q+D+T +  ++ +S+FFN++ F ++ GA+IA + +VWI+ N GW WG G+ T  + +
Sbjct: 164 GADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAI 223

Query: 122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 181
           ++  F  GS FYR + P GSPLT + +V+ A+       + S   + E        +ES 
Sbjct: 224 AVVFFFAGSNFYRLQKPGGSPLTRMLQVIVAS------CRKSKVKIPE--------DESL 269

Query: 182 DEGNSNVKEKVPSQKPTEDIKFL-------------NRALRNNPAYPIVQCTVKEVEEVK 228
              N + +  +   +  E  K L             N+    + ++ +  CTV +VEE+K
Sbjct: 270 LYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKL--CTVTQVEELK 327

Query: 229 IVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILA 287
            ++++ PI+ + I+     +Q+ T  V Q  T++  +G + K+P ASL +F  + +L  A
Sbjct: 328 ALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWA 387

Query: 288 PVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNS 347
           PVY+ +I+PFARK T  E G T LQRIG GL++SI +M  A ++E+ R        L N 
Sbjct: 388 PVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYN- 446

Query: 348 SEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFS 407
            E +P+T  W   QY  +G A++FT  G +EFF+  AP +MRSL ++LS  ++A G Y S
Sbjct: 447 EETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLS 506

Query: 408 TVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 467
           T LV++V  +T +     W+   NLN+ HL+ F+WL+  L  LNFL +L+ A  Y Y  T
Sbjct: 507 TFLVTLVTKVTRSGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKT 565

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis thaliana GN=At3g25280 PE=1 SV=1

 Score =  301 bits (772), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 185/468 (39%), Positives = 264/468 (56%), Gaps = 57/468 (12%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           MGL+LLT QAH   L P     +D   S  +     + +LF GLY +A+G GG+K SL  
Sbjct: 105 MGLILLTFQAHNPKLLPE----KDKTPSTLQ-----SAILFTGLYAMAIGTGGLKASLPS 155

Query: 61  HGAEQYDETTQLGRKQR--SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT 118
           HG +Q D      R  R  S FF++  F +  G L+AVT V+WIE+ KGW W F IS   
Sbjct: 156 HGGDQIDR-----RNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGI 210

Query: 119 ILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSN 178
           +  ++ IF +G PFYR K P GSPL  I  V+ +A     +++N S+   E+        
Sbjct: 211 LATALCIFTVGLPFYRFKRPNGSPLKKIAIVIISA----ARNRNKSDLDEEMMRGLI--- 263

Query: 179 ESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFM 238
            S  + NS+ K           +K++++A  N         +  EVEE +  + + PIF 
Sbjct: 264 -SIYKNNSHNK-----------LKWIDKATLNK------NISETEVEETRTFLGLLPIFG 305

Query: 239 STIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIPF 297
           STI+++CC+AQLSTFS QQ   MN KL  S ++P  SL   P+IF+L+  P+Y      F
Sbjct: 306 STIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIPVPSLTAIPLIFMLLSIPLYEF----F 361

Query: 298 ARKV---TKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354
            +K+           +L+RIG GL LS V+MAV+A+VE KRK   V++          I+
Sbjct: 362 GKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVSAIVEAKRKHEVVHNN-------FRIS 414

Query: 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 414
            LW+  QYL L  +D+ TL GM+EFF+ +AP +M+S++T+L W S A+G++ ST LV + 
Sbjct: 415 VLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTALGWCSTALGFFLSTTLVEVT 474

Query: 415 NNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462
           N +T    H  WL G +LN   LE FY L+C+L  LN L+++FWA RY
Sbjct: 475 NAVTGRLGH-QWLGGEDLNKTRLELFYVLLCVLNTLNLLNYIFWAKRY 521

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
297734029	610	unnamed protein product [Vitis vinifera]	1.0	0.768	0.746	0.0
225456664	579	PREDICTED: nitrate transporter 1.2-like	1.0	0.810	0.746	0.0
255540909	591	nitrate transporter, putative [Ricinus c	1.0	0.793	0.756	0.0
356513553	590	PREDICTED: nitrate transporter 1.2-like	1.0	0.794	0.724	0.0
224121540	481	predicted protein [Populus trichocarpa]	0.991	0.966	0.748	0.0
356565069	593	PREDICTED: nitrate transporter 1.2-like	1.0	0.790	0.727	0.0
255558232	473	nitrate transporter, putative [Ricinus c	0.993	0.985	0.712	0.0
359473379	616	PREDICTED: nitrate transporter 1.2-like	0.989	0.753	0.707	0.0
356500557	580	PREDICTED: nitrate transporter 1.2-like	0.991	0.801	0.687	0.0
224100445	575	predicted protein [Populus trichocarpa]	0.987	0.805	0.697	0.0

>gi|297734029|emb|CBI15276.3| unnamed protein product [Vitis vinifera]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/469 (74%), Positives = 397/469 (84%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GLL+L +QAH  SLKPP C L +    CRE +GGKA MLFAGLY+VALGVGGIKGSL P
Sbjct: 140 VGLLILAIQAHVPSLKPPACDLGNISNPCREADGGKAGMLFAGLYLVALGVGGIKGSLPP 199

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+D+ T  GRKQRS FFNYYVF LSCGALIAVTFVVWIEDNKGWQWGFGISTA+IL
Sbjct: 200 HGAEQFDDNTPKGRKQRSTFFNYYVFSLSCGALIAVTFVVWIEDNKGWQWGFGISTASIL 259

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           +SIPIFLLGS  YR KIPTGSP+TTI KVL AAI N  K +N SN+V  + +SP+ + E 
Sbjct: 260 ISIPIFLLGSATYRTKIPTGSPITTIVKVLVAAICNAYKLRNCSNSVMSMATSPSYTTEI 319

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 240
             +  S  KE VP Q PTE +KFLN A+ + P +  ++CTVK+VEEVKIV++I PIF  T
Sbjct: 320 GGKEESCSKEMVPRQAPTESLKFLNNAVIDKPFHSALECTVKQVEEVKIVLRILPIFACT 379

Query: 241 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
           IMLNCCLAQLSTFSVQQAATMNTKLG+LKVPPASLP+FPV+FI+ILAP YNH+IIPF R+
Sbjct: 380 IMLNCCLAQLSTFSVQQAATMNTKLGTLKVPPASLPIFPVLFIMILAPTYNHIIIPFTRR 439

Query: 301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
            TKTEMGITHLQRIGTGLILSIVAM VAA VEIKRKRVA  SGLV+SSEPLPITF WVAL
Sbjct: 440 TTKTEMGITHLQRIGTGLILSIVAMVVAAFVEIKRKRVAAESGLVHSSEPLPITFFWVAL 499

Query: 361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 420
           QYLFLGSADLFTLAG+MEFFFT+AP SMRSLAT+LSWASLAMGYY S+VLVSIVN++T++
Sbjct: 500 QYLFLGSADLFTLAGLMEFFFTEAPTSMRSLATALSWASLAMGYYLSSVLVSIVNSVTNS 559

Query: 421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 469
           Y H  WLFG+NLNHYHLE+FYWLMC L GLNFLH+L WA+RYKY +  P
Sbjct: 560 YSHHAWLFGNNLNHYHLEKFYWLMCGLSGLNFLHYLLWASRYKYRTASP 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456664|ref|XP_002271787.1| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/469 (74%), Positives = 397/469 (84%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GLL+L +QAH  SLKPP C L +    CRE +GGKA MLFAGLY+VALGVGGIKGSL P
Sbjct: 109 VGLLILAIQAHVPSLKPPACDLGNISNPCREADGGKAGMLFAGLYLVALGVGGIKGSLPP 168

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+D+ T  GRKQRS FFNYYVF LSCGALIAVTFVVWIEDNKGWQWGFGISTA+IL
Sbjct: 169 HGAEQFDDNTPKGRKQRSTFFNYYVFSLSCGALIAVTFVVWIEDNKGWQWGFGISTASIL 228

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           +SIPIFLLGS  YR KIPTGSP+TTI KVL AAI N  K +N SN+V  + +SP+ + E 
Sbjct: 229 ISIPIFLLGSATYRTKIPTGSPITTIVKVLVAAICNAYKLRNCSNSVMSMATSPSYTTEI 288

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 240
             +  S  KE VP Q PTE +KFLN A+ + P +  ++CTVK+VEEVKIV++I PIF  T
Sbjct: 289 GGKEESCSKEMVPRQAPTESLKFLNNAVIDKPFHSALECTVKQVEEVKIVLRILPIFACT 348

Query: 241 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
           IMLNCCLAQLSTFSVQQAATMNTKLG+LKVPPASLP+FPV+FI+ILAP YNH+IIPF R+
Sbjct: 349 IMLNCCLAQLSTFSVQQAATMNTKLGTLKVPPASLPIFPVLFIMILAPTYNHIIIPFTRR 408

Query: 301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
            TKTEMGITHLQRIGTGLILSIVAM VAA VEIKRKRVA  SGLV+SSEPLPITF WVAL
Sbjct: 409 TTKTEMGITHLQRIGTGLILSIVAMVVAAFVEIKRKRVAAESGLVHSSEPLPITFFWVAL 468

Query: 361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 420
           QYLFLGSADLFTLAG+MEFFFT+AP SMRSLAT+LSWASLAMGYY S+VLVSIVN++T++
Sbjct: 469 QYLFLGSADLFTLAGLMEFFFTEAPTSMRSLATALSWASLAMGYYLSSVLVSIVNSVTNS 528

Query: 421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 469
           Y H  WLFG+NLNHYHLE+FYWLMC L GLNFLH+L WA+RYKY +  P
Sbjct: 529 YSHHAWLFGNNLNHYHLEKFYWLMCGLSGLNFLHYLLWASRYKYRTASP 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540909|ref|XP_002511519.1| nitrate transporter, putative [Ricinus communis] gi|223550634|gb|EEF52121.1| nitrate transporter, putative [Ricinus communis]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/469 (75%), Positives = 409/469 (87%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           MGLL+LTVQA + SLKP  CV      SC + +G KAVMLF GLY+VALGVGGIKGSL  
Sbjct: 109 MGLLVLTVQARSSSLKPLPCVSASTSISCEQVDGSKAVMLFTGLYLVALGVGGIKGSLPS 168

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+DE TQ GRKQRSAFFNYYVFCLS GALIAVTF VWIEDNKGWQWGFGISTATIL
Sbjct: 169 HGAEQFDENTQQGRKQRSAFFNYYVFCLSFGALIAVTFAVWIEDNKGWQWGFGISTATIL 228

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           LSIP+FLLGSP YRNK+P+GSP+TTI KVL AA++NTCK +  +NAV  V +S + + E+
Sbjct: 229 LSIPVFLLGSPTYRNKVPSGSPITTILKVLIAAVYNTCKPQTPNNAVMGVDTSSSYTTET 288

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 240
            +  +S ++E+  +Q PTE ++FL+RA+ N    P ++CTVK+VEEVK+V+KI PIFMST
Sbjct: 289 SEVEDSYIREEALNQTPTESLEFLDRAVMNKSINPTLRCTVKDVEEVKVVIKILPIFMST 348

Query: 241 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
           IMLNCCLAQLSTFSVQQA+TMNTKLGSLKVPPASLPVFPVIFI+ILAP+YNH+I PFARK
Sbjct: 349 IMLNCCLAQLSTFSVQQASTMNTKLGSLKVPPASLPVFPVIFIMILAPIYNHIISPFARK 408

Query: 301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
           VTK+EMGITHLQRIGTGL+LSIVAMA+AALVE+KRK VA ++GL +S++PLPITFLW+AL
Sbjct: 409 VTKSEMGITHLQRIGTGLVLSIVAMALAALVEMKRKGVATSAGLTDSAKPLPITFLWIAL 468

Query: 361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 420
           QYLFLGSADLFTLAGMMEFFFT+APLSMRSLATSLSWASLAMGYY S+VLVSIVN +T  
Sbjct: 469 QYLFLGSADLFTLAGMMEFFFTEAPLSMRSLATSLSWASLAMGYYLSSVLVSIVNAVTGA 528

Query: 421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 469
           YRHT WLFGSNLNHYHLERFYWLMCIL G+NFLH+LFW+ RY+Y ST P
Sbjct: 529 YRHTSWLFGSNLNHYHLERFYWLMCILSGINFLHYLFWSCRYRYKSTSP 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513553|ref|XP_003525477.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/472 (72%), Positives = 398/472 (84%), Gaps = 3/472 (0%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           MGLL+LT+QAH  SLKPP CV+ +  + C +  G  AVMLFAGLY+VALGVGGIKGSL P
Sbjct: 115 MGLLMLTIQAHKPSLKPPNCVIGNTDSPCDKIHGADAVMLFAGLYLVALGVGGIKGSLPP 174

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+DE T  GRKQRSAFFNY+VF LSCGALIAVTFVVWIEDNKGW+WG  +STA+IL
Sbjct: 175 HGAEQFDENTPEGRKQRSAFFNYFVFSLSCGALIAVTFVVWIEDNKGWKWGLVVSTASIL 234

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           LSIP+F+LGS  YR KIP GSP+T++FKVL AAI N CK+KNS+NAV  + +SP+ + E 
Sbjct: 235 LSIPVFILGSHKYRTKIPAGSPITSMFKVLVAAICNNCKAKNSTNAVRSMTTSPSHATER 294

Query: 181 RD--EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFM 238
            D  E +   KE V  Q  TE++KFLN+A+     +P+++CTVKEVEEVKIV +I PIFM
Sbjct: 295 EDGEEESKTTKEVVQGQTLTENLKFLNKAVMEPAVHPMLECTVKEVEEVKIVTRILPIFM 354

Query: 239 STIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFA 298
           STIMLNCCLAQLSTFSVQQ+ATM+T LGS KVPPASLPVFPV+F++ILAP+YNH+I+PFA
Sbjct: 355 STIMLNCCLAQLSTFSVQQSATMSTMLGSFKVPPASLPVFPVLFVMILAPLYNHIIVPFA 414

Query: 299 RKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 358
           RK TKTEMGITHLQRIGTGL LSIVAMAVAALVE KRK+ A   GL++S++PLPITFLWV
Sbjct: 415 RKATKTEMGITHLQRIGTGLFLSIVAMAVAALVETKRKKTAFKFGLLDSAKPLPITFLWV 474

Query: 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 418
           ALQY+FLGSADLFTLAGMMEFFFT+AP SMRSLAT+LSWASLAMGY+ STVLVS +N +T
Sbjct: 475 ALQYIFLGSADLFTLAGMMEFFFTEAPWSMRSLATALSWASLAMGYFLSTVLVSTINKVT 534

Query: 419 STYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS-STGP 469
             + HTPWL G+NLNHYHLERFYWLMC+L GLNF+HFLFWA  YKY  ST P
Sbjct: 535 GAFGHTPWLLGANLNHYHLERFYWLMCVLSGLNFVHFLFWANSYKYRCSTKP 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121540|ref|XP_002318610.1| predicted protein [Populus trichocarpa] gi|222859283|gb|EEE96830.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/466 (74%), Positives = 400/466 (85%), Gaps = 1/466 (0%)

Query: 2   GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
           G+L+LT+QA   SLKPP C       SC + +G KA+MLFAGLY+VALGVGGIKGSL PH
Sbjct: 6   GMLVLTIQARVTSLKPPPCFSASTSISCEQVDGRKALMLFAGLYLVALGVGGIKGSLPPH 65

Query: 62  GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
           GAEQ+DE T  GRKQRSAFFNYYVFCLSCGALIAVT VVW+EDNKGWQWGFG+STATILL
Sbjct: 66  GAEQFDENTLQGRKQRSAFFNYYVFCLSCGALIAVTLVVWVEDNKGWQWGFGVSTATILL 125

Query: 122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 181
           SIPIFL+GSP YR K+P GSP+TTIFKVL AA+++T K ++SSN+   + +S T      
Sbjct: 126 SIPIFLIGSPVYRTKVPIGSPITTIFKVLAAAVYSTYKFRDSSNSAIGMDTSRTSYTTET 185

Query: 182 DEG-NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 240
            EG + N K K  SQ PTE ++F+NRA++N    P+++CT ++VEEVKIV++I PIFMST
Sbjct: 186 SEGEDRNTKRKELSQTPTESLEFVNRAVKNKTVNPMLECTAEQVEEVKIVLRILPIFMST 245

Query: 241 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
           IMLNCCLAQLSTFSVQQA+TMNT LGSLKVPPASLPVFPVIFI+ILAP+YNH+IIPFARK
Sbjct: 246 IMLNCCLAQLSTFSVQQASTMNTNLGSLKVPPASLPVFPVIFIMILAPIYNHIIIPFARK 305

Query: 301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
           VTK+EMGITHLQRIGTGL+LS+VAM VAALVE+KRKRVA NSGLVNS++PLPITFLW+AL
Sbjct: 306 VTKSEMGITHLQRIGTGLVLSVVAMVVAALVEMKRKRVAANSGLVNSTKPLPITFLWIAL 365

Query: 361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 420
           QYLFLGSADLFTLAGMMEFFFT+AP SMRSLATSLSWASLAMGYY S+VLVS++N IT  
Sbjct: 366 QYLFLGSADLFTLAGMMEFFFTEAPKSMRSLATSLSWASLAMGYYLSSVLVSLINTITGR 425

Query: 421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466
           YR TPWLFGSNLN Y LERFYWLMCIL GLN  H+LFWA+RYKY S
Sbjct: 426 YRDTPWLFGSNLNKYRLERFYWLMCILSGLNLSHYLFWASRYKYKS 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565069|ref|XP_003550767.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/474 (72%), Positives = 398/474 (83%), Gaps = 5/474 (1%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           MGLL+LT+QAH  SLKPP CV+ +  + C +  GG AVMLFAGLY+VALGVGGIKGSL P
Sbjct: 119 MGLLMLTIQAHKPSLKPPNCVIGNTDSPCDKIHGGDAVMLFAGLYLVALGVGGIKGSLPP 178

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+DE T  GRKQRS+FFNY+VF LSCGALIAVTFVVWIEDNKGW+WG  +STA+IL
Sbjct: 179 HGAEQFDENTPEGRKQRSSFFNYFVFSLSCGALIAVTFVVWIEDNKGWKWGLVVSTASIL 238

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           LSIP+FLLGS  YR KIP GSP+T++FKVL AAI N CK+KNSSNAV  + + P+ + E 
Sbjct: 239 LSIPVFLLGSHKYRTKIPAGSPITSMFKVLVAAICNNCKAKNSSNAVISMTTGPSHATER 298

Query: 181 RD--EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFM 238
           +D  E +   KE VP Q  T+++KFLN+A+     +P+++CTVKEVEEVKIV +I PIFM
Sbjct: 299 KDGEEQSKTRKEVVPGQTLTDNLKFLNKAVMEPAVHPMLECTVKEVEEVKIVARILPIFM 358

Query: 239 STIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFA 298
           STIMLNCCLAQLSTFSVQQ+ATMNT LGS KVPPASLPVFPV+FI+ILAP+YNH+I+PFA
Sbjct: 359 STIMLNCCLAQLSTFSVQQSATMNTMLGSFKVPPASLPVFPVLFIMILAPLYNHIIVPFA 418

Query: 299 RKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE-PLPITFLW 357
           RK TKTEMGITHLQRIGTGL LSIVAMAVAALVE KRK+ A   GL++S + PLPITFLW
Sbjct: 419 RKATKTEMGITHLQRIGTGLFLSIVAMAVAALVETKRKKTATKFGLLDSPKVPLPITFLW 478

Query: 358 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNI 417
           VALQY+FLGSADLFTLAGMMEFFFT+AP SMRSLAT+LSWASLAMGY+ STVLVS +N +
Sbjct: 479 VALQYIFLGSADLFTLAGMMEFFFTEAPWSMRSLATALSWASLAMGYFLSTVLVSTINKV 538

Query: 418 TSTY-RHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS-STGP 469
           T  +  HTPWL G+NLNHYHLERFYWLMC L GLNF+HFLFWA  YKY  ST P
Sbjct: 539 TGAFGSHTPWLLGANLNHYHLERFYWLMCALSGLNFVHFLFWANSYKYRCSTKP 592

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558232|ref|XP_002520143.1| nitrate transporter, putative [Ricinus communis] gi|223540635|gb|EEF42198.1| nitrate transporter, putative [Ricinus communis]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/466 (71%), Positives = 384/466 (82%)

Query: 2   GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
           GL++LTVQA + SLKPP C   +   SC+E +G KA MLF GLY+VALGVGGIKGSL  H
Sbjct: 4   GLVILTVQARSPSLKPPECDSGNPNISCQEVDGSKAAMLFIGLYLVALGVGGIKGSLPAH 63

Query: 62  GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
           GAEQ+DE++  GRKQRS FFNY+VFCLSCG LIAVTFVVWIEDNKGW+WGFGIST  I L
Sbjct: 64  GAEQFDESSPQGRKQRSTFFNYFVFCLSCGGLIAVTFVVWIEDNKGWEWGFGISTIAIFL 123

Query: 122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 181
           SIPIFL G+P YRNKIP+GS LTTI KVL AA  NTC S++ SNAV  + ++P+  N + 
Sbjct: 124 SIPIFLFGTPTYRNKIPSGSSLTTILKVLVAAAINTCTSRSPSNAVANLITNPSIVNATS 183

Query: 182 DEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTI 241
           +      KE   ++  T+    LNRA+   P +  ++CTVK+VEEVKIV+KI PIF  TI
Sbjct: 184 EGTKEKSKEMASTETATKAFSCLNRAVVKIPVHSALECTVKQVEEVKIVLKILPIFACTI 243

Query: 242 MLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV 301
           MLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP+FPV+FI+ILAP+Y+H IIPFARKV
Sbjct: 244 MLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPIFPVVFIMILAPIYDHFIIPFARKV 303

Query: 302 TKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQ 361
           TK+EMGITHLQRIG GL+LSIVAMA AALVEIKRKRVA +SGL++S EPLPITFLW+A Q
Sbjct: 304 TKSEMGITHLQRIGVGLVLSIVAMATAALVEIKRKRVATSSGLLDSEEPLPITFLWIAFQ 363

Query: 362 YLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY 421
           YLFLGSADLFTLAG++EFFFT+AP SMRSLATSLSWASLAMGYY S+V+VSIVN IT  Y
Sbjct: 364 YLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYYLSSVVVSIVNTITGNY 423

Query: 422 RHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 467
           +H PWL GSN+NHY LERFYWLMC+L  +NFLH+LFW   YKY ST
Sbjct: 424 KHHPWLSGSNINHYQLERFYWLMCVLSAVNFLHYLFWTNWYKYRST 469

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473379|ref|XP_002269693.2| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/469 (70%), Positives = 383/469 (81%), Gaps = 5/469 (1%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GL++LT+QA + SLKP  C       SC+   GGKA MLF GLY+VALGVGGIKGSL  
Sbjct: 140 LGLIVLTIQARSPSLKPLECKKGTADTSCQVLSGGKAGMLFVGLYLVALGVGGIKGSLPA 199

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ DE+T  GRKQRS FFNY+VFCLSCGALIAVT VVW+EDNKGW+WGFGI+T +I 
Sbjct: 200 HGAEQLDESTPQGRKQRSTFFNYFVFCLSCGALIAVTLVVWVEDNKGWEWGFGIATISIF 259

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTC-SNE 179
            SIP+FL GS  YRNKIP+GSPLTTIFKVL AA  N    ++ SNAV  + +SP+  +  
Sbjct: 260 ASIPVFLGGSATYRNKIPSGSPLTTIFKVLIAATLN----RSPSNAVASMATSPSYPTQN 315

Query: 180 SRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMS 239
           S++    N K  VP+Q PTE + FLNRA+ N P Y  V+CTV++VEEVKIV+KI PIF  
Sbjct: 316 SKEPEEENGKAIVPAQTPTESLGFLNRAVVNKPVYKAVECTVQQVEEVKIVIKILPIFAC 375

Query: 240 TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFAR 299
           TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP+FPV+F++ LAP+Y+H IIPFAR
Sbjct: 376 TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPIFPVLFMMTLAPIYDHFIIPFAR 435

Query: 300 KVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA 359
           KVTKTEMGI+HLQRIG GL+ SI+AMAVAALVE+KRKRVA N GL++S+E LPITF W+A
Sbjct: 436 KVTKTEMGISHLQRIGIGLVFSIIAMAVAALVEVKRKRVASNLGLIDSTEQLPITFFWIA 495

Query: 360 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITS 419
            QYLFLGSADLFTLAG+MEFFFT+AP  MRSLATSLSWASLAMGYY S+V+VSIVNN   
Sbjct: 496 FQYLFLGSADLFTLAGLMEFFFTEAPTGMRSLATSLSWASLAMGYYLSSVIVSIVNNFLG 555

Query: 420 TYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468
           +  H PWL G  LNHYHLERFYWLMC+L GLNFLH+LFWA RYKY STG
Sbjct: 556 SLNHRPWLSGRKLNHYHLERFYWLMCVLTGLNFLHYLFWACRYKYRSTG 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500557|ref|XP_003519098.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/471 (68%), Positives = 391/471 (83%), Gaps = 6/471 (1%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GL++LT+QA   SLKPP C L+     C+E  G KA MLF GLY+VALGVGGIKGSL  
Sbjct: 110 LGLIVLTIQARDPSLKPPKCDLD---TPCQEVNGSKAAMLFIGLYLVALGVGGIKGSLPA 166

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HG EQ+DETT  GRKQRS FFNY+VFCLSCGALIAVTFVVWIEDNKGWQWGF IST +I 
Sbjct: 167 HGGEQFDETTPSGRKQRSTFFNYFVFCLSCGALIAVTFVVWIEDNKGWQWGFAISTISIF 226

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           +SIP+FL GSP Y+NKIP+GSPLTTI KVL AA+ N+C  KN+S+AV  + SSP+  +  
Sbjct: 227 VSIPVFLAGSPTYKNKIPSGSPLTTILKVLIAALLNSCTYKNTSSAVVNMTSSPSNPHSG 286

Query: 181 RDEGNSN-VKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMS 239
           R E     VK    ++ PT ++KFLN+A+ N P Y  ++CTV++VE+VK+V+K+ PIF  
Sbjct: 287 RTESQQETVKASTTTETPTSNLKFLNKAVTNKPRYSSLECTVQQVEDVKVVLKMLPIFAC 346

Query: 240 TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFAR 299
           TI+LNCCLAQLSTFSV+QAATM+TKLGSLKVPP+SLPVFPV+FI+ILAP+Y+H+IIP+ R
Sbjct: 347 TIILNCCLAQLSTFSVEQAATMDTKLGSLKVPPSSLPVFPVVFIMILAPIYDHIIIPYTR 406

Query: 300 KVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNS-SEPLPITFLWV 358
           K TK+EMGITHLQRIG GL+LSIVAMAVAA+VEIKRKRVA  SGL++  ++PLPITFLW+
Sbjct: 407 KATKSEMGITHLQRIGFGLVLSIVAMAVAAIVEIKRKRVATQSGLLDDPTKPLPITFLWI 466

Query: 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 418
           A QYLFLGSADLFTLAG++EFFFT+AP+ MRSLATSLSWASLAMGYY S+V+VSIVN++T
Sbjct: 467 AFQYLFLGSADLFTLAGLLEFFFTEAPIRMRSLATSLSWASLAMGYYLSSVIVSIVNSVT 526

Query: 419 STYRHT-PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468
               H  PWL G+N NHYHLE+FYWLMC+L GLNFLH+L+WA +YKY  TG
Sbjct: 527 GNGTHNKPWLSGANFNHYHLEKFYWLMCVLSGLNFLHYLYWATKYKYRGTG 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100445|ref|XP_002311879.1| predicted protein [Populus trichocarpa] gi|222851699|gb|EEE89246.1| predicted protein [Populus trichocarpa]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/466 (69%), Positives = 388/466 (83%), Gaps = 3/466 (0%)

Query: 1   MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
           +GL++LTVQA + SLKPP C   +    C++ +G KA MLF GLY+VALGVGGIKGSL  
Sbjct: 109 LGLVILTVQARSSSLKPPACNPSNPTIPCQQIDGAKAAMLFTGLYLVALGVGGIKGSLPA 168

Query: 61  HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
           HGAEQ+DE+T  GRKQRS FFNY+VFCLSCGALIAVTFVVW+EDNKGW WGFGIST  IL
Sbjct: 169 HGAEQFDESTPQGRKQRSTFFNYFVFCLSCGALIAVTFVVWVEDNKGWVWGFGISTIAIL 228

Query: 121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
           LSIPIFL GS  YRNKIP+GSPL TI KVL AA  NTC S++S NA+  + +SP+  N +
Sbjct: 229 LSIPIFLAGSAAYRNKIPSGSPLATISKVLVAAGVNTCMSRSSGNAIASLTTSPSNPNPT 288

Query: 181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 240
             +   N    +P++ PT+ + +LN+A+ N P +  ++CTV++VEEVKIV+KIFPIF  T
Sbjct: 289 SKDAIDNSIAVMPAETPTKSLDWLNKAVVNKPIHSALECTVQQVEEVKIVIKIFPIFACT 348

Query: 241 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
           IMLNCCLAQLSTFSVQQA TM+TKLGSLKVPPASLPVFPV+FI++LAPVY+H+IIPFARK
Sbjct: 349 IMLNCCLAQLSTFSVQQADTMDTKLGSLKVPPASLPVFPVVFIMMLAPVYDHLIIPFARK 408

Query: 301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
           +TK+EMGITHLQRIG GL+LSI+AMAVAALVEIKRKRVA NSGLV+    LPITF W+A 
Sbjct: 409 LTKSEMGITHLQRIGIGLVLSIIAMAVAALVEIKRKRVAANSGLVDK---LPITFFWIAF 465

Query: 361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 420
           QYLFLGSADLFTLAG++EFFFT+AP  MRSLA SLSWASLAMGYY S+V+VSIVNN+T  
Sbjct: 466 QYLFLGSADLFTLAGLLEFFFTEAPAGMRSLAMSLSWASLAMGYYLSSVIVSIVNNVTGN 525

Query: 421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466
            ++ PWL G+N+NH+HLERFYWL+C+L  LNFLH+LFWA RYKYS+
Sbjct: 526 SKNRPWLSGTNINHHHLERFYWLLCVLSVLNFLHYLFWATRYKYST 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.989	0.793	0.625	3.7e-158
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.968	0.800	0.617	1.3e-148
TAIR|locus:2170683	589	AT5G62730 [Arabidopsis thalian	0.897	0.714	0.622	1.3e-145
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.948	0.752	0.377	1.5e-74
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.953	0.764	0.356	4e-74
TAIR|locus:2090325	515	AT3G25260 [Arabidopsis thalian	0.505	0.460	0.378	2.5e-73
TAIR|locus:2090230	521	AT3G25280 [Arabidopsis thalian	0.460	0.414	0.422	1.8e-72
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.944	0.777	0.354	1.8e-71
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.968	0.796	0.339	3.3e-70
TAIR|locus:2006907	601	AT1G33440 [Arabidopsis thalian	0.940	0.733	0.365	7e-70

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
 Identities = 299/478 (62%), Positives = 360/478 (75%)

Query:     1 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
             +GL++LT+QA T SL PP+C   D   +C E  G KA MLF GLY+VALGVGGIKGSLA 
Sbjct:   109 LGLIILTIQARTPSLMPPSC---DS-PTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLAS 164

Query:    61 HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
             HGAEQ+DE+T  GRKQRS FFNY+VFCL+CGAL+AVTFVVW+EDNKGW+WGFG+ST  I 
Sbjct:   165 HGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIF 224

Query:   121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPT--CSN 178
             +SI IFL GS FYRNKIP GSPLTTI KVL AA    C S +SSNAV  +  SP+  C +
Sbjct:   225 VSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVS 284

Query:   179 ESRDEGNSNVKEKVPSQK----P----TEDIKFLNRALRNNPAYPIVQCTXXXXXXXXXX 230
             + + E  S  + + P Q+    P    T  +K LN A    P + +++CT          
Sbjct:   285 KGKKEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIV 344

Query:   231 XXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVY 290
                 PIF  TIMLNCCLAQLSTFSVQQAA+MNTK+GSLK+PPASLP+FPV+FI+ILAP+Y
Sbjct:   345 LKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPIY 404

Query:   291 NHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 350
             +H+IIPFARK TKTE G+THLQRIG GL+LSI+AMAVAALVEIKRK VA +SGL++S E 
Sbjct:   405 DHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKET 464

Query:   351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVL 410
             LP+TFLW+ALQYLFLGSADLFTLAG++E+FFT+AP SMR            MGYY S+V+
Sbjct:   465 LPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVI 524

Query:   411 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468
             VSIVN+IT +  +TPWL G ++N Y L+ FYWLMC+L   NFLH+LFWA RYKY STG
Sbjct:   525 VSIVNSITGSSGNTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRSTG 582

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
 Identities = 289/468 (61%), Positives = 340/468 (72%)

Query:     1 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
             +GL+LLT+QA   SL PP C     +  C    G KA  LF GLY+V+LG+GGIKGSL  
Sbjct:   111 LGLILLTIQARRPSLMPPPCKSSAALR-CEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPS 169

Query:    61 HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
             HGAEQ+DE T  GRKQRS FFNYYVFCLSCGAL+AVTFVVWIEDNKGW+WGFG+ST +I 
Sbjct:   170 HGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIF 229

Query:   121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
             LSI +FLLGS FY+NKIP GSPLTTIFKVL AA   +C SK SSN  T           S
Sbjct:   230 LSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASIVSCSSKTSSNHFT-----------S 278

Query:   181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMST 240
             R E  S  +EK PSQ  T  +  LN+A+     +  ++CT              PIF  T
Sbjct:   279 R-EVQSEHEEKTPSQSLTNSLTCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCT 337

Query:   241 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
             IMLNCCLAQLST+SV QAATMN K+ +  VP ASLPVFPV+F+LILAP Y+H+IIPFARK
Sbjct:   338 IMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARK 397

Query:   301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
             VTK+E+GITHLQRIG GL+LSIVAMAVAALVE+KRK+VA  +GL++S E LPITFLW+AL
Sbjct:   398 VTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIAL 457

Query:   361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITST 420
             QYLFLGSADLFTLAG++EFFFT+AP SMR            +GYY S+V+V IVN +T +
Sbjct:   458 QYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKS 517

Query:   421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468
                +PWL G  LN   L+ FYWLMC+L  +NFLH+LFWA RYKY STG
Sbjct:   518 AGQSPWL-GEKLNRNRLDLFYWLMCVLSVVNFLHYLFWAKRYKYISTG 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)]

 Score = 1389 (494.0 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
 Identities = 271/435 (62%), Positives = 320/435 (73%)

Query:    38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVT 97
             V LF GLY+VALGVGGIKGSL PHGAEQ+DE T  GR+QRS FFNY++F LSCGALIAVT
Sbjct:   160 VFLFVGLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVT 219

Query:    98 FVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNT 157
              VVW+EDNKGW +GFG+STA IL+S+P+FL GS  YR K+P+GSP+TT+FKVLTAA++  
Sbjct:   220 VVVWLEDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAK 279

Query:   158 CKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI- 216
              K + +S  V   H+   C ++S  + N +  +            FL   +R   + P  
Sbjct:   280 YKKRRTSRIVVTCHTRNDC-DDSVTKQNCDGDDGFLGS-------FLGEVVRERESLPRP 331

Query:   217 VQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP 276
             ++CT              PIFMSTIMLNCCLAQLSTFSVQQA+TMNTKLGS  VPPA+LP
Sbjct:   332 LRCTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALP 391

Query:   277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRK 336
             VFPV+F++ILAP YNH+++P ARK TKTE GITHLQRIGTGL+LSIVAMAVAALVE KRK
Sbjct:   392 VFPVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRK 451

Query:   337 RVAV-----NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXX 391
              V V     N+    SS PLPITFLWVA+QY+FLGSADLFTLAGMMEFFFT+AP +MR  
Sbjct:   452 HVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSL 511

Query:   392 XXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLN 451
                       MGYYFS+VLVS VN +T    H PWL G NLN YHLERFYWLMC+L G+N
Sbjct:   512 ATSLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPWLLGENLNQYHLERFYWLMCVLSGIN 571

Query:   452 FLHFLFWAARYKYSS 466
             FLH+LFWA+RY Y S
Sbjct:   572 FLHYLFWASRYVYRS 586

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 179/474 (37%), Positives = 256/474 (54%)

Query:     2 GLLLLTVQAHTRSLKPPTC-VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
             G +LL+VQAH   LKPP C  L D   +C E +G KA++ F  LY+VALG G +K ++  
Sbjct:   126 GFILLSVQAHLPQLKPPKCNPLID--QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIA 183

Query:    61 HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
             HGA+Q+ ++     K+ S++FN   F  S G LIA+T +VW++ + G   GFG+S A + 
Sbjct:   184 HGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMT 243

Query:   121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
             + I   + G+ ++RNK P  S  T I  V+ AAI    K K +S       S P   +  
Sbjct:   244 MGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAIL---KRKLASP------SDPRMLHGD 294

Query:   181 RDEGNSNVKEKVPSQKPTEDIKFLNRAL-----RNNPAYPIVQCTXXXXXXXXXXXXXFP 235
                 N  V        P    +FL++A       N    P   CT              P
Sbjct:   295 HHVANDVVPSSTLPHTPR--FRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVP 352

Query:   236 IFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVI 294
             IF STI+ N  LAQL TFSVQQ ++MNT+L  S  +PPASL   P I ++ L P+Y+  +
Sbjct:   353 IFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFL 412

Query:   295 IPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354
             +PFARK+T    GI  L RIG GL LS  +M  AA++E KR+  +V  G +       ++
Sbjct:   413 VPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRI-------LS 465

Query:   355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIV 414
               W+  Q+L  G +++FT  G++EFF+  +   M              G+YFS+VLVS+V
Sbjct:   466 IFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVV 525

Query:   415 NNITSTYRHTP-WLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 467
             N ITST   +  WL  ++LN   L+ FYWL+ +L  LNFL +LFW+ R+   S+
Sbjct:   526 NKITSTSVDSKGWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWS-RWNIKSS 578

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 168/471 (35%), Positives = 262/471 (55%)

Query:     1 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP 60
             +G+  LT+ A   +LKP  C+ +     C      +  M F GLY++ALG GGIK  ++ 
Sbjct:   125 IGMSALTLSASVPALKPAECIGD----FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSS 180

Query:    61 HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120
              GA+Q+D+T    R ++++FFN++ F ++ GAL++ + +VWI++N+GW  GFGI T  + 
Sbjct:   181 FGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMG 240

Query:   121 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 180
             L+I  F  G+P YR + P GSP+T I +V+ A+       + SS  V E     T   E+
Sbjct:   241 LAIASFFFGTPLYRFQKPGGSPITRISQVVVASF------RKSSVKVPE---DATLLYET 291

Query:   181 RDEGNSNVKEKVPSQKPTEDIKFLNRAL------RNNPAYPIVQ--CTXXXXXXXXXXXX 232
             +D+ NS +      +  T+D ++L++A         +  Y      CT            
Sbjct:   292 QDK-NSAIAGSRKIEH-TDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIR 349

Query:   233 XFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNH 292
              FPI+ S I+ +   AQ+ST  VQQ   MN K+GS ++PPA+L  F    ++I  P+Y+ 
Sbjct:   350 MFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDR 409

Query:   293 VIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352
              I+P ARK T  + G T +QR+G GL +S++ MA AA+VEI R  +A + GLV S  P+P
Sbjct:   410 FIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVP 469

Query:   353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVS 412
             I+ LW   QY  LG+A++F   G +EFF+  +P +MR            +G Y S+++++
Sbjct:   470 ISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILT 529

Query:   413 IVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 463
             +V   T+      W+   NLN  HL+ F+WL+  L  +N   + F AARYK
Sbjct:   530 LVTYFTTRNGQEGWI-SDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2090325 AT3G25260 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 100/264 (37%), Positives = 150/264 (56%)

Query:   202 KFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATM 261
             KFLN+A  NN      + +              PIF STI++NCC+AQ+ TFSVQQ    
Sbjct:   276 KFLNKAKLNN------KISATQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVT 329

Query:   262 NTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV-TKTEMGIT-HLQRIGTGL 318
             N KL  S ++P ASL   P++ +L    +Y      F +++ + +E   + +L+RIG GL
Sbjct:   330 NRKLSRSFEIPVASLNAIPLLCMLSSLALYEL----FGKRILSNSERSSSFNLKRIGYGL 385

Query:   319 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMME 378
              L+ ++MAVAA+VE+KRK  AV++ +        I+  W+ LQ++ L  +D+ T+ GM+E
Sbjct:   386 ALTSISMAVAAIVEVKRKHEAVHNNI-------KISVFWLELQFVMLSLSDMLTVGGMLE 438

Query:   379 FFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 438
             FFF ++P SMR            MG++ S+VLV +VN IT       WL   +LN   LE
Sbjct:   439 FFFRESPASMRSMSTALGWCSTAMGFFLSSVLVEVVNGITG------WL-RDDLNESRLE 491

Query:   439 RFYWLMCILGGLNFLHFLFWAARY 462
              FY ++C+L  LN  +++FWA RY
Sbjct:   492 LFYLVLCVLNTLNLFNYIFWAKRY 515

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2090230 AT3G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
 Identities = 98/232 (42%), Positives = 138/232 (59%)

Query:   235 PIFMSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHV 293
             PIF STI+++CC+AQLSTFS QQ   MN KL  S ++P  SL   P+IF+L+  P+Y   
Sbjct:   302 PIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIPVPSLTAIPLIFMLLSIPLYEF- 360

Query:   294 IIPFARKVTK---TEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 350
                F +K++          +L+RIG GL LS V+MAV+A+VE KRK   V++        
Sbjct:   361 ---FGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVSAIVEAKRKHEVVHNNF------ 411

Query:   351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVL 410
               I+ LW+  QYL L  +D+ TL GM+EFF+ +AP +M+            +G++ ST L
Sbjct:   412 -RISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTALGWCSTALGFFLSTTL 470

Query:   411 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462
             V + N +T    H  WL G +LN   LE FY L+C+L  LN L+++FWA RY
Sbjct:   471 VEVTNAVTGRLGHQ-WLGGEDLNKTRLELFYVLLCVLNTLNLLNYIFWAKRY 521

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 168/474 (35%), Positives = 257/474 (54%)

Query:     2 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
             G+ LLT+ A    LKP  C  +    +C  +    AV  F  LY++ALG GGIK  ++  
Sbjct:   109 GMTLLTLSASVPGLKPGNCNAD----TCHPNSSQTAVF-FVALYMIALGTGGIKPCVSSF 163

Query:    62 GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
             GA+Q+DE  +  + ++S+FFN++ F ++ GALIA T +VWI+ N GW WGFG+ T  +++
Sbjct:   164 GADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVI 223

Query:   122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 181
             ++  F  GS FYR + P GSPLT IF+V+ AA F     K        V    +   E+ 
Sbjct:   224 AVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAA-FRKISVK--------VPEDKSLLFETA 274

Query:   182 DEGNSNVKEKVPSQK--PTEDIKFLNRA--------LRNNPAYPIVQCTXXXXXXXXXXX 231
             D+  SN+K    S+K   T+++KF ++A        +++    P   C+           
Sbjct:   275 DD-ESNIKG---SRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSII 330

Query:   232 XXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVY 290
                P++ + I+     +Q+ST  V Q  TM+  +G + ++P ASL +F  + +L   PVY
Sbjct:   331 TLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVY 390

Query:   291 NHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 350
             +  IIP ARK T+ E G T LQR+G GL++SI AM  A ++E+ R          +  + 
Sbjct:   391 DQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ- 449

Query:   351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVL 410
             + ++  W   QYL +G A++FT  G +EFF+  AP +MR            +G Y STVL
Sbjct:   450 IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVL 509

Query:   411 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 464
             V++V  IT       W+   NLN  HL+ F++L+  L  LNFL +L+ + RYKY
Sbjct:   510 VTVVMKITKKNGKPGWI-PDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKY 562

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 159/468 (33%), Positives = 249/468 (53%)

Query:     2 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
             G+ LLT+ A    L P TC  E    +C    G  A+  F  LY++ALG GGIK  ++  
Sbjct:   110 GMTLLTISASVPGLTP-TCSGE----TCHATAGQTAIT-FIALYLIALGTGGIKPCVSSF 163

Query:    62 GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
             GA+Q+D+T +  ++ +S+FFN++ F ++ GA+IA + +VWI+ N GW WG G+ T  + +
Sbjct:   164 GADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAI 223

Query:   122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNT-CKSKNSSNAVTEVHSSPTCSNES 180
             ++  F  GS FYR + P GSPLT + +V+ A+   +  K     + + E   + +    S
Sbjct:   224 AVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGS 283

Query:   181 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMST 240
             R   ++ +       K   + +  N+    + ++ +  CT              PI+ + 
Sbjct:   284 RKLEHTKILTFF--DKAAVETESDNKGAAKSSSWKL--CTVTQVEELKALIRLLPIWATG 339

Query:   241 IMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFAR 299
             I+     +Q+ T  V Q  T++  +G + K+P ASL +F  + +L  APVY+ +I+PFAR
Sbjct:   340 IVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFAR 399

Query:   300 KVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA 359
             K T  E G T LQRIG GL++SI +M  A ++E+ R        L N  E +P+T  W  
Sbjct:   400 KYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQV 458

Query:   360 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITS 419
              QY  +G A++FT  G +EFF+  AP +MR             G Y ST LV++V  +T 
Sbjct:   459 PQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTR 518

Query:   420 TYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 467
             +     W+   NLN+ HL+ F+WL+  L  LNFL +L+ A  Y Y  T
Sbjct:   519 SGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKT 565

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 170/465 (36%), Positives = 248/465 (53%)

Query:     2 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 61
             G +LL+VQAH   L+PP C ++     C E  G KA  L+  L +VALG G +K ++  H
Sbjct:   123 GFILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISH 182

Query:    62 GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL 121
             GA Q+ +   L  ++ S+FFN   F  S G LIA+T +VW++ + G   GFG+S A +  
Sbjct:   183 GANQF-QRKDL--RKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAA 239

Query:   122 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 181
              +   + G+ FYRNK P+GS  T I +V  AAI    K    SN    VH   T     +
Sbjct:   240 GMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITKR-KQICPSNP-NMVHQPSTDLVRVK 297

Query:   182 DEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTI 241
                +SN K +   +     IK   +A+ +    P   CT              PIF  TI
Sbjct:   298 PLLHSN-KFRFLDKAC---IKTQGKAMES----PWRLCTIEQVHQVKILLSVIPIFACTI 349

Query:   242 MLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARK 300
             + N  LAQL TFSVQQ ++MNT +  + ++PPASL   P I ++   P+Y    +P ARK
Sbjct:   350 IFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARK 409

Query:   301 VTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360
             +T  + GI+ LQRIGTGL L+  +M  AALVE KR+   +   ++       ++  W+A 
Sbjct:   410 LTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQNVM-------LSIFWIAP 462

Query:   361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITST 420
             Q+L  G +++FT  G++EFF+  +  SM+             G+Y S+VLVS VN +TS+
Sbjct:   463 QFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSS 522

Query:   421 Y---RHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462
                     WL  ++LN   L+ FYWL+  L  +NF ++LFW+  Y
Sbjct:   523 NGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWY 567

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H157	PTR19_ARATH	No assigned EC number	0.6631	0.9893	0.7931	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000089001 SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (560 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	469
pfam00854	372	pfam00854, PTR2, POT family	3e-78
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	3e-16
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-15
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	0.002

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  247 bits (634), Expect = 3e-78
 Identities = 109/375 (29%), Positives = 176/375 (46%), Gaps = 27/375 (7%)

Query: 27  ASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF 86
           A        +  + + GLY++ALG GGIK +++  GA+Q+DET      +R  FF+++ F
Sbjct: 22  AIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDET---QDPRRDGFFSWFYF 78

Query: 87  CLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIP-TGSPLTT 145
            ++ G+LIA     +++ N G+  GFG+    +LL++ +FLLGS  Y+ K P  GSP T 
Sbjct: 79  SINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTV 138

Query: 146 IFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLN 205
               +  A     K +   ++     +    +  S    +        +       KF  
Sbjct: 139 CIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKRS---ISQTKVHTRVAVIFIPLPKFWA 195

Query: 206 RALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKL 265
                             V  ++ ++ + PI+   I+ +    QL+T  V+Q  TM+  +
Sbjct: 196 LF-----------DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRII 244

Query: 266 GSL-KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVA 324
             L ++PPAS   F  + +LIL P+ + ++ P  R     + G+T  QR G G+ + IVA
Sbjct: 245 YPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVA 300

Query: 325 MAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA 384
             +AA+VE KR R A   GL +    +P+  LW   +    G      LAG +EF     
Sbjct: 301 NFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFISGVG----LAGALEFAPDAL 356

Query: 385 PLSMRSLATSLSWAS 399
           P SM SL T LS A+
Sbjct: 357 PSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 81.0 bits (200), Expect = 3e-16
 Identities = 65/301 (21%), Positives = 124/301 (41%), Gaps = 54/301 (17%)

Query: 41  FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF-- 98
             GL ++ALG GGIK  ++  G +Q++E        R  FF+++ F ++ G+L +     
Sbjct: 89  LVGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRFRFFSFFYFAINAGSLFSTIITP 145

Query: 99  -----VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAA 153
                V        +   FG+    + L++ +F +GS  Y+ K P G+    + KV+   
Sbjct: 146 ILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGN---IVSKVMKCI 202

Query: 154 IFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPA 213
           +F   K                                   +  +ED   L+      P 
Sbjct: 203 VFALKKR---------------------------------FRTRSEDWPRLHWLDWAAPK 229

Query: 214 YPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA 273
           Y I     + +   K ++++  +F+   M      Q  +    QA  M+  +G   + P 
Sbjct: 230 YLI-----RMIRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPD 284

Query: 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEI 333
            +     + +LIL P++++V+      + K     T L+++  G++L+ +A AVAAL++ 
Sbjct: 285 QMQAVNPLLVLILVPIFDYVV---YPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQN 341

Query: 334 K 334
           K
Sbjct: 342 K 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 69/380 (18%), Positives = 134/380 (35%), Gaps = 71/380 (18%)

Query: 39  MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 98
            L+ GL ++ +G G  K +++    E Y +       +R   F  +   ++ G+LIA   
Sbjct: 119 GLYIGLALIIVGTGLFKPNISSLLGELYPK----DDPRRDGGFTLFYMGINIGSLIAPII 174

Query: 99  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFY--------------RNKIPTGSPLT 144
              +  N GW  GFG++   +++ + IFLLG                     +P      
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL--GG 232

Query: 145 TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFL 204
            +  +L A +         S  +                        V S      I + 
Sbjct: 233 LVVMILAALLTLLLNQNTFSGVLL-----------------------VISILIA--IIYF 267

Query: 205 NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST-FSVQQAATMNT 263
             A R+           K  +E + ++   P+F+  ++      Q+ +  ++     +N 
Sbjct: 268 AEAFRSP----------KVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317

Query: 264 KLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIV 323
           ++   +VPPA        FI++ +P+   +     R   +    I        GLIL+ +
Sbjct: 318 QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK----FALGLILAGL 373

Query: 324 AMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD 383
              +  L  I        SGLV        +  W+ L Y+     +LF     +      
Sbjct: 374 GFLILLLAGIWF---GGPSGLV--------SVWWLVLSYVLQSFGELFISPVGLSMVTKL 422

Query: 384 APLSMRSLATSLSWASLAMG 403
           AP +++S   ++ + ++A G
Sbjct: 423 APPALKSFIMAMWFLTVAAG 442

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 40  LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 99
           +F GL  +A+G G  K + +    + Y+   +    +R   F  +   ++ G+ I+    
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLLA 161

Query: 100 VWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTA 152
             I +N G+  GF ++   +++ +  F  G    R+      PL+   K    
Sbjct: 162 GVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	469
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.51
PRK03545	390	putative arabinose transporter; Provisional	99.48
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.47
PRK10489	417	enterobactin exporter EntS; Provisional	99.47
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.42
TIGR00900	365	2A0121 H+ Antiporter protein.	99.42
PRK10054	395	putative transporter; Provisional	99.41
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.39
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.38
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.35
PRK12382	392	putative transporter; Provisional	99.35
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.32
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.31
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.31
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.3
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.27
PRK11663	434	regulatory protein UhpC; Provisional	99.26
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.26
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.25
PRK11010	491	ampG muropeptide transporter; Validated	99.24
PRK15011	393	sugar efflux transporter B; Provisional	99.24
TIGR00901	356	2A0125 AmpG-related permease.	99.24
PRK10504	471	putative transporter; Provisional	99.22
TIGR00895	398	2A0115 benzoate transport.	99.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.21
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.2
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.19
PRK12307	426	putative sialic acid transporter; Provisional	99.19
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.19
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.18
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.18
PRK03633	381	putative MFS family transporter protein; Provision	99.15
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.15
PRK10091	382	MFS transport protein AraJ; Provisional	99.15
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.15
PRK09705	393	cynX putative cyanate transporter; Provisional	99.14
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.14
KOG2532	466	consensus Permease of the major facilitator superf	99.13
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.12
PRK03699	394	putative transporter; Provisional	99.11
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.11
PRK09952	438	shikimate transporter; Provisional	99.1
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.1
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.1
TIGR00898	505	2A0119 cation transport protein.	99.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.06
TIGR00891	405	2A0112 putative sialic acid transporter.	99.06
PRK09528	420	lacY galactoside permease; Reviewed	99.05
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.05
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.04
PRK11043	401	putative transporter; Provisional	99.03
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.03
PRK03893	496	putative sialic acid transporter; Provisional	99.02
PF13347	428	MFS_2: MFS/sugar transport protein	99.01
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.99
PRK11902	402	ampG muropeptide transporter; Reviewed	98.99
PRK10642	490	proline/glycine betaine transporter; Provisional	98.99
PRK09848	448	glucuronide transporter; Provisional	98.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.96
PRK15075	434	citrate-proton symporter; Provisional	98.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.92
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.92
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.9
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.86
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.84
PRK09669	444	putative symporter YagG; Provisional	98.83
PLN00028	476	nitrate transmembrane transporter; Provisional	98.8
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.76
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
PRK10133	438	L-fucose transporter; Provisional	98.59
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.56
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.54
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.54
PRK11462	460	putative transporter; Provisional	98.48
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.46
KOG2533	495	consensus Permease of the major facilitator superf	98.42
PRK03545	390	putative arabinose transporter; Provisional	98.42
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.39
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.36
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.36
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.3
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.28
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.24
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.24
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.23
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.23
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.22
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.21
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.18
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.17
PRK10054	395	putative transporter; Provisional	98.15
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.14
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.13
TIGR00900	365	2A0121 H+ Antiporter protein.	98.13
PRK10091	382	MFS transport protein AraJ; Provisional	98.12
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.12
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.12
TIGR00805	633	oat sodium-independent organic anion transporter.	98.09
KOG0569	485	consensus Permease of the major facilitator superf	98.06
PRK11663	434	regulatory protein UhpC; Provisional	98.06
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.05
TIGR00893	399	2A0114 d-galactonate transporter.	98.04
TIGR00891	405	2A0112 putative sialic acid transporter.	98.02
PRK09874	408	drug efflux system protein MdtG; Provisional	97.99
PRK10504	471	putative transporter; Provisional	97.99
COG2211	467	MelB Na+/melibiose symporter and related transport	97.98
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.95
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.91
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.87
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.87
TIGR00895	398	2A0115 benzoate transport.	97.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.84
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.83
PRK03633	381	putative MFS family transporter protein; Provision	97.83
PRK09705	393	cynX putative cyanate transporter; Provisional	97.82
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.82
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.82
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.81
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.81
PRK03699	394	putative transporter; Provisional	97.79
PRK12382	392	putative transporter; Provisional	97.77
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.75
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.75
PRK12307	426	putative sialic acid transporter; Provisional	97.73
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.73
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.71
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.69
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.68
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.68
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.67
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.67
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.67
KOG2615	451	consensus Permease of the major facilitator superf	97.65
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.64
PRK05122	399	major facilitator superfamily transporter; Provisi	97.63
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.61
TIGR00805	633	oat sodium-independent organic anion transporter.	97.6
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.59
TIGR00898	505	2A0119 cation transport protein.	97.59
PRK11043	401	putative transporter; Provisional	97.58
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.56
PRK03893	496	putative sialic acid transporter; Provisional	97.56
PRK10489	417	enterobactin exporter EntS; Provisional	97.51
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.51
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.49
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.46
TIGR00901	356	2A0125 AmpG-related permease.	97.46
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.46
KOG3762	618	consensus Predicted transporter [General function	97.44
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.43
KOG2533	495	consensus Permease of the major facilitator superf	97.43
PTZ00207	591	hypothetical protein; Provisional	97.4
PRK10133	438	L-fucose transporter; Provisional	97.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.39
PRK11010	491	ampG muropeptide transporter; Validated	97.37
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.33
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.32
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.32
PLN00028	476	nitrate transmembrane transporter; Provisional	97.3
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.27
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.22
PRK11902	402	ampG muropeptide transporter; Reviewed	97.2
PRK10642	490	proline/glycine betaine transporter; Provisional	97.19
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.19
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.18
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.02
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.01
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.0
KOG0254	513	consensus Predicted transporter (major facilitator	96.99
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.94
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.81
KOG2532	466	consensus Permease of the major facilitator superf	96.79
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.79
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.79
KOG3626	735	consensus Organic anion transporter [Secondary met	96.75
PRK15011	393	sugar efflux transporter B; Provisional	96.71
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.7
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.57
PRK15075	434	citrate-proton symporter; Provisional	96.57
KOG0254	513	consensus Predicted transporter (major facilitator	96.54
PTZ00207	591	hypothetical protein; Provisional	96.49
PRK09952	438	shikimate transporter; Provisional	96.47
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.34
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.25
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.15
KOG2563	480	consensus Permease of the major facilitator superf	95.98
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.9
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.82
KOG2615	451	consensus Permease of the major facilitator superf	95.82
KOG3626	735	consensus Organic anion transporter [Secondary met	95.76
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.74
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.66
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	95.52
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	95.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.45
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.2
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.2
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	94.97
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.94
PRK09528	420	lacY galactoside permease; Reviewed	94.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.78
PRK11462	460	putative transporter; Provisional	94.64
KOG0569	485	consensus Permease of the major facilitator superf	94.55
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	94.51
PRK09669	444	putative symporter YagG; Provisional	94.46
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.25
PF13347	428	MFS_2: MFS/sugar transport protein	94.08
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	93.89
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.75
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.45
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	93.08
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.08
PRK10429	473	melibiose:sodium symporter; Provisional	92.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	92.45
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	92.11
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	91.2
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	90.76
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	89.36
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	88.75
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	88.25
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	87.56
COG2211	467	MelB Na+/melibiose symporter and related transport	87.32
PF01891	205	CbiM: Cobalt uptake substrate-specific transmembra	86.59
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.79
PRK09848	448	glucuronide transporter; Provisional	85.55
TIGR00788	468	fbt folate/biopterin transporter. The only functio	84.49
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	83.82
KOG0637	498	consensus Sucrose transporter and related proteins	83.4
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	82.22
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.04

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-68  Score=563.05  Aligned_cols=447  Identities=43%  Similarity=0.696  Sum_probs=400.1

Q ss_pred             CceeeehhhhhcCCCCCCCCCcccCCCcccCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHH
Q 012167            1 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF   80 (469)
Q Consensus         1 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~   80 (469)
                      +|+++||++++.|+++|++|........|+++...+...+|.+|.++++|+|+.|||+.++++|||++.+++++.++.++
T Consensus       116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f  195 (571)
T KOG1237|consen  116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF  195 (571)
T ss_pred             HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence            37889999999999999998434446689999999999999999999999999999999999999998888888888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccC
Q 012167           81 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS  160 (469)
Q Consensus        81 f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~  160 (469)
                      |+|+|+.+|+|++++.++..|++++.||.++|.+++++|++++++|+.+.+.|++++|.++|++.+.+|+++++++++..
T Consensus       196 FnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~  275 (571)
T KOG1237|consen  196 FNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAV  275 (571)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             -C-CCCcc--ccccccCCCCCCCCcc-ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHH
Q 012167          161 -K-NSSNA--VTEVHSSPTCSNESRD-EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFP  235 (469)
Q Consensus       161 -~-~~~~~--~~~~~~~~~~~~~~~~-d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~  235 (469)
                       . +++..  ...+.....+++.+++ |++++..+.++              .++...++|+.|+.++|||+|.++|++|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--------------~~~~~~~~w~lct~~~Vee~K~~lr~~P  341 (571)
T KOG1237|consen  276 VSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL--------------KDGLDANPWRLCTVTQVEEVKAVLRLLP  341 (571)
T ss_pred             CCCcchhccccccccccccCCcccchhhHhhccCCccc--------------ccccccCCccCCCceehhhhhhhhhhhH
Confidence             1 11111  1111123345667788 88887654321              0122457899999999999999999999


Q ss_pred             HHHhhHHHHHhhhcchhHHHHHHHHcccCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHH
Q 012167          236 IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI  314 (469)
Q Consensus       236 l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g-~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri  314 (469)
                      +|.+.++||+++.|+.|.++.|+.+||+++++ +++|+++++.++.+.++++.|+++++.+|+.||.++++++.++++|+
T Consensus       342 i~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqri  421 (571)
T KOG1237|consen  342 IWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRI  421 (571)
T ss_pred             HHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhhee
Confidence            99999999999999999999999999999987 99999999999999999999999999999999999887789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHH
Q 012167          315 GTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATS  394 (469)
Q Consensus       315 ~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~g  394 (469)
                      ++|++++.++|.+++++|.+|++.+.++    ..+..++|++||+|||+++|+||+|.+++++||+|++||++|||+.++
T Consensus       422 g~G~~~si~sm~~aa~vE~krl~~~~~~----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~a  497 (571)
T KOG1237|consen  422 GIGLVLSILSMAVAGIVEAKRLKTAVSL----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATA  497 (571)
T ss_pred             eccchHHHHHHHHHHHHHHHHhhhhhhc----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHH
Confidence            9999999999999999999999887651    122468999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167          395 LSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG-SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG  468 (469)
Q Consensus       395 l~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~-~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~  468 (469)
                      +|+++.++|++++.+++.++...|++  ..+|+ + +|+|.+|+++|||+++.++.++...|+.++++|++++..
T Consensus       498 l~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~-~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  498 LWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWL-GFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC--CcccC-ChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            99999999999999999999987753  34799 7 999999999999999999999999999999999998764

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-50  Score=405.83  Aligned_cols=366  Identities=19%  Similarity=0.297  Sum_probs=286.8

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      ....+|+++++|++|+|++|||++++++|||+++||    |||.+|++||+++|+|++++|++++++++++||+.+|.++
T Consensus       116 ~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a  191 (498)
T COG3104         116 GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA  191 (498)
T ss_pred             cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            367899999999999999999999999999999998    6899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccccC--CCCCCchh------HHHHH---HHHH-HhhccCCCCCccccccccCCCCCCCCcc-
Q 012167          116 TATILLSIPIFLLGSPFYRNKI--PTGSPLTT------IFKVL---TAAI-FNTCKSKNSSNAVTEVHSSPTCSNESRD-  182 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~--p~~~~l~~------~~~v~---~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  182 (469)
                      +++|++++++|+++++++.+..  |+.+|.+.      ...++   ..+. ... ...                +..+. 
T Consensus       192 avGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~----------------~~~~~~  254 (498)
T COG3104         192 AVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-LNQ----------------NTFSGV  254 (498)
T ss_pred             HHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH-HHH----------------HHHHHH
Confidence            9999999999999999987643  33344321      01111   1110 000 000                00000 


Q ss_pred             -ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-H
Q 012167          183 -EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-T  260 (469)
Q Consensus       183 -d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~  260 (469)
                       ....+..         ...++...       ..+   ++.+ +|+||+++++++++..++||++|+|++|++..|+. +
T Consensus       255 ~~~~~i~~---------~~~~~~~~-------~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~  314 (498)
T COG3104         255 LLVISILI---------AIIYFAEA-------FRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRN  314 (498)
T ss_pred             HHHHHHHH---------HHHHHHHH-------hcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence             0000000         00111100       000   1233 88999999999999999999999999999999985 6


Q ss_pred             cccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012167          261 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV  340 (469)
Q Consensus       261 ~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~  340 (469)
                      +|++..|+++|++|+|++||+++++++|+++++|+|+.++.  +  ++++..|+++|+++++++++++........    
T Consensus       315 v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~--~--~ps~~~KFalGl~l~g~~fl~l~~~~~~~~----  386 (498)
T COG3104         315 VNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN--K--QPSTPIKFALGLILAGLGFLILLLAGIWFG----  386 (498)
T ss_pred             hcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--C--CCCcchHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence            78886679999999999999999999999999999998873  3  399999999999999999999887753221    


Q ss_pred             hcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcccccc
Q 012167          341 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST  420 (469)
Q Consensus       341 ~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~  420 (469)
                             ++...+|++|++++|+++++||+|++|+++|+++++||++++|.+||.|+++.+.|+.+++.+.+.... +  
T Consensus       387 -------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~--  456 (498)
T COG3104         387 -------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T--  456 (498)
T ss_pred             -------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c--
Confidence                   012468999999999999999999999999999999999999999999999999999999988875331 1  


Q ss_pred             CCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167          421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG  468 (469)
Q Consensus       421 ~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~  468 (469)
                              -+..+..+...+|+.++.+.++..++....+++.++--++
T Consensus       457 --------~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~  496 (498)
T COG3104         457 --------DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG  496 (498)
T ss_pred             --------chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence                    0111123345689999999999999998888887765443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=2.5e-42  Score=370.67  Aligned_cols=360  Identities=23%  Similarity=0.435  Sum_probs=294.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-------Cc
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-------GW  108 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-------g~  108 (469)
                      +...++++++++++|+|++|||++++++|||++++.   ++++++|+|||+++|+|+++++++.+++++++       ||
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence            356688999999999999999999999999987543   36899999999999999999999999998554       69


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcc-ccccc
Q 012167          109 QWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSN  187 (469)
Q Consensus       109 ~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~~  187 (469)
                      +++|++++++|++++++|..++|+|++++|.++++.+..++++.+++++....+             .....+| |++..
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-------------~~~~~~~ld~a~~  227 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-------------EHWPLHWLDYAKD  227 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-------------cccchhHHHHhcc
Confidence            999999999999999999999999988888888888888888888766432100             0001233 43322


Q ss_pred             cCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCC
Q 012167          188 VKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS  267 (469)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g  267 (469)
                      .                              ...+++||+|++++++++++..++||+.++|+.|++..|+.+||+++++
T Consensus       228 ~------------------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g  277 (654)
T TIGR00926       228 K------------------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGG  277 (654)
T ss_pred             c------------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCC
Confidence            1                              1234679999999999999999999999999999999999999999889


Q ss_pred             cccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 012167          268 LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV---------  338 (469)
Q Consensus       268 ~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~---------  338 (469)
                      +++|+++++++|+++++++.|+++..++|.++|++.+   +++++|+++|++++++++++++++|.++++.         
T Consensus       278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~  354 (654)
T TIGR00926       278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANE  354 (654)
T ss_pred             EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Confidence            9999999999999999999999998889998875333   7999999999999999999999999876200         


Q ss_pred             ---------------------------------h-------------hh------------------------------c
Q 012167          339 ---------------------------------A-------------VN------------------------------S  342 (469)
Q Consensus       339 ---------------------------------~-------------~~------------------------------~  342 (469)
                                                       .             ..                              .
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (654)
T TIGR00926       355 IFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELE  434 (654)
T ss_pred             eEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeec
Confidence                                             0             00                              0


Q ss_pred             -C----C------C------------------------------------------------------------------
Q 012167          343 -G----L------V------------------------------------------------------------------  345 (469)
Q Consensus       343 -g----~------~------------------------------------------------------------------  345 (469)
                       +    +      .                                                                  
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (654)
T TIGR00926       435 PKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANT  514 (654)
T ss_pred             CCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeee
Confidence             0    0      0                                                                  


Q ss_pred             ----------------------------CCC--C-----------CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Q 012167          346 ----------------------------NSS--E-----------PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA  384 (469)
Q Consensus       346 ----------------------------~~~--~-----------~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a  384 (469)
                                                  ++.  +           ..++|++||+|||++.++||++.+++++|+.+++|
T Consensus       515 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~  594 (654)
T TIGR00926       515 CDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQA  594 (654)
T ss_pred             cccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhC
Confidence                                        000  0           12378999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167          385 PLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY  462 (469)
Q Consensus       385 P~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~  462 (469)
                      |++||+..+++|.++.++|+.+...+..+-.. .     .+|            ..|.+.+.++++..++|.++++.|
T Consensus       595 p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~-~-----~~~------------~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       595 PPNMKSVLQALWLLTVAIGNLIVVVIAEFENF-S-----VQA------------AEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-h-----HHH------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998766554211 0     122            357778889999999999988765

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=1e-43  Score=361.92  Aligned_cols=351  Identities=32%  Similarity=0.519  Sum_probs=243.2

Q ss_pred             CceeeehhhhhcCCCCCCCCCcccCCCcccCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHH
Q 012167            1 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF   80 (469)
Q Consensus         1 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~   80 (469)
                      +|+++|+++++.++. +               ...+.+.+|+||+++++|+|++|||++++++|||+++++   ++++++
T Consensus        13 ~G~~ll~l~~~~~~~-~---------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~   73 (372)
T PF00854_consen   13 LGHVLLTLSAIPPSL-P---------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSF   73 (372)
T ss_dssp             HHHHH--HHHTSSSC----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHH
T ss_pred             HHHHHhHHHHhcchh-h---------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhh
Confidence            488999999975554 2               135588999999999999999999999999999998742   368999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHhcCCccccc-CCCCCCchh-HHHHHHHHHHhhc
Q 012167           81 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK-IPTGSPLTT-IFKVLTAAIFNTC  158 (469)
Q Consensus        81 f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~-~p~~~~l~~-~~~v~~~a~~~~~  158 (469)
                      |+|||+++|+|+++++++++++++++||+++|++++++|++++++|+.++++|+++ +|.++++.+ ...+...+.+++.
T Consensus        74 F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (372)
T PF00854_consen   74 FNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRK  153 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999987 677888777 4444445555544


Q ss_pred             cCC-CCCc--cccccccCCCCCCCCcc-ccccccCCCCCCCCCchhHHHHhhhccCCCCCCcc-ccCchhhHHHHHHHHH
Q 012167          159 KSK-NSSN--AVTEVHSSPTCSNESRD-EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIV-QCTVKEVEEVKIVVKI  233 (469)
Q Consensus       159 ~~~-~~~~--~~~~~~~~~~~~~~~~~-d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~k~~~~~  233 (469)
                      ... ..+.  ................. .++......+                    ...|. .++++++++.|.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~k~~~~~  213 (372)
T PF00854_consen  154 LAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPE--------------------IFFWALFCQVQRVEELKALIRF  213 (372)
T ss_dssp             CCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC--------------------HHHHTTTSSTTTHHHCCHHHCH
T ss_pred             cccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhh--------------------hhhcccCCccceeeeeeeeeec
Confidence            320 0000  00000000000000000 0000000000                    00011 1345678889999999


Q ss_pred             HHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchH
Q 012167          234 FPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ  312 (469)
Q Consensus       234 l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g-~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~  312 (469)
                      ++++...++|+.++.|.++....|...+|+.+++ +++|+++++++|++++++++|+++++++|+.|+  +++  +++++
T Consensus       214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~--~~~--~~~~~  289 (372)
T PF00854_consen  214 LPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR--GIQ--PSPPQ  289 (372)
T ss_dssp             HHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HH
T ss_pred             cccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--ccc--chhhh
Confidence            9999999999999999988888888889988888 999999999999999999999999999999984  332  89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167          313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  392 (469)
Q Consensus       313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~  392 (469)
                      |+++|++++++++++++.+|.+|.....++|        ..+.+|+++.|++++++|+++++++.+.+++.+|+++++.+
T Consensus       290 k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m  361 (372)
T PF00854_consen  290 KFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSM  361 (372)
T ss_dssp             HHHHH-HHHHHHHHTTTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSS
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHH
Confidence            9999999999999999999987776554433        45669999999999999999999999988888888888888


Q ss_pred             HHHHHHHHHH
Q 012167          393 TSLSWASLAM  402 (469)
Q Consensus       393 ~gl~~l~~~i  402 (469)
                      +|+|+.....
T Consensus       362 ~~~~~~~~~~  371 (372)
T PF00854_consen  362 MGIWFALSAF  371 (372)
T ss_dssp             THHHHHHH--
T ss_pred             HHHHHHHhcc
Confidence            8888876543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2.2e-41  Score=352.33  Aligned_cols=365  Identities=13%  Similarity=0.116  Sum_probs=268.2

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHH
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA  117 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v  117 (469)
                      ..+++++.++++|.|.++|+.+++++|+|+++|+    +|+++|+++|+++|+|++++|++++++.+++||+.+|.++++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            3467788889999999999999999999998764    588999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcccccCC-CCCCchh--HHHHH-----HH-----HHHhhccCCCCCccccccccCCCCCCCCcc--
Q 012167          118 TILLSIPIFLLGSPFYRNKIP-TGSPLTT--IFKVL-----TA-----AIFNTCKSKNSSNAVTEVHSSPTCSNESRD--  182 (469)
Q Consensus       118 ~~~i~~ii~~~~~~~~~~~~p-~~~~l~~--~~~v~-----~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  182 (469)
                      ++++++++++.++|++.+..+ +.+|.++  ..+..     ..     .+......                .....+  
T Consensus       177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~  240 (493)
T PRK15462        177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFW----------------KEWSVYAL  240 (493)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence            999999999888877654211 1223211  00000     00     00000000                000000  


Q ss_pred             ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH-HHc
Q 012167          183 EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATM  261 (469)
Q Consensus       183 d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~  261 (469)
                      -...+..          -.+++. .        .+ .. ...+|+||+..++++++..++||+.|+|.++++.+++ +++
T Consensus       241 ~~~~~~~----------~~~~~~-~--------~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~v  299 (493)
T PRK15462        241 IVATIIG----------LGVLAK-I--------YR-KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFV  299 (493)
T ss_pred             HHHHHHH----------HHHHHH-H--------HH-hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            0000000          000000 0        00 01 1237899999999999999999999999999999887 589


Q ss_pred             ccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012167          262 NTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVN  341 (469)
Q Consensus       262 d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~  341 (469)
                      |++++|+++|++|+|++||++++++.|++.++|.++.||  ++  +++..+|+++|+++.++||+++++....    ...
T Consensus       300 d~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~--~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~  371 (493)
T PRK15462        300 NRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NR--TVRIWGKFALGLGLMSAGFCILTLSARW----SAM  371 (493)
T ss_pred             cchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CC--CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC
Confidence            999999999999999999999999999999999887654  22  3899999999999999999999876521    111


Q ss_pred             cCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHH-HHHHHHHHHhHhhhcccccc
Q 012167          342 SGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL-AMGYYFSTVLVSIVNNITST  420 (469)
Q Consensus       342 ~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~l~~~l~~~~~~~t~~  420 (469)
                              ...+|++|++..|+++|+||++++|.++++++++||++++|++||+|++.. ++|+.+++.+.+.....+..
T Consensus       372 --------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~  443 (493)
T PRK15462        372 --------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD  443 (493)
T ss_pred             --------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence                    124899999999999999999999999999999999999999999999955 89999999998887532100


Q ss_pred             CCCCCCCcCCC---CCchhHHHHHHHHHHHHHHH-H-HHHHHHhhccccccC
Q 012167          421 YRHTPWLFGSN---LNHYHLERFYWLMCILGGLN-F-LHFLFWAARYKYSST  467 (469)
Q Consensus       421 ~~~~~w~~~~~---~n~~~l~~~f~~la~l~l~~-~-l~~~~~~~~~~~~~~  467 (469)
                              ++.   -...++..+|..+++++++. . ++++.+-+.+|.|+|
T Consensus       444 --------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
T PRK15462        444 --------ASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR  487 (493)
T ss_pred             --------ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                    110   01124566788888777665 3 444444455566654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=5.4e-37  Score=322.68  Aligned_cols=367  Identities=13%  Similarity=0.179  Sum_probs=271.2

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHH
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA  117 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v  117 (469)
                      ..++++++++++|.|+++|+..++++|+|+++++    ||+++|+++|+++|+|+++||.++|++.+++||+++|.++++
T Consensus       106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            3467899999999999999999999999987653    567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCccccc--CCCCCCch--hHHHHH------HHHHHhhccCCCCCccccccccCCCCCCCCcc--ccc
Q 012167          118 TILLSIPIFLLGSPFYRNK--IPTGSPLT--TIFKVL------TAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EGN  185 (469)
Q Consensus       118 ~~~i~~ii~~~~~~~~~~~--~p~~~~l~--~~~~v~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~a  185 (469)
                      ++.++++.+..+++++++.  +|++++..  ......      ...+.. ...  .             .....+  ...
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-~~~--~-------------~~~~~~~~~~~  245 (489)
T PRK10207        182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-LMH--N-------------VEVANLVLIVL  245 (489)
T ss_pred             HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-HHh--h-------------hhHHHHHHHHH
Confidence            9988888888887777553  23333321  111000      000000 000  0             000000  000


Q ss_pred             cccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccC
Q 012167          186 SNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTK  264 (469)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~  264 (469)
                      ....          ...|+.+.           .+.++ .++++.+..+.+++..++||++|+|..+.+++|++ ++|++
T Consensus       246 ~~i~----------~~~f~~~~-----------~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~  303 (489)
T PRK10207        246 SIVV----------TIIFFREA-----------FKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHE  303 (489)
T ss_pred             HHHH----------HHHHHHHH-----------hcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccc
Confidence            0000          00111100           01112 45677778888888999999999999989988886 68888


Q ss_pred             CCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 012167          265 LGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGL  344 (469)
Q Consensus       265 ~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~  344 (469)
                      ..|+++|++++|++|++.++++.|+.++++.++.+|  +.+  +++.+|+++|+++.++++++++..+...   ...   
T Consensus       304 ~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r--~~~--~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~---  373 (489)
T PRK10207        304 ILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK--GKD--LSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA---  373 (489)
T ss_pred             ccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC--CCC--CCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---
Confidence            789999999999999999999999999988777655  222  8999999999999999998876654211   101   


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCC
Q 012167          345 VNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT  424 (469)
Q Consensus       345 ~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~  424 (469)
                           ...+|+||+++.|+++|+||.+.+|++++++++.+|++++|.+||+|++..++|+.+|+.+++.+.....     
T Consensus       374 -----~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~-----  443 (489)
T PRK10207        374 -----QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN-----  443 (489)
T ss_pred             -----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----
Confidence                 1247899999999999999999999999999999999999999999999999999999999887753110     


Q ss_pred             CCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167          425 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG  468 (469)
Q Consensus       425 ~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~  468 (469)
                      .. +|.. .++.+..+|..+++.+++.+++++++.|++++.-++
T Consensus       444 ~~-~~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~  485 (489)
T PRK10207        444 IT-DPLE-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINT  485 (489)
T ss_pred             cc-cchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            00 0111 123457789999999999999999888888765443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=1e-36  Score=320.01  Aligned_cols=359  Identities=15%  Similarity=0.187  Sum_probs=267.0

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST  116 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~  116 (469)
                      .+.+++++.++++|.|+++|+..++++|+++++++   .+|+++|+++|++.|+|+++||++++++.+++||+++|.+++
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            45678899999999999999999999999987653   247789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcccccCCCCCCchhH-----H--HHHH----HHHHhhccCCCCCccccccccCCCCCCCCcc-cc
Q 012167          117 ATILLSIPIFLLGSPFYRNKIPTGSPLTTI-----F--KVLT----AAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EG  184 (469)
Q Consensus       117 v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~-----~--~v~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~  184 (469)
                      +.++++++++++.++.+++.++++++.++.     .  ..+.    ..++..... ...         ...+....- .-
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~  248 (475)
T TIGR00924       179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLM-HHV---------VIANILLMTVTL  248 (475)
T ss_pred             HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-hcc---------HHHHHHHHHHHH
Confidence            999888888888887776544333332211     0  0000    000100000 000         000000000 00


Q ss_pred             ccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH-HHccc
Q 012167          185 NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNT  263 (469)
Q Consensus       185 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~d~  263 (469)
                      +..+             ++.....     .+    +.++ +++++..+++++++..++||++|+|+.+++.++. +++|+
T Consensus       249 ~~~~-------------~~~~~~~-----~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~  305 (475)
T TIGR00924       249 AVII-------------FFFRLAF-----KP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHH  305 (475)
T ss_pred             HHHH-------------HHHHHHH-----hc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence            0000             0000000     00    1122 3455666789999999999999999999887654 57999


Q ss_pred             CCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 012167          264 KLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSG  343 (469)
Q Consensus       264 ~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g  343 (469)
                      +++++++|+++++++|++.+++++|++++++.++.||  ++  +++...|+++|+++.+++++.++++..    .++.  
T Consensus       306 ~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~--~~--~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~--  375 (475)
T TIGR00924       306 EMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK--GK--DPTTPLKFTLGMLFCGASFLTFAASIW----FADA--  375 (475)
T ss_pred             cccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC--CC--CCCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC--
Confidence            9889999999999999999999999999887777665  22  278899999999999999999887631    1111  


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCC
Q 012167          344 LVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRH  423 (469)
Q Consensus       344 ~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~  423 (469)
                            ..++|+||++++|+++|+||++++|++++++++++|+++||+++|+|.+..++|+.+++.+........     
T Consensus       376 ------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-----  444 (475)
T TIGR00924       376 ------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-----  444 (475)
T ss_pred             ------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence                  135899999999999999999999999999999999999999999999999999999999988764311     


Q ss_pred             CCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167          424 TPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  464 (469)
Q Consensus       424 ~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~  464 (469)
                       +|           ..+|..+++++++.+++++++.|++++
T Consensus       445 -~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       445 -GV-----------TGVFGKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             -ch-----------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             12           447888888888888888888887764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.9e-35  Score=312.29  Aligned_cols=361  Identities=14%  Similarity=0.208  Sum_probs=264.6

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST  116 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~  116 (469)
                      .+.+++++.++++|.|.++|+..++++++|+++++    +++++++++|+++|+|+++||.+++++.+++||+++|.+++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            45677889999999999999999999999987643    46678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCccccc--CCCCCCchh--HH----HHHHHHH-HhhccCCCCCccccccccCCCCCCCCcc-cccc
Q 012167          117 ATILLSIPIFLLGSPFYRNK--IPTGSPLTT--IF----KVLTAAI-FNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNS  186 (469)
Q Consensus       117 v~~~i~~ii~~~~~~~~~~~--~p~~~~l~~--~~----~v~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~  186 (469)
                      +.++++++.+++.++.+++.  +|+++|...  ..    .+..... ...... ++                 .. ....
T Consensus       188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~  249 (500)
T PRK09584        188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLH-NQ-----------------EIARMAL  249 (500)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHh-cc-----------------hHHHHHH
Confidence            99999888877766655543  233333221  10    1111110 010000 00                 00 0000


Q ss_pred             ccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccCC
Q 012167          187 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKL  265 (469)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~~  265 (469)
                      ......      .-..+..           ..+..++ +|+++.+..+++++..++||++|.|+++.+..|+. ++|+++
T Consensus       250 ~~~~~~------~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~  311 (500)
T PRK09584        250 GVVALG------IVVIFGK-----------EAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSI  311 (500)
T ss_pred             HHHHHH------HHHHHHH-----------HHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccc
Confidence            000000      0000000           0011122 56777778888889999999999999999998875 578888


Q ss_pred             CCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 012167          266 GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV  345 (469)
Q Consensus       266 ~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~  345 (469)
                      .|+.+|+++++++|++.++++.|++++++.++.+|       +++.+|+++|+++.+++++++++...    .+++    
T Consensus       312 ~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~----  376 (500)
T PRK09584        312 LGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAK----FAND----  376 (500)
T ss_pred             cceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHH----hcCC----
Confidence            89999999999999999999999999987666544       57889999999999999999887642    1111    


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCC
Q 012167          346 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP  425 (469)
Q Consensus       346 ~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~  425 (469)
                          ...+|++|++++|+++|+||++++|++++++++++|+++||++||+|+++.++|+.+++.+.+.+..-..      
T Consensus       377 ----~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~------  446 (500)
T PRK09584        377 ----AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN------  446 (500)
T ss_pred             ----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------
Confidence                2368999999999999999999999999999999999999999999999999999999998876542000      


Q ss_pred             CCcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167          426 WLFGSN-LNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  464 (469)
Q Consensus       426 w~~~~~-~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~  464 (469)
                      -  .|. ...+.+..+|..+++++++.+++++++.++.++
T Consensus       447 ~--~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        447 V--TDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             c--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  011 111235678888898888888888887777765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.51  E-value=4.1e-12  Score=130.84  Aligned_cols=294  Identities=13%  Similarity=0.106  Sum_probs=174.9

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++.+.+.+++.|.+.|+..+++.|.++++      +|.+++++.+...++|..+||.+++++. ++||+..|.+.
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~  170 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG  170 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            4677888889999999999999999999988754      4678999999999999999999999998 68999999998


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..++..++.....+..   +++ +...+.        +                           +            
T Consensus       171 ~~~~~~~~i~~~~~~~~~---~~~-~~~~~~--------~---------------------------~------------  199 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPAY---KLS-TVRTPV--------R---------------------------E------------  199 (400)
T ss_pred             HHHHHHHHHHHHHhCCcc---ccc-ccchhh--------H---------------------------H------------
Confidence            877766554433321110   000 000000        0                           0            


Q ss_pred             CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167          196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL  275 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l  275 (469)
                                         .++    +-..+ +++...   .+....++..+.|.....+...++.    ++.....+++
T Consensus       200 -------------------~~~----~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~g~l  248 (400)
T PRK11646        200 -------------------GMT----RVLRD-KRFVTY---VLTLTGYYMLAVQVMLMLPIMVNDI----AGSPSAVKWM  248 (400)
T ss_pred             -------------------HHH----HHHcC-chHHHH---HHHHHHHHHHHHHHHHhhhhhHHhh----cCCchHHHHH
Confidence                               000    00011 111111   1112223333333322222221111    1100011223


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  355 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~  355 (469)
                      .+++.+..+.......++    ..|+      .+..+++..|.++.++++...+...                     +.
T Consensus       249 ~~~~~~~~~~~~~~~~~~----~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~  297 (400)
T PRK11646        249 YAIEACLSLTLLYPIARW----SEKR------FRLEHRLMAGLLIMSLSMFPIGMVS---------------------NL  297 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHh------cchhHHHHHHHHHHHHHHHHHHHhh---------------------hH
Confidence            333333333222222222    2221      2334567778777777766554431                     23


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY  435 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~  435 (469)
                      ++.+...++.++++.+..|.....+.+.+|++.+|.++|++.+..++|..+|+.+.+.+.+.++..             +
T Consensus       298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~-------------~  364 (400)
T PRK11646        298 QQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL-------------N  364 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-------------C
Confidence            445555677889999999999999999999999999999999999999999999999987643210             0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167          436 HLERFYWLMCILGGLNFLHFLFWAARY  462 (469)
Q Consensus       436 ~l~~~f~~la~l~l~~~l~~~~~~~~~  462 (469)
                      .....|++.++++++..+.+....|+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (400)
T PRK11646        365 QPELPWMMLGIIGLITLLALYWQFSQK  391 (400)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            113356666666666666555444433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.48  E-value=1.2e-11  Score=126.68  Aligned_cols=283  Identities=11%  Similarity=0.069  Sum_probs=170.0

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.+++.+.+.|...+++.|+++++      +|.++++++..+.++|.+++|.+++++.+++||++.|.+.
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~  169 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI  169 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence            4677888889999999999999999999999864      4678899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..++..+......++    +|++++- . .       +                           +            
T Consensus       170 ~~~~~l~~~~~~~~~~~----~~~~~~~-~-~-------~---------------------------~------------  197 (390)
T PRK03545        170 GGGALITLLLLIKLLPL----LPSEHSG-S-L-------K---------------------------S------------  197 (390)
T ss_pred             HHHHHHHHHHHHHhCCC----CCCCCcc-h-H-------H---------------------------H------------
Confidence            87766555443322111    1110000 0 0       0                           0            


Q ss_pred             CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCC---
Q 012167          196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP---  272 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~---  272 (469)
                                               ..++-..+.+...   +.........+....+....+..  + ..+   .++   
T Consensus       198 -------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~--~-~~g---~s~~~~  243 (390)
T PRK03545        198 -------------------------LPLLFRRPALVSL---YLLTVVVVTAHFTAYSYIEPFVQ--Q-VAG---LSENFA  243 (390)
T ss_pred             -------------------------HHHHHhCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--H-hcC---CCccHH
Confidence                                     0000000111111   11111111111111111111111  1 111   122   


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+.....+..++..++.+++    .+|       .. .+++.++..+.++++......                    .
T Consensus       244 ~~~~~~~~~~~~~g~~~~g~l----~dr-------~~-~~~~~~~~~~~~~~~~~l~~~--------------------~  291 (390)
T PRK03545        244 TLLLLLFGGAGIIGSVLFSRL----GNR-------HP-SGFLLIAIALLLVCLLLLLPA--------------------A  291 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhc-------cc-hhHHHHHHHHHHHHHHHHHHH--------------------h
Confidence            222333333434444444443    233       11 234556666555554433221                    1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.+++.....+...+.+.+.+|+ .++.++|++.....+|..+|+.+.+.+.+..              
T Consensus       292 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~--------------  356 (390)
T PRK03545        292 NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHL--------------  356 (390)
T ss_pred             chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence            2455666778899999988888888888888875 7899999999989999999999998876421              


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                         ++...|+..+++.++++++++...|
T Consensus       357 ---g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        357 ---GLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             ---ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence               2345677778888777777666554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.47  E-value=2.4e-11  Score=124.79  Aligned_cols=302  Identities=12%  Similarity=0.048  Sum_probs=170.5

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++...+.+++.|...|...+.+.|.++++      +|.+++++++.+.++|.++++.+++.+.+..+|+..|.+.
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  175 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG  175 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence            4677888899999999999999999999999754      4678899999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..++..++.....+    ++|+...             ++. .  .             .     ++           
T Consensus       176 ~~~~~~~~~~~~~~l~----~~~~~~~-------------~~~-~--~-------------~-----~~-----------  206 (406)
T PRK11551        176 GVGPLLLVPLLMRWLP----ESRAFAQ-------------AAG-A--G-------------K-----QR-----------  206 (406)
T ss_pred             HHHHHHHHHHHHHhCC----CChhHHh-------------ccC-c--c-------------h-----hh-----------
Confidence            7766555443332111    1111000             000 0  0             0     00           


Q ss_pred             CCchhHHHHhhhccCCCCCCcc-ccCchhhHHHHHHHHHHH-HHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCC
Q 012167          196 KPTEDIKFLNRALRNNPAYPIV-QCTVKEVEEVKIVVKIFP-IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA  273 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~k~~~~~l~-l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~  273 (469)
                                       ...++ .++.   ...++...+.. .+.....++....+    .+....+  ....  .-..+
T Consensus       207 -----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~--~g~s--~~~~~  258 (406)
T PRK11551        207 -----------------APVLRALFGE---GRATATLLLWISYFFTLIVLYFLLNW----LPSLLVG--QGLS--RSQAG  258 (406)
T ss_pred             -----------------hhhHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh--CCCC--hhhhh
Confidence                             00000 0000   00111111111 11111222221111    1111111  1100  00123


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      .+.....+..++..++..++.+++.+|           +.+..+.+..+++++.....                     .
T Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~  306 (406)
T PRK11551        259 LVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAA---------------------P  306 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhc---------------------C
Confidence            333444444455555555554433221           22333444444443332221                     1


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      +.+++....++.+++.....+...+++.+..|++.||..+|+......+|..+++.+.+.+.+..+              
T Consensus       307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~--------------  372 (406)
T PRK11551        307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR--------------  372 (406)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--------------
Confidence            344555566778887777778888999999999999999999999999999999999888764211              


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG  468 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~  468 (469)
                        ....+++..+...++.+++.+...++-+.++++
T Consensus       373 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (406)
T PRK11551        373 --STVGVIGASIPVILVAALAALLLVSRPSRADPC  405 (406)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHHhcchhccCCC
Confidence              113345555555555555555555555555544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.47  E-value=2e-11  Score=126.04  Aligned_cols=295  Identities=10%  Similarity=-0.017  Sum_probs=170.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++..++.+++.|...|+..+++.|.++++      ++.++.++++.+.++|..+|+.+++++.+..+|++.|.+.
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            3566777788888888888899999999888753      3567888899999999999999999999888999999988


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..+++.+......    +.+|+..+..+                 +                  ..        +   
T Consensus       183 ~~~~~~~~~~~~~l~----~~~~~~~~~~~-----------------~------------------~~--------~---  212 (417)
T PRK10489        183 AAGTFITLLPLLRLP----ALPPPPQPREH-----------------P------------------LR--------S---  212 (417)
T ss_pred             HHHHHHHHHHHHhCC----CCCCCCccccc-----------------c------------------hH--------H---
Confidence            877766554433211    11111000000                 0                  00        0   


Q ss_pred             CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccC---C
Q 012167          196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP---P  272 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip---~  272 (469)
                           .           ...+     ..+...+. ++.  +++..... .......+.++....+   ..+   .+   .
T Consensus       213 -----~-----------~~~~-----~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~p~~~~~---~~g---~~~~~~  261 (417)
T PRK10489        213 -----L-----------LAGF-----RFLLASPV-VGG--IALLGGLL-TMASAVRVLYPALADE---VWQ---MGAAQI  261 (417)
T ss_pred             -----H-----------HHHH-----HHHHcChH-HHH--HHHHHHHH-HHHHhHHHhhHHHHHh---ccC---CChhHh
Confidence                 0           0000     00000011 111  11111111 1111222222222111   111   12   2


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+..++..++.+++    .+|       .+..+-+..+.++.+++++..++.                     
T Consensus       262 g~~~~~~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~---------------------  309 (417)
T PRK10489        262 GLLYAAVPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGLM---------------------  309 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHcc---------------------
Confidence            333344444444444444433    222       122233556666666665544322                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+++......++.+++.....+....++.+..|++.||.++|++.....+|..+|+.+.+.+.+..+             
T Consensus       310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-------------  376 (417)
T PRK10489        310 PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-------------  376 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-------------
Confidence            1344455667788888888888888999999999999999999999999999999999988765221             


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS  466 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~  466 (469)
                          ....++..+++.++..++.....++++.++
T Consensus       377 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (417)
T PRK10489        377 ----PVASASASGFGLLIIGVLLLLVLGELRRFR  406 (417)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHhcccccccc
Confidence                123455556555555555555556655444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=8.2e-12  Score=128.05  Aligned_cols=302  Identities=13%  Similarity=0.106  Sum_probs=173.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.++++..+.+++.+ +.|...+.+.|+++++      +|.++.++++.+.++|.++++.+++++.+..+|+..|.+.
T Consensus       106 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  178 (408)
T PRK09874        106 NIWQFLILRALLGLLGG-FVPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT  178 (408)
T ss_pred             hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            36677788888888765 4577778888887643      3567888899999999999999999999989999999998


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..++..+......+.-  .+++.++-..-.       +                           +            
T Consensus       179 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~---------------------------~------------  210 (408)
T PRK09874        179 ASVLFLCFLVTLFCIREN--FQPVSKKEMLHM-------R---------------------------E------------  210 (408)
T ss_pred             HHHHHHHHHHHHHHhccC--cccccchhhhHH-------H---------------------------H------------
Confidence            887766655433211110  001100000000       0                           0            


Q ss_pred             CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167          196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL  275 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l  275 (469)
                                         .++     ..++.+ ..  +.+......+........+.+..+..+...+......-.+.+
T Consensus       211 -------------------~~~-----~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  263 (408)
T PRK09874        211 -------------------VVT-----SLKNPK-LV--LSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMI  263 (408)
T ss_pred             -------------------HHH-----hCcCCc-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence                               000     000011 11  111111222222222222222222111111100000001122


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  355 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~  355 (469)
                      ..+..+..++..|+.+++.+    |.       ...+-+.+++++.+++++..+..                     .+.
T Consensus       264 ~~~~~l~~~~~~~~~g~l~d----r~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~  311 (408)
T PRK09874        264 ASVPGVAALLSAPRLGKLGD----RI-------GPEKILITALIFSVLLLIPMSFV---------------------QTP  311 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cc-------ccchhHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence            22333444445555555433    31       21223445555555544443322                     124


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY  435 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~  435 (469)
                      +++....++.++++....|.....+.+.+|++.+|.++|++.....+|..+|+.+++.+.+..                 
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-----------------  374 (408)
T PRK09874        312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-----------------  374 (408)
T ss_pred             HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-----------------
Confidence            445566688899999999999999999999999999999999999999999999998876421                 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167          436 HLERFYWLMCILGGLNFLHFLFWAARYKYSSTG  468 (469)
Q Consensus       436 ~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~  468 (469)
                      .+...|.+.+++++++.+..+...||.+.++..
T Consensus       375 g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~  407 (408)
T PRK09874        375 GFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQVS  407 (408)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            134567888888888877776666666555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=4.1e-11  Score=120.90  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.++|.|...|...+++.|.++++      +|.+.++++..+.++|.++++.+++++.++.+|++.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            4778889999999999999999999999998754      4678899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHH
Q 012167          116 TATILLSIPIFL  127 (469)
Q Consensus       116 ~v~~~i~~ii~~  127 (469)
                      ++..++..+...
T Consensus       155 ~~~~~~~~~~~~  166 (399)
T TIGR00893       155 GVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHhh
Confidence            877665554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.42  E-value=5.9e-11  Score=121.33  Aligned_cols=278  Identities=13%  Similarity=0.044  Sum_probs=170.1

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++...+.+.+.+...|...++..+ +.+       ++...++....+.++|..++|.+++++.+++||+..|.+
T Consensus        92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~-------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~  163 (382)
T TIGR00902        92 HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQK-------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI  163 (382)
T ss_pred             hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HHH-------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            347778888888888888888888777543 221       345678999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167          115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS  194 (469)
Q Consensus       115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~  194 (469)
                      .++...+.++.+.. .+.   .+|+++. .               .  .                            +  
T Consensus       164 ~~~~~~~~~~~~~~-~~~---~~~~~~~-~---------------~--~----------------------------~--  191 (382)
T TIGR00902       164 LTAGLAFMLIGFLI-KPT---IPPKDAI-P---------------E--D----------------------------E--  191 (382)
T ss_pred             HHHHHHHHHHHHHc-CCC---CCCCccc-c---------------c--c----------------------------c--
Confidence            66554333332221 110   0111000 0               0  0                            0  


Q ss_pred             CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCC--
Q 012167          195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP--  272 (469)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~--  272 (469)
                                        ....     ++..+..+-.++..+.+...+++..+.+..+..+.+-++.    +   .++  
T Consensus       192 ------------------~~~~-----~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~----g---~s~~~  241 (382)
T TIGR00902       192 ------------------SQGD-----SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAA----G---ISASA  241 (382)
T ss_pred             ------------------cccc-----hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----C---CCHhH
Confidence                              0000     0000000001122223333444455555544433322221    2   222  


Q ss_pred             -CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          273 -ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       273 -~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                       +.+..+..+..++..++.+    ++.+|       .++.+-+.+|.++.++.++..++.                    
T Consensus       242 ~g~l~~~~~~~~i~~~~~~~----~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~--------------------  290 (382)
T TIGR00902       242 TGLLWGIGVLAEIIIFAFSN----KLFQN-------CSARDLLLISAIACVGRWAIIGAI--------------------  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhH----HHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH--------------------
Confidence             2333334444444433333    33444       455555778888888888776654                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHH-HHHHHHHHHHHHhHhhhccccccCCCCCCCcCC
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS  430 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~  430 (469)
                       .++++++...+++++...+..+....++.+. |++.++..+|++. +..++|..+++.+++.+.+..            
T Consensus       291 -~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~------------  356 (382)
T TIGR00902       291 -EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL------------  356 (382)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence             2456666667999999999999999999998 9999999999986 567899999999999887521            


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHH
Q 012167          431 NLNHYHLERFYWLMCILGGLNFL  453 (469)
Q Consensus       431 ~~n~~~l~~~f~~la~l~l~~~l  453 (469)
                          +  ...|+..+++++++.+
T Consensus       357 ----g--~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       357 ----G--AGTFVFMAIIAAAAFF  373 (382)
T ss_pred             ----c--HHHHHHHHHHHHHHHH
Confidence                1  2357777887776543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.42  E-value=3.4e-11  Score=120.78  Aligned_cols=268  Identities=9%  Similarity=0.034  Sum_probs=162.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.+++.+...|...+++.|.++++      +|.+.++++..+.++|.++++.+++++.+..||+..|.+.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            5788899999999999999999999999999864      4778999999999999999999999999989999999988


Q ss_pred             HHHHHHHHHHHHhcCCcccccCC-CCCCch-hHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIP-TGSPLT-TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP  193 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p-~~~~l~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~  193 (469)
                      ++..+++.+.....+..  ++++ ++++.. +..        +                          +          
T Consensus       165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~--------------------------~----------  198 (365)
T TIGR00900       165 AVGFAISALLIVSVRIP--ELAASEIQALSNAVL--------R--------------------------D----------  198 (365)
T ss_pred             HHHHHHHHHHHHhcccc--cCCCccccccchhHH--------H--------------------------H----------
Confidence            87776665443332110  0000 000000 000        0                          0          


Q ss_pred             CCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcch-hHHHHHHHH-cccCCCCcccC
Q 012167          194 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS-TFSVQQAAT-MNTKLGSLKVP  271 (469)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~-s~~~~qa~~-~d~~~~g~~ip  271 (469)
                                           .     .+..++.++-..+..+.....+++..+.... +..+....+ .+.+    ...
T Consensus       199 ---------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  248 (365)
T TIGR00900       199 ---------------------T-----REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRG----STH  248 (365)
T ss_pred             ---------------------H-----HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc----hHH
Confidence                                 0     0000000000011122222222222222221 112222111 1111    011


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+.+.....+..++..++..++    .+|.       ...+-+..+.++.++++....+..                   
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------------------  298 (365)
T TIGR00900       249 YGWVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP-------------------  298 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc-------------------
Confidence            2333344444444444454433    2331       112234445555666555544331                   


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      + +.++.+...++.+++.....+...+++.+..|++.||.++|++.....+|..+++.+++.+.+
T Consensus       299 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       299 P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 355667778999999999999999999999999999999999999999999999998887653

>PRK10054 putative transporter; Provisional

Probab=99.41  E-value=1.6e-11  Score=126.14  Aligned_cols=82  Identities=9%  Similarity=0.089  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST  116 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~  116 (469)
                      .+.+++...+.+.+.+.+.|...+...|.++++      +|.+++++.|...|+|.+++|.+++++.+ .+|+..|.+.+
T Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            445555566667777778888888888888753      46789999999999999999999999885 79999999988


Q ss_pred             HHHHHHHHH
Q 012167          117 ATILLSIPI  125 (469)
Q Consensus       117 v~~~i~~ii  125 (469)
                      +..+++++.
T Consensus       169 ~~~~i~~i~  177 (395)
T PRK10054        169 ICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHH
Confidence            877776544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=1.6e-10  Score=118.43  Aligned_cols=280  Identities=11%  Similarity=0.056  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +...+++.+.+.++|.+...|+..+.+.|+++++      +|.++++++..+.++|..+|+.+++++.+.+||+..|.+.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  184 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI  184 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4567888889999999999999999999998754      3567888899999999999999999999999999988876


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..++..+   +.++     .|+.++-.                  .                   +            
T Consensus       185 ~~~~~~~~~---~~~~-----~~~~~~~~------------------~-------------------~------------  207 (399)
T PRK05122        185 MLLALLGLL---LARP-----RPAVPPVK------------------G-------------------E------------  207 (399)
T ss_pred             HHHHHHHHH---HHhc-----CCCCCCCC------------------c-------------------c------------
Confidence            654433222   2111     11110000                  0                   0            


Q ss_pred             CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167          196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL  275 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l  275 (469)
                                       ..++       .+..|+.......+   .++...+....+.......  +.+   .. ..+..
T Consensus       208 -----------------~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~  254 (399)
T PRK05122        208 -----------------RLPF-------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--ARG---WD-GAALA  254 (399)
T ss_pred             -----------------chhH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hcc---cc-cchHH
Confidence                             0000       01112211111111   1111122222222222111  111   10 11222


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  355 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~  355 (469)
                      .....+..++..++.+++    .+|       .+..+.+..+.++.++++...+..                     .+.
T Consensus       255 ~~~~~~~~~~~~~~~g~l----~~r-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~  302 (399)
T PRK05122        255 LTLFGVAFVGARLLFGNL----INR-------LGGLRVAIVSLLVEILGLLLLWLA---------------------PSP  302 (399)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHH-------hccHHHHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence            233333444444444444    333       222334556667667666555443                     134


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY  435 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~  435 (469)
                      ++++...++.+++.....|.....+.+..|++.||.++|++.....+|..+++.+.+.+.+..                 
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-----------------  365 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-----------------  365 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence            456667889999998888888888889999999999999999999999988888877765421                 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          436 HLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       436 ~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                      ++...|++.++++++..++.+.+.+
T Consensus       366 g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        366 GYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1345667777777766655554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.39  E-value=2.5e-10  Score=117.39  Aligned_cols=85  Identities=12%  Similarity=0.001  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++...+.+++.+...|...+.+.|.++++      ++.+..++.+...++|..++|.+++++.++.+|+..|.+.
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            3567788888899999988888889999998754      3456778888888899999999999999989999999988


Q ss_pred             HHHHHHHHHHH
Q 012167          116 TATILLSIPIF  126 (469)
Q Consensus       116 ~v~~~i~~ii~  126 (469)
                      ++..+++.+..
T Consensus       174 ~~~~~~~~~~~  184 (406)
T PRK15402        174 AALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHH
Confidence            87776665543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.38  E-value=1.1e-10  Score=119.24  Aligned_cols=262  Identities=13%  Similarity=0.042  Sum_probs=154.4

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++.+.+.+++.+...|...++..|.. +       ++.+.++......++|..+||.+++++.+++||+..|.+
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-~-------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-K-------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH-h-------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            34677778888889999999998888877752 1       244567778888899999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167          115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS  194 (469)
Q Consensus       115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~  194 (469)
                      .++..++..+.... .+   +.+|++++-            +   +  .              .    +        .  
T Consensus       164 ~~~~~~~~~~~~~~-~~---~~~~~~~~~------------~---~--~--------------~----~--------~--  194 (382)
T PRK11128        164 LTAGVASMLLGQLL-RP---TIMPQGESR------------Q---Q--E--------------S----A--------G--  194 (382)
T ss_pred             HHHHHHHHHHHHHc-cC---CCCCccccc------------c---c--c--------------c----c--------c--
Confidence            77655544433222 11   111111000            0   0  0              0    0        0  


Q ss_pred             CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCC
Q 012167          195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPAS  274 (469)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~  274 (469)
                                        ...+     .+.-..|++   +.+.+...+.+..+.+..+......++...+    +-..+.
T Consensus       195 ------------------~~~~-----~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s----~~~~g~  244 (382)
T PRK11128        195 ------------------WPAW-----KALLKEPTV---WRFLLCVSLLQGSHAAYYGFSAIYWQAAGYS----ASTIGY  244 (382)
T ss_pred             ------------------cchH-----HHHHcChhH---HHHHHHHHHHHHHhHhHHHHHHHHHHHCCCC----HhHHHH
Confidence                              0000     000001122   2222222333333333333333222221111    011233


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167          275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  354 (469)
Q Consensus       275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s  354 (469)
                      +..++.+..++...+.+++    .+|       .+..+.+.+++++.+++++..+..                     .+
T Consensus       245 ~~~~~~~~~~~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~  292 (382)
T PRK11128        245 LWSLGVVAEVLIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGST---------------------TA  292 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhh---------------------hh
Confidence            4445555555554555544    344       333445777777777776655443                     24


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHH-HHHHHHHHHHHHhHhhhcc
Q 012167          355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+++++..+++++++.+..+....++.++. ++.++.++++.. +..++|..+++.+++.+.+
T Consensus       293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        293 LPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777889999999999999999998875 555688899886 5567888888888888765

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.35  E-value=1.2e-10  Score=115.62  Aligned_cols=263  Identities=18%  Similarity=0.228  Sum_probs=180.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.++++..+.+++.+...|...++..|.++++      +|...+++.+.+.++|..+++.+++++.++.+|+..|.+.
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  159 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL  159 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4677888999999999999999999999999874      3678899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..+++.+...+..             +..                                                 
T Consensus       160 ~~~~~~~~~~~~~~~-------------~~~-------------------------------------------------  177 (352)
T cd06174         160 AILGLLLALLLLFLL-------------RLL-------------------------------------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHH-------------HHH-------------------------------------------------
Confidence            888777665543311             000                                                 


Q ss_pred             CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167          196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL  275 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l  275 (469)
                                                            ..+.+....+...+............+. .+..  +...+.+
T Consensus       178 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~  216 (352)
T cd06174         178 --------------------------------------LLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLS--AAEAGLL  216 (352)
T ss_pred             --------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC--HHHHHHH
Confidence                                                  0000111111111111111111111110 0100  1123445


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ-RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  354 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~-ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s  354 (469)
                      .....+..++..++..++.++..+|           + .+.++.++..++++.....+                     +
T Consensus       217 ~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~---------------------~  264 (352)
T cd06174         217 LSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLALAP---------------------S  264 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHhc---------------------c
Confidence            5666666667777776665443322           2 46677777777777665431                     3


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167          355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH  434 (469)
Q Consensus       355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~  434 (469)
                      .++.....++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+..      +|        
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~~--------  330 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------GY--------  330 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Cc--------
Confidence            5677888999999999999999999999999999999999999999999999999998876411      12        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 012167          435 YHLERFYWLMCILGGLNFLHFL  456 (469)
Q Consensus       435 ~~l~~~f~~la~l~l~~~l~~~  456 (469)
                         ...|.+.++++++..+++.
T Consensus       331 ---~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         331 ---GGVFLILAALALLAALLLL  349 (352)
T ss_pred             ---chHHHHHHHHHHHHHHHhe
Confidence               3456667777766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=3.1e-10  Score=116.08  Aligned_cols=278  Identities=10%  Similarity=0.046  Sum_probs=165.1

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++++.+.++|.+...|...+.+.|.++++      +|.++++++..+.++|.++++.+++++.+.+||+..+.+
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            34677889999999999999999889999988754      367789999999999999999999999998999887765


Q ss_pred             HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167          115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS  194 (469)
Q Consensus       115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~  194 (469)
                      ..+..++.   +.+.+ +.++.+++++.                 +                                  
T Consensus       184 ~~~~~~~~---~~~~~-~~~~~~~~~~~-----------------~----------------------------------  208 (392)
T PRK12382        184 TMVLPLLA---WAFNG-TVRKVPAHAGE-----------------R----------------------------------  208 (392)
T ss_pred             HHHHHHHH---HHHHH-hccCCCCCccc-----------------C----------------------------------
Confidence            44433222   22211 11110010000                 0                                  


Q ss_pred             CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHH-HHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCC
Q 012167          195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKI-FPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA  273 (469)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~-l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~  273 (469)
                                        . ..       .+..|.+.+. +.+.+....+.....    .......  +..   +. +.+
T Consensus       209 ------------------~-~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~--~~~---~~-~~~  252 (392)
T PRK12382        209 ------------------P-SL-------WSVVGLIWKPGLGLALQGVGFAVIGT----FVSLYFA--SKG---WA-MAG  252 (392)
T ss_pred             ------------------c-hH-------HHHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHH--hcC---Cc-hhH
Confidence                              0 00       0001111110 001111111111111    1111111  111   10 112


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      .......+..++..++.+++.    +|.       ...+.+.++.++.+++++...+.                     .
T Consensus       253 ~~~~~~~~~~~~~~~~~g~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~  300 (392)
T PRK12382        253 FTLTAFGGAFVLMRVLFGWMP----DRF-------GGVKVAIVSLLVETVGLLLLWLA---------------------P  300 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----Hhc-------CCCeehHHHHHHHHHHHHHHHHc---------------------c
Confidence            222233333444455555543    332       22233556777777776654432                     1


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      +.++.+...++.++++....|.....+.+.+|++.||.++|+++....+|+.+++.+.+.+.+..      +|       
T Consensus       301 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g~-------  367 (392)
T PRK12382        301 TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------GY-------  367 (392)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------Cc-------
Confidence            34455667788999998888888888899999999999999999999999999999988876521      12       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                          ...|.+.+++.++..++.+..
T Consensus       368 ----~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        368 ----PSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHhh
Confidence                446777777777766655544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.32  E-value=4.3e-10  Score=117.95  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-CcchhHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-g~~~~F~i~  115 (469)
                      ...+++..++.+++.|...|...+.+.++++++      +|.++.++++.+.++|.++++.+++++.+.. ||+..|.+.
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~  204 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF  204 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence            566888899999999999999999999999864      4678999999999999999999999999884 999999998


Q ss_pred             HHHHHHHHHH
Q 012167          116 TATILLSIPI  125 (469)
Q Consensus       116 ~v~~~i~~ii  125 (469)
                      ++..++..++
T Consensus       205 ~~~~~~~~~~  214 (465)
T TIGR00894       205 GIVGCAWSLL  214 (465)
T ss_pred             hHHHHHHHHH
Confidence            8876554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.31  E-value=4.7e-11  Score=119.22  Aligned_cols=267  Identities=14%  Similarity=0.196  Sum_probs=159.5

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST  116 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~  116 (469)
                      .+.++++..+.++|.+...|...+++.|.++++      +|.+.+++.+.+.++|.++++.+++++.++++|++.|.+.+
T Consensus        85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~  158 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA  158 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred             HHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence            458899999999999999999999999999985      36789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCCC
Q 012167          117 ATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK  196 (469)
Q Consensus       117 v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~  196 (469)
                      +..++..++.....+   +++++....                .  +             .+    ++..          
T Consensus       159 ~~~~~~~il~~~~~~---~~~~~~~~~----------------~--~-------------~~----~~~~----------  190 (352)
T PF07690_consen  159 ILSLIAAILFILFLP---EPPPPRERE----------------S--P-------------KE----SESK----------  190 (352)
T ss_dssp             HHHHHHHHHHHCCC------STTTT------------------S--S-------------TT----TT------------
T ss_pred             chhhhhhhhHhhhhh---hcccccccc----------------c--c-------------cc----cccc----------
Confidence            988887764333221   111110000                0  0             00    0000          


Q ss_pred             CchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHH-HHHcccCCCCcccCCCCC
Q 012167          197 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ-AATMNTKLGSLKVPPASL  275 (469)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~q-a~~~d~~~~g~~ip~~~l  275 (469)
                                     ...+++. ..+.....+.+.   .+++....+...+....+..+.. .+..+.+  +. ...+.+
T Consensus       191 ---------------~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~  248 (352)
T PF07690_consen  191 ---------------KPKPLKP-GFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS--GP-SQAGLL  248 (352)
T ss_dssp             ---------------HHHCCCH--CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC--TH-HHHHHH
T ss_pred             ---------------ccccccc-ccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhccCCC--HH-HHHHHH
Confidence                           0000000 000111111111   12222233333333332222221 1111111  00 111223


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  355 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~  355 (469)
                      ..+..+..++..++.+++.    +|       .+..++..+......++.+...+..                  ...+.
T Consensus       249 ~~~~~~~~~~~~~~~~~l~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~  299 (352)
T PF07690_consen  249 FSIFGIVGIIGSLLAGRLS----DR-------FGRRRRLLIAILLLILGALGLLLLP------------------FSSSP  299 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HH-------TTCHHHHHHHHHHHHHHHHHHCCSH------------------HHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----HH-------cCcHHHHHHHHHHHHHHHHHHHHHH------------------HhhhH
Confidence            3444444444555555554    33       2223344444444444443333221                  01245


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHH
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFST  408 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~  408 (469)
                      .|.+...++.+++..+..+...+++.+.+|++.+|.++|+.....++|..++|
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            67777889999999999999999999999999999999999999999999876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.31  E-value=1.7e-10  Score=134.18  Aligned_cols=287  Identities=9%  Similarity=-0.047  Sum_probs=164.3

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++++++.+++.+.+.|...+++.|.++++      ++..+.+++.++.++|.++||.+++++.+..||+..|.+
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            35788999999999999999999999999999875      467899999999999999999999999999999999844


Q ss_pred             HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167          115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS  194 (469)
Q Consensus       115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~  194 (469)
                      .++..++++++.... +   +.+++....+.              .  .             .   ..+.          
T Consensus       180 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--------------~--~-------------~---~~~~----------  213 (1140)
T PRK06814        180 LMGIAVLGWLASLFI-P---KTGNAAPDLKI--------------D--R-------------N---IIRS----------  213 (1140)
T ss_pred             HHHHHHHHHHHHhhC-C---CCCCCCCCCee--------------c--c-------------c---hHHH----------
Confidence            444433333322221 1   11111000000              0  0             0   0000          


Q ss_pred             CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHH-cccCCCCcccCCC
Q 012167          195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLGSLKVPPA  273 (469)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~d~~~~g~~ip~~  273 (469)
                            .                   .+.....++-..+..+.+....++.+.....+.++..... ...+    ..-.+
T Consensus       214 ------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~----~~~~g  264 (1140)
T PRK06814        214 ------T-------------------ITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD----ENVAT  264 (1140)
T ss_pred             ------H-------------------HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc----hHHHH
Confidence                  0                   0000001100011112222223333333332223322211 1111    01134


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCCCCcc
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV-NSSEPLP  352 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~-~~~~~~~  352 (469)
                      ++.+...+..++...+..++.    ++.       ...+.+.+|.++.+++.+.+++....  .......+. -..-...
T Consensus       265 ~~~~~~~~g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~  331 (1140)
T PRK06814        265 LFLAVFSVGVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSS--VPAEPAQLKSILVFLSK  331 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccc--cccccccccchhhhhcc
Confidence            555666666666666666653    221       11223445555555444433321000  000000000 0000001


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      .+.|++++..++.+++..+..+...+++.+.+|++++|.++|++++...+|..+++.+++.+.
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788899999999999999999999999999999999999999999999998888775

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.30  E-value=5.7e-10  Score=115.82  Aligned_cols=85  Identities=22%  Similarity=0.342  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHH---HhhcccCCcchhHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV---VWIEDNKGWQWGFG  113 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~---~~l~~~~g~~~~F~  113 (469)
                      .+.+++++.+.++|.|...+...++++|.++++      +|..++++++.+.++|.++++.++   +.+.+..+|++.|.
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~  200 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG  200 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence            467888999999999999999999999999865      367789999999999999999999   77778889999999


Q ss_pred             HHHHHHHHHHHHHH
Q 012167          114 ISTATILLSIPIFL  127 (469)
Q Consensus       114 i~~v~~~i~~ii~~  127 (469)
                      +.++..++.++..+
T Consensus       201 ~~~~~~~~~~~~~~  214 (481)
T TIGR00879       201 LQLIPAGLLFLGLF  214 (481)
T ss_pred             HHHHHHHHHHHHHh
Confidence            97666655544433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.27  E-value=1.7e-09  Score=109.33  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++...+.+.+.+...|...++..+..++++    +.+....++.+.+.++|..+++.+++++.+.+||++.|.+.
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            35556666666676677777877777777654321    01112357788889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH
Q 012167          116 TATILLSIPIFL  127 (469)
Q Consensus       116 ~v~~~i~~ii~~  127 (469)
                      ++..++..++.+
T Consensus       162 ~~~~~~~~~~~~  173 (375)
T TIGR00899       162 ALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            887766655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.26  E-value=1.3e-09  Score=113.47  Aligned_cols=82  Identities=16%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++.+.+.+++.|...|...+.+.++++++      +|..++++++.+.++|..+++.+++++.+.+||++.|.+.
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3566777777888889988899999999999854      4678899999999999999999999999999999999987


Q ss_pred             HHHHHHHH
Q 012167          116 TATILLSI  123 (469)
Q Consensus       116 ~v~~~i~~  123 (469)
                      ++..++..
T Consensus       184 ~i~~~~~~  191 (434)
T PRK11663        184 GIIAIVVG  191 (434)
T ss_pred             HHHHHHHH
Confidence            77655443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.26  E-value=1.8e-09  Score=109.50  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.++|.+...+...+++.|.++++      +|.+.+++++...++|..+++.+++++.++.+|+..|.+.
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            4677888899999999999999999999999854      4678899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHh
Q 012167          116 TATILLSIPIFLL  128 (469)
Q Consensus       116 ~v~~~i~~ii~~~  128 (469)
                      ++..++..+...+
T Consensus       166 ~~~~~~~~~~~~~  178 (385)
T TIGR00710       166 SLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.26  E-value=2.3e-10  Score=119.83  Aligned_cols=285  Identities=11%  Similarity=0.017  Sum_probs=155.4

Q ss_pred             hHHHHHH-HHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           37 AVMLFAG-LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~-l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      .+.+++. .++.++|.|...+...+.+.+.+++       +|.++.++.+.+.++|..+++.+.+++.+.+||+++|.+.
T Consensus       107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~  179 (455)
T TIGR00892       107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL  179 (455)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            4445543 3667888887656566777887742       3667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ  195 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  195 (469)
                      ++..++..+..++.++.-..  +...+...          +....  +            +...   ++.....  .   
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~----------~~~~~--~------------~~~~---~~~~~~~--~---  225 (455)
T TIGR00892       180 GGLLLHCCVCGALMRPVGPS--QRVSKSKS----------KEGLP--P------------DGST---KKLSKKS--T---  225 (455)
T ss_pred             HHHHHHHHHHHHHhCCCCcc--cccccccc----------cccCC--C------------CCcc---ccccccc--h---
Confidence            88777665544333221100  00000000          00000  0            0000   0000000  0   


Q ss_pred             CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167          196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL  275 (469)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l  275 (469)
                                  . +. ..++.  ..+-..+ +.   ++...+...+....+....+.+..+..  +....  ....+.+
T Consensus       226 ------------~-~~-~~~~~--~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s--~~~~g~~  281 (455)
T TIGR00892       226 ------------A-EK-INRFL--DFSLFTH-RG---FLVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD--EYEAAFL  281 (455)
T ss_pred             ------------h-hh-hhhhc--chHHhcC-ch---HHHHHHHHHHHHHHccchHHHHHHHHH--HcCCC--HHHHHHH
Confidence                        0 00 00000  0000000 11   112222222222333333222222222  11111  0112344


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQR--IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~r--i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      .++..+..++..|+..++.+    |.  +   ....++  +.+++++.+++++.....                     .
T Consensus       282 ~~~~~~~~~~~~~~~g~l~d----~~--~---~~~~~~~~~~~~~~~~~l~~ll~~~~---------------------~  331 (455)
T TIGR00892       282 LSIIGFVDIFARPSCGLIAG----LK--W---IRPHVQYLFSFALLFNGLTHLLCALA---------------------G  331 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----cc--c---cCHHHHHHHHHHHHHHHHHHHHHHHh---------------------c
Confidence            55556666666666666543    11  0   122222  333444444444333221                     2


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      +.++++...++.+++.....+...+.+.+..|++.++..+|++.....+|+.+++.+.+.+.+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            455667778889999988999999999999999999999999999999999999999887764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=1.5e-09  Score=115.10  Aligned_cols=267  Identities=13%  Similarity=0.138  Sum_probs=168.1

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++..++++++.+.+.|..++++.+..+++      +..++.++.....|+.-++||.++|.+....|-...|.+
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i  174 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI  174 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            45788888899999999999999999999999875      366788999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167          115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS  194 (469)
Q Consensus       115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~  194 (469)
                      .+++.+++++.+...++..   +++..+-++..+-+...+                          +|            
T Consensus       175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~--------------------------ry------------  213 (524)
T PF05977_consen  175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALREGL--------------------------RY------------  213 (524)
T ss_pred             HHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHH--------------------------HH------------
Confidence            9999888766555443221   111111111100000000                          00            


Q ss_pred             CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccCCCCcccCCC
Q 012167          195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLGSLKVPPA  273 (469)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~~~g~~ip~~  273 (469)
                                                   +...+.+..++.   ...++.....-....++..++ .++.       .+.
T Consensus       214 -----------------------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~~l~~-------~a~  254 (524)
T PF05977_consen  214 -----------------------------VRSSPPLRSVLL---RSFLFNLFASAVWALLPLFARDVLGG-------GAS  254 (524)
T ss_pred             -----------------------------HhcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHHHhCC-------cHH
Confidence                                         000111111111   111122111111122333332 2221       222


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      .+..+.+  ..-.+-+.+.++.+..+|.      .+..+-+..+.++.+++++..++.                     -
T Consensus       255 ~yGll~a--~~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~---------------------~  305 (524)
T PF05977_consen  255 GYGLLLA--AFGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS---------------------P  305 (524)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc---------------------h
Confidence            2222221  1122334444444444442      333444667777777777666554                     2


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      +.+..++..++.|++...........+-+.+|++++|++++++.+....+..+|.++.+.+.+
T Consensus       306 ~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  306 SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667788999999999999999999999999999999999999888888888888887765

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.25  E-value=2.7e-09  Score=109.66  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++.+.+.+++.|...|...+++.|+++++      +|..+.++++.+.|+|.+++|.+++++.+.+||+..|.+
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            45788999999999999999999999999999754      467789999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 012167          115 STATILLSI  123 (469)
Q Consensus       115 ~~v~~~i~~  123 (469)
                      .++..++..
T Consensus       180 ~~~l~~~~~  188 (394)
T PRK10213        180 AAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHH
Confidence            776555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.24  E-value=4.4e-09  Score=111.29  Aligned_cols=85  Identities=16%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~-~~g~~~~F~i  114 (469)
                      +.+.+++...+.+++.+...+...++..|+++++      +|.++.++.-.+.++|.++++.+++++.+ ..||+..|.+
T Consensus       106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i  179 (491)
T PRK11010        106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL  179 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence            4677777888889999999999999999999854      36677888889999999999999999988 4799999999


Q ss_pred             HHHHHHHHHHHH
Q 012167          115 STATILLSIPIF  126 (469)
Q Consensus       115 ~~v~~~i~~ii~  126 (469)
                      .++..++..+..
T Consensus       180 ~a~l~ll~~l~~  191 (491)
T PRK11010        180 MAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHH
Confidence            887776665443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.24  E-value=2.5e-09  Score=109.70  Aligned_cols=72  Identities=8%  Similarity=0.039  Sum_probs=52.1

Q ss_pred             cccccccccchhcccCCCCChhhhhhHh-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHH
Q 012167           51 VGGIKGSLAPHGAEQYDETTQLGRKQRS-AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL  127 (469)
Q Consensus        51 ~G~~kp~~~a~~~dq~~~~~~~~~~~~~-~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~  127 (469)
                      .+...|...++..|+.++++     +.. .+.++...+.++|.++||.+++++.+++||+..|.+.++..++..+...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        119 GSTANPQMFALAREHADKTG-----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            34566777777777654321     122 2336788899999999999999999999999999988876665554433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.24  E-value=1.5e-09  Score=109.48  Aligned_cols=261  Identities=10%  Similarity=0.085  Sum_probs=150.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC--------
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--------  107 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g--------  107 (469)
                      +.+.++....+.+++.+...|...+++.|.++++      +|..+.++...+.++|.++++.+++++..+.|        
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            3455555556677888888999999999999753      46788899999999999999999999988888        


Q ss_pred             cchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCch-hHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcccccc
Q 012167          108 WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLT-TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNS  186 (469)
Q Consensus       108 ~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~  186 (469)
                      |+..|.+.++..+++.++.++..+.    +++..+.. +..+-.    ++                              
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e----~~~~~~~~~~~~~~~----~~------------------------------  197 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKE----PQEDASVPKPLTQAV----LK------------------------------  197 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccC----CCcccccchhHHHHH----HH------------------------------
Confidence            9999999888777765543332211    11100000 000000    00                              


Q ss_pred             ccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCC
Q 012167          187 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG  266 (469)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~  266 (469)
                                                  .+     .+.-..+...+++.+.+...++...+.+..+.++.+..++    +
T Consensus       198 ----------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g  240 (356)
T TIGR00901       198 ----------------------------PI-----REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM----G  240 (356)
T ss_pred             ----------------------------HH-----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C
Confidence                                        00     0000001111122333333344444444444444332221    1


Q ss_pred             CcccCCCC---CCChhH-HHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012167          267 SLKVPPAS---LPVFPV-IFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS  342 (469)
Q Consensus       267 g~~ip~~~---l~~~n~-l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~  342 (469)
                         .+++.   +..... +..++..++..++.    +|       .+..+.+.+++++.+++.....+... .   ...+
T Consensus       241 ---~~~~~~g~~~~~~~~~~~~~g~~~~g~l~----~r-------~g~~~~l~~~~~~~~~~~~~~~~~~~-~---~~~~  302 (356)
T TIGR00901       241 ---FSKEEIALVAKINGLLGAILGGLIGGIIM----QP-------LNILYALLLFGIVQALTNAGFVWLAS-N---GHHD  302 (356)
T ss_pred             ---CCHHHHHHHhHHHHHHHHHHHHHHHHHHH----hh-------hhHHHHHHHHHHHHHHHHHHHHHHHh-c---Cccc
Confidence               22332   232223 22333444444443    33       23334566777777766655443310 0   0000


Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHH
Q 012167          343 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA  401 (469)
Q Consensus       343 g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~  401 (469)
                      +      ....+.++++...++.++++.+..+....+..+.+|+++||+++|+.....+
T Consensus       303 ~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 G------ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             c------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            0      0012455677778899999999999999999999999999999999877654

>PRK10504 putative transporter; Provisional

Probab=99.22  E-value=9.2e-09  Score=107.94  Aligned_cols=87  Identities=13%  Similarity=0.115  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.++|.|...|...+++.|.++++      ++..++++...+.++|..++|.+++++.++.||++.|.+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            3667788899999999999999999999988743      4567889999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHh
Q 012167          116 TATILLSIPIFLL  128 (469)
Q Consensus       116 ~v~~~i~~ii~~~  128 (469)
                      .....++.+....
T Consensus       171 ~~~~~l~~~~~~~  183 (471)
T PRK10504        171 IPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766655554443

>TIGR00895 2A0115 benzoate transport

Probab=99.21  E-value=3.3e-09  Score=107.63  Aligned_cols=84  Identities=19%  Similarity=0.280  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.++++..+.++|.|...|...+++.|.++++      +|..+++++..+.++|..+++.+++++.+..||+..|.+.
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  177 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG  177 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence            3567888899999999999999999999998753      4677899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHH
Q 012167          116 TATILLSIPI  125 (469)
Q Consensus       116 ~v~~~i~~ii  125 (469)
                      ++..++..++
T Consensus       178 ~~~~~~~~~~  187 (398)
T TIGR00895       178 GIAPLLLLLL  187 (398)
T ss_pred             hhHHHHHHHH
Confidence            6555444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.21  E-value=2.1e-09  Score=113.82  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=73.4

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++++.+.++|.|+..|...+.+.+.+.+++     +|.++++++..+.++|..+||.+++++.+++||++.|.+
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            357888999999999999999988888888775431     477899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH
Q 012167          115 STATILLSIPIF  126 (469)
Q Consensus       115 ~~v~~~i~~ii~  126 (469)
                      .....++.+++.
T Consensus       167 ~~~~~~~~~~l~  178 (495)
T PRK14995        167 NVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            776666555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.20  E-value=1.3e-09  Score=109.56  Aligned_cols=84  Identities=15%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.++|.|...+...+...+.+++       +|..+.+++..+.++|.++++.+.+.+.+..||+..|.+.
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~  162 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM  162 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence            467788888899999998888888888887753       2567888999999999988777777777778999999998


Q ss_pred             HHHHHHHHHHH
Q 012167          116 TATILLSIPIF  126 (469)
Q Consensus       116 ~v~~~i~~ii~  126 (469)
                      ++..++..+..
T Consensus       163 ~~~~~~~~~~~  173 (377)
T TIGR00890       163 GIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHHHHH
Confidence            88776655443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.19  E-value=9.4e-09  Score=104.26  Aligned_cols=84  Identities=11%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST  116 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~  116 (469)
                      .+.+++.+.+.+++.+...+...+++.|.++++      +|.+++++.+.+.++|..+++.+++++.+..+|+..|.+.+
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  152 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA  152 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            566778888899999999999999999998754      46788999999999999999999999999899999999877


Q ss_pred             HHHHHHHHHH
Q 012167          117 ATILLSIPIF  126 (469)
Q Consensus       117 v~~~i~~ii~  126 (469)
                      +..++..+..
T Consensus       153 ~~~~~~~~~~  162 (377)
T PRK11102        153 LAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHH
Confidence            7776655443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.19  E-value=2.9e-09  Score=110.10  Aligned_cols=78  Identities=21%  Similarity=0.364  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.++|.|...+...+++.|.++++      +|.++.+++..+.++|.++++.+.+++.+.+||++.|.+.
T Consensus       105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~  178 (426)
T PRK12307        105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG  178 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence            4778899999999999999999999999998864      3667888999999999999999999999999999999885


Q ss_pred             HHHH
Q 012167          116 TATI  119 (469)
Q Consensus       116 ~v~~  119 (469)
                      .+..
T Consensus       179 ~~~~  182 (426)
T PRK12307        179 LLPV  182 (426)
T ss_pred             HHHH
Confidence            5443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.19  E-value=7e-09  Score=107.82  Aligned_cols=81  Identities=22%  Similarity=0.366  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCC
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKG  107 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g  107 (469)
                      +...+.+.+.+.++|.|+..|...++++|.++++      +|..+.++.+.+.+.|.++++.+...+.        ..+|
T Consensus       123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  196 (432)
T PRK10406        123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG  196 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence            3557888999999999999999999999999865      3556788889999999999887766554        2579


Q ss_pred             cchhHHHHHHHHHHH
Q 012167          108 WQWGFGISTATILLS  122 (469)
Q Consensus       108 ~~~~F~i~~v~~~i~  122 (469)
                      |+..|.+.++..++.
T Consensus       197 Wr~~F~i~~~~~ll~  211 (432)
T PRK10406        197 WRIPFALGAVLAVVA  211 (432)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999876655443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.18  E-value=8.2e-09  Score=106.96  Aligned_cols=266  Identities=12%  Similarity=0.138  Sum_probs=149.5

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCCcc
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-------DNKGWQ  109 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~-------~~~g~~  109 (469)
                      ...+++...+.+++.+.+.+...++..+..++.  +   +|.+..++...+.++|.+++..+.+.+.       +..+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--R---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence            455555666677888888888888888876543  2   3667888888999999888766654443       346899


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccC
Q 012167          110 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK  189 (469)
Q Consensus       110 ~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~  189 (469)
                      ..|.+.++..++..++.....+    ++++..+..           +      +                   +  +   
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~----e~~~~~~~~-----------~------~-------------------~--~---  208 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTK----ERYSEIPKN-----------I------E-------------------K--K---  208 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCE----ecCCCCCcc-----------c------c-------------------c--C---
Confidence            8888877776655544333221    111100000           0      0                   0  0   


Q ss_pred             CCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHH---HHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCC
Q 012167          190 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG  266 (469)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~  266 (469)
                                             . +.       .+..|.++   .+..+.+...+.+..+....+.....   .+..++
T Consensus       209 -----------------------~-~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  254 (437)
T TIGR00792       209 -----------------------L-SL-------KQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY---FTYVLG  254 (437)
T ss_pred             -----------------------C-CH-------HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee---EeeecC
Confidence                                   0 00       01111111   11112222222333222211111111   111111


Q ss_pred             CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167          267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN  346 (469)
Q Consensus       267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~  346 (469)
                       ..-..+++..+..+..++..|+..++.    +|.       ...+-+.+|.++.+++++...+..              
T Consensus       255 -~~~~~~~~~~~~~i~~ii~~~~~~~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~~--------------  308 (437)
T TIGR00792       255 -DPELFSYMGSIAIVAGLIGVLLFPRLV----KKF-------GRKILFAGGILLMVLGYLIFFFAG--------------  308 (437)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcc--------------
Confidence             000112333444555556666665554    342       222345677777777766554431              


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167          347 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT  418 (469)
Q Consensus       347 ~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t  418 (469)
                            .+.++.+...++.+++.....+...+++.+.+|       ++.+|.++|++.+...+|..+++.+.+.+.+..
T Consensus       309 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       309 ------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                  133455566788889998888999999888876       667899999999999999999999988876543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.18  E-value=1.3e-09  Score=114.58  Aligned_cols=314  Identities=14%  Similarity=0.104  Sum_probs=167.0

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +...+++++.+.++|.|...|...+++.|.++++      +|.+++++++.+.++|..+++.+++++.+++||++.|.+.
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            4677888999999999999999999999999854      4677899999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHH-HHHH--HhhccCCCCCccccccccCCCCCCCCcc-ccccccCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVL-TAAI--FNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSNVKEK  191 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~-~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~~~~~~  191 (469)
                      +...++..++..+..+.-+  +.+.++.......+ ..+.  .........               ...| +...+....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  225 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDK--PAASENFDFLGLLLLSVGLGSLLYGLSEGP---------------ERGWFDSNEILILS  225 (485)
T ss_pred             hHHHHHHHHHHHHHcCCcc--ccccCCCcHHHHHHHHHHHHHHHHHHhhCC---------------CCCCCCchHHHHHH
Confidence            7666555544333222111  11111111110000 0000  000000000               0001 000000000


Q ss_pred             CCCCCCchhHHHH-hhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHH-cccCCCCcc
Q 012167          192 VPSQKPTEDIKFL-NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLGSLK  269 (469)
Q Consensus       192 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~d~~~~g~~  269 (469)
                      ...  --.-..+. ...+++.+..+++.++     + +.+.   ...+...+....+....+..+....+ .+.+    .
T Consensus       226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s----~  290 (485)
T TIGR00711       226 ITG--LVAIIAFVVWELTDDNPLVDLRLFK-----Y-RNFT---IGCVYMSLLGLGLYGSFYLLPLYLQQVLGYT----A  290 (485)
T ss_pred             HHH--HHHHHHHHHHHHcCCCCccCHHHHc-----C-CChH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----H
Confidence            000  00000000 0000000000111000     0 1111   11111122222222222222222211 1111    0


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012167          270 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE  349 (469)
Q Consensus       270 ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~  349 (469)
                      ...+.+.....+..++..|+..++.+    |       .+..+-+.+|.++.++++....+.-                 
T Consensus       291 ~~~g~~~~~~~~~~~~~~~~~g~l~~----r-------~~~~~~~~~g~~~~~~~~~~~~~~~-----------------  342 (485)
T TIGR00711       291 LQAGLHILPVGLAPMLSSPIAGRMGD----K-------IDPRKLVTIGLILYAVGFYWRAFTF-----------------  342 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh----h-------cCcHHHHHHHHHHHHHHHHHHhccC-----------------
Confidence            11234445555666666777666543    3       2222335667777777766654210                 


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          350 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       350 ~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      ....+.++++...++.++|..+..+.....+.+..|++.+|.++|++++...+|+.+|+.+.+.+.
T Consensus       343 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       343 TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            012345556666889999999888888888888899999999999999999999999887776554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.15  E-value=1.1e-08  Score=104.43  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF  112 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F  112 (469)
                      +.+.+++++++.+++.|...|...+...+..+++      +|.+.+++++.+.|+|..+|+.+++++.+...+...+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  163 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW  163 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            4778888999999999999998887777776643      3667899999999999999999999988764444333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.15  E-value=9.3e-09  Score=104.77  Aligned_cols=83  Identities=20%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +...+++++++.++|.|.. ++..+..+++++++      +|.++.+++..+.++|.++++++++++.+++||+..|.+.
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            5788999999999999975 45555568888753      4778999999999999999999999999999999999986


Q ss_pred             HHHHHHHHHH
Q 012167          116 TATILLSIPI  125 (469)
Q Consensus       116 ~v~~~i~~ii  125 (469)
                      ++..++..++
T Consensus       151 ~~l~~~~~~~  160 (368)
T TIGR00903       151 AAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHH
Confidence            6665544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.15  E-value=1.1e-08  Score=104.57  Aligned_cols=85  Identities=13%  Similarity=0.173  Sum_probs=70.9

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++++.+.+++.|...|...+...+.++++      +|.++++++..+.++|..+++.+++++.+..+|++.|.+
T Consensus        89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            34788899999999999998888888888887653      355688888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 012167          115 STATILLSIPI  125 (469)
Q Consensus       115 ~~v~~~i~~ii  125 (469)
                      .++..++..+.
T Consensus       163 ~~~~~~~~~~~  173 (382)
T PRK10091        163 IAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHH
Confidence            88766555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.15  E-value=1.6e-08  Score=103.91  Aligned_cols=295  Identities=12%  Similarity=0.068  Sum_probs=162.6

Q ss_pred             HHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHH
Q 012167           41 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL  120 (469)
Q Consensus        41 ~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~  120 (469)
                      ++.+.+.++|.|++.|...+++.|.++++      +|.++.++.....++|.++||.++|++.+. .|...|.+.+.+.+
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            55677899999999999999999999864      477899999999999999999999999885 47777777665554


Q ss_pred             HHHHHHHhcCCcccccCCCCCCch-hHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCCCCch
Q 012167          121 LSIPIFLLGSPFYRNKIPTGSPLT-TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  199 (469)
Q Consensus       121 i~~ii~~~~~~~~~~~~p~~~~l~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~  199 (469)
                      ++.+....-.    +.+++..+.+ +..+.. ...++                           .               
T Consensus       165 ~~~~~~~~l~----~~~~~~~~~~~~~~~~~-~~~~~---------------------------~---------------  197 (393)
T PRK11195        165 LAALFNLFIP----RLGARRPGQSWNPIALL-RDFFH---------------------------A---------------  197 (393)
T ss_pred             HHHHHHhcCC----CCcccccccCCCHHHHH-HHHHH---------------------------H---------------
Confidence            4433322211    1111100000 000000 00000                           0               


Q ss_pred             hHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccCCCCcccCCCCCCCh
Q 012167          200 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLGSLKVPPASLPVF  278 (469)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~~~g~~ip~~~l~~~  278 (469)
                                      +     ..+-..+. ++.  ......+++.+.......+....+ ....+    ....+.+...
T Consensus       198 ----------------~-----~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s----~~~~G~~~~~  249 (393)
T PRK11195        198 ----------------C-----RVLWRDKL-GRF--SLAGTTLFWGAGATLRFLVLAWAPVALGIT----LNQPAYLQAV  249 (393)
T ss_pred             ----------------H-----HHHHhCch-hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----hhHHHHHHHH
Confidence                            0     00000011 111  111222333333333222221111 11111    0112334444


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 012167          279 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  358 (469)
Q Consensus       279 n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  358 (469)
                      .++..++..++.+++.    +|       ....+.+..|+. .++.+...++.                     .+.++.
T Consensus       250 ~~~g~i~g~~~~~~l~----~~-------~~~~~~~~~g~~-~~~~~~~~~~~---------------------~~~~~~  296 (393)
T PRK11195        250 VAIGIAVGAGAAARLV----TL-------ETVLRVLPAGIL-MGLVVLLMALQ---------------------HSLLPA  296 (393)
T ss_pred             HHHHHHHHHHHHHHHh----cC-------CcccchHHHHHH-HHHHHHHHHHH---------------------hHHHHH
Confidence            4455555555554432    22       122233445543 33332222211                     245566


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhccCcch-hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhH
Q 012167          359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSM-RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL  437 (469)
Q Consensus       359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~-~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l  437 (469)
                      +...++.+++..+..+...+.+.+.+|++. +|..+|+.++...+|..++..+...+...        .+        +.
T Consensus       297 ~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--------~~--------~~  360 (393)
T PRK11195        297 YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--------GV--------PV  360 (393)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--------CC--------CH
Confidence            777788999988888888888888877766 79999999999999999988887766431        11        22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167          438 ERFYWLMCILGGLNFLHFLFWAARYKYSS  466 (469)
Q Consensus       438 ~~~f~~la~l~l~~~l~~~~~~~~~~~~~  466 (469)
                      .+.+..++.+.......++...+|.+++-
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK11195        361 VAVIVGFGLLVALAMALLWRWHRRNQRQF  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            44566666665555566666666655543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.15  E-value=1.8e-08  Score=105.86  Aligned_cols=85  Identities=19%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCC
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKG  107 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g  107 (469)
                      ....+++++++.++|.|+.-|...++++|+++++      +|..+.+++..+..+|.++++.++..+.        +.+|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  192 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG  192 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence            3567889999999999999999999999999864      3667888888999999999887766543        4579


Q ss_pred             cchhHHHHHHHHHHHHHHH
Q 012167          108 WQWGFGISTATILLSIPIF  126 (469)
Q Consensus       108 ~~~~F~i~~v~~~i~~ii~  126 (469)
                      |++.|.+.++..++..+..
T Consensus       193 Wr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        193 WRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999998877666654433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.14  E-value=1.5e-08  Score=104.10  Aligned_cols=81  Identities=10%  Similarity=0.312  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-CcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-g~~~~F~i  114 (469)
                      +...+++++++.++|.|...+...+.+.+++++       +|..+.+++..+.++|..+|+.+++++.++. +|+..|.+
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~  168 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW  168 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            366788899999999999999999999988863       2557888888999999999999999998875 89988776


Q ss_pred             HHHHHHHHH
Q 012167          115 STATILLSI  123 (469)
Q Consensus       115 ~~v~~~i~~  123 (469)
                      .++..++.+
T Consensus       169 ~~~~~~~~~  177 (393)
T PRK09705        169 WALPAVVAL  177 (393)
T ss_pred             HHHHHHHHH
Confidence            555444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.14  E-value=1.8e-08  Score=105.34  Aligned_cols=84  Identities=11%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa-~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      +.+.+++.+.+.+++.|...|...+...++++++      +|..+.++++.+.++|. +++++++..+....+|++.|.+
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            3566777888899999999998888899988754      36678899999999986 5566654444444599999999


Q ss_pred             HHHHHHHHHHH
Q 012167          115 STATILLSIPI  125 (469)
Q Consensus       115 ~~v~~~i~~ii  125 (469)
                      .++..++..++
T Consensus       193 ~~~~~~~~~~l  203 (452)
T PRK11273        193 PAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHHHH
Confidence            88776654433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.13  E-value=8.4e-09  Score=107.72  Aligned_cols=311  Identities=14%  Similarity=0.152  Sum_probs=184.7

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i~  115 (469)
                      .+.+.+.+++.|++.|...|++..+.+++.|++      +|..+.+..+.+..+|.+++..++|++-+. .||+..|++.
T Consensus       128 ~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~  201 (466)
T KOG2532|consen  128 FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVF  201 (466)
T ss_pred             chhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHH
Confidence            346788899999999999999999999999975      377899999999999999999999999998 9999999998


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchh--HHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTT--IFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP  193 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~  193 (469)
                      ++..++-.+++.+.   |.+ .|+++|...  ..+.+.    +                            .+...... 
T Consensus       202 g~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I~----~----------------------------~k~~~~~~-  244 (466)
T KOG2532|consen  202 GIVGLIWFILWFLF---YSD-SPSKHPNISEKELKYIE----K----------------------------GKSEAHVK-  244 (466)
T ss_pred             HHHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHHH----h----------------------------cccccccC-
Confidence            87775554443331   333 355454321  111110    0                            00000000 


Q ss_pred             CCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH-HHcccCCCCccc-C
Q 012167          194 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKV-P  271 (469)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~d~~~~g~~i-p  271 (469)
                                      ++...||           |++++-.++|...+..+. .+.....+..+. ..|+ ++.++.+ .
T Consensus       245 ----------------~~~~vP~-----------~~i~ts~~vwai~~~~f~-~~~~~~~l~~y~PtY~~-~VL~f~v~~  295 (466)
T KOG2532|consen  245 ----------------KKPPVPY-----------KAILTSPPVWAIWISAFG-GNWGFYLLLTYLPTYLK-EVLGFDVRE  295 (466)
T ss_pred             ----------------CCCCCCH-----------HHHHcCHHHHHHHHHHHH-HHHHHHHHHHHhhHHHH-HHhCCChhh
Confidence                            0012233           334333333332221111 111111111111 1222 1122222 3


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGT--GLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE  349 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~--G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~  349 (469)
                      .+++.+++.+...+...+.+.+-+++.+| .-.   .+..+|+.-  ++...+++++++++..              .+ 
T Consensus       296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~~-  356 (466)
T KOG2532|consen  296 TGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------DE-  356 (466)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------CC-
Confidence            67888899999888888888888888776 222   345556543  4444444444444431              10 


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCC
Q 012167          350 PLPITFLWVALQYLFLGSADLFTL--AGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWL  427 (469)
Q Consensus       350 ~~~~s~~wli~~~~l~~igE~~i~--~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~  427 (469)
                       ..    |.  +.++++++..+..  ..+..--....-+++-+.+||+.+....++.+++|.+++.+.+ .+  ...+| 
T Consensus       357 -~~----~~--a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW-  425 (466)
T KOG2532|consen  357 -HR----LL--AVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW-  425 (466)
T ss_pred             -cc----hH--HHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH-
Confidence             01    11  2233333333332  2333333333134677899999999999999999999988763 11  11245 


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          428 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWA  459 (469)
Q Consensus       428 ~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~  459 (469)
                                ...|++.+++.++..++|.++.
T Consensus       426 ----------~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  426 ----------RIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             ----------HHHHHHHHHHHHHhchheeEee
Confidence                      5689999999999998888874

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.12  E-value=3.9e-08  Score=100.68  Aligned_cols=83  Identities=16%  Similarity=0.023  Sum_probs=67.2

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++.+.+.+++.|...+...++..|.++++      ++..+.+++..+..+|.+++|.+++++.+..||+..|.+.
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~  168 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL  168 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            3667888888899998888888888888877643      3556788888999999999999999999989999999987


Q ss_pred             HHHHHHHHH
Q 012167          116 TATILLSIP  124 (469)
Q Consensus       116 ~v~~~i~~i  124 (469)
                      ++..++..+
T Consensus       169 ~~~~~~~~~  177 (394)
T PRK11652        169 LLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHH
Confidence            766554433

>PRK03699 putative transporter; Provisional

Probab=99.11  E-value=3.6e-08  Score=101.17  Aligned_cols=85  Identities=9%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~-~~~g~~~~F~i  114 (469)
                      +.+.+++.+.+.+++.|...+...+.+.+.++++      +|....+..+...++|+.++|.+.+++. +..||+..|.+
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~  167 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC  167 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            4667888889999999999999999999998653      3556677788888999999999888764 56799999998


Q ss_pred             HHHHHHHHHHHH
Q 012167          115 STATILLSIPIF  126 (469)
Q Consensus       115 ~~v~~~i~~ii~  126 (469)
                      .++..++..++.
T Consensus       168 ~~~~~~~~~~~~  179 (394)
T PRK03699        168 IGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            777665554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.11  E-value=5.8e-09  Score=105.53  Aligned_cols=81  Identities=22%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCCcc
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQ  109 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g~~  109 (469)
                      ..+++++.+.++|.|...|...+++.|.++++      +|....++.+.+.++|.++++.+.+.+.        +.++|+
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~  170 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR  170 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence            46788889999999999999999999998765      3667888899999999999998877653        357999


Q ss_pred             hhHHHHHHHHHHHHH
Q 012167          110 WGFGISTATILLSIP  124 (469)
Q Consensus       110 ~~F~i~~v~~~i~~i  124 (469)
                      +.|.+.++..+++.+
T Consensus       171 ~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       171 IPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887766655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.10  E-value=5.5e-08  Score=101.41  Aligned_cols=78  Identities=23%  Similarity=0.299  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCCcc
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQ  109 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g~~  109 (469)
                      ..+.+.+.+.++|.|+.-|+..+++.+.++++      +|....+....+.++|.+++..+..++.        +.+||+
T Consensus       126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr  199 (438)
T PRK09952        126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR  199 (438)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence            35778899999999999999999999998865      3556677788888899888877766654        357999


Q ss_pred             hhHHHHHHHHHH
Q 012167          110 WGFGISTATILL  121 (469)
Q Consensus       110 ~~F~i~~v~~~i  121 (469)
                      ..|.+.++..++
T Consensus       200 ~~f~~~~~~~l~  211 (438)
T PRK09952        200 IPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHH
Confidence            999987765433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.10  E-value=3.5e-08  Score=108.52  Aligned_cols=86  Identities=13%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc----------
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN----------  105 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~----------  105 (469)
                      +.+.+++++++.++|.|+..|...+++.+.++++      +|...++++..+..+|.++++.++.++...          
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~  327 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA  327 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence            4678889999999999999999999999999854      466778888888899999988776555432          


Q ss_pred             ---CCcchhHHHHHHHHHHHHHHHH
Q 012167          106 ---KGWQWGFGISTATILLSIPIFL  127 (469)
Q Consensus       106 ---~g~~~~F~i~~v~~~i~~ii~~  127 (469)
                         .+|++.|++.++..++.++..+
T Consensus       328 ~~~~gWR~l~~i~~lp~ll~ll~~~  352 (742)
T TIGR01299       328 YQFHSWRVFVIVCAFPCVFAIGALT  352 (742)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHH
Confidence               3688888887776665554433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.10  E-value=3.4e-08  Score=99.85  Aligned_cols=89  Identities=15%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHH
Q 012167           34 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG  113 (469)
Q Consensus        34 ~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~  113 (469)
                      ..+.+.+.+++++.++.-|.|.+-..+..+|..+++      +|.++.+..+.+..+.-.+|..++.++.+.+|||..|.
T Consensus        98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            346899999999999999999999999999999986      47789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 012167          114 ISTATILLSIPIFLL  128 (469)
Q Consensus       114 i~~v~~~i~~ii~~~  128 (469)
                      +.++.-++.++..+.
T Consensus       172 ~ia~l~ll~~~~~~~  186 (394)
T COG2814         172 AIAVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777666665544

>TIGR00898 2A0119 cation transport protein

Probab=99.07  E-value=5.8e-08  Score=102.85  Aligned_cols=83  Identities=18%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++.+++.+++.|+..|...+++.|.++++      +|..+.+++..+..+|.++++.++.++.+   |++.|.+.
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~  249 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV  249 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence            4678888999999999999999999999999865      35567777888889999999988877654   99999988


Q ss_pred             HHHHHHHHHHHH
Q 012167          116 TATILLSIPIFL  127 (469)
Q Consensus       116 ~v~~~i~~ii~~  127 (469)
                      ++..++..+..+
T Consensus       250 ~i~~~~~~~~~~  261 (505)
T TIGR00898       250 SLPTFLFFLLSW  261 (505)
T ss_pred             HHHHHHHHHHHH
Confidence            877766555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.06  E-value=3.6e-08  Score=114.74  Aligned_cols=268  Identities=10%  Similarity=0.017  Sum_probs=150.8

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc--------C-
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------K-  106 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~--------~-  106 (469)
                      +.+.+++.+++.+++.|.+.|...+++.|.++++      +|..+++++..+.++|.++|+.+++++.+.        . 
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~  175 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL  175 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            3678888999999999999999999999999865      367899999999999999999999998775        2 


Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcccccc
Q 012167          107 GWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNS  186 (469)
Q Consensus       107 g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~  186 (469)
                      +|.+.+.+.++...+..+++.+..+   + .|..++...          ++  .                    ..    
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~----------~~--~--------------------~~----  215 (1146)
T PRK08633        176 GRIAPAGLVLLAVAVLGLIFAYRLP---K-VPAAAPEVF----------DK--K--------------------KY----  215 (1146)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCc---C-CCCCCcccc----------cc--c--------------------cc----
Confidence            2333333333333222222222111   1 111000000          00  0                    00    


Q ss_pred             ccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHH---HHHHHHHhhHHHHHhhhcchhHHHHHHH-Hcc
Q 012167          187 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMN  262 (469)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d  262 (469)
                                                 ...    .+..+..+.++   .+..+.+...+++.......+.+..... ...
T Consensus       216 ---------------------------~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  264 (1146)
T PRK08633        216 ---------------------------LFP----KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLG  264 (1146)
T ss_pred             ---------------------------ccH----HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence                                       000    00000111111   1111222223333332222222222211 111


Q ss_pred             cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012167          263 TKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS  342 (469)
Q Consensus       263 ~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~  342 (469)
                      .+   .....+++.++..+..++..++.+++    .+|       ....+.+.+|.++.+++++..++.           
T Consensus       265 ~s---~~~~~g~~~~~~~ig~~~g~~~~g~l----~~r-------~~~~~~~~~~~~~~~~~~~~~~~~-----------  319 (1146)
T PRK08633        265 LD---NTFQVQYLLAASAIGIGIGSLLAGRL----SGR-------HIELGLVPLGALGLALSLFLLPTA-----------  319 (1146)
T ss_pred             CC---cHHHHHHHHHHHHHHHHHHHHHHHHH----hCC-------ceEccchhHHHHHHHHHHHHHHHh-----------
Confidence            11   00011233333344444444444443    333       222234556766666666555443           


Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          343 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       343 g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                                .+.++++...++.+++..+..+....++.+.+|++.||.++|+..+...+|..+++.++.++.
T Consensus       320 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        320 ----------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                      245667777899999999999999999999999999999999999999999888777766554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.06  E-value=1.3e-08  Score=103.72  Aligned_cols=82  Identities=22%  Similarity=0.342  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC--cchhHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--WQWGFG  113 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g--~~~~F~  113 (469)
                      +.+.+++++.+.++|.|...|...+++.|.++++      +|..+++++..+.++|..+++.+++.+.+..+  |++.|.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~  172 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF  172 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            4677888999999999999999999999999864      36778999999999999999999999887766  999998


Q ss_pred             HHHHHHHHHH
Q 012167          114 ISTATILLSI  123 (469)
Q Consensus       114 i~~v~~~i~~  123 (469)
                      +.++..++.+
T Consensus       173 ~~~~~~~~~~  182 (405)
T TIGR00891       173 ISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHH
Confidence            8665554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.05  E-value=1.2e-08  Score=105.58  Aligned_cols=139  Identities=13%  Similarity=0.090  Sum_probs=93.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+.+++.+..++..++..++.+++.+           .+.+.++.++.+++++..++.                     
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------~~~~~~~~~l~~~~~~l~~~~---------------------  312 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGA-----------KNALLLAGTIMAVRIIGSGFA---------------------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHhc---------------------
Confidence            344555556556666666666443322           233666777777776665543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHH-HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                      .++++++...++.+++.....+...+++.+..|++.++...+. +++...+|..+++.+.+.+.+..      +|     
T Consensus       313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G~-----  381 (420)
T PRK09528        313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------GF-----  381 (420)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------Cc-----
Confidence            2456777788889988888888888999999999999987655 66778899999998888876521      12     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                            ...|..++++.++..++.+...|
T Consensus       382 ------~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        382 ------QGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhc
Confidence                  44677777777666655555444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.05  E-value=8.6e-09  Score=103.40  Aligned_cols=309  Identities=12%  Similarity=0.038  Sum_probs=175.8

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHH--HhhcccCCcchhHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV--VWIEDNKGWQWGFG  113 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~--~~l~~~~g~~~~F~  113 (469)
                      +.+.+.+-..+.+.-.|.--|.....++.+|+++      +|-+..++.-.+.|+|+.+.+.++  +++..+++|+.+|.
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            5677777778888889999999999999999976      266778889999999999999999  99999999999999


Q ss_pred             HHHHHHH-HHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCC
Q 012167          114 ISTATIL-LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV  192 (469)
Q Consensus       114 i~~v~~~-i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~  192 (469)
                      +|+++.+ ++++.+...+.     .|+..-+.++-        +.+-                       |..... +.+
T Consensus       190 ~pgiiaiival~~~~~~rd-----~Pqs~GLP~ie--------~~~~-----------------------d~~e~~-~~~  232 (448)
T COG2271         190 FPGIIAIIVALILLFLLRD-----RPQSEGLPPIE--------EYRG-----------------------DPLEIY-EEE  232 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCC-----CccccCCCCHH--------Hhhc-----------------------Cchhhh-hhh
Confidence            9998665 45555554432     23311111000        0000                       111100 000


Q ss_pred             CCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhh------hcchhHHHHHHHHcccCCC
Q 012167          193 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCL------AQLSTFSVQQAATMNTKLG  266 (469)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~------~Q~~s~~~~qa~~~d~~~~  266 (469)
                      +   |.               .+.   +..| .-.|.+++--.+|...+.+..+|      ++....|..|..+.+..  
T Consensus       233 ~---~~---------------~~l---s~~~-i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~--  288 (448)
T COG2271         233 K---EN---------------EGL---TAWQ-IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV--  288 (448)
T ss_pred             c---cC---------------CCc---cHHH-HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH--
Confidence            0   00               000   0000 12233443334444444444443      33444566554454432  


Q ss_pred             CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167          267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN  346 (469)
Q Consensus       267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~  346 (469)
                          .+.+..++-...-+...-+.+++.+++.+.+           |...+++++..-++.....-     .+       
T Consensus       289 ----~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr-----------R~p~~~i~~~~i~~~~~~~w-----~~-------  341 (448)
T COG2271         289 ----KANWAISLFEVAGLPGTLLAGWLSDKLFKGR-----------RGPMALIFMLLITASLVLYW-----LA-------  341 (448)
T ss_pred             ----HHHHHHHHHHHHhhHHHHHHHHHHHHhcccc-----------cchHHHHHHHHHHHHHHHHH-----cC-------
Confidence                2344444445556666777888988887532           11123332222222211110     00       


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHhhhhhH--HHHhhccCcchhhHHHHHHHHHHHH-HHHHHHHhHhhhccccccCCC
Q 012167          347 SSEPLPITFLWVALQYLFLGSADLFTLAGMM--EFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRH  423 (469)
Q Consensus       347 ~~~~~~~s~~wli~~~~l~~igE~~i~~~~~--~~~~~~aP~~~~g~~~gl~~l~~~i-G~~l~~~l~~~~~~~t~~~~~  423 (469)
                      +    ..|.  .+...++..+|-...-|..+  -.+.+.+|++.-|++.|+-.++..+ |..+++...+.+.+.      
T Consensus       342 ~----~~~~--~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~------  409 (448)
T COG2271         342 P----NGSY--LLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT------  409 (448)
T ss_pred             C----CccH--HHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec------
Confidence            0    1122  22233444455444444432  2456789999999999999999888 888888888877653      


Q ss_pred             CCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          424 TPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       424 ~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                      .+|-           ..|.++.+.++++.++++.+.+.
T Consensus       410 ~gW~-----------g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         410 WGWD-----------GGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             CCCc-----------chHHHHHHHHHHHHHHHHHHHhh
Confidence            2462           35555666666666655555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.04  E-value=1.1e-08  Score=102.87  Aligned_cols=86  Identities=10%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHH-HHHHhhcccCCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAV-TFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~-~~~~~l~~~~g~~~~F~i  114 (469)
                      +.+.+++++.+.+++.|...|...+++.|.++++      +|.+++++...+.++|..+++ .+++.+.+..+|+..|.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV  155 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            4678888999999999999999999999999864      366788889999999999999 577778888899999998


Q ss_pred             HHHHHHHHHHHHH
Q 012167          115 STATILLSIPIFL  127 (469)
Q Consensus       115 ~~v~~~i~~ii~~  127 (469)
                      .++..++..++.+
T Consensus       156 ~~~~~~~~~~~~~  168 (379)
T TIGR00881       156 PGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHHHHHHHh
Confidence            8876655544433

>PRK11043 putative transporter; Provisional

Probab=99.03  E-value=1.1e-07  Score=97.56  Aligned_cols=85  Identities=20%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++.+.++|.+...+...+++.|.++++      ++.+.++......++|..++|.+++++.+++||+..|.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            4667788888889998888888888999988754      3556788888889999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 012167          116 TATILLSIPIF  126 (469)
Q Consensus       116 ~v~~~i~~ii~  126 (469)
                      ++..++..+..
T Consensus       167 ~~~~~~~~~~~  177 (401)
T PRK11043        167 FAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHH
Confidence            77766655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.03  E-value=1.9e-07  Score=95.42  Aligned_cols=84  Identities=15%  Similarity=0.125  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST  116 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~  116 (469)
                      .+.++++..+.+++.+...+...+++.|.++++      +|.+++++.+...++|..++|.+++++.+..||+..|.+.+
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~  164 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA  164 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence            566777888899999998999999999988754      46788999999999999999999999988899999999887


Q ss_pred             HHHHHHHHHH
Q 012167          117 ATILLSIPIF  126 (469)
Q Consensus       117 v~~~i~~ii~  126 (469)
                      +..++..++.
T Consensus       165 ~~~~i~~~~~  174 (392)
T PRK10473        165 AMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHH
Confidence            7766555443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.02  E-value=3.3e-08  Score=104.29  Aligned_cols=78  Identities=23%  Similarity=0.299  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.++++..+.+++.|+..+...+++.|.++++      +|..++++++.+.++|.++++.+.+++.++++|++.|.+.
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            4677888899999999999999999999999854      4667889999999999999999999999999999999875


Q ss_pred             HHHH
Q 012167          116 TATI  119 (469)
Q Consensus       116 ~v~~  119 (469)
                      ++..
T Consensus       181 ~~~~  184 (496)
T PRK03893        181 ILPI  184 (496)
T ss_pred             HHHH
Confidence            4443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.01  E-value=7.6e-08  Score=99.96  Aligned_cols=310  Identities=11%  Similarity=0.098  Sum_probs=181.5

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-------Cc
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-------GW  108 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-------g~  108 (469)
                      +...+++...+..++...+.-+..+++.|..++++     +|.+..++...+.++|.++...+.+.+.+..       +|
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence            44555777777899999999999999999987653     3667778888888888876655555543221       57


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcc-ccccc
Q 012167          109 QWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSN  187 (469)
Q Consensus       109 ~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~~  187 (469)
                      ++.+.+.++..++..++..+.-|. ++++++++              ++                     ..++ +..+.
T Consensus       177 ~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~--------------~~---------------------~~~~~~~~~~  220 (428)
T PF13347_consen  177 RWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ--------------EK---------------------KISLRDSLRS  220 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhheeee-cccccccc--------------cc---------------------ccccccchhh
Confidence            777777777666666555444332 00000000              00                     0000 00000


Q ss_pred             cCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHH-cccCCC
Q 012167          188 VKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLG  266 (469)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~d~~~~  266 (469)
                                                    .+     ++ |.+   ..++....+.+....-..+......+. +..+ .
T Consensus       221 ------------------------------~~-----~n-r~~---~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~  260 (428)
T PF13347_consen  221 ------------------------------LF-----RN-RPF---RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G  260 (428)
T ss_pred             ------------------------------hc-----cc-chH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h
Confidence                                          00     00 111   123333334444444333333333332 2211 0


Q ss_pred             CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167          267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN  346 (469)
Q Consensus       267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~  346 (469)
                          -.+.+..+..+..++..|++.++.    ||.+ |      .+-+..|.++.+++.++..++.              
T Consensus       261 ----~~~~~~~~~~~~~~v~~~~~~~l~----~r~g-k------~~~~~~~~~~~~~~~~~~~~~~--------------  311 (428)
T PF13347_consen  261 ----LISIFMLIFFVASIVGSPLWGRLS----KRFG-K------KKVYIIGLLLAALGFLLLFFLG--------------  311 (428)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHH----HHcc-c------eeehhhhHHHHHHHHHHHHHHH--------------
Confidence                122333344455556666665554    4431 1      2345678888888888776663              


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhccccc
Q 012167          347 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNITS  419 (469)
Q Consensus       347 ~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~  419 (469)
                           +.+.+++.+..++.+++-....+...++..+..+       ++..|+++|++.+...+|..+++.+.+.+-...+
T Consensus       312 -----~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  312 -----PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             -----hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence                 1467888999999999999999999999999887       4567999999999999999999988887765443


Q ss_pred             cCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012167          420 TYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS  465 (469)
Q Consensus       420 ~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~  465 (469)
                      .+.+     ..+-++......-.+.+.+..+..++-+++.++|+-.
T Consensus       387 y~~~-----~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l~  427 (428)
T PF13347_consen  387 YDAN-----AAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPLT  427 (428)
T ss_pred             cCCC-----cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            2110     0022233344444455555555555555666777643

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.00  E-value=3.9e-07  Score=95.45  Aligned_cols=331  Identities=10%  Similarity=0.022  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh--cccC---------
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI--EDNK---------  106 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l--~~~~---------  106 (469)
                      +.+.+++.+.-++.....+...++++|..++++.    +++.+++++.+..|+|+++|+.++++.  .+.+         
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~  190 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG  190 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence            4556666667778888888999999999997632    335799999999999999999999875  2211         


Q ss_pred             ----CcchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcc
Q 012167          107 ----GWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD  182 (469)
Q Consensus       107 ----g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (469)
                          +++..|.+.++.++++.++..+.-|.+...++++.+..            . ..                    ..
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~------------~-~~--------------------~~  237 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS------------E-AA--------------------PP  237 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh------------h-cc--------------------cc
Confidence                56789999999998887776654333211000000000            0 00                    00


Q ss_pred             ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-Hc
Q 012167          183 EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TM  261 (469)
Q Consensus       183 d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~  261 (469)
                      ++.           +. +..+         ...++..    .+--|.+.+++..-...-+=|..+-+..|.++-+.- +-
T Consensus       238 ~~~-----------~~-~~~~---------~~i~~~~----~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~  292 (477)
T TIGR01301       238 SKH-----------GE-EAFF---------GELFGAF----KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGG  292 (477)
T ss_pred             ccc-----------ch-hhhH---------HHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCC
Confidence            000           00 0000         0000000    011123334444444444444455555555554321 10


Q ss_pred             ccCCC-----CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHH
Q 012167          262 NTKLG-----SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI-GTGLILSIVAMAVAALVEIKR  335 (469)
Q Consensus       262 d~~~~-----g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri-~~G~~l~~i~~~~~a~~~~~~  335 (469)
                      |.+-.     |.+. ..+-..+|.+...    ++..++.++.||.       ...++. .++.++.++|++...++..-.
T Consensus       293 ~~~~~~~y~~gvr~-G~~~l~~~s~~~~----i~s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~  360 (477)
T TIGR01301       293 SVNQGAKYDDGVRA-GAFGLMLNSVVLG----ITSIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVA  360 (477)
T ss_pred             CCcchhHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            10000     0000 1122233333333    3344444445542       222333 688889999998887764200


Q ss_pred             H---hhhhhcCCCCCCCCcchh-HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCc--chhhHHHHHHHHHHHHHHHHHHH
Q 012167          336 K---RVAVNSGLVNSSEPLPIT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPL--SMRSLATSLSWASLAMGYYFSTV  409 (469)
Q Consensus       336 ~---~~~~~~g~~~~~~~~~~s-~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~--~~~g~~~gl~~l~~~iG~~l~~~  409 (469)
                      .   .....++...    .+.. .++.+..+.+.|++-......=++++.+..|+  +-.|.+||+.+++..+...+..+
T Consensus       361 ~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl  436 (477)
T TIGR01301       361 KNSRYYDGDGESLP----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSL  436 (477)
T ss_pred             hccccccccccccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHH
Confidence            0   0000001111    1222 36677888999999999999999999999995  45699999999999999999887


Q ss_pred             hHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          410 LVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       410 l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                      ..+.+.+..+         .+      -.+.+.+-++.++++++.-++..+|
T Consensus       437 ~~g~~~~~~g---------~~------~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       437 GSGPWDQLFG---------GG------NLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHHHHHcC---------CC------CeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            7777544221         11      1234555555666666655555444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.99  E-value=1.9e-07  Score=96.60  Aligned_cols=86  Identities=10%  Similarity=0.037  Sum_probs=71.0

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++++++.++|.+..-+...+.+.|.++++      ++.+.++++..+.++|..+||.+++++.+..||++.|.+
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34678889999999999876666677788888754      356778999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHH
Q 012167          115 STATILLSIPIF  126 (469)
Q Consensus       115 ~~v~~~i~~ii~  126 (469)
                      .++..+++.+..
T Consensus       176 ~~~~~~i~~~~~  187 (413)
T PRK15403        176 IAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHHH
Confidence            888776665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.99  E-value=2.7e-07  Score=94.89  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i  114 (469)
                      +.+.+++...+.++..+...|...++..|.++++      +|.++.++..++.++|.++++.+++++.+. .||+..|.+
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i  166 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL  166 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence            3555666666678888999999999999998754      366788888999999999999999988885 599999999


Q ss_pred             HHHHHHHHHHH
Q 012167          115 STATILLSIPI  125 (469)
Q Consensus       115 ~~v~~~i~~ii  125 (469)
                      .++..++..+.
T Consensus       167 ~a~~~l~~~l~  177 (402)
T PRK11902        167 MAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHH
Confidence            88877655443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.99  E-value=2.1e-07  Score=98.40  Aligned_cols=77  Identities=21%  Similarity=0.244  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCCcc
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQ  109 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g~~  109 (469)
                      ..+.+.+++.++|.|+..|+..++++++++++      +|..+.++...+.++|.++|+.+..++.        .++||+
T Consensus       119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR  192 (490)
T PRK10642        119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR  192 (490)
T ss_pred             HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence            35888999999999999999999999999865      3555777788888888888876655442        268999


Q ss_pred             hhHHHHHHHHH
Q 012167          110 WGFGISTATIL  120 (469)
Q Consensus       110 ~~F~i~~v~~~  120 (469)
                      +.|.+.++..+
T Consensus       193 ~~f~i~~~~~l  203 (490)
T PRK10642        193 IPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHH
Confidence            99998665443

>PRK09848 glucuronide transporter; Provisional

Probab=98.97  E-value=2.7e-07  Score=96.38  Aligned_cols=91  Identities=10%  Similarity=0.033  Sum_probs=70.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc-
Q 012167          309 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS-  387 (469)
Q Consensus       309 s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~-  387 (469)
                      +..+.+.+|.++.+++.+...+..                   ..+.++.+...++.++|+.+..+...++..+.+|.+ 
T Consensus       292 g~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~  352 (448)
T PRK09848        292 GKKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE  352 (448)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            334557778888777776554321                   134566667788999999999999999999999864 


Q ss_pred             ------hhhHHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167          388 ------MRSLATSLSWASLAMGYYFSTVLVSIVNNIT  418 (469)
Q Consensus       388 ------~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t  418 (469)
                            .+|.++|++.+...+|..+++.+.+.+-...
T Consensus       353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                  5699999999999999999998887765544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.97  E-value=4.1e-08  Score=103.16  Aligned_cols=84  Identities=10%  Similarity=-0.049  Sum_probs=68.3

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC---Ccchh
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK---GWQWG  111 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~---g~~~~  111 (469)
                      .+.+.+++.+.+.+++.|...|...+.+.++++++      +|..+++++..+.++|.++++.+..++.+..   +|+..
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence            35778888899999999999999999999999875      3567788899999999999999888776643   68888


Q ss_pred             HHHHHHHHHHHHH
Q 012167          112 FGISTATILLSIP  124 (469)
Q Consensus       112 F~i~~v~~~i~~i  124 (469)
                      |.+.++..++..+
T Consensus       194 f~~~g~~~~~~~i  206 (467)
T PRK09556        194 FIFPSIIALIIGF  206 (467)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887766654433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.96  E-value=2.4e-07  Score=95.82  Aligned_cols=85  Identities=13%  Similarity=0.165  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc------cCCcc
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------NKGWQ  109 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~------~~g~~  109 (469)
                      +.+.+++++.+.++|.|...|...+.+.+.++++      +|..+.+++..+.++|..+++.+++++.+      ..||+
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr  168 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ  168 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence            3678889999999999999999999999999854      36678889999999999999999998863      46999


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 012167          110 WGFGISTATILLSIPIF  126 (469)
Q Consensus       110 ~~F~i~~v~~~i~~ii~  126 (469)
                      +.|.+.++..++..++.
T Consensus       169 ~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       169 WLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999777665544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00897 2A0118 polyol permease family

Probab=98.96  E-value=3.8e-07  Score=93.89  Aligned_cols=73  Identities=11%  Similarity=-0.015  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcchhHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa-~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      .+.+++...+.++|.+..-+...+.+.+.++++      +|.++.+++..+.++|. .+++.+++++.+.+||+..+...
T Consensus       105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~  178 (402)
T TIGR00897       105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA  178 (402)
T ss_pred             HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            566677778888888887777777788877653      46788899999999996 68999999998888966555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.94  E-value=3.2e-07  Score=95.47  Aligned_cols=73  Identities=14%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh--------cccCCcch
Q 012167           39 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI--------EDNKGWQW  110 (469)
Q Consensus        39 ~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l--------~~~~g~~~  110 (469)
                      .+++++++.++|.|..-|+..++++|.++++      +|.++.+++..+.++|..+++.+++.+        .+++||+.
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            5688899999999999999999999999865      366788888888888888877777665        25689999


Q ss_pred             hHHHHHH
Q 012167          111 GFGISTA  117 (469)
Q Consensus       111 ~F~i~~v  117 (469)
                      .|.+..+
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9987543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.93  E-value=1.6e-07  Score=97.80  Aligned_cols=83  Identities=10%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh-hcccCCcchhHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW-IEDNKGWQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~-l~~~~g~~~~F~i~  115 (469)
                      ...+++.+.+.+++.|...|.....+.|.++++      +|..++++++.+.++|..+++.+.+. +.+..+|+.+|.+.
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~  191 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP  191 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            556677788899999999898899999998865      36788999999999999999877765 44557999999998


Q ss_pred             HHHHHHHHHH
Q 012167          116 TATILLSIPI  125 (469)
Q Consensus       116 ~v~~~i~~ii  125 (469)
                      ++..++..++
T Consensus       192 ~~~~~i~~~~  201 (438)
T TIGR00712       192 AICAIIVALF  201 (438)
T ss_pred             HHHHHHHHHH
Confidence            8777665443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00896 CynX cyanate transporter

Probab=98.92  E-value=1.9e-07  Score=94.14  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC--CcchhHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK--GWQWGFG  113 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~--g~~~~F~  113 (469)
                      +.+.+++++.+.++|.|...+...+...|.+++       +|.++.++++.+.++|..+++.+++.+.+..  +|+..|.
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            356777888899999999888888888887753       3567889999999999999999999887765  3888888


Q ss_pred             HHHHHHHHH
Q 012167          114 ISTATILLS  122 (469)
Q Consensus       114 i~~v~~~i~  122 (469)
                      +.++..++.
T Consensus       159 ~~~~~~~~~  167 (355)
T TIGR00896       159 WWALPALLA  167 (355)
T ss_pred             HHHHHHHHH
Confidence            766554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.92  E-value=1.3e-07  Score=96.89  Aligned_cols=104  Identities=12%  Similarity=0.077  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167          313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  392 (469)
Q Consensus       313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~  392 (469)
                      -+.+|.++.++++...+..                     .+++++++..++.+++.........+.+.+..|++.+++.
T Consensus       286 ~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~  344 (396)
T TIGR00882       286 ALLIAGTIMSVRIIGSSFA---------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATI  344 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEe
Confidence            3567777777666543322                     2466777778899988877777777888888899998887


Q ss_pred             HHH-HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 012167          393 TSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLH  454 (469)
Q Consensus       393 ~gl-~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~  454 (469)
                      .+. +.....+|+.+++.+.+.+.+..                 .+...|.+.+++.++..++
T Consensus       345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~-----------------G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       345 YLIGFQFAKQLAMIFLSTLAGNMYDSI-----------------GFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             ehHHHHHHHHHHHHHHHHhHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHH
Confidence            665 56778899999998888876522                 1244666667766665544

>TIGR00889 2A0110 nucleoside transporter

Probab=98.90  E-value=2.3e-07  Score=96.21  Aligned_cols=147  Identities=10%  Similarity=0.101  Sum_probs=95.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  355 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~  355 (469)
                      .+++.+..++...+.+++    .+|       .+..+-+.++.++.++++.......                 ....+.
T Consensus       257 ~~~~~i~~i~~~~~~g~l----~dr-------~g~r~~l~~~~~~~~v~~~l~~~~~-----------------~~~~~~  308 (418)
T TIGR00889       257 MSLSQFSEIFFILTIPFF----LKR-------FGIKKVMLLSLVAWALRFGFFAYGD-----------------PEYFGY  308 (418)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHH-------hCcHHHHHHHHHHHHHHHHHHHHcC-----------------cchhhH
Confidence            344444444444444444    344       2223346677777777665554421                 001233


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHH-HHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH  434 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~  434 (469)
                      +.++...++.++++.+..+....++.+.+|++.||.++|+.+ ...++|+.+|+.+.+.+.+.++.         ++.  
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---------~~~--  377 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---------YGT--  377 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---------ccC--
Confidence            445567789999999999999999999999999999999997 56789999999999887653220         000  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          435 YHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       435 ~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                      .+++..|...++++++..++++++.|+
T Consensus       378 ~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       378 FDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            013456777777777777666666553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.87  E-value=8.1e-07  Score=94.28  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc------------
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------------  104 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~------------  104 (469)
                      ...+++++++.++|.|+..|....++.+.++++      +|..+.++++.+.++|.++++.++.++..            
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            578999999999999999999999999999975      46778899999999999999888765421            


Q ss_pred             -----------cCCcchhHHHHHHHHHHHHHH
Q 012167          105 -----------NKGWQWGFGISTATILLSIPI  125 (469)
Q Consensus       105 -----------~~g~~~~F~i~~v~~~i~~ii  125 (469)
                                 ..+|++.|.+.++..++..+.
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~  220 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLALYF  220 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence                       247999998877666544433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.86  E-value=6.9e-09  Score=105.06  Aligned_cols=86  Identities=13%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFG  113 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~  113 (469)
                      ...|.+.+.+.++++|.+.+.|..+++++|.|+++      +|.+.|.+|||++++|+.+|.+.++++.+..+ ||++|.
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            56899999999999999999999999999999976      58899999999999999999999999988776 999999


Q ss_pred             HHHHHHHHHHHHH
Q 012167          114 ISTATILLSIPIF  126 (469)
Q Consensus       114 i~~v~~~i~~ii~  126 (469)
                      ..++.+++..++.
T Consensus       193 ~~avl~vi~~~L~  205 (493)
T KOG1330|consen  193 GSAVLGVIVGLLV  205 (493)
T ss_pred             eehHHHHHHHHHH
Confidence            9999887765543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.86  E-value=7.9e-07  Score=88.43  Aligned_cols=88  Identities=13%  Similarity=0.049  Sum_probs=69.1

Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-------
Q 012167           33 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-------  105 (469)
Q Consensus        33 ~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-------  105 (469)
                      ...+.+.+.+++.+++.|.+..++..++++++.-++++      +.+..++.-.+..+|+++||++++.+..+       
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~   79 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM   79 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence            34578999999999999999999999999999887652      45568888889999999999999976632       


Q ss_pred             ---------CCcchhHHHHHHHHHHHHHHH
Q 012167          106 ---------KGWQWGFGISTATILLSIPIF  126 (469)
Q Consensus       106 ---------~g~~~~F~i~~v~~~i~~ii~  126 (469)
                               ..|++.|.+.++...+..+++
T Consensus        80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        80 QVATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     368888885555544433333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.84  E-value=1.3e-06  Score=89.46  Aligned_cols=56  Identities=9%  Similarity=0.024  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          361 QYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       361 ~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ..++.+++..+..+.......+.+++ +.+|+.+++.....++|..+++.+.+.+.+
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555556667777777777776 899999999999999999999999988765

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=98.83  E-value=1.6e-06  Score=90.55  Aligned_cols=66  Identities=9%  Similarity=0.060  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhccccc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNITS  419 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~  419 (469)
                      +.+.++...++.++++....+...+++.+.++       ++..|...|++.+...+|..+|+.+++.+.+..+
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34555666789999999999999999999886       4567889999999999999999988887766543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.80  E-value=6.7e-07  Score=94.31  Aligned_cols=83  Identities=6%  Similarity=0.011  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc---------cC
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------NK  106 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~---------~~  106 (469)
                      +.+.+++.+++.++|.+..-+ ....+++.++++      +|..+.++.+...|+|+.+++.+.+.+..         ..
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            356677788888888887644 455678888754      36678888888888888888777665532         25


Q ss_pred             CcchhHHHHHHHHHHHHHH
Q 012167          107 GWQWGFGISTATILLSIPI  125 (469)
Q Consensus       107 g~~~~F~i~~v~~~i~~ii  125 (469)
                      ||++.|.+.++..++..+.
T Consensus       196 gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        196 AWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            8999999988777655443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.76  E-value=3.2e-07  Score=96.56  Aligned_cols=84  Identities=15%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHH
Q 012167           39 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT  118 (469)
Q Consensus        39 ~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~  118 (469)
                      ...+.+.+++++.+.......++..|+.+ +++   +......++.|.+.++|.++|+.++|++.+.++|+..|.+.++.
T Consensus       122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l  197 (468)
T TIGR00788       122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL  197 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            33346788999999999999999999998 332   13445677899999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 012167          119 ILLSIPIF  126 (469)
Q Consensus       119 ~~i~~ii~  126 (469)
                      .++..+..
T Consensus       198 ~ll~~~~~  205 (468)
T TIGR00788       198 LLLQLFVS  205 (468)
T ss_pred             HHHHHHHH
Confidence            87764433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=5e-06  Score=87.61  Aligned_cols=65  Identities=12%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT  418 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t  418 (469)
                      +.++++...++.+++.....+...++..+.+|       ++..|.+.|++.+..-+|..+++.+.+.+.+..
T Consensus       323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34556666788999999999999999999987       566788999999999999999988888776544

>PRK10133 L-fucose transporter; Provisional

Probab=98.59  E-value=1.1e-05  Score=84.20  Aligned_cols=63  Identities=25%  Similarity=0.291  Sum_probs=49.4

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE  103 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~  103 (469)
                      .+.+.+++++.+.++|.|...+..++++.|..+++      ++....+.+.....+|..+|+.+++.+.
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778899999999999999999999999864332      2333467788888899999998877653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.56  E-value=2.3e-06  Score=93.10  Aligned_cols=253  Identities=11%  Similarity=-0.027  Sum_probs=183.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-----
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW-----  110 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~-----  110 (469)
                      +.....+.++.++++.+|.+++.+++.+++.+..++   +++++.+++|||..+.+.+.+.+........-.+..     
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~  157 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ  157 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence            377778888899999999999999999999988753   556789999999999999875554444443323332     


Q ss_pred             --hHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcccccccc
Q 012167          111 --GFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNV  188 (469)
Q Consensus       111 --~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~  188 (469)
                        .++..++.+++.++.++.....++..++.+.+...+.++........+..                     .   .. 
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~---------------------~---~~-  212 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR---------------------F---ST-  212 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh---------------------h---cc-
Confidence              34477778888888888887777666665544444555554443332100                     0   00 


Q ss_pred             CCCCCCCCCchhHHHHhhhccCCCCCCccc--cCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCC
Q 012167          189 KEKVPSQKPTEDIKFLNRALRNNPAYPIVQ--CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG  266 (469)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~  266 (469)
                      .+                   +.....|-.  .....+++++...+++.++...+.+++.+.|.......|...+++..+
T Consensus       213 ~~-------------------~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~  273 (654)
T TIGR00926       213 RS-------------------EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG  273 (654)
T ss_pred             CC-------------------cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC
Confidence            00                   000011111  122334567889999999999999999999999889999999998866


Q ss_pred             CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV  338 (469)
Q Consensus       267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~  338 (469)
                      .+...+...+.++++-.++.+++...+.+|+.++..++   ..+++++.-+.+.++++.+.+++++....+.
T Consensus       274 ~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       274 DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54445567889999999999999999989999997443   5788889999999999999999998766554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.54  E-value=1.3e-05  Score=82.82  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED----------  104 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~----------  104 (469)
                      .+.+.+.+++.+.++|.|...+..++++.+..+++      ++.+..++.....++|+.+|+.+++.+..          
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~  165 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV  165 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence            34778889999999999999999999998876543      24456778889999999999999887732          


Q ss_pred             ----------------cCCcchhHHHHHHHHHHHHHHH
Q 012167          105 ----------------NKGWQWGFGISTATILLSIPIF  126 (469)
Q Consensus       105 ----------------~~g~~~~F~i~~v~~~i~~ii~  126 (469)
                                      ..+|+..|.+.++..++..+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            2469999988777555444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=2.3e-06  Score=85.38  Aligned_cols=89  Identities=20%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+.+.+++++.+=++|.+....+-.+|++|.|+++.     +|.++.++.--.+.+|.++||.++|.+.|..|+++-|++
T Consensus       157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence            357799999999999999999999999999999864     477899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 012167          115 STATILLSIPIFLL  128 (469)
Q Consensus       115 ~~v~~~i~~ii~~~  128 (469)
                      .++.+++...+-++
T Consensus       232 L~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  232 LAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99988887665443

>PRK11462 putative transporter; Provisional

Probab=98.48  E-value=8.5e-05  Score=78.06  Aligned_cols=84  Identities=10%  Similarity=0.181  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCcc
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-------KGWQ  109 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-------~g~~  109 (469)
                      ...+++...+..++...+.-...++.++..++.  +   +|.+..++...+.++|.++++.++..+.+.       .||.
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~--~---eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDP--T---QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            344555555667788888888889999887653  2   367788889999999988887765443322       2466


Q ss_pred             hhHHHHHHHHHHHHHH
Q 012167          110 WGFGISTATILLSIPI  125 (469)
Q Consensus       110 ~~F~i~~v~~~i~~ii  125 (469)
                      ....+.++..++...+
T Consensus       184 ~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        184 GGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555554444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.46  E-value=3.9e-06  Score=84.51  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc----------c
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED----------N  105 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~----------~  105 (469)
                      +.+.++++..+.+++.+.+ +...++++|.++++      +|..+.+++..+.|+|..+++.+++.+..          +
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            4677888889999987665 45678899998754      36678888888888998888888776654          3


Q ss_pred             CCcchhH-HHHHHHHH
Q 012167          106 KGWQWGF-GISTATIL  120 (469)
Q Consensus       106 ~g~~~~F-~i~~v~~~  120 (469)
                      .+|++.| .+.++..+
T Consensus       163 ~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       163 LAWGWAFVIVPAGILL  178 (366)
T ss_pred             ccccchhHHHHHHHHH
Confidence            4899999 44344443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.42  E-value=6.3e-05  Score=79.23  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh------cccCCc
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI------EDNKGW  108 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l------~~~~g~  108 (469)
                      .+.+.+.+-+.+.|+-++..-|+....++.+|.++      ++..-++++|.+.++|..+|.+++..+      ....||
T Consensus       132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            45788888899999999999999999999999976      245567889999999999999998886      345799


Q ss_pred             chhHHHHHHHHHHHHHH
Q 012167          109 QWGFGISTATILLSIPI  125 (469)
Q Consensus       109 ~~~F~i~~v~~~i~~ii  125 (469)
                      ++.|.+.++++++..++
T Consensus       206 ~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  206 RWLFIIEGVITLVLGIV  222 (495)
T ss_pred             eeehhHHHHHHHHHHhe
Confidence            99999999888765544

>PRK03545 putative arabinose transporter; Provisional

Probab=98.42  E-value=7.1e-06  Score=83.94  Aligned_cols=136  Identities=11%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...++.++...+.    +|       .+..+-+..+.++.+++.+.+++.                     
T Consensus        47 g~~~~~~~~~~~~~~~~~g~l~----dr-------~g~r~~~~~~~~~~~~~~~~~~~~---------------------   94 (390)
T PRK03545         47 GLMLTIYAWVVALMSLPLMLLT----SN-------VERRKLLIGLFVLFIASHVLSALA---------------------   94 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----cC-------CChHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3444455555555666665553    33       233345677888888887776654                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .++++++...+++++++....|....++.+..|++.|+.++|++....++|..+++.+++.+.+.      -+|      
T Consensus        95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~------~gw------  162 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY------LGW------  162 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH------hcH------
Confidence            25677778889999999999999999999999999999999999999999999999988876531      134      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLF  457 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~  457 (469)
                           ...|++.++++++..+....
T Consensus       163 -----~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        163 -----RTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHH
Confidence                 44677777776666544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.39  E-value=0.00016  Score=73.15  Aligned_cols=88  Identities=15%  Similarity=0.110  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167          313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  392 (469)
Q Consensus       313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~  392 (469)
                      --.+|....++++....+..                  ..-+.+.+.+..+++|+|--+......+..-++++++..|+.
T Consensus       277 ~a~~G~~~~~~~f~lii~a~------------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~  338 (403)
T PF03209_consen  277 TAALGCLLGALAFALIILAG------------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLF  338 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHH
Confidence            34467777777776544432                  012456678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167          393 TSLSWASLAMGYYFSTVLVSIVNNIT  418 (469)
Q Consensus       393 ~gl~~l~~~iG~~l~~~l~~~~~~~t  418 (469)
                      +|+|...++++..++..+++.+.++.
T Consensus       339 mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  339 MGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998887754

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.36  E-value=7e-07  Score=90.71  Aligned_cols=144  Identities=17%  Similarity=0.223  Sum_probs=112.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+|.+--+.-+++.|+.+.+-+++-|           .+-|++|.++-+++.+..++..                    
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadryNR-----------~~v~~vG~~iW~~Av~~~~fs~--------------------  119 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRYNR-----------KRVIAVGIFIWTLAVFASGFSN--------------------  119 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCc-----------ceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence            455555555566788998888543332           3457899999999888877652                    


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                       ..|.+++...+.|+||...+|...+++++..|...||++++++++..-+|+.+|.+.+..+...+.     .|      
T Consensus       120 -~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W------  187 (493)
T KOG1330|consen  120 -HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW------  187 (493)
T ss_pred             -HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce------
Confidence             345566899999999999999999999999999999999999999999999999888888876542     24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAARYKY  464 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~  464 (469)
                           .+-|++.++++++.+++..++.+.=++
T Consensus       188 -----r~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  188 -----RWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             -----EEEEEeehHHHHHHHHHHHhhccCccc
Confidence                 346788899999888776666554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.36  E-value=1.7e-05  Score=82.03  Aligned_cols=143  Identities=13%  Similarity=0.137  Sum_probs=100.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..++.+++.+++.+|           +-+.+++++.+++.+..++.                     
T Consensus        46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   93 (412)
T TIGR02332        46 GLAATLFYAAYVICGIPSNIMLAIIGAR-----------RWIAGIMVLWGIASTATMFA---------------------   93 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3445555555666666777665544333           23567888888877777654                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.|++|....|....++.+..|++.|+..+|++....++|..+++.+++.+.+.....+..+|      
T Consensus        94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw------  167 (412)
T TIGR02332        94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGW------  167 (412)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch------
Confidence            24667888999999999999999999999999999999999999999999999999988776431100000135      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                           ...|++.++++++..++.+++
T Consensus       168 -----r~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       168 -----QWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             -----hHHHHHHHHHHHHHHHHHhhc
Confidence                 456666677766655544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.30  E-value=0.0007  Score=71.33  Aligned_cols=82  Identities=10%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHH
Q 012167          363 LFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYW  442 (469)
Q Consensus       363 ~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~  442 (469)
                      ++.|+.---..+..=++..++.|++..+...|+|.++.-..+.+||++.+.+.+.|+.                ..+-++
T Consensus       388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~----------------~r~g~~  451 (477)
T PF11700_consen  388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS----------------QRYGFL  451 (477)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------chhHHH
Confidence            4566666667788889999999999999999999999999999999999999876631                122355


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 012167          443 LMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       443 ~la~l~l~~~l~~~~~~~  460 (469)
                      .+.++.++.++++..+..
T Consensus       452 ~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  452 FLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHHHHHHHHHHhhccc
Confidence            566666666666655433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.28  E-value=0.00038  Score=72.72  Aligned_cols=60  Identities=5%  Similarity=-0.083  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW  101 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~  101 (469)
                      .+.+.+++..++.++| |...+...+.+.++|+++      +|..+.+++....|+|..+++++++.
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4578899999999998 667788999999999865      36678888877888888777666654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.24  E-value=0.00026  Score=70.33  Aligned_cols=85  Identities=22%  Similarity=0.379  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-CcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-g~~~~F~i  114 (469)
                      ....++.+-.++++|.+....-...++-+-|+++       .....+.|-.+.++|+.+++.+++.+.++. ||+.+..+
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            4788999999999999999999999999888864       446788899999999999999999998877 79988877


Q ss_pred             HHHHHHHHHHHHH
Q 012167          115 STATILLSIPIFL  127 (469)
Q Consensus       115 ~~v~~~i~~ii~~  127 (469)
                      =++.-++++++.+
T Consensus       171 WAl~allAl~~Wl  183 (395)
T COG2807         171 WALLALLALLIWL  183 (395)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666655555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.24  E-value=7.4e-05  Score=79.21  Aligned_cols=137  Identities=12%  Similarity=0.002  Sum_probs=101.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +|+.+...+...++.|+.+++.+++.||           +-+.+|.++.+++.+.+++.                     
T Consensus        44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a---------------------   91 (495)
T PRK14995         44 LWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS---------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            5566666667777888888876654433           34667888888887777654                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhc-cCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTD-APLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~-aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                      .|.++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+++.+.+..      +|     
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~------gw-----  160 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF------YW-----  160 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------Ch-----
Confidence            2567788889999999999999888877665 57899999999999999999999999998886521      35     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                            .+.|+....++++.+++.+..
T Consensus       161 ------r~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        161 ------GSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHh
Confidence                  345666555555555444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.23  E-value=0.00013  Score=74.84  Aligned_cols=98  Identities=10%  Similarity=0.019  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHH-HHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~-~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                      .+++|+++.-.++++---+......-++.+..|+++.++...+. .++.++|..+-+.+.+.+.+.-             
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-------------  376 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-------------  376 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------------
Confidence            35778888889999988899999999999999999998888775 5778888888777777776521             


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST  467 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~  467 (469)
                          +....|++++.+.++..++-++..++-++++.
T Consensus       377 ----G~~~tylimg~iv~~~~li~~f~l~~~~~~~~  408 (412)
T PF01306_consen  377 ----GFQHTYLIMGLIVLPFTLISAFTLKKDKKQIV  408 (412)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHS--SSSTTC
T ss_pred             ----CcHHHHHHHHHHHHHHHHHheeeecCCCcccc
Confidence                23457888888888777766666666555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.23  E-value=4.2e-05  Score=77.62  Aligned_cols=140  Identities=17%  Similarity=0.161  Sum_probs=114.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+.-.+.+.+..|++..+..++-||           +-+...+.+.+++-+.+++.                    
T Consensus        50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr-----------~lLl~~l~lFi~~n~l~alA--------------------   98 (394)
T COG2814          50 AGQLITAYALGVALGAPLLALLTGRLERR-----------RLLLGLLALFIVSNLLSALA--------------------   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            46788888999999999998875444332           22445567777888887776                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                       -|.+.++...++.+++--...+...+.+.+++|++.|+.++|+.+...+++..+|.-++.++.+.-      +|     
T Consensus        99 -p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW-----  166 (394)
T COG2814          99 -PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW-----  166 (394)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH-----
Confidence             367889999999999999999999999999999999999999999999999999988888887643      35     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                            ...|+.+++++++..+..+...+
T Consensus       167 ------R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 ------RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                  45788888888888887777776

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.22  E-value=4.8e-05  Score=76.95  Aligned_cols=140  Identities=11%  Similarity=-0.003  Sum_probs=100.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+..++..|+.+++.+++.|           .+-+.+|.++.+++.+..+..                     
T Consensus        43 g~~~~~~~~~~~~~~~~~g~l~d~~g~-----------r~~~~~~~~~~~~~~~~~~~~---------------------   90 (385)
T TIGR00710        43 QMTLTLYLLGFAAGQLLWGPLSDRYGR-----------RPVLLLGLFIFALSSLGLALS---------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCC-----------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            445556666666777777776553322           233567777777777666543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.++++....+....++.+..|++.|+.++|++.....+|..+++.+++.+.+..      +|      
T Consensus        91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~------  158 (385)
T TIGR00710        91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SW------  158 (385)
T ss_pred             ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH------
Confidence            245677788899999999999999999999999999999999999999999999999888765411      23      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                           ...|++.++++++..+..+...++
T Consensus       159 -----~~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       159 -----HAIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence                 345666666666665554444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.21  E-value=3.9e-05  Score=80.48  Aligned_cols=140  Identities=8%  Similarity=0.028  Sum_probs=101.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+...+..++..|+.+++.+++.||           +-+.+|.++.+++.+.++..                    
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------   87 (485)
T TIGR00711        39 VQWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA--------------------   87 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc--------------------
Confidence            35666677777778888888776544332           33567777777776665443                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                       .+.++++...++.+++.....|....++.+..|++.|+.++|++.....+|..+++.+++.+.+.      .+|     
T Consensus        88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~~w-----  155 (485)
T TIGR00711        88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN------YHW-----  155 (485)
T ss_pred             -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC------cCc-----
Confidence             25667888899999999999999999999999999999999999999999999999998877542      134     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                            .+.|+..+.++++..++..+..+
T Consensus       156 ------~~~f~~~~~~~~~~~~~~~~~~~  178 (485)
T TIGR00711       156 ------RWIFLINVPIGIIVVVVAFFILP  178 (485)
T ss_pred             ------eehhhhhhHHHHHHHHHHHHHcC
Confidence                  23455555555555544444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.18  E-value=0.00049  Score=70.95  Aligned_cols=127  Identities=13%  Similarity=0.154  Sum_probs=86.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167          308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  387 (469)
Q Consensus       308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~  387 (469)
                      .+..+-+.+|.+..++=+...+...             +   +.+..+..++....++|+.-.+..+++..++.+.+|++
T Consensus       270 ~g~~~ll~~a~~~~~vR~~l~a~~~-------------~---~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~  333 (400)
T PF03825_consen  270 FGIKWLLLLALVAYAVRWLLYAYFS-------------D---PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE  333 (400)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhc-------------C---CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence            4555667777777776666655541             0   01122223444456899999999999999999999999


Q ss_pred             hhhHHHHHHHHH-HHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          388 MRSLATSLSWAS-LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       388 ~~g~~~gl~~l~-~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                      .|++++|++... .++|..+|.++++.+.+.-+         .+..  .....+|.+.+++.++..+++++..|+
T Consensus       334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g---------~~~~--~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG---------ARGM--FDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---------chhh--hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999999998874 58999999888888765221         1100  012345677777777777777777554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.17  E-value=4e-05  Score=76.30  Aligned_cols=134  Identities=16%  Similarity=0.196  Sum_probs=100.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..|+.+.+.+++.+|           +-+.++.++.+++.....+.                     
T Consensus        35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------   82 (352)
T PF07690_consen   35 GLLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA---------------------   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh---------------------
Confidence            3455666666777778877776544332           34667888888875444432                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.++++....+....++.+..|++.|+..+|++....++|..+++.+++.+.+..      +|      
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~------  150 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW------  150 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH------
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc------
Confidence            134478889999999999999999999999999999999999999999999999999998876321      12      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHF  455 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~  455 (469)
                           ...|++.++++++..++.
T Consensus       151 -----~~~~~~~~~~~~~~~il~  168 (352)
T PF07690_consen  151 -----RWAFLISAILSLIAAILF  168 (352)
T ss_dssp             -----CCHHHHHHHHHHHHHHHH
T ss_pred             -----ccccccccchhhhhhhhH
Confidence                 235777777777776643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10054 putative transporter; Provisional

Probab=98.15  E-value=6.7e-05  Score=77.12  Aligned_cols=111  Identities=12%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+..++..|+.+++.+++.+|           +-+.+|.++.+++++..++..                    
T Consensus        46 g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~--------------------   94 (395)
T PRK10054         46 GYAMTIALTIGVVFSLGFGILADKFDKK-----------RYMLLAITAFASGFIAIPLVN--------------------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhHHHHHHHHHHHHHHHHHHh--------------------
Confidence            5556666677777888888886644332           235677777777776665542                    


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                       +.+.++..+.+.+.+.....+.....+.+..|++.|+..+|+.....++|..+++.+++.+.
T Consensus        95 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         95 -NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33444455667777777778888999999999999999999999999999999999988875

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.14  E-value=0.00011  Score=75.42  Aligned_cols=111  Identities=14%  Similarity=0.059  Sum_probs=85.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+..++..++.+++.+++.+|           +-+.++.++.+++.+..++.                     
T Consensus        53 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  100 (406)
T PRK11551         53 GWAFSAGILGLLPGALLGGRLADRIGRK-----------RILIVSVALFGLFSLATAQA---------------------  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence            4556666677777777777776644333           23556666666665554433                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      .+.++++...++.+++.....+...+.+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus       101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  163 (406)
T PRK11551        101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA  163 (406)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            256677888899999999999999999999999999999999999999999999988876654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.13  E-value=0.00012  Score=62.00  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 012167          277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL  356 (469)
Q Consensus       277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~  356 (469)
                      ....+..++..|+.+++.++..+           .+-+..+..+.+++.+.....                     .+.+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~   52 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGR-----------KPVLLVGLFIFVLSTAMFALS---------------------SNIT   52 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcch-----------hHHHHHHHHHHHHHHHHHHHh---------------------ccHH
Confidence            34455666777777766543322           233555666666665554432                     2355


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          357 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ++....++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus        53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            666778999999999999999999999999999999999999999999999988887653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.13  E-value=0.0001  Score=73.68  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=89.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+..++..|+.+++.+++.||           +-+.++.++.+++.+..++....                ..
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~----------------~~   89 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL----------------GG   89 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc----------------CC
Confidence            4556667777778888888876654433           23556666666666555544210                01


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.+++....++.+++..+..|...+++.+..|++.|+..+|+......+|..+++.+++.+.+
T Consensus        90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  153 (365)
T TIGR00900        90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA  153 (365)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677788889999999999999999999999999999999999999999999999999887754

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.12  E-value=0.00011  Score=75.09  Aligned_cols=136  Identities=10%  Similarity=0.092  Sum_probs=100.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++..+.+.+..++..|+.+++.+++.           ..+-+.+|.++.+++.+.+++.                     
T Consensus        41 g~~~s~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~l~~~~---------------------   88 (382)
T PRK10091         41 GHMISYYALGVVVGAPIIALFSSRYS-----------LKHILLFLVALCVIGNAMFTLS---------------------   88 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHccCc-----------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            55667777888888888887754332           2234667888888877776654                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.+++....++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+++.+.+..      +|      
T Consensus        89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------gw------  156 (382)
T PRK10091         89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF------SW------  156 (382)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc------cH------
Confidence            256778888999999999988988899999999999999999999999999999988877765311      24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLF  457 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~  457 (469)
                           ...|++.++++++..+..+.
T Consensus       157 -----r~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        157 -----RYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHH
Confidence                 34566666666655543333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.12  E-value=0.0001  Score=75.87  Aligned_cols=107  Identities=15%  Similarity=0.039  Sum_probs=82.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 012167          277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL  356 (469)
Q Consensus       277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~  356 (469)
                      ....+..++..|+.+++.+++.+|           +-+..|.++.+++++.+++.                     .+.+
T Consensus        53 ~~~~l~~~~~~~~~G~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~---------------------~~~~  100 (400)
T PRK11646         53 GLRQFIQQGLGIFGGAIADRFGAK-----------PMIVTGMLMRAAGFATMAIA---------------------HEPW  100 (400)
T ss_pred             HHHHHHHHHHHhhhhHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHh---------------------ccHH
Confidence            333444455566666665533322           23667888888877776543                     2467


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          357 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      +++...++.++++.+..|...+.+.+.+|++.|+..+|+.....++|..+|+.+++.+.
T Consensus       101 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        101 LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888999999999999999999999999999999999999999999999999988775

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.12  E-value=0.00016  Score=74.21  Aligned_cols=111  Identities=11%  Similarity=0.025  Sum_probs=87.8

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      +..+...+...+..|+...+.++.           ...+-+..+.++.+++.+..++.                     .
T Consensus        59 ~~~~~~~~~~~~~~~~~g~l~Dr~-----------grr~~~~~~~~~~~~~~~~~~~~---------------------~  106 (394)
T PRK10213         59 QSVTVTAFVAMFASLFITQTIQAT-----------DRRYVVILFAVLLTLSCLLVSFA---------------------N  106 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc-----------CcHHHHHHHHHHHHHHHHHHHHH---------------------C
Confidence            344566777777777777765433           22244677888888777665543                     3


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      +.++++...++.+++.....|....++.+..|++.|+..+|++....++|..+++.+++.+.+
T Consensus       107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~  169 (394)
T PRK10213        107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE  169 (394)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            577888888999999999999999999999999999999999999999999999999988764

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.09  E-value=0.00011  Score=80.37  Aligned_cols=87  Identities=11%  Similarity=0.098  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC---------
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK---------  106 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~---------  106 (469)
                      ....++++.++.++|.+...|...+++.|.++++      +|..++++++.+.++|.++|+++++++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            3567889999999999999999999999999875      3667899999999999999999999887543         


Q ss_pred             -------------CcchhHHHHHHHHHHHHHHHHh
Q 012167          107 -------------GWQWGFGISTATILLSIPIFLL  128 (469)
Q Consensus       107 -------------g~~~~F~i~~v~~~i~~ii~~~  128 (469)
                                   +|+.+|.+.++..++..+.+++
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         2888999988777665554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.06  E-value=0.0015  Score=68.41  Aligned_cols=88  Identities=18%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHH-H-hhcccCCcchhH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV-V-WIEDNKGWQWGF  112 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~-~-~l~~~~g~~~~F  112 (469)
                      .+..++.+|+.+.++..|.......-++.+.-|++      .|...=...-.++++|.+++..++ + .++..-.|++.+
T Consensus       114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~  187 (485)
T KOG0569|consen  114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL  187 (485)
T ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence            45788999999999999999999999998877654      344444456678889998885543 3 455667899999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 012167          113 GISTATILLSIPIFLL  128 (469)
Q Consensus       113 ~i~~v~~~i~~ii~~~  128 (469)
                      .++.+..++.++...+
T Consensus       188 ~~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  188 AFPLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9988877776665544

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.06  E-value=0.00017  Score=75.11  Aligned_cols=135  Identities=12%  Similarity=-0.011  Sum_probs=95.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..|+.+++.+++.+|           +-+.+++++.+++.+..++.                     
T Consensus        61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  108 (434)
T PRK11663         61 GLLATLFYITYGVSKFVSGIVSDRSNAR-----------YFMGIGLIATGIINILFGFS---------------------  108 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcCCc-----------hhHHHHHHHHHHHHHHHHHH---------------------
Confidence            4445555666667777777765543322           23567777777777665553                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.+.++..+++.++++....+.....+.+..|++.||..+|++....++|..+++.+.+.+.+..      +|      
T Consensus       109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~------gw------  176 (434)
T PRK11663        109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY------GW------  176 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------cH------
Confidence            245556667788899998888999999999999999999999999999999999998888765421      24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFL  456 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~  456 (469)
                           .+.|++.++++++..+...
T Consensus       177 -----~~~f~~~~i~~~~~~~~~~  195 (434)
T PRK11663        177 -----RYGMMIAGIIAIVVGLFLC  195 (434)
T ss_pred             -----HHHHHHHHHHHHHHHHHHH
Confidence                 4456666666555544333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.05  E-value=0.00011  Score=76.08  Aligned_cols=136  Identities=9%  Similarity=0.077  Sum_probs=94.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  355 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~  355 (469)
                      .++..+...+..++.+.+.+++.||           +-+..|.++.+++.+..++.                     .+.
T Consensus        57 ~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a---------------------~~~  104 (413)
T PRK15403         57 VSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFT---------------------TSM  104 (413)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHc---------------------CCH
Confidence            3444445555666666665544332           34566777777766665543                     256


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY  435 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~  435 (469)
                      ++++...+++|+++.+..+.....+.+..|++.++..+|++.....+|..+++.+++.+.+.      .+|         
T Consensus       105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~------~gw---------  169 (413)
T PRK15403        105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF------VHW---------  169 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCH---------
Confidence            77888899999999887787888888899999999999999999999999999988776531      134         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          436 HLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       436 ~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                        ...|+..+++.++..+..+...+
T Consensus       170 --~~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        170 --KVLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhCC
Confidence              45677777776666554443333

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.04  E-value=9.1e-05  Score=74.50  Aligned_cols=137  Identities=14%  Similarity=0.111  Sum_probs=102.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+..++..|+.+++.+++.||           +-+.++.++.+++....++.                     
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   79 (399)
T TIGR00893        32 GYVFSAFSWGYVVGQFPGGWLLDRFGAR-----------KTLAVFIVIWGVFTGLQAFA---------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCcc-----------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence            5666777777788888888876655433           12445666666666665554                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+.+.+.+..      +|      
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------  147 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW------  147 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc------
Confidence            256778888999999999999999999999999999999999999999999999998888654311      24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                           .+.|+..++++++..+..++.
T Consensus       148 -----~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       148 -----QWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             -----hHHHHHHHHHHHHHHHHhhhe
Confidence                 345666677666665554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.02  E-value=0.00019  Score=73.02  Aligned_cols=112  Identities=16%  Similarity=0.139  Sum_probs=88.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+...+..|+.+.+.+++.||           +-+.++.++.+++.+..++.                     
T Consensus        50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   97 (405)
T TIGR00891        50 ASLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFA---------------------   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            4566677777778888888887655433           23556777777766665543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.+++....++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.+
T Consensus        98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2466677789999999999999999999999999999999999999999999999988877653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.99  E-value=0.00045  Score=70.64  Aligned_cols=138  Identities=14%  Similarity=0.115  Sum_probs=94.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+...+..|+.+++.+++.||           +-+..+.++.+++.+..++.                     
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  104 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA---------------------  104 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            3445566666777788887776644322           23556666666666555433                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.+..      +|      
T Consensus       105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------  171 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GL------  171 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH------
Confidence            2466777788888988765 4677788889999999999999999999999999998888765421      23      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                           ...|++.+++.++..+..+...+
T Consensus       172 -----~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        172 -----RPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhc
Confidence                 34566667766666554444433

>PRK10504 putative transporter; Provisional

Probab=97.99  E-value=0.0003  Score=73.82  Aligned_cols=139  Identities=12%  Similarity=0.101  Sum_probs=96.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      ++.+...+...+..|+.+++.+++.+|           +-+..+.++.+++.+..++.                     .
T Consensus        49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------~   96 (471)
T PRK10504         49 MVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS---------------------G   96 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence            444444455566777777776544333           23445666666666554432                     2


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      +.++++...++++++.....|.....+.+..|++.++..+|+......+|..+++.+++.+.+..      +|       
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~------gw-------  163 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA------SW-------  163 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc------cH-------
Confidence            45667778899999999999999999999999999999999999999999999999988776421      24       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                          .+.|++.+.++++..+......++
T Consensus       164 ----~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        164 ----HWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence                445666665555555544444333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.0023  Score=66.46  Aligned_cols=86  Identities=8%  Similarity=0.026  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC------
Q 012167          312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP------  385 (469)
Q Consensus       312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP------  385 (469)
                      +-+.+|.++.+++.+...+..                   ..+.++.+...++.++|-....+..++++.+...      
T Consensus       303 ~~~~~~~~~~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T  363 (467)
T COG2211         303 KLFLIGLLLLAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT  363 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence            446778888888887777652                   2345666667788888888888998998888655      


Q ss_pred             -cchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          386 -LSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       386 -~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                       ++..|.+.|...+..=+|..+++.+.+++-.
T Consensus       364 G~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         364 GVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5667888999888888888888877776654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=3.1e-05  Score=77.47  Aligned_cols=147  Identities=11%  Similarity=0.134  Sum_probs=118.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 012167          271 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP  350 (469)
Q Consensus       271 p~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~  350 (469)
                      .-+++.+.-.++-++..|+.+.+.++...           ..-|.+|++++..+-++.++.+                  
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy-----------~ipm~~Gl~vmf~sTilFafg~------------------  157 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGY-----------KIPMVAGLFVMFLSTILFAFGN------------------  157 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhcc-----------ccHHHHHHHHHHHHHHHHHHcc------------------
Confidence            34566666677777777777777653332           2347789999888888887763                  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch-hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167          351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM-RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG  429 (469)
Q Consensus       351 ~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~-~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~  429 (469)
                         |++.++.+..++|+|..+.+..+++++++.-|++. ||.+||.-.-+.++|..+|+.+++++++.-++         
T Consensus       158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk---------  225 (464)
T KOG3764|consen  158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK---------  225 (464)
T ss_pred             ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC---------
Confidence               45578899999999999999999999999999977 59999999999999999999999999875431         


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167          430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS  466 (469)
Q Consensus       430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~  466 (469)
                              ..=|+++++++++.+.+-+++.+.++.++
T Consensus       226 --------~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  226 --------SAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             --------cCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence                    12389999999999998888888877666

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.95  E-value=0.001  Score=67.30  Aligned_cols=85  Identities=13%  Similarity=0.130  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC---cchhHHH
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGI  114 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g---~~~~F~i  114 (469)
                      +.+.+.-++.+++.|-| ....+++..+||+++      +-.+..++= +.|+|..+..+++|.+....|   |+.+-.+
T Consensus       106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i  177 (417)
T COG2223         106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI  177 (417)
T ss_pred             HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            55666666677766555 555677888999763      446667666 889999999999999999999   9988888


Q ss_pred             HHHHHHHHHHHHHhcC
Q 012167          115 STATILLSIPIFLLGS  130 (469)
Q Consensus       115 ~~v~~~i~~ii~~~~~  130 (469)
                      -.+.++++.+.+++..
T Consensus       178 ~~~~l~v~~v~~~~~~  193 (417)
T COG2223         178 YVVALAIAAVLAWLGM  193 (417)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888887777653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.93  E-value=0.00025  Score=73.97  Aligned_cols=88  Identities=20%  Similarity=0.140  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST  116 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~  116 (469)
                      .....+.+.+..+|.....-...++..+.-+++.. +   +...-++.|.+..+|++++..++|++.++.+++..|.+++
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-~---~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPE-S---RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-h---hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence            33445566778889999999999999988765532 2   4455677899999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHh
Q 012167          117 ATILLSIPIFLL  128 (469)
Q Consensus       117 v~~~i~~ii~~~  128 (469)
                      +.-.+..+..++
T Consensus       162 ~~~~l~~~~~~~  173 (433)
T PF03092_consen  162 ALPLLMLIVALF  173 (433)
T ss_pred             HHHHHHHHHHHH
Confidence            776666554333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.91  E-value=0.00048  Score=70.36  Aligned_cols=136  Identities=16%  Similarity=0.074  Sum_probs=96.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      +..++..+..++..|+.+++.+++.||           +-+.+|.++.+++.......                     .
T Consensus        42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~---------------------~   89 (392)
T PRK10473         42 IAFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA---------------------E   89 (392)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence            444555556667778888887654332           23556777777766655443                     2


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      +.++++...++++++..+..+..+..+.+..|++.|+..+|+++....+|..+++.++..+.+.      .+|       
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~------~g~-------  156 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK------FPW-------  156 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------cCh-------
Confidence            4566777889999999999999999999999999999999999999999999998888776431      124       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                          ...|++.++++++..++.+..
T Consensus       157 ----~~~~~~~~~~~~i~~~~~~~~  177 (392)
T PRK10473        157 ----QSLFYTMAAMGILVLLLSLFI  177 (392)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHH
Confidence                345666666666655544333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.87  E-value=0.00076  Score=69.27  Aligned_cols=134  Identities=13%  Similarity=0.075  Sum_probs=90.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167          275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  354 (469)
Q Consensus       275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s  354 (469)
                      ..+...+...+..|+.+.+.+++.||           +-+.++.++.+++.+..+..                     .+
T Consensus        53 ~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------~~  100 (406)
T PRK15402         53 SMTAYLAGGMFLQWLLGPLSDRIGRR-----------PVMLAGVAFFILTCLAILLA---------------------QS  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------cc
Confidence            34455555556666777665544322           23556666666666555443                     14


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167          355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH  434 (469)
Q Consensus       355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~  434 (469)
                      .++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+++.+.+.      .+|        
T Consensus       101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~~w--------  166 (406)
T PRK15402        101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV------LPW--------  166 (406)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCc--------
Confidence            556777889999999988899999999999999999999988888888888888887766532      134        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 012167          435 YHLERFYWLMCILGGLNFLHFLF  457 (469)
Q Consensus       435 ~~l~~~f~~la~l~l~~~l~~~~  457 (469)
                         ...|++.++++++..+....
T Consensus       167 ---~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        167 ---RGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHH
Confidence               23566666666665554333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.87  E-value=0.0052  Score=66.03  Aligned_cols=87  Identities=15%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+...+..|..+.++|.|... .....++|..+.+      .|..++.+..+..-+...+++.++..+..+-+|||.|++
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~  201 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYI  201 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHH
Confidence            446678889999999987765 4455678888653      233333333333223333455666556666799999999


Q ss_pred             HHHHHHHHHHHHHh
Q 012167          115 STATILLSIPIFLL  128 (469)
Q Consensus       115 ~~v~~~i~~ii~~~  128 (469)
                      .++...++++...+
T Consensus       202 ~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  202 FIIWSGIALVLIFF  215 (599)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888887765444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00895 2A0115 benzoate transport

Probab=97.86  E-value=0.00017  Score=72.97  Aligned_cols=112  Identities=15%  Similarity=0.084  Sum_probs=84.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+..++..++.+++.+++.||           +-+.+|.++.+++.+..++.                     
T Consensus        55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------  102 (398)
T TIGR00895        55 GFLFSAGLIGMAFGALFFGPLADRIGRK-----------RVLLWSILLFSVFTLLCALA---------------------  102 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            3445555556666667777665544332           23556777677666665543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.++++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus       103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  166 (398)
T TIGR00895       103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP  166 (398)
T ss_pred             cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence            2456677788999999999999999999999999999999999999999999999988877653

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.84  E-value=0.0033  Score=65.49  Aligned_cols=85  Identities=9%  Similarity=0.014  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHH--
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG--  113 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~--  113 (469)
                      +...+.+..++.|+++|..- +....+..+++++      +|.++.+++..+.++|.++++++++++. .+||+.-+.  
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln  185 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence            57888999999999999999 9999999999964      4678899999999999999999999954 578885544  


Q ss_pred             -HHHHHHHHHHHHHHh
Q 012167          114 -ISTATILLSIPIFLL  128 (469)
Q Consensus       114 -i~~v~~~i~~ii~~~  128 (469)
                       ++...+.+++++-++
T Consensus       186 ~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       186 IISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence             455555566555433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.83  E-value=0.00097  Score=73.80  Aligned_cols=111  Identities=12%  Similarity=0.038  Sum_probs=85.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+..++..++.+++.+++.||           +-+.+++++.+++.++.++.                     
T Consensus       205 g~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa---------------------  252 (742)
T TIGR01299       205 GMLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV---------------------  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4556666677777777777776655443           23556666666666555543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      .+.++++...++.+++.....|....++.+.+|++.||..++++.....+|..+++.++..+.
T Consensus       253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            246677888999999999999999999999999999999999999999999999887765543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.83  E-value=0.0014  Score=65.91  Aligned_cols=111  Identities=19%  Similarity=0.169  Sum_probs=82.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+...+..++..|+.+++.+++.+|           +-+.++.++.+++.+..++..                   
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~-------------------   88 (366)
T TIGR00886        39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV-------------------   88 (366)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            45667777778888888888886654332           346678888888877766542                   


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  414 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  414 (469)
                       .+.++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+.+.+
T Consensus        89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             15666777889999987655 55688999999999999999999877777777776666544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.83  E-value=0.0011  Score=67.44  Aligned_cols=112  Identities=12%  Similarity=-0.016  Sum_probs=88.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+...+...+..|+.+++.++..+|           +-+.+|.++.++++...++.                    
T Consensus        43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~--------------------   91 (381)
T PRK03633         43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM--------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            35666777777777788888776655443           34667888888777766554                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                       .|.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+++.+.+.+.
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             246677788999999999999988888889999999999999999999999999999988765

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.82  E-value=0.00064  Score=69.74  Aligned_cols=111  Identities=17%  Similarity=0.074  Sum_probs=88.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+.+.+...+..|+.+++.+++.+|           +-+..|+++.+++.+..++.+                   
T Consensus        46 ~g~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a~-------------------   95 (393)
T PRK09705         46 AALLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELYP-------------------   95 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHCc-------------------
Confidence            35566666777778888888876654433           457789999999998887652                   


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                        +.++++...++.|+|+....+...+.+.+..| +.|+.++|++......|..+++.+++.+.
T Consensus        96 --~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         96 --QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             --chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              45567778999999999999999999998887 67999999999988889999888887654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.82  E-value=6.4e-05  Score=75.44  Aligned_cols=138  Identities=14%  Similarity=0.001  Sum_probs=98.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..++.+++.+++.+|           +-+.+|.++.+++.+..++.                     
T Consensus        33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   80 (379)
T TIGR00881        33 GLLLSSFSIAYGISKFVMGSVSDRSNPR-----------VFLPIGLILCAIVNLFFGFS---------------------   80 (379)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhCCe-----------ehhHHHHHHHHHHHHHHHHh---------------------
Confidence            4556666667777777777776544332           23567777777777776654                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHH-HhHhhhccccccCCCCCCCcCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFST-VLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~-~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                      .+.++++...++.+++..+..|.....+.+..|++.|+..+|++.....+|..+++ .+...+...      .+|     
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~-----  149 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW-----  149 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc-----
Confidence            24567778889999999999999999999999999999999999999999999998 455444321      124     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFWA  459 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~  459 (469)
                            ...|++.++++++..++.+...
T Consensus       150 ------~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881       150 ------HWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             ------hhHHHHHHHHHHHHHHHHheee
Confidence                  2346666666666555554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.82  E-value=0.00048  Score=68.11  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=89.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++..+...+..++..|+.+++.++..||           +-+.+|.++.+++.+...+.                     
T Consensus        37 ~~~~~~~~~~~~~~~~~~g~~~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   84 (352)
T cd06174          37 GLIVSAFSLGYALGSLLAGYLSDRFGRR-----------RVLLLGLLLFALGSLLLAFA---------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCCc-----------hhhHHHHHHHHHHHHHHHHh---------------------
Confidence            4556666677777788888876654332           23567777777777766554                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.+++....++.+++..+..+....+..+..|++.|+..+|+......+|..+++.+.+.+.+
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2466778889999999999999999999999999999999999999999999999999887764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.81  E-value=0.00042  Score=71.71  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=84.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..|+.+++.+++.||           +-+.++.++.+++.+..++..                  ..
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~------------------~~  124 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAA------------------FA  124 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhc------------------cc
Confidence            4455566666667777777776544333           335677777777776665442                  12


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV  411 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~  411 (469)
                      .+.++++...++.++|+....+....++.+..|++.|+.++|++.....+|..+++.+.
T Consensus       125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            24457778899999999999999999999999999999999999999999999999887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.81  E-value=0.00045  Score=69.89  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=97.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+...+..++.+.+.+++.|           .+-+.+|.++.+++....++.+                    
T Consensus        29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~-----------~~~~~~~~~~~~i~~~~~~~~~--------------------   77 (377)
T PRK11102         29 QMTLSAYILGFAIGQLFYGPMADSFGR-----------KPVILGGTLVFALAAVACALAQ--------------------   77 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHhhcCC-----------hHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence            334455566666667777666543322           2346677777777777665542                    


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                       +.+.++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+++.+.+..      +|      
T Consensus        78 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------  144 (377)
T PRK11102         78 -TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW------  144 (377)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch------
Confidence             34556677899999999999999999999999999999999999999999999998887765421      23      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                           ...|++.++++++..++.....+
T Consensus       145 -----~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102        145 -----HAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence                 34566666666666554443333

>PRK03699 putative transporter; Provisional

Probab=97.79  E-value=0.0011  Score=68.04  Aligned_cols=135  Identities=13%  Similarity=0.064  Sum_probs=93.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..++.+++.+++.+|           +-+..+.++.+++.+..++.                     
T Consensus        45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~---------------------   92 (394)
T PRK03699         45 SNTFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFS---------------------   92 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            3445555666667777777776554433           33556777777766665543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+.+.+....     .+|      
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~gw------  161 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS-----IEW------  161 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccH------
Confidence            245667778899999999888889999999999999999999998888899999888876543211     134      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHF  455 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~  455 (469)
                           ...|...+++.++.+++.
T Consensus       162 -----~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        162 -----YWVYACIGLVYVAIFILT  179 (394)
T ss_pred             -----HHHHHHHHHHHHHHHHHH
Confidence                 345666666665554443

>PRK12382 putative transporter; Provisional

Probab=97.77  E-value=0.00094  Score=68.19  Aligned_cols=120  Identities=12%  Similarity=0.066  Sum_probs=86.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+.+...+...+..|+.+++.+++.||           +-+.+|.+..+++.+...+...     .        +....
T Consensus        54 g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~-----~--------~~~~~  109 (392)
T PRK12382         54 GIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAI-----L--------PVSAP  109 (392)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhc-----c--------ccchh
Confidence            4556677777788889999887765443           2345565555544332211100     0        00012


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.++++...++.|+++....+...+.+.+..|++.|+.++|.+.....+|..+++.+++.+.+
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677788889999999999999999999999999999999999999889999999988887653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.014  Score=59.06  Aligned_cols=65  Identities=15%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167           34 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED  104 (469)
Q Consensus        34 ~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~  104 (469)
                      ......|.+++.+++.|.|..+...++++++.-+++..   .+|   .+.--...-+|++++|.+++++-.
T Consensus       101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a---~~r---lnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA---AFR---LNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH---HHH---HHHHHHhhhhHHHHHHHHHHHHHH
Confidence            35578889999999999999999999999999887532   223   455566678999999999998866

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.75  E-value=0.00073  Score=68.86  Aligned_cols=90  Identities=12%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      +.++++...++.|+||.. .+.....+.+..|++.|++++|++.....+|..+++.++..+.+.      .+|       
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW-------  143 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL-------  143 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence            678899999999999986 456666678999999999999999999999999999998887642      246       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                          ...|+..++++++..++.++..+.
T Consensus       144 ----r~~f~~~~~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       144 ----QLLIIPIAAVAAAGIILVLAALPA  167 (368)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence                346777777777766655554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.73  E-value=0.0015  Score=67.46  Aligned_cols=112  Identities=13%  Similarity=0.145  Sum_probs=87.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++..++..+..++..|+.+++.+++.||           +-+.+|.++.+++.+..++.                     
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------  103 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLLADKFGRK-----------PLMMWSIVAYSVGTGLSGLA---------------------  103 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4455666667777777777776543322           34667888888877776654                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.++++...++.|+++....+....++.+..|++.|+.++|++....++|..+++.+...+.+
T Consensus       104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~  167 (426)
T PRK12307        104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE  167 (426)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence            2466778889999999999999999999999999999999999999999999999888776543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.73  E-value=0.00058  Score=72.06  Aligned_cols=142  Identities=11%  Similarity=0.003  Sum_probs=99.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHH-hhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p-~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      +.+.+...+...+..++.+++.++ +.+|           +-+.+|.++.+++++..++..                   
T Consensus        51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~-----------~~l~~~~~~~~~g~~~~~~~~-------------------  100 (475)
T TIGR00924        51 FIIFGAYSALVYLLTSVGWWFGDRVWGTK-----------KTMVLGGIVLMLGHFMLAMSI-------------------  100 (475)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHhcc-------------------
Confidence            344455555556666666666554 2222           346778888888877766531                   


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch---hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM---RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF  428 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~---~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~  428 (469)
                        +.+++....++.++|+.+..|....++.++.|++.   |+...++++...++|..+|+.+++.+.+..      +|  
T Consensus       101 --~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~--  170 (475)
T TIGR00924       101 --YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY--  170 (475)
T ss_pred             --cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch--
Confidence              34456667788999999999999999999998754   888999999999999999999998876411      23  


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          429 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       429 ~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                               ...|.+.++.++++.+.++...+.++
T Consensus       171 ---------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       171 ---------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence                     45566666666666666666655553

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.71  E-value=0.00018  Score=75.63  Aligned_cols=146  Identities=10%  Similarity=-0.153  Sum_probs=97.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..|+.+++.+++.+           .+-+.+++++.+++.+..+....                ...
T Consensus        67 g~~~s~~~~~~~~~~~~~G~l~Dr~g~-----------r~~l~~~~~~~~~~~~~~~~~~~----------------~~~  119 (467)
T PRK09556         67 GMIGLGFSITYGVGKTLVGYYADGKNT-----------KQFLPFLLILSAICMLGFGASLG----------------SGS  119 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhhccCc-----------cchHHHHHHHHHHHHHHHHHHHh----------------ccc
Confidence            344555555556677777777553322           23466777777766655554310                011


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.+.++...++.|++|.+..|.....+.+..|++.||.++|++.....+|..+++.+.........   ..+|      
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~---~~~~------  190 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF---DGHV------  190 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc---cCcc------
Confidence            3567788889999999999999999999999999999999999999999999999887755432100   0123      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWA  459 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~  459 (469)
                           ...|...++++++.+++.+++.
T Consensus       191 -----~~~f~~~g~~~~~~~i~~~~~~  212 (467)
T PRK09556        191 -----IGMFIFPSIIALIIGFIGLRYG  212 (467)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHhC
Confidence                 2345666766666655554443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.0013  Score=69.76  Aligned_cols=110  Identities=12%  Similarity=0.058  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167          313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  392 (469)
Q Consensus       313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~  392 (469)
                      -..++++..+++.+++.+.                     .+.+-++..-++.|+..............++.+.+.-+..
T Consensus       367 ~~~~~ll~~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a  425 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNA  425 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchH
Confidence            3556666666666454443                     2344566666777887777777777888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          393 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA  459 (469)
Q Consensus       393 ~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~  459 (469)
                      .|+..+..+++.++|+-+.+.+.+.++                .+++.|...++..+++++++++..
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg----------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLYDITG----------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeeeeccC----------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999999988776553                134566677777777776666655

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.68  E-value=0.002  Score=65.77  Aligned_cols=112  Identities=10%  Similarity=-0.015  Sum_probs=81.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++..+...+..++..|+.+.+.+++.||           +-+.++.++.+++.+...+.                     
T Consensus        46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~---------------------   93 (394)
T PRK11652         46 QAVMAAYLLTYGLSQLFYGPLSDRVGRR-----------PVILVGMSIFILGTLVALFA---------------------   93 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            3445555666666777777776544332           23556777666666554432                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.++++...++.+++.....+...++..+..|++.++..++++.+...+|..+++.+.+.+.+
T Consensus        94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  157 (394)
T PRK11652         94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT  157 (394)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2456677788999999888888888999999999999999999999999999999988877653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.68  E-value=0.0025  Score=65.87  Aligned_cols=115  Identities=13%  Similarity=0.031  Sum_probs=89.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+...+..++..|+..++.+++.+|           +-+.+|+++.+++.+......                  .
T Consensus        40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----------~~~~~g~~l~~~g~~l~~~~~------------------~   90 (410)
T TIGR00885        40 AALVQSAFYGGYFIMAIPAAIFMKKLSYK-----------AGILLGLFLYALGAFLFWPAA------------------E   90 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH------------------h
Confidence            35667777778888888887775544332           447788888888876654321                  0


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      ..+.++++...++.++|..+..+....++.+.+|++.++..+++.....++|..+++.+...+.
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1256667778899999999999999999999999999999999999999999999998887664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.67  E-value=0.001  Score=66.53  Aligned_cols=137  Identities=17%  Similarity=0.109  Sum_probs=95.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++..+...+...+..|+.+.+.+++.||           +-+.+|.++.+++.+.+++.+                    
T Consensus        41 g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~--------------------   89 (377)
T TIGR00890        41 AIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD--------------------   89 (377)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH--------------------
Confidence            4556667777778888888876655443           235577888888777766552                    


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                       +.+.+....++.++++....+.....+.+..|+ .|+.+++++....++|..+++.+...+.+.      .+|      
T Consensus        90 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~------  155 (377)
T TIGR00890        90 -SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV------  155 (377)
T ss_pred             -HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH------
Confidence             455666777899999998888888888888875 599999999999999988765555443320      123      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWA  459 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~  459 (469)
                           ...|++.++++++..+..+++.
T Consensus       156 -----~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       156 -----PAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhe
Confidence                 4567777777776665544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.67  E-value=0.00042  Score=72.66  Aligned_cols=139  Identities=16%  Similarity=0.135  Sum_probs=95.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      .+.+...+..++..++.+++.+++.+|           +-+.++.++.+++.+...+..                   ..
T Consensus        80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------~~  129 (465)
T TIGR00894        80 LILSSHFYGQIIIQIPVGYLAGKYVFK-----------WSIGIGMFLSSVISIVIPWAA-------------------GG  129 (465)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHHHH-------------------Hc
Confidence            344444455556666666665544332           235566666666655543321                   12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      +.++++...+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+.+.+.+..     .+|       
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw-------  197 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW-------  197 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC-------
Confidence            45678889999999999999999999999999999999999999999999999999988775421     135       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                          ...|.+.++++++..++++..
T Consensus       198 ----~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       198 ----PMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             ----CeehhhhhHHHHHHHHHHHHH
Confidence                224555666666555544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.67  E-value=0.0016  Score=67.87  Aligned_cols=144  Identities=13%  Similarity=-0.008  Sum_probs=94.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+...+..++.+++.+++.+|           +-+.+|.++.+++.+.++....                 ..
T Consensus        64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~~-----------------~~  115 (438)
T TIGR00712        64 GFALSAISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILSAAVMLLMGFVPW-----------------AT  115 (438)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCCc-----------eehHHHHHHHHHHHHHHhcccc-----------------cc
Confidence            3444555555556666666665433222           2355677777777666544310                 01


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.+.+....++.++++....+...+.+.+..|++.||..+|+++...++|..+++.+........     .+|      
T Consensus       116 ~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w------  184 (438)
T TIGR00712       116 SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW------  184 (438)
T ss_pred             chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh------
Confidence            244556677888999999888888999999999999999999999999999998887765432211     124      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                           ...|++.++++++..++.+++.+
T Consensus       185 -----~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       185 -----HAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhcc
Confidence                 34567777777666554444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.65  E-value=0.004  Score=62.39  Aligned_cols=60  Identities=8%  Similarity=0.046  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          357 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+...-.+.++.-....+....++.+..|.+.||..+|+.....+++..+||++.+....
T Consensus       354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            455667888899999999999999999999999999999999999999999999977654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.64  E-value=0.00078  Score=71.37  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHH-hhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHH
Q 012167          282 FILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL  360 (469)
Q Consensus       282 ~iii~~pl~~~l~~p-~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~  360 (469)
                      ...++.|+.+++-++ +.|           .+-+.+|.++.+++.+.+++..                    .....+..
T Consensus        62 ~~~~~~~~~G~laDr~~G~-----------r~~~~~g~~~~~~g~~~~~~~~--------------------~~~~ll~~  110 (489)
T PRK10207         62 LVYGLISIGGYVGDHLLGT-----------KRTIVLGAIVLAIGYFMTGMSL--------------------LKPDLIFI  110 (489)
T ss_pred             HHHHHHhhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHHhc--------------------cchhHHHH
Confidence            334445566666554 222           2457789988888888777642                    00111335


Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhccCcc--hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167          361 QYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE  438 (469)
Q Consensus       361 ~~~l~~igE~~i~~~~~~~~~~~aP~~--~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~  438 (469)
                      ..+++++|+.+..|....++.++-|++  .|+...+++++..++|..+++.+++.+.+.-      +|           .
T Consensus       111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~------gw-----------~  173 (489)
T PRK10207        111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF------GY-----------S  173 (489)
T ss_pred             HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh------Ch-----------H
Confidence            678899999999999999999999887  4577899999999999999999999886421      24           3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          439 RFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       439 ~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                      +.|++.++..++..+.++...++++
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~  198 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVK  198 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhc
Confidence            4566555544444555555544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.63  E-value=0.0011  Score=67.66  Aligned_cols=121  Identities=12%  Similarity=0.043  Sum_probs=88.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+...+...++.|+.+++.+++.||           +-+.++.++.+++.+.+++.....           +  ..
T Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~~-----------~--~~  108 (399)
T PRK05122         53 AGLVISLQYLATLLSRPHAGRYADTLGPK-----------KAVVFGLCGCALSGLLYLLAGLLA-----------A--WP  108 (399)
T ss_pred             HHHHHHHHHHHHHHhchhhHhHHhccCCc-----------chHHHHHHHHHHHHHHHHHhhhhh-----------c--cc
Confidence            35666777777788888888887655443           235566666666555444332000           0  01


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ..+.++++...++.|+++....+.....+.+..|++.|+.++|++.....+|..+++.+++.+.+
T Consensus       109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122        109 VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            13566788889999999999999999999999999999999999988888898888888877643

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.61  E-value=0.0027  Score=66.52  Aligned_cols=122  Identities=11%  Similarity=0.007  Sum_probs=85.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      +..+...+..++..++.+++.+++.||           +-+.++.++.+++.+.+++.+.......       .  ....
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~~-------~--~~~~  118 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSIG-------P--DNTG  118 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhcccccccc-------c--cchh
Confidence            344555556667777777776655444           2356677777777666655321100000       0  0112


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      .+++++...++.|++.....|....++.+..|++.||.++|++.....+|..+++.+.....
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  180 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA  180 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35567788899999999999999999999999999999999999999999998877665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.60  E-value=0.00067  Score=74.16  Aligned_cols=134  Identities=15%  Similarity=0.045  Sum_probs=92.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--HHhhhh----h-c--
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIK--RKRVAV----N-S--  342 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~--~~~~~~----~-~--  342 (469)
                      .+++.+.+-+...+..++..++-    .|       ....+-+++|+++.+++.++.++.+..  +++...    . +  
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~----~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFG----TK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhh----cc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            35667777777777777776653    33       122344788999999999888876421  110000    0 0  


Q ss_pred             ----CCC--C--C----------CC-Cc--chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHH
Q 012167          343 ----GLV--N--S----------SE-PL--PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA  401 (469)
Q Consensus       343 ----g~~--~--~----------~~-~~--~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~  401 (469)
                          .+-  +  +          .. ..  ...+..++...+++|+|+....+.+..++.+..|++.|+.++|++.....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence                000  0  0          00 00  11344566789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhhhcc
Q 012167          402 MGYYFSTVLVSIVNN  416 (469)
Q Consensus       402 iG~~l~~~l~~~~~~  416 (469)
                      +|..+|+++++.+.+
T Consensus       219 iG~~lG~llgg~l~~  233 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQ  233 (633)
T ss_pred             hhhHHHHHHHHHHHh
Confidence            999999999887664

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.59  E-value=0.0066  Score=63.26  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhh
Q 012167          311 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS  390 (469)
Q Consensus       311 ~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g  390 (469)
                      .+-+.++++..++..+..++.                     .|++.+....++.|++|.... ....++++..|++.|+
T Consensus        92 K~vL~l~~l~Wsl~t~L~~fa---------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~  149 (511)
T TIGR00806        92 KPVLVLQALSFVCVWLLLLLG---------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ  149 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH
Confidence            345677777777777776665                     257788999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          391 LATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       391 ~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      +++|++.....+|..+++.+++.+.
T Consensus       150 ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       150 RAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999843

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00898 2A0119 cation transport protein

Probab=97.59  E-value=0.00076  Score=71.40  Aligned_cols=132  Identities=13%  Similarity=0.103  Sum_probs=97.7

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++.+++..+..++..++.+++.+++.||           +-+.++.++.+++.+..++.                     
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~---------------------  177 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS---------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            4566777777777888888776654433           22556666666666555543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.|++.....+....++.+..|++.|+.+++++....++|..+++.++..+.         +|      
T Consensus       178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w------  242 (505)
T TIGR00898       178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW------  242 (505)
T ss_pred             ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH------
Confidence            256778888999999999999999999999999999999999999999999999888876653         24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFL  456 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~  456 (469)
                           ...|++.++.+++..+.++
T Consensus       243 -----r~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       243 -----RWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             -----HHHHHHHHHHHHHHHHHHH
Confidence                 3456666666666555443

>PRK11043 putative transporter; Provisional

Probab=97.58  E-value=0.0031  Score=64.51  Aligned_cols=136  Identities=10%  Similarity=0.004  Sum_probs=92.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+...+..++.+++.+++.||           +-+..+.++.+++.+..++.                     
T Consensus        44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   91 (401)
T PRK11043         44 SASLSLFLAGFALGQLLWGPLSDRYGRK-----------PVLLAGLSLFALGSLGMLWV---------------------   91 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhhcCCc-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3445555556666777777665543322           34566776776666655543                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.+++.....+...+.+.+..|++.++...+......++|..+++.+++.+.+..      +|      
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------g~------  159 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF------GW------  159 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------Ch------
Confidence            245667777889999888888888899999999999999999888888888888888887765321      24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLF  457 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~  457 (469)
                           ...|++.+++.++..+..+.
T Consensus       160 -----~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        160 -----QAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHH
Confidence                 34566666666655544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.56  E-value=0.0031  Score=65.99  Aligned_cols=142  Identities=11%  Similarity=-0.053  Sum_probs=90.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      ...+...+...+..|+.+++.+++.+|           +-+.+|.++.+++.+..++...                 ...
T Consensus        67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----------~~l~~~~~~~~i~~~~~~~~~~-----------------~~~  118 (452)
T PRK11273         67 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPW-----------------ATS  118 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCc-----------hhHHHHHHHHHHHHHHHHhhhc-----------------ccc
Confidence            344455555666677777775544322           2366777777777776665420                 012


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHH-HHHhHhhhccccccCCCCCCCcCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYF-STVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l-~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      +.++++...++.++++....|.....+.+..|++.|+..+|+++....+|..+ ++++...... .     .+|      
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~-----~gw------  186 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-F-----NDW------  186 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h-----ccH------
Confidence            45566777889999999888887888889999999999999999988888754 4443222211 0     134      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                           ...|++.++++++..++.+++.+
T Consensus       187 -----~~~f~i~~~~~~~~~~l~~~~~~  209 (452)
T PRK11273        187 -----HAALYMPAFAAILVALFAFAMMR  209 (452)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHcc
Confidence                 34566666666665544444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.56  E-value=0.0038  Score=65.84  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=85.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+..++..++.+++.+++.||           +-+.++.++.+++.+.+++.                     
T Consensus        58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  105 (496)
T PRK03893         58 ASLISAAFISRWFGGLLLGAMGDRYGRR-----------LAMVISIVLFSVGTLACGFA---------------------  105 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            3444555555566667777765544332           23556777777777666653                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.+++....++.+++.....+....++.+..|++.|+..+|++....++|..+++.+.+.+.+
T Consensus       106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  169 (496)
T PRK03893        106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP  169 (496)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2466778889999999999999999999999999999999999999999999999998887653

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.51  E-value=0.0018  Score=66.70  Aligned_cols=118  Identities=13%  Similarity=-0.035  Sum_probs=85.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+++.+...+..++..|+.+++.+++.||           +-+.++.++.++++...++...   .             .
T Consensus        54 ~g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~~---~-------------~  106 (417)
T PRK10489         54 VGLSVTLTGGAMFIGLMVGGVLADRYDRK-----------KLILLARGTCGLGFIGLALNAF---L-------------P  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhcCCc-----------eEEEehHHHHHHHHHHHHHHHH---c-------------C
Confidence            35566677777778888888776655433           1233456666666655443210   0             0


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ..+.+++....++.+++..+..+...+.+.+..|++.++..++++....++|..+|+.+++.+.+
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence            12456677788899999988889999999999999999999999999999999999998887653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.51  E-value=0.0033  Score=60.61  Aligned_cols=88  Identities=11%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHH
Q 012167          361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERF  440 (469)
Q Consensus       361 ~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~  440 (469)
                      ...++|++--++.-..+..+....|++.-|+..|......++|-.+.+.+++++.+..+     ++        ..++.|
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y--------~~le~f  424 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY--------DNLEAF  424 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch--------hhHHHH
Confidence            45677888878878889999999999999999999999999999999999998876321     12        135778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 012167          441 YWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       441 f~~la~l~l~~~l~~~~~~~~  461 (469)
                      |+.++.+++....+.+.+.|+
T Consensus       425 fl~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  425 FLIIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             HHHHHHHHHHHHHHHhheecc
Confidence            888887888777666665554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.49  E-value=0.0027  Score=67.47  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch--h
Q 012167          312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--R  389 (469)
Q Consensus       312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~--~  389 (469)
                      +-+.+|.++.+++...+++..                    .+.+++....+++++|..+..|....++.++.|++.  +
T Consensus        89 ~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~  148 (500)
T PRK09584         89 RVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRL  148 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhh
Confidence            346678888887776665431                    123345567788999999888998999999988643  4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167          390 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  464 (469)
Q Consensus       390 g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~  464 (469)
                      +..+++++...++|..+++.+++.+.+..      +|           .+.|++.++..++..+.+++..+.++.
T Consensus       149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~-----------~~~F~i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        149 DGAFTMYYMSINIGSFFSMLATPWLAAKY------GW-----------SVAFALSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH-----------HHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            45788889999999999999998876411      23           445666666666666666666555544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.46  E-value=0.002  Score=66.19  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=83.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...++.|+.+++.+++.||           +-+.++.++.+++.+.+++..                    
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~--------------------   89 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI--------------------   89 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH--------------------
Confidence            5556667777788889988887655443           235566666655554443321                    


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                       +.   +..++++++++.+..|...+.+.+..|++.|+.++|++.....+|..+|+.+++.+.+
T Consensus        90 -~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         90 -HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             -HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11   3456889999999999999999999999999999999999999999999999988753

>TIGR00901 2A0125 AmpG-related permease

Probab=97.46  E-value=0.0074  Score=60.61  Aligned_cols=85  Identities=6%  Similarity=0.013  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHH
Q 012167          314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT  393 (469)
Q Consensus       314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~  393 (469)
                      +..+.++.++++..+++..                  ...+.+++...+++.++.-.+..+...+++.+.+|++.|+.+.
T Consensus        60 l~~~~~~~~~~~~~l~~~~------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~  121 (356)
T TIGR00901        60 LVLTQVLLLSLLLILSFLV------------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGS  121 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCC------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence            3456666666665555431                  1235666777778888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcc
Q 012167          394 SLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       394 gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      |+.....++|..+++.++..+..
T Consensus       122 ~~~~~~~~~G~~~~~~l~~~l~~  144 (356)
T TIGR00901       122 TIYIVGYRAGMLLSGSLALVLAS  144 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999988876653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.46  E-value=0.003  Score=66.25  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=88.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..|+.+++.+++.+|           +-+..|.++.+++.+.+++..                    
T Consensus        57 ~~~~s~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~--------------------  105 (455)
T TIGR00892        57 AWISSIMLAVLYAGGPISSILVNRFGCR-----------PVVIAGGLLASLGMILASFSS--------------------  105 (455)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHcCch-----------HHHHhhHHHHHHHHHHHHHhh--------------------
Confidence            4444444455566677777665533322           345667777777766665542                    


Q ss_pred             hhHHHHH-HHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          353 ITFLWVA-LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       353 ~s~~wli-~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                       +.+.++ ...++.++++....+.....+.+..| +.|+..+|++.....+|..+++.+.+.+.+..      +|     
T Consensus       106 -~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw-----  172 (455)
T TIGR00892       106 -NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW-----  172 (455)
T ss_pred             -hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch-----
Confidence             233333 23467788888776777777777776 68999999999999999999988887765421      24     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                            ...|++.++++++..+..+++
T Consensus       173 ------r~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       173 ------RGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHh
Confidence                  456777777777665544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.44  E-value=0.0043  Score=64.75  Aligned_cols=148  Identities=11%  Similarity=0.072  Sum_probs=100.7

Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012167          270 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE  349 (469)
Q Consensus       270 ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~  349 (469)
                      +-.+...+++-.-=|++-++..++    .+|.       ...+-|..|+.+.++=++....++                 
T Consensus       406 ~LfGv~~a~~~~gEI~~~ffs~kl----I~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~-----------------  457 (618)
T KOG3762|consen  406 TLFGVVSALCHAGEILFYFFSFKL----IEKI-------GHVNVMYLGLACNVGRFLYYSYLQ-----------------  457 (618)
T ss_pred             eeeeehhhhhccchHHHHHHHHHH----HHHh-------cccceeeehhhHHHHHHHHHHHhc-----------------
Confidence            334444444444444444444444    4442       223445677777766666655543                 


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHH-HHHHHHHHHhHhhhccccccCCCCCCCc
Q 012167          350 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL-AMGYYFSTVLVSIVNNITSTYRHTPWLF  428 (469)
Q Consensus       350 ~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~l~~~l~~~~~~~t~~~~~~~w~~  428 (469)
                          |+|..+|.-+++++--..++.+.-+++...+|++++..++|+..... ++|..+|+++++.+.+.-       |  
T Consensus       458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-------g--  524 (618)
T KOG3762|consen  458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-------G--  524 (618)
T ss_pred             ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-------h--
Confidence                46667789999999999999999999999999999999999987744 777777777777765421       1  


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167          429 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS  466 (469)
Q Consensus       429 ~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~  466 (469)
                              ...+|...++.|++..++++.+.+..+++.
T Consensus       525 --------~~ttf~~~giAcl~~l~~~~~iq~~l~~~~  554 (618)
T KOG3762|consen  525 --------ARTTFRIFGIACLVTLALFISIQLLLKRRG  554 (618)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence                    234677778888877777777766665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.43  E-value=0.00043  Score=58.59  Aligned_cols=87  Identities=14%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++...+.+++.+...|...++..|.++++      +|.+..++.+...++|..+++.+.+++.+..+|+..|.+.
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL  123 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence            3566777788899999999999999999998864      3667889999999999999999999999989999999988


Q ss_pred             HHHHHHHHHHHHh
Q 012167          116 TATILLSIPIFLL  128 (469)
Q Consensus       116 ~v~~~i~~ii~~~  128 (469)
                      ++..+++.+....
T Consensus       124 ~~~~~~~~~~~~~  136 (141)
T TIGR00880       124 AILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777666555443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.0032  Score=66.42  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      |.+-++...+++|+.|....|.........=.++.||..+|+|+...++|+.+|+++...+.++.+..+..+|       
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-------  205 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-------  205 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence            5566778889999999999999999999999999999999999999999999999998876443222223345       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFWA  459 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~~  459 (469)
                          .+.|.+-|+++++.+++.+++.
T Consensus       206 ----~~~FiI~G~i~~~~gi~~f~~l  227 (495)
T KOG2533|consen  206 ----RWLFIIEGVITLVLGIVVFFFL  227 (495)
T ss_pred             ----eeehhHHHHHHHHHHheEEEEe
Confidence                5789999999888876554443

>PTZ00207 hypothetical protein; Provisional

Probab=97.40  E-value=0.0059  Score=65.81  Aligned_cols=118  Identities=6%  Similarity=0.032  Sum_probs=86.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchh
Q 012167          310 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR  389 (469)
Q Consensus       310 ~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~  389 (469)
                      +.+-+.+|.++.+++.++.++...         +      ....+.+.+....++.++|+.+..+.....+.+..| +.|
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~---------~------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~R  153 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQ---------E------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNR  153 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhc---------c------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhh
Confidence            334577899999999988887521         0      012367777888999999999999999999999887 678


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167          390 SLATSLSWASLAMGYYF-STVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY  462 (469)
Q Consensus       390 g~~~gl~~l~~~iG~~l-~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~  462 (469)
                      |.++|++....++|+.+ +++...++..        +|           ..+|++++++.++..++.+.+.|..
T Consensus       154 G~a~Gi~~~~~gLGsaI~~~l~~~l~~~--------~~-----------~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        154 GAVVAIMKTFTGLGSAILGSIQLAFFSD--------NT-----------SAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hH-----------HHHHHHHHHHHHHHHHHHHhheeCC
Confidence            99999999999999976 4444444321        12           3467777888887777666665544

>PRK10133 L-fucose transporter; Provisional

Probab=97.40  E-value=0.0071  Score=63.11  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=84.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.....+...+..|+.+.+.+++.+|           +-+.+|+++.+++.+......                  ..
T Consensus        64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r-----------~~l~~g~~~~~~~~~l~~~~~------------------~a  114 (438)
T PRK10133         64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAA------------------EI  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence            4455566666777777777775544333           346778888888776643211                  01


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  414 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  414 (469)
                      .++++++...+++|+|.....+....++.+..|++.+...++++....++|..+++.++..+
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999999988888887789999999999999999887654

>TIGR00897 2A0118 polyol permease family

Probab=97.39  E-value=0.0073  Score=62.05  Aligned_cols=115  Identities=18%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++..+...+...++.|+.+++.+++.+|           +-+..|.++.+++.+...+..                 ...
T Consensus        51 g~~~~~~~~~~~i~~~~~g~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~~-----------------~~~  102 (402)
T TIGR00897        51 ASAFTLYGIAAAISAWISGVVAEIIGPL-----------KTMMIGLLLWCVGHAAFIVFG-----------------LGH  102 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHh-----------------ccC
Confidence            4455666667777778877776544332           345677777777655433221                 001


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHH-HHHHHhHhhhc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGY-YFSTVLVSIVN  415 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~-~l~~~l~~~~~  415 (469)
                      .+++.++..+++.+++.....+.....+.+..|++.|+.++|++....++|. .+++.+.+...
T Consensus       103 ~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897       103 ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2455566778889999888888888888899999999999999999999986 57777766544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.37  E-value=0.021  Score=60.60  Aligned_cols=132  Identities=17%  Similarity=0.210  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhhhcccCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 012167          289 VYNHVIIPFARKVTKTEMGITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGS  367 (469)
Q Consensus       289 l~~~l~~p~~~r~~~~~~~~s~~~r-i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~i  367 (469)
                      +...+|-|+.+|.+...  ....++ +.++.++.+++...+++..                  ...+.+|+....++.++
T Consensus        60 ~~~~l~gpl~Dr~~~~~--~Grrr~~ll~~~i~~~~~~~~~a~~~------------------~~~~l~~l~~~~~l~~~  119 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPF--LGRRRGWLLATQLLLLVAIAAMGFLE------------------PGTQLRWLAALAVVIAF  119 (491)
T ss_pred             HHHHHHHHHHHcccccC--CCCchHHHHHHHHHHHHHHHHHHHcC------------------CcchHHHHHHHHHHHHH
Confidence            34455666666632110  111122 5567777777776666542                  12457788888889999


Q ss_pred             HHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHH
Q 012167          368 ADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCIL  447 (469)
Q Consensus       368 gE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l  447 (469)
                      +-....+...+++.+..|++.|+.++|+......+|..+++.+...+.+..     .+|           ...|++.+++
T Consensus       120 ~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~-----~GW-----------r~~f~i~a~l  183 (491)
T PRK11010        120 CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY-----LGW-----------QGMYWLMAAL  183 (491)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCH-----------HHHHHHHHHH
Confidence            888899999999999999999999999999999999999988877765310     135           3466777777


Q ss_pred             HHHHHHHHH
Q 012167          448 GGLNFLHFL  456 (469)
Q Consensus       448 ~l~~~l~~~  456 (469)
                      +++..+..+
T Consensus       184 ~ll~~l~~~  192 (491)
T PRK11010        184 LIPCIIATL  192 (491)
T ss_pred             HHHHHHHHH
Confidence            666654433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.33  E-value=0.0037  Score=66.36  Aligned_cols=115  Identities=16%  Similarity=0.068  Sum_probs=83.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167          275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  354 (469)
Q Consensus       275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s  354 (469)
                      +++...+..++..++..++.+++.||           +-+.+++++.+++.+++++..               +.....+
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~---------------~~~~~~~  114 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSP---------------GSSPKSV  114 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHcc---------------CcccchH
Confidence            45555555556666666665544443           224566666666666555431               0001134


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      .++++...++.|+++....+....++.+.+|++.||.+++++.....+|..+++.+...+.
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999999999999999999999999999999888876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.32  E-value=0.004  Score=62.68  Aligned_cols=140  Identities=9%  Similarity=-0.003  Sum_probs=87.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG-TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~-~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      +++.+...+..++..|+.+++.+++.+|           +++. .+.++.+++.+..++.                    
T Consensus        36 g~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~--------------------   84 (375)
T TIGR00899        36 GLFYTGSAIVGIAVSQLLATRSDYQGDR-----------KGLILFCCLLAALACLLFAWN--------------------   84 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCc-----------hHHHHHHHHHHHHHHHHHHhc--------------------
Confidence            3445556666677788877775543222           2333 3445444444444332                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH--HHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA--TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG  429 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~--~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~  429 (469)
                       .+.++++...++++.++....|...+...+..|++.|+..  .+......++|..+++.+++.+.+.      -+|   
T Consensus        85 -~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------~~~---  154 (375)
T TIGR00899        85 -RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------FGF---  154 (375)
T ss_pred             -chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------ccc---
Confidence             2455555566777777777788888998888888777643  5777777888999998888776531      124   


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                              ...|++.+.++++..++.++..++
T Consensus       155 --------~~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       155 --------TVMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence                    345666677666666555554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.32  E-value=0.0033  Score=73.62  Aligned_cols=63  Identities=8%  Similarity=-0.026  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      |+++++...+++++++.+..|...+++.+..|++.++.++|+.....++|..+|+.+++++..
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678889999999999999999999999999999999999999999999999999999998764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.30  E-value=0.013  Score=61.92  Aligned_cols=136  Identities=13%  Similarity=0.048  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 012167          279 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  358 (469)
Q Consensus       279 n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  358 (469)
                      ..+..++..++.+++.+++.+|           +-+.++.++.+++.+..++..                     +.+.+
T Consensus        80 ~~~~~~~~~~~~G~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~~---------------------s~~~l  127 (476)
T PLN00028         80 SVSGSIFSRLAMGPVCDLYGPR-----------YGSAFLLMLTAPAVFCMSLVS---------------------SATGF  127 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHhc---------------------CHHHH
Confidence            3334444455666655433322           345667777777766655541                     34455


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccC---CCCCCCcCCCCCch
Q 012167          359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY---RHTPWLFGSNLNHY  435 (469)
Q Consensus       359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~---~~~~w~~~~~~n~~  435 (469)
                      +...++.|+++.... .....+.+..|++.||..+|++.....+|..+++.+.+.+...-...   +..+|         
T Consensus       128 ~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW---------  197 (476)
T PLN00028        128 IAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW---------  197 (476)
T ss_pred             HHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh---------
Confidence            567788999987654 34567889999999999999998777777777766655443210000   00124         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 012167          436 HLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       436 ~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                        ...|++.++++++..++.+++
T Consensus       198 --r~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        198 --RIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHH
Confidence              456777777777665554444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.27  E-value=0.23  Score=52.94  Aligned_cols=83  Identities=17%  Similarity=0.107  Sum_probs=69.6

Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHH
Q 012167           34 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG  113 (469)
Q Consensus        34 ~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~  113 (469)
                      ..+.+.+.+.+.+.|++.++...+...+++|.++++      +|..+-++ +.....|+.+++..++++..  +|++.+.
T Consensus       168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence            356888999999999999999999999999999976      36667677 77888889999999998887  8999999


Q ss_pred             HHHHHHHHHHHH
Q 012167          114 ISTATILLSIPI  125 (469)
Q Consensus       114 i~~v~~~i~~ii  125 (469)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            877777666555

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.24  E-value=0.006  Score=71.31  Aligned_cols=115  Identities=14%  Similarity=0.034  Sum_probs=83.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+..+++.|+.+++.+++.||           +-+.++.++.+++.+...+...                  .
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----------~~l~~~~~~~~~~~~~~~~~~~------------------~  100 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSKN-----------RVIRIVKLFEVGLTLLIVLAYY------------------L  100 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence            3444455555667777777776544433           2244455544444443332210                  1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .++++++...++.|++..+..|...+++.+..|++.|+.++|+.....++|..+|+.+++++..
T Consensus       101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2467788899999999999999999999999999999999999999999999999999888754

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.22  E-value=0.0084  Score=63.11  Aligned_cols=177  Identities=12%  Similarity=0.066  Sum_probs=103.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+..+.++..++..|+.+++.++...|. ||   .++.  +..|.+..++++..+++..........+  .  +.....
T Consensus        42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GR---Rrp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~--~--~~~~~~  111 (477)
T TIGR01301        42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GR---RRPF--IAAGAALVAFAVILIGFAADIGHLFGDN--L--DKKTKP  111 (477)
T ss_pred             HHHHHHHHHHHHHHHhHeeehhcCCCCCC-CC---hHHH--HHHHHHHHHHHHHHHHhCchhhhhcccc--c--cccchh
Confidence            45667788888899999999888654443 22   1111  3446677777777766543110000000  0  000112


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchh--hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCc--
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR--SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF--  428 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~--  428 (469)
                      ..+++.+..+.+..++--...+..-+++.|++|++.|  +.+.+......++|+.++..++++.....-.    ++..  
T Consensus       112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~----~~~~~~  187 (477)
T TIGR01301       112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF----PFTKTE  187 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----cccccc
Confidence            2234445555555566666667778999999999876  5788888899999999999888764211000    0000  


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          429 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       429 ~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                      +...-..++...|.+-+++.++..++-++..|.+.
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            00111124455677767777777776666666654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.20  E-value=0.014  Score=59.79  Aligned_cols=108  Identities=11%  Similarity=-0.031  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHH
Q 012167          314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT  393 (469)
Q Consensus       314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~  393 (469)
                      +.++.++.++++..+++.+                  ...+++++...+++.++......|...+++.+..|++.|+.+.
T Consensus        71 l~~~~~~~~l~~~~l~~~~------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~  132 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCP------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGA  132 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcC------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence            6666777777777665542                  1135666777778888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012167          394 SLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHF  455 (469)
Q Consensus       394 gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~  455 (469)
                      ++.....++|..+++.+...+.+..     -+|           ...|++.+++.++..+..
T Consensus       133 ~~~~~g~~~g~i~g~~l~~~l~~~~-----~gw-----------~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        133 AVKVLGYRLAMLVSGGLALWLADRV-----LGW-----------GNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcc-----cCH-----------HHHHHHHHHHHHHHHHHH
Confidence            9999999999999888776664310     134           345666677666555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.19  E-value=0.0064  Score=64.36  Aligned_cols=90  Identities=11%  Similarity=0.039  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167          312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  391 (469)
Q Consensus       312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~  391 (469)
                      +-+.+++++.+++.+.+++....-.             .....+.+++...+++|+|+....+....++.+..|++.||.
T Consensus        88 ~~l~~~~~l~~i~~~~~a~~~~~~~-------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~  154 (490)
T PRK10642         88 KILAITIVIMSISTFCIGLIPSYAT-------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF  154 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHH-------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence            4577888888888888777631000             001122357889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhh
Q 012167          392 ATSLSWASLAMGYYFSTVLVSIV  414 (469)
Q Consensus       392 ~~gl~~l~~~iG~~l~~~l~~~~  414 (469)
                      +++++.....+|..+++.+...+
T Consensus       155 ~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        155 MGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888887666544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.19  E-value=0.02  Score=60.05  Aligned_cols=85  Identities=12%  Similarity=-0.026  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhh
Q 012167          311 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS  390 (469)
Q Consensus       311 ~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g  390 (469)
                      .+-+.+++++.++..+..++...                ....|.+.++...++.|++ ....+.....+.+..|++.||
T Consensus       100 R~v~~~~~ll~~i~~~~~~~a~~----------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG  162 (462)
T PRK15034        100 RRWTVFSTAILIIPCVWLGIAVQ----------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG  162 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc----------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH
Confidence            34566777777777766665410                0113677788899999998 557788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHh
Q 012167          391 LATSLSWASLAMGYYFSTVLVS  412 (469)
Q Consensus       391 ~~~gl~~l~~~iG~~l~~~l~~  412 (469)
                      +++|++.....+|..++..+..
T Consensus       163 ~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        163 SALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHH
Confidence            9999996545555555444443

>TIGR00896 CynX cyanate transporter

Probab=97.18  E-value=0.0084  Score=60.25  Aligned_cols=110  Identities=16%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .++..+++.+...+..|+.+++.+++.+|           +.+.+|.++.+++.+.. ..                    
T Consensus        37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~--------------------   84 (355)
T TIGR00896        37 AGLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA--------------------   84 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh--------------------
Confidence            35667777788888888888876644433           33556666666555443 11                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                       .+.++++...++.+++..+..+.....+.+..| +.|+.++|++.....+|..+++.+...+.
T Consensus        85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             134566677889999998888777788888777 57999999999999999999988877664

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.02  E-value=0.076  Score=54.19  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167          312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  391 (469)
Q Consensus       312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~  391 (469)
                      +-+.+|+++..+..+...+.+                  .+... |...  ++.++..-=+...+=++..+.+|++..+.
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~------------------~~~~f-~i~g--ll~g~s~G~~qA~SRSy~~~lvp~~k~~~  377 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLE------------------GELDF-WILG--LLVGTSLGGAQASSRSYLARLVPKGKEGR  377 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHcc------------------ccHHH-HHHH--HHHHHhcchHHHHHHHHHHHhCCCccccc
Confidence            456677777666665555443                  12222 3332  34444444456777799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhccccc
Q 012167          392 ATSLSWASLAMGYYFSTVLVSIVNNITS  419 (469)
Q Consensus       392 ~~gl~~l~~~iG~~l~~~l~~~~~~~t~  419 (469)
                      ..|++.++.-.++.+||.+.+++.++|+
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988875

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.01  E-value=0.015  Score=61.48  Aligned_cols=136  Identities=11%  Similarity=0.051  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHH
Q 012167          281 IFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL  360 (469)
Q Consensus       281 l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~  360 (469)
                      ....+..++.+++.+++.          ...+-+.+|.++.+++.++++..+                    .+..++..
T Consensus        56 ~~~~l~~ligG~LaDRil----------Grrr~iliG~il~~lg~lll~~~~--------------------~~~~~~~l  105 (493)
T PRK15462         56 SLVYVTPILGGFLADKVL----------GNRMAVMLGALLMAIGHVVLGASE--------------------IHPSFLYL  105 (493)
T ss_pred             HHHHHHHHHHHHHHHHcc----------CcHHHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHH
Confidence            343445556666665542          112336788888887776554321                    01112223


Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhccCcc--hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167          361 QYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE  438 (469)
Q Consensus       361 ~~~l~~igE~~i~~~~~~~~~~~aP~~--~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~  438 (469)
                      ...+..+|--+..+...+++.++-|++  .|....++.+....+|+.+++.+.+.+.+..      +|           .
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw-----------~  168 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW-----------A  168 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch-----------H
Confidence            334455565566677778899998875  7899999999999999999999998875411      24           3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          439 RFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       439 ~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                      +.|.+.++.++++.+.++...|++.
T Consensus       169 ~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            4566666666666666655555543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.0059  Score=62.06  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=91.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167          308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  387 (469)
Q Consensus       308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~  387 (469)
                      .+|.+=+.+|++++++..+.+++.                     .|++.+...+++.+.-+-.-.|.....+++.-|++
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs---------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~  149 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS---------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK  149 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh---------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence            456666899999999999998875                     26667777888888888888899999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhH--hhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          388 MRSLATSLSWASLAMGYYFSTVLV--SIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       388 ~~g~~~gl~~l~~~iG~~l~~~l~--~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                      .||+..++|+.+.++|+.+.+.+.  ..+...      .+|           ...|++-++++++.+++.+...|
T Consensus       150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~------~~w-----------~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFH------GGW-----------RAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             ccCceEEEehhhhhcccchHHHHHHHHHHHhc------cch-----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999888  444421      134           34567778887777776655543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.99  E-value=0.16  Score=54.06  Aligned_cols=84  Identities=18%  Similarity=0.246  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i  114 (469)
                      +...+++|+++.++|.|+..-.+.-++++.-+++      .|...-+.+.+++++|.+++..+.....+. ++|+..+.+
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            5788999999999999999988888777776543      466777889999999999996555555443 589988877


Q ss_pred             HHHHHHHHHHH
Q 012167          115 STATILLSIPI  125 (469)
Q Consensus       115 ~~v~~~i~~ii  125 (469)
                      ..+..++-.+.
T Consensus       215 ~~i~~~~~~~~  225 (513)
T KOG0254|consen  215 ALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHH
Confidence            66655444443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.94  E-value=0.031  Score=59.74  Aligned_cols=118  Identities=14%  Similarity=0.112  Sum_probs=88.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+.++....+-.+++.|+.+.+.+++-||           +-+...-++.++..+..++...        .        .
T Consensus        47 valv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~--------~--------~   99 (524)
T PF05977_consen   47 VALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAF--------F--------G   99 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHH--------h--------C
Confidence            45667888888889999988887655433           2234444444444333333321        0        1


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ..++|.++..-++.+++..+..|.-.+.+-++.|++.-..+.++.....+++..+||.+++++..
T Consensus       100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva  164 (524)
T PF05977_consen  100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA  164 (524)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            36777788888999999999999999999999999999999999999999999999988887653

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.81  E-value=0.021  Score=59.84  Aligned_cols=84  Identities=11%  Similarity=0.071  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167          313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  392 (469)
Q Consensus       313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~  392 (469)
                      -+.+|++.-.+++.+.++.+.                      -|+.-........-.+..|...+++.+++.++-+|.+
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~----------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v  367 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE----------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKV  367 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc----------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccch
Confidence            467899888888888888741                      1444444555555567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167          393 TSLSWASLAMGYYFSTVLVSIVNNIT  418 (469)
Q Consensus       393 ~gl~~l~~~iG~~l~~~l~~~~~~~t  418 (469)
                      +++.....++.+.+++.+-+.+...|
T Consensus       368 ~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  368 FGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999999888876655

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.02  Score=60.18  Aligned_cols=118  Identities=13%  Similarity=0.217  Sum_probs=91.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167          308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  387 (469)
Q Consensus       308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~  387 (469)
                      ....+-+.++.++.+++-+..-++.                   ..+.+.++...+++|++|....|....+..+-+|++
T Consensus       100 ~G~r~v~~~~~~~sa~~t~l~P~aa-------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~  160 (466)
T KOG2532|consen  100 FGARRVFFISGLISALLTLLTPLAA-------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN  160 (466)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHH-------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence            3445668888888887776665543                   244556789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          388 MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       388 ~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                      .|++..++......+|..++-.+++.+-+..     -+|           ...|.+.|+++++-.++++.+.+
T Consensus       161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW-----------~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  161 ERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW-----------PSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC-----------chHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999887887766421     257           34566677777777766665544

>TIGR00889 2A0110 nucleoside transporter

Probab=96.79  E-value=0.003  Score=65.51  Aligned_cols=86  Identities=13%  Similarity=0.183  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHH-HHHHHHHHHHHHHHHhhccc------CCcc
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDN------KGWQ  109 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y-~~iNiGa~i~~~~~~~l~~~------~g~~  109 (469)
                      .+.+++...+.+++.+...|+...++.|+++++      +|.+++++++ ...++|..+||+++|++.++      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            456677788889999999999999999998854      4678899997 56789999999999999887      4699


Q ss_pred             hhHHHHHHHHHHHHHHHHh
Q 012167          110 WGFGISTATILLSIPIFLL  128 (469)
Q Consensus       110 ~~F~i~~v~~~i~~ii~~~  128 (469)
                      .+|.+.++..++..+++.+
T Consensus       382 ~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999888777666655443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.79  E-value=0.014  Score=58.79  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167          313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  392 (469)
Q Consensus       313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~  392 (469)
                      -+.+|.++.+++.+..++....    .       .  ......++++...+++|++.....+....++.+..|++.|+.+
T Consensus        67 ~l~~~~~~~~~~~~~~~~~~~~----~-------~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  133 (394)
T TIGR00883        67 TLVITLLMMGIGTLLIGLLPSY----A-------T--IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFY  133 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCh----h-------h--hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHH
Confidence            3667778777777766654200    0       0  0012234567788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhc
Q 012167          393 TSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       393 ~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      ++++.....+|..+++.+...+.
T Consensus       134 ~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       134 GSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988876654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.054  Score=59.20  Aligned_cols=90  Identities=14%  Similarity=0.173  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc----------
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN----------  105 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~----------  105 (469)
                      -..+|++|.++.|+|...+.|--.+.+=|-..++      +....++++|..--+|.++|.+++++.-+-          
T Consensus       236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~  309 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG  309 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence            3558899999999999888888777777766554      245688999999999999999999986331          


Q ss_pred             --------C-CcchhHHHHHHHHHHHHHHHHhcCC
Q 012167          106 --------K-GWQWGFGISTATILLSIPIFLLGSP  131 (469)
Q Consensus       106 --------~-g~~~~F~i~~v~~~i~~ii~~~~~~  131 (469)
                              + -|+++|++++..++++.+.+++.-|
T Consensus       310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence                    1 3999999999999888877766433

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.71  E-value=0.065  Score=54.80  Aligned_cols=91  Identities=11%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchh--hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR--SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                      +.+++.....+.+..+....|...+.+.+..|++-|  +.+.++.....++|..+++.+++.+.+..      +|     
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw-----  172 (393)
T PRK15011        104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF-----  172 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch-----
Confidence            344444444445555556778888888887776544  45668888889999999999998875421      34     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                            ...|++.++++++.++..+...+.
T Consensus       173 ------~~~f~~~~~~~~~~~~~~~~~~~~  196 (393)
T PRK15011        173 ------TVMYLSAAVAFIVCGVMVWLFLPS  196 (393)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHhhcCc
Confidence                  446777777777766655554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.70  E-value=0.045  Score=56.82  Aligned_cols=91  Identities=12%  Similarity=0.054  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167          312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  391 (469)
Q Consensus       312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~  391 (469)
                      +-+.+++++.+++.+..++.....  .           ....++.+++...+++|+|+-...|....++.+..|++.||.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~  160 (432)
T PRK10406         94 KSMLISVCMMCFGSLVIACLPGYE--T-----------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF  160 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCch--h-----------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence            346778888887777766642000  0           001345678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          392 ATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       392 ~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      +++++......|..+++.+...+.
T Consensus       161 ~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        161 YASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888888776655543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.57  E-value=0.014  Score=60.38  Aligned_cols=121  Identities=12%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+.++..+.-.+..|+.+.+.++..+|+ ||   .+  .-+.+|.++.+++++.+....               +....
T Consensus        38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~-Gr---rr--~~i~~~~~~~~i~~~~~~~~~---------------~~~~~   96 (437)
T TIGR00792        38 GTLFLVARILDAITDPIMGNIVDRTRTRW-GK---FR--PWLLIGAIPFSIVLVLLFTTP---------------DFSAT   96 (437)
T ss_pred             HHHHHHHHHHHHhccchheEeeecCCCCC-CC---cc--hhHHHhHHHHHHHHHHHHhCC---------------CCCcc
Confidence            34445555666666777777666544332 11   01  125667777777766655431               00112


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc-CcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLVSIV  414 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  414 (469)
                      ...+|.+..+++.+++..+..+...++..+.+ |++.|+...++......+|..+++.+...+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l  159 (437)
T TIGR00792        97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL  159 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888899999999888888888888887 468899999998888888888877665443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=96.57  E-value=0.091  Score=54.53  Aligned_cols=91  Identities=20%  Similarity=0.115  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167          312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  391 (469)
Q Consensus       312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~  391 (469)
                      +-+..+.++.+++.+.+++......             .......+++...++.++++....+....++.+..|++.|+.
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  153 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYAT-------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGF  153 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHH-------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchH
Confidence            3467788877777777666420000             000011245677899999999888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          392 ATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       392 ~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      +++++.....+|..+++.++..+.
T Consensus       154 ~~~~~~~~~~~g~~~g~~~g~~l~  177 (434)
T PRK15075        154 YTSWQSASQQVAVVFAALLGYLLN  177 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988887777777776666543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.54  E-value=0.033  Score=59.39  Aligned_cols=107  Identities=13%  Similarity=0.084  Sum_probs=88.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..++.+++.+.+.||           +-+.++.++..++.++.++.                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            5667777777777888888877766665           24667788888888777765                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV  411 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~  411 (469)
                      .++++++...++.|+|--+.+....-++.+.+|++.||.+.++..+...+|-.++-.++
T Consensus       140 ~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~  198 (513)
T KOG0254|consen  140 PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN  198 (513)
T ss_pred             hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            26889999999999999999999999999999999999999999999998888883333

>PTZ00207 hypothetical protein; Provisional

Probab=96.49  E-value=1.4  Score=47.73  Aligned_cols=79  Identities=15%  Similarity=0.046  Sum_probs=61.1

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHH-HHHHHHhhcccCCcchhHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALI-AVTFVVWIEDNKGWQWGFG  113 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i-~~~~~~~l~~~~g~~~~F~  113 (469)
                      .+.+.+++.+.+.++|.+.+.+.....+.++|++       +|..+.++...+.++|+.+ +++..+++.+  +|+..|.
T Consensus       118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            4588889999999999999999888999999973       3567899999999999975 6666666654  5666776


Q ss_pred             HHHHHHHHH
Q 012167          114 ISTATILLS  122 (469)
Q Consensus       114 i~~v~~~i~  122 (469)
                      +.++..++.
T Consensus       189 ~l~vl~~vv  197 (591)
T PTZ00207        189 FLMSFALVV  197 (591)
T ss_pred             HHHHHHHHH
Confidence            665555443

>PRK09952 shikimate transporter; Provisional

Probab=96.47  E-value=0.051  Score=56.62  Aligned_cols=110  Identities=16%  Similarity=0.083  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHH
Q 012167          286 LAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFL  365 (469)
Q Consensus       286 ~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~  365 (469)
                      ..|+-+.+.-++.+|.       ...+-+.+++++.+++.+..++....-.             ....+++.++...+++
T Consensus        76 ~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~R~l~  135 (438)
T PRK09952         76 FRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFST-------------IGWWAPVLLVTLRAIQ  135 (438)
T ss_pred             HHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHHH-------------HHHHHHHHHHHHHHHH
Confidence            3455444444555553       2224466788888887777766521000             0001233477788999


Q ss_pred             HHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          366 GSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       366 ~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      |+++....|....++.+..|++.||.+++.......+|..++..+...+.
T Consensus       136 G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~  185 (438)
T PRK09952        136 GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS  185 (438)
T ss_pred             HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877666543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=1.3  Score=46.25  Aligned_cols=159  Identities=13%  Similarity=0.042  Sum_probs=93.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC--CCC-C
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV--NSS-E  349 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~--~~~-~  349 (469)
                      -.+.+++.+.+-+...+.+..+.++.||.+ +   +.-..-+.+|.++..++++..-+-      ...+..+.  +++ .
T Consensus       278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir-~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~  347 (461)
T KOG3098|consen  278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIR-G---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPL  347 (461)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhhhhh-h---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCccccc
Confidence            344566666666666665555555555532 1   333334566666665555443221      11111110  110 0


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167          350 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG  429 (469)
Q Consensus       350 ~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~  429 (469)
                      .-+-+...-...++++|+++.+.....+..+.... ++-|..+-++.-+..++++-++.+..+..               
T Consensus       348 ~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~---------------  411 (461)
T KOG3098|consen  348 LFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL---------------  411 (461)
T ss_pred             ccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Confidence            11123434456679999999999999999999999 55566777788887888877654443322               


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                            .+..+.+...+++.+..+++..+.++.+
T Consensus       412 ------~l~~~~l~~~i~~~i~~~~~~~~~~~~~  439 (461)
T KOG3098|consen  412 ------LLYIYTLGLPIFCVIATTIFFIVAERTQ  439 (461)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1233456677788888888887777764

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.25  E-value=0.082  Score=54.00  Aligned_cols=139  Identities=11%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+.++..+...+..|+.+++.+++.||           +.+..+++..+++...........              ...
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~   95 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLISDKLGLK-----------KHLLWIISGLLVLFAPFFIYVFGP--------------LLQ   95 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHHhhh--------------HHH
Confidence            5567777888888999999988766554           122233333333222211110000              000


Q ss_pred             hh-HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          353 IT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       353 ~s-~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                      .+ .+..+...++.+++.....|...+++.+..++  ++...|......++|..+++.+++.+...       +|     
T Consensus        96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-------~~-----  161 (396)
T TIGR00882        96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSI-------DP-----  161 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhcc-------Cc-----
Confidence            11 22345567788888888888888887776554  34455666666778888888887776431       23     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHH
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFL  456 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~  456 (469)
                            ...|++.++++++..++.+
T Consensus       162 ------~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       162 ------QIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             ------hHHHHHHHHHHHHHHHHHH
Confidence                  3356666666666554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.15  E-value=0.22  Score=53.69  Aligned_cols=121  Identities=12%  Similarity=0.117  Sum_probs=82.5

Q ss_pred             cccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012167          261 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV  340 (469)
Q Consensus       261 ~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~  340 (469)
                      +..++|+-+ ...|+...+.+..-+..|+.+++.+-+.||+           -+..|.++..+|.++++-.+        
T Consensus        70 I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~--------  129 (599)
T PF06609_consen   70 INADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ--------  129 (599)
T ss_pred             HHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC--------
Confidence            444555321 2357777788888888899999988776652           35678888888888876442        


Q ss_pred             hcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          341 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       341 ~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                                   |+.-++...++.++|--..... ...+.+..|.+.|....++.....-+....++.+...+.
T Consensus       130 -------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  130 -------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             -------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence                         3334667778888876555443 455889999999988777666655555556666666554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.98  E-value=0.092  Score=54.01  Aligned_cols=45  Identities=16%  Similarity=-0.121  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHH
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL  400 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~  400 (469)
                      +++..--.+++..+.-..|++.|+..+..=+...+...|+..+..
T Consensus       360 viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~g  404 (480)
T KOG2563|consen  360 VIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSG  404 (480)
T ss_pred             EehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeeh
Confidence            344445567777888888999999999999999999999877743

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.90  E-value=0.026  Score=60.79  Aligned_cols=215  Identities=17%  Similarity=0.161  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHH
Q 012167           38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA  117 (469)
Q Consensus        38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v  117 (469)
                      ...|....+...+ +..++|++++.|+++....  .-+.+..+|..+|+.+|+++++..+.            .|+++..
T Consensus        60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~  124 (571)
T KOG1237|consen   60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLS  124 (571)
T ss_pred             HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHH
Confidence            3444444444455 8889999999999998632  23467788999999999999987543            5666666


Q ss_pred             HHHHHHHHHHhcCCcccccC-CCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCCC
Q 012167          118 TILLSIPIFLLGSPFYRNKI-PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK  196 (469)
Q Consensus       118 ~~~i~~ii~~~~~~~~~~~~-p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~  196 (469)
                      .++.++..+-.   .+.... ..++|-.....++..++.....-...         ..++  ...+  .+          
T Consensus       125 a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg---------~r~~--~~~f--Ga----------  178 (571)
T KOG1237|consen  125 AMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGG---------IRPC--LLAF--GA----------  178 (571)
T ss_pred             HHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCC---------CCCc--chhh--cc----------
Confidence            66444433222   111110 11222222233333333332211000         0000  0011  00          


Q ss_pred             CchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHccc-CCCCcccCCCCC
Q 012167          197 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNT-KLGSLKVPPASL  275 (469)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~-~~~g~~ip~~~l  275 (469)
                                   |+       +++...++++        .....+.|..++|..+.+..|+..++. +..|+.+-++..
T Consensus       179 -------------dQ-------fd~~~~~~~~--------~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~  230 (571)
T KOG1237|consen  179 -------------DQ-------FDELDPVEVK--------GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIP  230 (571)
T ss_pred             -------------cc-------cCccCcchhh--------CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHH
Confidence                         00       0000001111        134567788888888888888765554 446788888888


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALV  331 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~  331 (469)
                      +..|.+.+++|.+....+.+|.          +.-..+..+|.++.+.+.-..+.+
T Consensus       231 ~~~~~lai~iF~~g~~~y~~~~----------p~gsp~t~i~~Vlvaa~~k~~~~~  276 (571)
T KOG1237|consen  231 TVLNALAILIFLPGFPFYRYKK----------PRGSPKTRIGQVLVAAAFKRKAVV  276 (571)
T ss_pred             HHHHHHHHHHHHcCceeEEeeC----------CCCCchhHHHHHHHHHHHHHhccC
Confidence            9999999999988776553322          222256778888888877765433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.82  E-value=0.073  Score=54.15  Aligned_cols=124  Identities=17%  Similarity=0.133  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc---hh
Q 012167          313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS---MR  389 (469)
Q Consensus       313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~---~~  389 (469)
                      -+.+|.++..+|.+++.+....     .  . .    ....+...+.....+.++|.-++-|....+..+|-+++   .|
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~-----~--~-~----~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~   70 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP-----P--S-L----PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR   70 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS-----S--S-C----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc-----c--h-h----hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence            3678889999999886655310     0  0 0    11244556777888999999999999999999999987   35


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012167          390 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS  465 (469)
Q Consensus       390 g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~  465 (469)
                      ......++...++|..++..+.+.+.+.      .+|           ...|++.++.++++.+.|+.-.++|+.+
T Consensus        71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~------~~~-----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   71 DSFFNWFYWGINIGSLFSPTLVPYIQQN------YGW-----------FLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHC------S-H-----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhHHHHHHHHhhhhHhhcccchhhccc------cch-----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            5566777888899999998888877641      233           5678888888888888888888888776

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.82  E-value=0.057  Score=54.36  Aligned_cols=112  Identities=16%  Similarity=0.119  Sum_probs=85.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      .+.+.+.-.+.=.+..|+++.+.+.+.||       +.    +.+|.+..++++...+..                    
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRk-------pv----ll~c~~~va~s~ll~~~S--------------------  118 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRK-------PV----LLACLIGVALSYLLWALS--------------------  118 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCch-------HH----HHHHHHHHHHHHHHHHHH--------------------
Confidence            34455555566667888888888777665       33    456777677766665543                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                       .+...++...++.|+.--.+++. -+.+.+.++++.|+..|+....+.++|-.+||++++....
T Consensus       119 -~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 -RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence             23445677788889888777654 7899999999999999999999999999999999998875

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.76  E-value=0.097  Score=57.25  Aligned_cols=152  Identities=13%  Similarity=0.059  Sum_probs=99.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH----HHhhhh----hcCC--------------CCC---CCC----cchh-HH-HH
Q 012167          310 HLQRIGTGLILSIVAMAVAALVEIK----RKRVAV----NSGL--------------VNS---SEP----LPIT-FL-WV  358 (469)
Q Consensus       310 ~~~ri~~G~~l~~i~~~~~a~~~~~----~~~~~~----~~g~--------------~~~---~~~----~~~s-~~-wl  358 (469)
                      -.+-|++|.++++++.++.++.+..    +++...    .++-              ...   ++.    ...+ +| .+
T Consensus       161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf  240 (735)
T KOG3626|consen  161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF  240 (735)
T ss_pred             ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence            3456899999999999999887532    111111    0000              000   001    1122 33 45


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCC--CCCchh
Q 012167          359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS--NLNHYH  436 (469)
Q Consensus       359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~--~~n~~~  436 (469)
                      +..-++.|+|+--+.+.+.+++.+.+-++...++.|+.+....+|-.+|-+++++..+.=..    -+..+.  +.+|.+
T Consensus       241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD----~~~~~~~it~~DPr  316 (735)
T KOG3626|consen  241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD----FGLSPIGITPTDPR  316 (735)
T ss_pred             HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec----cccCCCCCCCCCcc
Confidence            67889999999999999999999999999999999999999988888877777776552100    000011  222332


Q ss_pred             HHH----HHHHHHHHHHHHHHHHHHHhhccccc
Q 012167          437 LER----FYWLMCILGGLNFLHFLFWAARYKYS  465 (469)
Q Consensus       437 l~~----~f~~la~l~l~~~l~~~~~~~~~~~~  465 (469)
                      -.-    -|++.+++.++.++-++++-|.+.+.
T Consensus       317 WIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626|consen  317 WIGAWWLGFLICGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence            221    25678888888888888887777654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.74  E-value=0.87  Score=46.52  Aligned_cols=97  Identities=23%  Similarity=0.323  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHH
Q 012167          314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT  393 (469)
Q Consensus       314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~  393 (469)
                      |-.|.++.+.+...+...-..   .+. .+ .+.+.....-.......|.+.|+|--......++++.|.+|++.|+.+.
T Consensus        53 I~~G~~~~~~g~~~ap~a~~~---l~~-~~-~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v  127 (403)
T PF03209_consen   53 IWGGTLLQAGGLAIAPFALLL---LAE-SG-QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVV  127 (403)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH---Hcc-cc-cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhH
Confidence            667888777777666554321   111 00 0000011112223457899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhc
Q 012167          394 SLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       394 gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      ++.+.+.-+|-.+++.+.+..-
T Consensus       128 ~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen  128 AIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999888877653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.66  E-value=0.17  Score=51.47  Aligned_cols=61  Identities=5%  Similarity=-0.201  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      +.++++..+++++.+.....|...+++.+  +++.|+...|......++|..+++.+++.+.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~  153 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG  153 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777888888887777887777654  35678889999999999999999998887764

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=95.52  E-value=0.2  Score=50.99  Aligned_cols=87  Identities=7%  Similarity=-0.029  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167          355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH  434 (469)
Q Consensus       355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~  434 (469)
                      ..|++...++.++......+....+..+..+++.++.+.+.......+|..+++.+...+.+..      +|        
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw--------  162 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ--------  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence            3455555566666666677777778888888888888888888888889999887666554311      34        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Q 012167          435 YHLERFYWLMCILGGLNFLHFLFW  458 (469)
Q Consensus       435 ~~l~~~f~~la~l~l~~~l~~~~~  458 (469)
                         ...|++.+++.++..+..+..
T Consensus       163 ---~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       163 ---RPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHc
Confidence               346777777777666655444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=95.48  E-value=2.9  Score=42.39  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      .+...+.+-..++++|.|+ .|-..+.-++..+....   ....-.+  +.  .-+|..+...+.=.+..++||++-...
T Consensus       164 pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r---~~~~V~~--~~--waig~v~ea~law~vm~~~gwr~~l~~  235 (528)
T KOG0253|consen  164 PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHR---WLLTVMS--FF--WAIGQVFEALLAWGVMSNFGWRYLLFT  235 (528)
T ss_pred             CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCC---CcchhHH--HH--HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4456667777889999999 88888877777665421   1111222  33  345777776666556677899876655


Q ss_pred             HHHHH
Q 012167          115 STATI  119 (469)
Q Consensus       115 ~~v~~  119 (469)
                      ..+-.
T Consensus       236 ~~~pl  240 (528)
T KOG0253|consen  236 SSTPL  240 (528)
T ss_pred             HHhHH
Confidence            55433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.45  E-value=0.17  Score=51.46  Aligned_cols=112  Identities=8%  Similarity=-0.118  Sum_probs=67.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 012167          272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP  350 (469)
Q Consensus       272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~r-i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~  350 (469)
                      .+++.++..+..++..|+.+.+.++..|+        ...+| +.++..+.  +.   .+..                  
T Consensus        41 iG~~~~~~~l~~~l~~~~~g~l~dr~g~~--------~~~~~~~~~~~~~~--~~---~~~~------------------   89 (382)
T PRK11128         41 IGLLLGAGLVARFLGSLLIAPRVKDPSQL--------IPALRLLALLTLLF--AV---AFWF------------------   89 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcch--------HHHHHHHHHHHHHH--HH---HHHH------------------
Confidence            35566777778888888888876654432        11122 22121111  11   1110                  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       351 ~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ...+.|.+....++.+++.....|...+.+.+..  +.|+..+|......++|..+++.+++.+.+
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~~  153 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLVS  153 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            0134566666778888888878887777766653  345666666777778888888888887754

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.26  E-value=0.0038  Score=66.84  Aligned_cols=174  Identities=17%  Similarity=0.119  Sum_probs=3.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhh-----h--
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKR----KRVAV-----N--  341 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~----~~~~~-----~--  341 (469)
                      +++.+.+-+.-+++..++.++    ..|       -+-+|-+++|.++++++.++.++.+..-    +....     .  
T Consensus        41 G~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~  109 (539)
T PF03137_consen   41 GLISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI  109 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence            445555555555555555443    333       2335679999999999999987765321    11100     0  


Q ss_pred             -cCCC----------------CCCC-CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHH
Q 012167          342 -SGLV----------------NSSE-PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMG  403 (469)
Q Consensus       342 -~g~~----------------~~~~-~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG  403 (469)
                       ..+-                +.++ ....-+++++...+++|+|..-+.+.+.+++.|.++++..+.+.|+++....+|
T Consensus       110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG  189 (539)
T PF03137_consen  110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG  189 (539)
T ss_dssp             ------------------------------------------SSS-----------------------------------
T ss_pred             ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence             0000                0000 111234667888999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhHhhhccc----ccc--------CCCCCCCcCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHhhccccc
Q 012167          404 YYFSTVLVSIVNNI----TST--------YRHTPWLFGSNLNHYHLER-FYWLMCILGGLNFLHFLFWAARYKYS  465 (469)
Q Consensus       404 ~~l~~~l~~~~~~~----t~~--------~~~~~w~~~~~~n~~~l~~-~f~~la~l~l~~~l~~~~~~~~~~~~  465 (469)
                      -.+|-++++.+.++    ...        .+|+.|+        ..=| -|++.+++.++.++-+..+=|++...
T Consensus       190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv--------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV--------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH--------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            88777666655432    110        1122222        0000 24456667777777777666665444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01272 gluP glucose/galactose transporter

Probab=95.20  E-value=0.22  Score=49.45  Aligned_cols=63  Identities=10%  Similarity=0.031  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      -|..+.+..+++.+.|-.+..++.+.++.+..|++.++..+++.....++|..++|++++.+.
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999998765

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.20  E-value=0.0045  Score=66.28  Aligned_cols=92  Identities=11%  Similarity=0.113  Sum_probs=2.9

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc-----------
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-----------  104 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~-----------  104 (469)
                      ....|++|-++.++|...+.+--.+++-|-.++++      -.-+++++|....+|..+|.++++..-.           
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            46888899999999999988888887777666542      3467888999999999999988886532           


Q ss_pred             ----------cCC-cchhHHHHHHHHHHHHHHHHhcCCcc
Q 012167          105 ----------NKG-WQWGFGISTATILLSIPIFLLGSPFY  133 (469)
Q Consensus       105 ----------~~g-~~~~F~i~~v~~~i~~ii~~~~~~~~  133 (469)
                                .+| |+++|.+.++..++..+-++..-|++
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             ----------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence                      123 99999999998887776665544433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=94.97  E-value=0.068  Score=56.44  Aligned_cols=88  Identities=15%  Similarity=0.267  Sum_probs=76.3

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHH
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFG  113 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~  113 (469)
                      .+.+.+|+.-+++++..|+..+..-++.++..|++      +...+|++|.......+.+||++.+.+.+..| .+.+|.
T Consensus       378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~  451 (477)
T PF11700_consen  378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL  451 (477)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            45677888888999999999999999999999986      34679999999999999999999999988765 889999


Q ss_pred             HHHHHHHHHHHHHHh
Q 012167          114 ISTATILLSIPIFLL  128 (469)
Q Consensus       114 i~~v~~~i~~ii~~~  128 (469)
                      ...+.++++++++..
T Consensus       452 ~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  452 FLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888877644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.94  E-value=0.29  Score=51.37  Aligned_cols=92  Identities=7%  Similarity=0.013  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhH
Q 012167          358 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL  437 (469)
Q Consensus       358 li~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l  437 (469)
                      ++-.-++.|++--+++....+..+++.-+..+|+++|++....+++..+++++........+    .             
T Consensus       391 l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g----~-------------  453 (488)
T KOG2325|consen  391 LISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG----P-------------  453 (488)
T ss_pred             eeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC----c-------------
Confidence            34445677778778888999999999999999999999999999999999988877665332    1             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167          438 ERFYWLMCILGGLNFLHFLFWAARYKYSS  466 (469)
Q Consensus       438 ~~~f~~la~l~l~~~l~~~~~~~~~~~~~  466 (469)
                      .+.+...+.+.++...+..+..+|....+
T Consensus       454 ~~v~~~~~~~~l~~~~l~~~~~~r~~~~~  482 (488)
T KOG2325|consen  454 RPVWIILLCLLLVVAALWIVFLKRLVPLK  482 (488)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcccce
Confidence            22344444444444445555555554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=94.93  E-value=0.029  Score=57.92  Aligned_cols=85  Identities=16%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      .+.+++...+.+++.+...+.....+.+.++++      .+...+.. +.++.++|..+++.++|++.+.+||+..|.+.
T Consensus       315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~  388 (420)
T PRK09528        315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL  388 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence            455666667777777777777777778877653      23334433 45678899999999999999999999999987


Q ss_pred             HHHHHHHHHHHH
Q 012167          116 TATILLSIPIFL  127 (469)
Q Consensus       116 ~v~~~i~~ii~~  127 (469)
                      ++..++..++.+
T Consensus       389 ~~~~~i~~~~~~  400 (420)
T PRK09528        389 GGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHH
Confidence            777766554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=94.78  E-value=3e-05  Score=80.72  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc---cCCcchhH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---NKGWQWGF  112 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~---~~g~~~~F  112 (469)
                      +.+.+.+++.+.|+|.|+.-+....++.+..+++      .|.....+...+.++|.+++..++-.+.+   +.+|+..+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence            5788899999999999999999999999887764      35566777888888998888776654433   34599999


Q ss_pred             HHHHHHHHHHH
Q 012167          113 GISTATILLSI  123 (469)
Q Consensus       113 ~i~~v~~~i~~  123 (469)
                      .++++..++.+
T Consensus       175 ~~~~~~~l~~~  185 (451)
T PF00083_consen  175 IFGAIPSLLVL  185 (451)
T ss_pred             ccccccccccc
Confidence            88776664433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=94.64  E-value=1.5  Score=46.02  Aligned_cols=84  Identities=14%  Similarity=0.042  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-cchhhHH
Q 012167          314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-LSMRSLA  392 (469)
Q Consensus       314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-~~~~g~~  392 (469)
                      +.+|.+..++++..+..+.        +.       .......|....|++..++--+....-.++..++++ ++.|+..
T Consensus        83 il~g~i~~~i~~~llf~~p--------~~-------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l  147 (460)
T PRK11462         83 VLFGALPFGIVCVLAYSTP--------DL-------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISL  147 (460)
T ss_pred             HhHHHHHHHHHHHHHHhCC--------CC-------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHH
Confidence            5567777777766554331        00       011236788899999999999999999999999999 6999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHh
Q 012167          393 TSLSWASLAMGYYFSTVLVS  412 (469)
Q Consensus       393 ~gl~~l~~~iG~~l~~~l~~  412 (469)
                      ++.-.....+|..+++.+..
T Consensus       148 ~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462        148 QSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999888888887776653

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.55  E-value=1.3  Score=46.64  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV  411 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~  411 (469)
                      +...++...++.|+..-+......=++.+.||++.||.+..+..+...+|.+++..++
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            5667889999999999999999999999999999999999999999999999986665

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=94.51  E-value=0.63  Score=47.54  Aligned_cols=120  Identities=14%  Similarity=0.035  Sum_probs=77.8

Q ss_pred             ccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012167          269 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSS  348 (469)
Q Consensus       269 ~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~  348 (469)
                      .+.+++...+..+-++....+ -...-++..|       ..+.+-..+++++..+-.+..++...               
T Consensus        45 ~LS~~q~~ll~aiPil~Gall-Rl~~g~l~dr-------fGgR~~~~~s~~l~~IP~~~~~~a~~---------------  101 (417)
T COG2223          45 GLSEGQKGLLVAIPILVGALL-RLPYGFLTDR-------FGGRKWTILSMLLLLIPCLGLAFAVT---------------  101 (417)
T ss_pred             CCCHHHHHHHHHHHHHHhHHH-HHHHHhhhcc-------cCchHHHHHHHHHHHHHHHHHHHHcc---------------
Confidence            356676655555554444322 2222333444       34444566777777887777777641               


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          349 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       349 ~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                         ..|.|+++..-++.|++-. ....++..+.+.-|++.+|.++|++. ..++|..+..++.+.+..
T Consensus       102 ---~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~  164 (417)
T COG2223         102 ---YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV  164 (417)
T ss_pred             ---CCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence               1233556666677777653 33667889999999999999999999 778888877777776654

>PRK09669 putative symporter YagG; Provisional

Probab=94.46  E-value=0.24  Score=51.60  Aligned_cols=60  Identities=12%  Similarity=0.035  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc-CcchhhHHHHHHHHHHHHHHHHHHHhHh
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLVS  412 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~~  412 (469)
                      ...+|....|++.+++--+..+.-.++..+.+ +++.|+...+.-.....+|+.+++.+..
T Consensus       107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~  167 (444)
T PRK09669        107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL  167 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888888888777777777888888888 4577888888888888888887766543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.25  E-value=1.4  Score=39.09  Aligned_cols=62  Identities=10%  Similarity=0.110  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      +.+.+++.-++.|+|+.+.+...-.++.+.+.++.+++..|+++.....+..+|+++.-++.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999988888888877665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=94.08  E-value=0.27  Score=50.92  Aligned_cols=157  Identities=15%  Similarity=0.253  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhcccCCCC-CCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHH
Q 012167          282 FILILAPVYNHVIIPFARKVTKTEMG-ITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA  359 (469)
Q Consensus       282 ~iii~~pl~~~l~~p~~~r~~~~~~~-~s~~~r-i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli  359 (469)
                      .+++..+++|.+.+|+.-...-|.|. ..-.|. +.+|.++.++++..+....-        .     +........|+.
T Consensus        41 ~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p--------~-----~~~~~~~~~~~~  107 (428)
T PF13347_consen   41 LILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPP--------A-----GLSFTAKLVWLF  107 (428)
T ss_pred             HHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcccc--------c-----hhhhhhHHHHHH
Confidence            34455567777777755432111000 111111 66788888888887764410        0     001124567888


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167          360 LQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE  438 (469)
Q Consensus       360 ~~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~  438 (469)
                      ..|++..++--+....-.++..+.++. +.|....+.-.....+|+.+.+.+...+.+         |+ .++-+..++.
T Consensus       108 ~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~---------~~-g~~~~~~~~~  177 (428)
T PF13347_consen  108 VFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVS---------WF-GGGDTSNGYR  177 (428)
T ss_pred             HHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh---------hh-ccCccchHHH
Confidence            999999999999999999999999995 789999999888888888766666555442         21 1111111234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 012167          439 RFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       439 ~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                      ...++.+++.++..++..+..|.
T Consensus       178 ~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  178 WMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhheeee
Confidence            45556666666666655555555

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=93.89  E-value=0.81  Score=48.67  Aligned_cols=83  Identities=16%  Similarity=0.245  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      |+++++...++.|++..-....+...+.+..+++.|+.++.+ ......++.+++.++..+..        +|       
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W-------  233 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW-------  233 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH-------
Confidence            678899999999999999999999999999999999999999 55555666666656555542        46       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Q 012167          434 HYHLERFYWLMCILGGLNFLHFL  456 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~  456 (469)
                          .+.++..++.+++.+++++
T Consensus       234 ----r~~~~~~~~~~~~~~~~~~  252 (521)
T KOG0255|consen  234 ----RWLFWIISIPSGLFLLLWF  252 (521)
T ss_pred             ----HHHHHHHHHHHHHHHHHHH
Confidence                4567777777776665533

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.75  E-value=0.77  Score=48.23  Aligned_cols=157  Identities=11%  Similarity=0.084  Sum_probs=89.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      ++..+...+.-.+..|+++++-.    |   +   .+..+=+.+|.+++++|-++...++..                ..
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~----k---~---~~~k~Pli~s~ii~~~g~llY~~l~~~----------------~~  127 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSN----K---T---GSVKKPLIVSFLIAIIGNLLYLALAYV----------------PN  127 (488)
T ss_pred             hHHHHHHHHHHHhcchhhccccc----c---c---CCcccCHHHHHHHHHHHHHHHHHHHhc----------------cc
Confidence            45555567777777777776521    1   1   222333789999999999888666521                01


Q ss_pred             hhHHHHHHHHHHHHHH-HHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC-C
Q 012167          353 ITFLWVALQYLFLGSA-DLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG-S  430 (469)
Q Consensus       353 ~s~~wli~~~~l~~ig-E~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~-~  430 (469)
                      -+.+++...+++.|+| -.+..--.+.-..+..++++|++  +.......+|..+||.+..++..+-+.  +-.|+ + .
T Consensus       128 ~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~--a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~-~~~  202 (488)
T KOG2325|consen  128 GVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAF--AATSGGFVLGIILGPTIQLAFTPLGEK--GFMIL-PGL  202 (488)
T ss_pred             chHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHH--HHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEc-Ccc
Confidence            2678899999999999 44444444444444555555554  444444455555555555444433221  12344 3 3


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167          431 NLNHYHLERFYWLMCILGGLNFLHFLFWAARY  462 (469)
Q Consensus       431 ~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~  462 (469)
                      .+|.....  =|+.+++.++..+...++.|..
T Consensus       203 ~~n~YTap--~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  203 IFNMYTAP--AWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             eEEecchH--HHHHHHHHHHHHHHHHhheeec
Confidence            44433322  2456667777776666665544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.45  E-value=4.2  Score=41.56  Aligned_cols=91  Identities=14%  Similarity=0.049  Sum_probs=71.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167          308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  387 (469)
Q Consensus       308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~  387 (469)
                      .+..+-+.+|+.+++++..+..=+.                  ..-++...+...++++.|--+.-.++..++..+.|++
T Consensus        75 ~gyk~gi~lgL~l~avg~~lF~pAa------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~  136 (422)
T COG0738          75 LGYKAGIVLGLLLYAVGAALFWPAA------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE  136 (422)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhh------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence            4445568899999988877654221                  1124445667788999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          388 MRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       388 ~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ..+.=+.+.....++|..++|.+++..-.
T Consensus       137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            88888999999999999999988876543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=93.08  E-value=1.9  Score=43.43  Aligned_cols=140  Identities=20%  Similarity=0.218  Sum_probs=93.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+.+++-+..=++.|+..+    +.||       .++.+-+..++++.+++..+       |-               -
T Consensus        50 GlLTtLPll~fg~~ap~a~~----Lar~-------~g~er~l~~~Llli~~G~~i-------R~---------------~   96 (395)
T COG2807          50 GLLTTLPLLAFGLFAPAAPR----LARR-------FGEERSLFLALLLIAAGILI-------RS---------------L   96 (395)
T ss_pred             HHHHHHHHHHHHHHHhhhHH----HHHH-------HhhHHHHHHHHHHHHHHHHH-------Hh---------------c
Confidence            34444444444444444433    3444       56667777787777665544       21               1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.+.+...-++.+.|-..+++-.-+++-+.-|++. +.+||+|..+..+|..+++.+...+....     .+|      
T Consensus        97 ~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW------  164 (395)
T COG2807          97 GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW------  164 (395)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH------
Confidence            245567788899999999999999999999999876 58999999999999999988877665422     246      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAARY  462 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~~  462 (469)
                           ..-....+.++++++++++-...|+
T Consensus       165 -----~~aL~~WAl~allAl~~WlPq~~r~  189 (395)
T COG2807         165 -----RGALGFWALLALLALLIWLPQALRE  189 (395)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhhhcccc
Confidence                 2223345677777777777664443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.08  E-value=13  Score=39.10  Aligned_cols=54  Identities=9%  Similarity=0.001  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHH-HHHHHHHHhHhh
Q 012167          360 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA-MGYYFSTVLVSI  413 (469)
Q Consensus       360 ~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~-iG~~l~~~l~~~  413 (469)
                      .+.++.-.++--..=..-|+++...+++.|...-+..-...+ +|-.+|+.+.+.
T Consensus       381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~  435 (472)
T TIGR00769       381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQG  435 (472)
T ss_pred             HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHH
Confidence            477777788877787888999999999999988887766543 566655554443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=92.85  E-value=1  Score=47.44  Aligned_cols=115  Identities=10%  Similarity=0.057  Sum_probs=71.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167          276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  355 (469)
Q Consensus       276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~  355 (469)
                      ..+..++-.+.-|+++.+.++.-.|+ ||   .+|.  +.+|.+..++++..+....          +   .  ......
T Consensus        48 ~~i~ri~dai~dp~~G~lsD~t~sr~-Gr---rrp~--il~g~i~~~i~~~llf~~p----------~---~--~~~~~~  106 (473)
T PRK10429         48 FLVARIWDAINDPIMGWIVNNTRSRW-GK---FKPW--ILIGTLANSVVLFLLFSAH----------L---F--EGTAQY  106 (473)
T ss_pred             HHHHHHHHHHhhchheeehhcCCCCC-CC---cchh--HhhhhHHHHHHHHHHHcCC----------C---C--CccHHH
Confidence            33344444455555555555432232 11   1111  5567777777765553221          0   0  012346


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhcc-CcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLV  411 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~  411 (469)
                      +|....|++..++--+..+.-.++..+++ +++.|....+.-.....+|+.+.+.+.
T Consensus       107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~  163 (473)
T PRK10429        107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888999999988888999999999999 588999988876666677766655443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=92.45  E-value=3.3  Score=43.54  Aligned_cols=130  Identities=18%  Similarity=0.196  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 012167          279 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  358 (469)
Q Consensus       279 n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  358 (469)
                      -++..++..|+++.+.+++.||        .++..-.+|.++-.+.+.+.                          .||.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~--------------------------~~~~  116 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQ--------------------------GYWF  116 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHH--------------------------HHHH
Confidence            3667888999999999888776        33444344444444333321                          2455


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167          359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE  438 (469)
Q Consensus       359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~  438 (469)
                      +. ..=..-+-..+...+++++++.+..+.|....|+...+.+.+..+++.+++...+.         .        +..
T Consensus       117 ~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---------~--------~~a  178 (463)
T KOG2816|consen  117 FL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF---------L--------GIA  178 (463)
T ss_pred             hh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---------c--------Cch
Confidence            43 11122234556678889999999999999999999999999999999888876541         1        223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 012167          439 RFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       439 ~~f~~la~l~l~~~l~~~~~~~  460 (469)
                      ..|++.++..+++.+...+..+
T Consensus       179 ~~f~ia~~~~~~~~~y~~~~l~  200 (463)
T KOG2816|consen  179 LVFLIAAASGILSLLYMLLFLP  200 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc
Confidence            4566555555555554444433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=92.11  E-value=1.5  Score=45.64  Aligned_cols=85  Identities=18%  Similarity=0.183  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc---Ccchhh
Q 012167          314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA---PLSMRS  390 (469)
Q Consensus       314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a---P~~~~g  390 (469)
                      |.+|.++.+++.+.+++...                 ...+........++.++|.++.....-+.+.+.+   |++ +|
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~-----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g  123 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPA-----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG  123 (433)
T ss_pred             HHHHHHHHHHHHHHHHhccc-----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence            56777777666666555420                 0122333334445556666666555555544444   555 88


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          391 LATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       391 ~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ..++..+...++|++++..+++...+
T Consensus       124 ~lqS~~~~~~~~G~lv~~~l~G~l~~  149 (433)
T PF03092_consen  124 DLQSFVWGVRSVGSLVGSLLSGPLLD  149 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            89999999999999999888877654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.20  E-value=0.44  Score=46.35  Aligned_cols=77  Identities=17%  Similarity=0.159  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC---cchhHHHHH
Q 012167           40 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGIST  116 (469)
Q Consensus        40 ~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g---~~~~F~i~~  116 (469)
                      =|+++.++++.....--..-++++...+++      |...+|...|...|+|-.+.|++++.+.++-|   |--+|.+..
T Consensus       355 Py~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  355 PYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            366778888887777666778888888765      57889999999999999999999999988644   555666555


Q ss_pred             HHHHHH
Q 012167          117 ATILLS  122 (469)
Q Consensus       117 v~~~i~  122 (469)
                      ..|.+.
T Consensus       429 ~~~aL~  434 (459)
T KOG4686|consen  429 GLMALT  434 (459)
T ss_pred             HHHHHH
Confidence            555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=90.76  E-value=0.15  Score=54.24  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~i~  115 (469)
                      .+.+..--++++++.|.+-......+.|..+.+      +...+|++.....-+++++||.+++++.+..| |...|..+
T Consensus       388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~  461 (509)
T KOG2504|consen  388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC  461 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence            455555556677777777777777777887764      47789999999999999999999999999887 99999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 012167          116 TATILLSIPIFLLGS  130 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~  130 (469)
                      ++.++++.+..+..+
T Consensus       462 g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  462 GLCFLLSAVLLLILR  476 (509)
T ss_pred             ChHHHHHHHHHHHhH
Confidence            999999886655543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=89.36  E-value=6.6  Score=37.70  Aligned_cols=122  Identities=13%  Similarity=0.137  Sum_probs=79.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch
Q 012167          309 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM  388 (469)
Q Consensus       309 s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~  388 (469)
                      .|..-+.+|.++..+|+....+.-.++              ....+.|.+.....+.+.|..+.......-..+.-|+ .
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~  128 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S  128 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence            444557788888889988877664211              1124555566666777788877777766666678885 6


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          389 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       389 ~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                      ||.+.|+--...++++.+=..+...+.             ++     +.+.|+++++.+..+..++...+.|..+
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f-------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFF-------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHc-------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            999999999988888876444433332             22     1234666777776666665555666664

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=88.75  E-value=0.97  Score=46.63  Aligned_cols=81  Identities=16%  Similarity=0.137  Sum_probs=58.1

Q ss_pred             HHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHH-HHHHHHHHHHHHhhcccCCcc------hhHHHH
Q 012167           43 GLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCL-SCGALIAVTFVVWIEDNKGWQ------WGFGIS  115 (469)
Q Consensus        43 ~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~i-NiGa~i~~~~~~~l~~~~g~~------~~F~i~  115 (469)
                      +..+=++..|.+......++.+..|++.      |.++-+++.... -+|..+|.+++|++.|++|-+      ..|.++
T Consensus       307 ~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~  380 (400)
T PF03825_consen  307 GQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVF  380 (400)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            3345688888999999999999998763      344555555443 489999999999999987644      556666


Q ss_pred             HHHHHHHHHHHHhc
Q 012167          116 TATILLSIPIFLLG  129 (469)
Q Consensus       116 ~v~~~i~~ii~~~~  129 (469)
                      ++..++..+++.+.
T Consensus       381 a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  381 AVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHhh
Confidence            66666666666553

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=88.25  E-value=32  Score=35.32  Aligned_cols=60  Identities=10%  Similarity=0.031  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      ..++.+|.+.+.----...++++|.++.||+...|++|.+.+....+|+-.=..++..+.
T Consensus       370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~  429 (510)
T KOG3574|consen  370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLA  429 (510)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhc
Confidence            345567888888888888999999999999999999999999888887665444444433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=87.56  E-value=1.1  Score=46.56  Aligned_cols=151  Identities=17%  Similarity=0.212  Sum_probs=98.4

Q ss_pred             cCCCCCCChhHHHH---HHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167          270 VPPASLPVFPVIFI---LILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN  346 (469)
Q Consensus       270 ip~~~l~~~n~l~i---ii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~  346 (469)
                      .|++..+.+|..+-   ++.+.+++++=+.+.||           +.++.-++++++|-+++++..          +   
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK-----------~vYG~~liImIi~t~~~~~s~----------~---  136 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK-----------KVYGKELIIMIICSALSGLSV----------G---  136 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch-----------hhhhHHHHHHHHHHHHhccCC----------C---
Confidence            78888787777653   34555666666655554           234555666666655444321          0   


Q ss_pred             CCCCcchh-HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCC
Q 012167          347 SSEPLPIT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP  425 (469)
Q Consensus       347 ~~~~~~~s-~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~  425 (469)
                        ...+.+ .+|+....+++|+|---=+|.+-....+.|-++-||..+++.+.+++.|-..|+.+.-++...-+..    
T Consensus       137 --~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~----  210 (538)
T KOG0252|consen  137 --TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI----  210 (538)
T ss_pred             --CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc----
Confidence              012323 4689999999999988889999999999999999999999999999888888777665554332211    


Q ss_pred             CCcCCCCCchhHHHHHHHHHHHHHHHH
Q 012167          426 WLFGSNLNHYHLERFYWLMCILGGLNF  452 (469)
Q Consensus       426 w~~~~~~n~~~l~~~f~~la~l~l~~~  452 (469)
                       + +..-...|++..|=+.-.++++-+
T Consensus       211 -~-~~~~~~~~ld~vWRl~~glg~vpa  235 (538)
T KOG0252|consen  211 -F-NGPSTYPHLDGVWRIIFGLGAVPA  235 (538)
T ss_pred             -C-CCCCCchHHHHHHHHHHHHHHHHH
Confidence             0 111112367877755444444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=87.32  E-value=13  Score=38.92  Aligned_cols=64  Identities=14%  Similarity=0.074  Sum_probs=54.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      ..+..|....|.+++++--++...-.++..++.+. +.|....+..+....+|+.+...+...+.
T Consensus       109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211         109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778888899999999999999999999888876 88999999999999999888777765444

>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=86.59  E-value=11  Score=34.87  Aligned_cols=99  Identities=12%  Similarity=0.085  Sum_probs=60.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 012167          277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL  356 (469)
Q Consensus       277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~  356 (469)
                      -.|.+.+.+..++..++.++..+|+       .+..++..+++-..++....+....-........+    +.+....+.
T Consensus       106 G~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~----~~~~~~~~~  174 (205)
T PF01891_consen  106 GANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG----DYPWMALVQ  174 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cccHHHHHH
Confidence            4677777777777777777766652       22344555555555555554443322222221111    001234455


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHhhccCc
Q 012167          357 WVALQYLFLGSADLFTLAGMMEFFFTDAPL  386 (469)
Q Consensus       357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~  386 (469)
                      ...+.+.++++.|.+++.....+..+.-|+
T Consensus       175 ~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~  204 (205)
T PF01891_consen  175 AYLPSHLLLAFPEGFLTGMVVTFLVVYRPE  204 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            677889999999999999999999888875

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.79  E-value=11  Score=39.41  Aligned_cols=123  Identities=10%  Similarity=0.146  Sum_probs=69.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167          308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  387 (469)
Q Consensus       308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~  387 (469)
                      .+...|+..++++..+.+++...... +          +.  +.....+..+..-++.+++..+...+.+.++...-|+ 
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-~----------~~--~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~-  137 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVK-V----------QT--SETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST-  137 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheee-e----------cC--CcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH-
Confidence            56667888887766555555433210 0          00  1123455556677788999999989999988865543 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          388 MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN--LNHYHLERFYWLMCILGGLNFLHFLFWA  459 (469)
Q Consensus       388 ~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~--~n~~~l~~~f~~la~l~l~~~l~~~~~~  459 (469)
                          +++.++..+++++.++..+--+... ..         +|+  ...+. ..||.+.+++.+++++.|+.+.
T Consensus       138 ----~~~a~~~G~g~aGv~~s~~~ii~~a-~~---------~~~~~~~~~a-~~YF~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       138 ----YSSAVMSGQGLAGVLTSLAMILVKA-SG---------NDSHGLKKSA-LGYFGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             ----HHHHHHhcchhHHHHHHHHHHHHHH-hc---------CCccchhhhh-hhHHHHHHHHHHHHHHHHHHHh
Confidence                4444555566666665544322211 11         221  22222 3356666667777777776553

>PRK09848 glucuronide transporter; Provisional

Probab=85.55  E-value=9.8  Score=39.44  Aligned_cols=110  Identities=8%  Similarity=0.030  Sum_probs=60.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +.+.....++..+..|+.+++.++..+|+ ||   .++.  +.+|.+..+++...+..+.         .+.     ...
T Consensus        47 g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~-Gr---~~~~--~~~~~~~~~~~~~~~~~~~---------~~~-----~~~  106 (448)
T PRK09848         47 GTMLLLVRVFDAFADVFAGRVVDSVNTRW-GK---FRPF--LLFGTAPLMIFSVLVFWVP---------TDW-----SHS  106 (448)
T ss_pred             HHHHHHHHHHHHHhhhhheeeeecCCCCC-cC---chHH--HHHHHHHHHHHHHHHHhCc---------CCC-----Ccc
Confidence            34455556666677777777776554432 22   1111  2344444433333322111         000     012


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHH
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAM  402 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~i  402 (469)
                      ...+|....+++.+++.-+..+...++..+++++ +.|+...+.-....++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            3467778888888988888888777877766655 5577776655544333

>TIGR00788 fbt folate/biopterin transporter

Probab=84.49  E-value=20  Score=37.74  Aligned_cols=80  Identities=15%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH---HHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL---ATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~---~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.+...++.+++.....+..-.+..+..+ +.++.   .++..+...++|..+++.+++.+.+..      +|      
T Consensus       121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~------~~------  187 (468)
T TIGR00788       121 KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT------LT------  187 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc------Cc------
Confidence            334446788889999998999999999887 33333   444444556688888888887765421      24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHH
Q 012167          433 NHYHLERFYWLMCILGGLNFL  453 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l  453 (469)
                           ...|++.+++.++..+
T Consensus       188 -----~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       188 -----RILFLITAALLLLQLF  203 (468)
T ss_pred             -----chHHHHHHHHHHHHHH
Confidence                 2356666666666643

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=83.82  E-value=22  Score=35.94  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=64.5

Q ss_pred             ccCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHH-HHHHHHHHHHHhhcccCC
Q 012167           29 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLS-CGALIAVTFVVWIEDNKG  107 (469)
Q Consensus        29 c~~~~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iN-iGa~i~~~~~~~l~~~~g  107 (469)
                      |-.........+++|+++-++++.....+--+-...+..+++-++ +-...-|+..-+..| +-++++.+++-++.+..+
T Consensus       113 cl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~  191 (354)
T PF05631_consen  113 CLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG  191 (354)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence            333344568899999999999999988877776665555444211 124455555543334 445666666667777665


Q ss_pred             c--chhHHHHHHHHHHHHHHHH
Q 012167          108 W--QWGFGISTATILLSIPIFL  127 (469)
Q Consensus       108 ~--~~~F~i~~v~~~i~~ii~~  127 (469)
                      .  ...|..+.++.+++.++..
T Consensus       192 ~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  192 FGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             CCCcchHHHHHHHHHHHHHHHH
Confidence            5  6889888888877766543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=83.40  E-value=7.8  Score=40.34  Aligned_cols=166  Identities=13%  Similarity=0.041  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 012167          228 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMG  307 (469)
Q Consensus       228 k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~  307 (469)
                      ++++++..+.+..=+.|....+..|-+.++ ..++...      .+..+-.-|+.-++.+|+.+...++.-.|++++   
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR---  101 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR---  101 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCccc------ccccccccccccceecccccccccccccccccc---
Confidence            445555555555666677666655445432 2222221      344567778999999999999988887776322   


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC--CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC
Q 012167          308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE--PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP  385 (469)
Q Consensus       308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~--~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP  385 (469)
                       +|  =|.+|.++.+++++........-....      |++.  .-+-++...+..+.++-++--++.-..=++..+++-
T Consensus       102 -RP--fI~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~  172 (498)
T KOG0637|consen  102 -RP--FILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLAR  172 (498)
T ss_pred             -cc--hHHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence             11  166777777888777665542222211      2211  223566667777777777775555555677777766


Q ss_pred             cchhhH-HHHHHHHHHHHHHHHHHHhHh
Q 012167          386 LSMRSL-ATSLSWASLAMGYYFSTVLVS  412 (469)
Q Consensus       386 ~~~~g~-~~gl~~l~~~iG~~l~~~l~~  412 (469)
                      ...|-. +++.+-++.++||.+|=.+++
T Consensus       173 ~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  173 GDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             ChhhhhccchhHHHHHHhcceeeeeccc
Confidence            555555 999999999999998765554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=82.22  E-value=2.9  Score=43.86  Aligned_cols=118  Identities=12%  Similarity=0.033  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch--
Q 012167          311 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--  388 (469)
Q Consensus       311 ~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~--  388 (469)
                      .+-+..|-++++++.++++..+                   ..+...+....+++++|--++-|...++..++=|++-  
T Consensus        92 ~~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr  152 (498)
T COG3104          92 RRTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR  152 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence            3558899999999999887642                   0123456667778889999999988898888877632  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167          389 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  464 (469)
Q Consensus       389 ~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~  464 (469)
                      |-...++++...++|+++++.+.+.+..         |.        ....-|-+.++-+.+.++.|++..|+++.
T Consensus       153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~---------~~--------g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         153 RDGGFTLFYMGINIGSLIAPIITGLLAI---------NY--------GWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             cCCCccEEEEEeehHHHHHHHHHHHHHH---------hh--------CHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence            4446677777888999999999988764         21        13456777777777778888888777643

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.04  E-value=73  Score=33.67  Aligned_cols=43  Identities=9%  Similarity=-0.047  Sum_probs=38.6

Q ss_pred             hhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          374 AGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       374 ~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      -.-++++.+....+.-.+..++..+..++|..+|+.++..+.+
T Consensus       148 ~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       148 LLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3668999999999999999999999999999999988887664

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	469
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/362 (18%), Positives = 142/362 (39%), Gaps = 46/362 (12%)
Query: 40  LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ-LGRKQRSAFFNYYVFCLSCGALIAVTF 98
            + GL+++ALG GGIK  ++    +Q+D++ + L +K     F+ + F ++ G+  A   
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSFFASLS 167
Query: 99  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 158
           +  +  N G    FGI    + ++   F LG   Y +  P          V+ +A+    
Sbjct: 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227
Query: 159 KSKNSSNAVTEVHSSPTCSNESRD-------EGNSNVKEKVPSQKPTEDIKFLNRALRNN 211
           + K +   V  +    + +    +        G       V           L RA +++
Sbjct: 228 EGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287
Query: 212 PAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP 271
           P   +                     +  ++L   +    +   Q+A+T   +   +  P
Sbjct: 288 PDAAVDGVRSV---------------LRILVLFALVTPFWSLFDQKASTWILQANDMVKP 332
Query: 272 ----PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAV 327
               PA +     + +++L P  N V+ P    + +  + +T L+++G G+ ++ ++  V
Sbjct: 333 QWFEPAMMQALNPLLVMLLIPFNNFVLYP---AIERMGVKLTALRKMGAGIAITGLSWIV 389
Query: 328 AALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 387
              +++          +++    L I   W  L Y  L   ++   A  +EF ++ AP +
Sbjct: 390 VGTIQL----------MMDGGSALSI--FWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437
Query: 388 MR 389
           M+
Sbjct: 438 MK 439

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	469
2xut_A	524	Proton/peptide symporter family protein; transport	5e-87
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  274 bits (704), Expect = 5e-87
 Identities = 72/432 (16%), Positives = 160/432 (37%), Gaps = 28/432 (6%)

Query: 33  EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA 92
                   + GL+++ALG GGIK  ++    +Q+D++    +      F+ + F ++ G+
Sbjct: 105 FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS---NKSLAQKAFDMFYFTINFGS 161

Query: 93  LIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTA 152
             A   +  +  N G    FGI    + ++   F LG   Y +  P          V+ +
Sbjct: 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221

Query: 153 AIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNP 212
           A+    + K +   V  +    + +    +     +   +        + F+        
Sbjct: 222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGL-CCAMVLVMGFVGAGASLQL 280

Query: 213 AYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP 272
                      V+ V+ V++I  +F           Q ++  + QA  M   +      P
Sbjct: 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEP 337

Query: 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVE 332
           A +     + +++L P  N V+ P   ++      +T L+++G G+ ++ ++  V   ++
Sbjct: 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQ 394

Query: 333 IKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 392
           +                   ++  W  L Y  L   ++   A  +EF ++ AP +M+   
Sbjct: 395 LMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 393 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNF 452
            S    S+ +G  +  +    V + T     T  +  + ++    + F++       L  
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMSVTAFQMFFFA--GFAILAA 496

Query: 453 LHFLFWAARYKY 464
           + F  +A  Y+ 
Sbjct: 497 IVFALYARSYQM 508

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 35  GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALI 94
             A  LF  + ++ +G G +K +++      YDE      ++R A F+ +VF ++ GA I
Sbjct: 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE----HDRRRDAGFSIFVFGINLGAFI 161

Query: 95  AVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 137
           A   V   ++  G+   F ++   + + + ++  G     +  
Sbjct: 162 APLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPH 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 69/525 (13%), Positives = 138/525 (26%), Gaps = 182/525 (34%)

Query: 64  EQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV-WIEDNKGWQWGFGISTATILLS 122
           E+ D               ++         +   FV   +  N  +     I T     S
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPS 106

Query: 123 IPIFLLGSPFYRNKIPTGSPLTTIFKV--------LTAAIFN------------------ 156
           +   +      R+++   + +   + V        L  A+                    
Sbjct: 107 MMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 157 -----TCKSK------------------NSSNAVTE----VHSSPTCSNESRDEGNSNVK 189
                 C S                   NS   V E    +      +  SR + +SN+K
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 190 EKVPSQKPTEDIK-FLNRALRNNPAYPI------------------VQCTV------KEV 224
                      I+  L R L++ P Y                    + C +      K+V
Sbjct: 225 L------RIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 225 EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATM-----NTKLGSLKVPPASLPVFP 279
            +         I +             T +  +  ++     + +   L  P   L   P
Sbjct: 278 TDFLSAATTTHISLDHH--------SMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNP 327

Query: 280 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 339
               +I   + + +    A           + + +    + +I+  ++  L   + +++ 
Sbjct: 328 RRLSIIAESIRDGL----AT--------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 340 VNSGLVNSSEPLP---ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 396
               +   S  +P   ++ +W  +                     +D  + +  L     
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIK-------------------SDVMVVVNKLHKY-- 414

Query: 397 WASLA-----------MGYYFSTVLV---------SIVN--NITSTYRH----TPWLFGS 430
             SL               Y    +          SIV+  NI  T+       P+L   
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 431 NLNH--YHL------ERFYWLMCILGGLNFLHFLFWAARYKYSST 467
             +H  +HL      ER      +     FL F F   + ++ ST
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFLEQKIRHDST 512

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	469
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.29
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.12
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.8
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.76
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.43
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.38
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.22
2xut_A	524	Proton/peptide symporter family protein; transport	98.04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.01
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.63

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=6.1e-23  Score=215.71  Aligned_cols=388  Identities=19%  Similarity=0.290  Sum_probs=233.9

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++++.++|.|...|+..++++|++++++   |.++.+.|++++.+.++|.+++|.+++++.+..||++.|.+.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            47788999999999999999999999999998753   234567899999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCC-Cc-cccccc----cCCCCCCCCcc-cccccc
Q 012167          116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNS-SN-AVTEVH----SSPTCSNESRD-EGNSNV  188 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~-~~-~~~~~~----~~~~~~~~~~~-d~a~~~  188 (469)
                      ++..+++.+.++..++.+++++|++++..+..+.+..+++++....+. .. ....+.    ....+...... ..+.. 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  263 (524)
T 2xut_A          185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCC-  263 (524)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH-
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhh-
Confidence            988888777766655544433333332222222221111111000000 00 000000    00000000000 00000 


Q ss_pred             CCCCCCCCCchhHHHHhhhccCCCCCCc-------cccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHc
Q 012167          189 KEKVPSQKPTEDIKFLNRALRNNPAYPI-------VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATM  261 (469)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~  261 (469)
                                  ..+....+  ....+|       +.++..+.+++|+.++.++++.....++..+.|..+.+..+..++
T Consensus       264 ------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (524)
T 2xut_A          264 ------------AMVLVMGF--VGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM  329 (524)
T ss_dssp             ------------HHHHHHHH--HHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHS
T ss_pred             ------------hhhhhhcc--cccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhc
Confidence                        00000000  000111       011122234566677777888888888888998887777776666


Q ss_pred             ccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012167          262 NTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVN  341 (469)
Q Consensus       262 d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~  341 (469)
                      +.+.  + .+.+.+..++++..++..|+.+++..|..+|+..+   +++.+++.+|+++.+++++.+++.+..+     .
T Consensus       330 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~  398 (524)
T 2xut_A          330 VKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----D  398 (524)
T ss_dssp             CCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T
T ss_pred             CCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence            5442  1 35667778888888999999998877776664222   5677888899999988887766543110     0


Q ss_pred             cCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccC
Q 012167          342 SGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY  421 (469)
Q Consensus       342 ~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~  421 (469)
                      +       ....+.+|+++.+++.++++.+..|..++++.+.+|+++||.++|++++..++|+.+++.+.+.+.+.++  
T Consensus       399 ~-------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--  469 (524)
T 2xut_A          399 G-------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--  469 (524)
T ss_dssp             T-------TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH--
T ss_pred             C-------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence            0       1235778899999999999999999999999999999999999999999999999999999988764221  


Q ss_pred             CCCCCCcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167          422 RHTPWLFGS-NLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS  466 (469)
Q Consensus       422 ~~~~w~~~~-~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~  466 (469)
                        .+|. ++ +.+..  .+.|++.++++++++++++++.+++++++
T Consensus       470 --~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          470 --TEQI-VQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             --HHHH-HHHHSCHH--HHHHHHHHHHHHHHHHHHC----------
T ss_pred             --cccc-cccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence              1232 11 11211  22377888888888888888777776544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=1.8e-19  Score=187.40  Aligned_cols=354  Identities=16%  Similarity=0.251  Sum_probs=232.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.+++++++.++|.|...|+..++++|++++++.    +|..++++++.+.++|..++|.+++++.++.||++.|.+.
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~  182 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA  182 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            367788999999999999999999999999997632    4677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccccC--CCCCCch--hHHHHHHH-------------HHHhhccCCCCCccccccccCCCCCC
Q 012167          116 TATILLSIPIFLLGSPFYRNKI--PTGSPLT--TIFKVLTA-------------AIFNTCKSKNSSNAVTEVHSSPTCSN  178 (469)
Q Consensus       116 ~v~~~i~~ii~~~~~~~~~~~~--p~~~~l~--~~~~v~~~-------------a~~~~~~~~~~~~~~~~~~~~~~~~~  178 (469)
                      ++..+++++++++.++++.+++  +..++..  +..+....             .....  .                  
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~--~------------------  242 (491)
T 4aps_A          183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV--G------------------  242 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH--S------------------
T ss_pred             HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc--c------------------
Confidence            8888877776554433322211  1111111  11110000             00000  0                  


Q ss_pred             CCccccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH
Q 012167          179 ESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA  258 (469)
Q Consensus       179 ~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa  258 (469)
                      ..+++..........   ......+...        .++.. .....++++..+.+++++...+++..+.+..+.+..+.
T Consensus       243 ~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4aps_A          243 WNSLPAYINLLTIVA---IAIPVFYFAW--------MISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA  310 (491)
T ss_dssp             SCCTTHHHHHHHHHH---HHHHHHHHHH--------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred             CcccccchhhhhHHH---HHHHHHHHHH--------Hhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            000000000000000   0000000000        00000 00113456666777888888899999988887766654


Q ss_pred             HH-cccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012167          259 AT-MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKR  337 (469)
Q Consensus       259 ~~-~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~  337 (469)
                      .+ .+.+.    .+.+.+..++++..++..++.+++.+++.||.      +...+++.+|+++.+++++.+++.....  
T Consensus       311 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  378 (491)
T 4aps_A          311 AERVDSSW----FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY--  378 (491)
T ss_dssp             HHSCCCSS----SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC--
T ss_pred             HHHhccCc----cCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            43 33321    46788899999999999999999877665542      5667889999999999998877764211  


Q ss_pred             hhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccc
Q 012167          338 VAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNI  417 (469)
Q Consensus       338 ~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~  417 (469)
                           +     .....+.+|+++.+++.++++.+..|..++++.+..|++.||.++|+++....+|+.+++.+.+.+.+.
T Consensus       379 -----~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          379 -----G-----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             -----C-----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             -----C-----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                 0     012357789999999999999999999999999999999999999999999999999999998877541


Q ss_pred             cccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012167          418 TSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS  465 (469)
Q Consensus       418 t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~  465 (469)
                      .                  ....|+.+++++++..++.+++.++.+++
T Consensus       449 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          449 S------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             S------------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             c------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1                  23467778888888888777776666544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.53  E-value=2.5e-13  Score=138.84  Aligned_cols=315  Identities=8%  Similarity=-0.036  Sum_probs=181.3

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~i  114 (469)
                      +.+.+++++++.++|.|...|...+++.|.++++      +|.++++++..+.++|.++++.+++++.+..| |++.|.+
T Consensus       118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~  191 (451)
T 1pw4_A          118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  191 (451)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3567888999999999999999999999999864      47789999999999999999999999888888 9999999


Q ss_pred             HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167          115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS  194 (469)
Q Consensus       115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~  194 (469)
                      .++..++..++.++..+    ++|+.....               ..+..          ..    .. ....  +... 
T Consensus       192 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---------------~~~~~----------~~----~~-~~~~--~~~~-  234 (451)
T 1pw4_A          192 PAFCAILVALFAFAMMR----DTPQSCGLP---------------PIEEY----------KN----DY-PDDY--NEKA-  234 (451)
T ss_dssp             HHHHHHHHHHHHHHHCC----CSSTTTCCC---------------SCTTT----------CC----C-------------
T ss_pred             HHHHHHHHHHHHHhhcc----CCHhhcCCC---------------Chhhh----------cc----cc-cccc--hhhh-
Confidence            88877665554433221    111110000               00000          00    00 0000  0000 


Q ss_pred             CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcc-cCCC
Q 012167          195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK-VPPA  273 (469)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~-ip~~  273 (469)
                                     ++ ...+   ++....+..+-..+..+.+...+.+..+....+.++.   .+....+ .. ...+
T Consensus       235 ---------------~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~~~~~~  291 (451)
T 1pw4_A          235 ---------------EQ-ELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVKH-FALDKSS  291 (451)
T ss_dssp             --------------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBSC-CCHHHHH
T ss_pred             ---------------hc-cccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC-CCHHHHH
Confidence                           00 0000   0000000000011222222223333332222222222   2222212 10 0123


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~-i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      .+.+...+..++..++..++.+++.+         ...+.+.++.++.+ ++++...+.                   ..
T Consensus       292 ~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~  343 (451)
T 1pw4_A          292 WAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMN-------------------PA  343 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSC-------------------CT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHh-------------------cc
Confidence            34455555555666666665443210         11223444444433 444332221                   01


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHH-HHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWLFGSN  431 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~i-G~~l~~~l~~~~~~~t~~~~~~~w~~~~~  431 (469)
                      .+.++.+...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+.+.+.+..      +      
T Consensus       344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g------  411 (451)
T 1pw4_A          344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G------  411 (451)
T ss_dssp             TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C------
T ss_pred             cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C------
Confidence            24566777778888888888888899999999999999999999999999 9999999988876522      1      


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          432 LNHYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                           +...|++.++++++..++++...++
T Consensus       412 -----~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          412 -----WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                 2456777777777777766665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.29  E-value=1.9e-10  Score=116.95  Aligned_cols=262  Identities=14%  Similarity=0.117  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCC-------
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG-------  107 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~-~~~g-------  107 (469)
                      +.+.+++++++.++|.|...|...++++|.++++      +|..+++++..+.++|.++++.+++++. +..+       
T Consensus       116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  189 (438)
T 3o7q_A          116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL  189 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred             cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            4788999999999999999999999999999875      3667899999999999999999999988 6555       


Q ss_pred             ------------------cchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccc
Q 012167          108 ------------------WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTE  169 (469)
Q Consensus       108 ------------------~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~  169 (469)
                                        |++.|.+.++..++..++++..+      .|+..+             +.  .  .      
T Consensus       190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~------~p~~~~-------------~~--~--~------  240 (438)
T 3o7q_A          190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK------FPALQS-------------DN--H--S------  240 (438)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCTT-------------TC--C--C------
T ss_pred             ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc------CCcccc-------------cc--c--c------
Confidence                              89999877766655554443321      121100             00  0  0      


Q ss_pred             cccCCCCCCCCccccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHH---HHHHHHHhhHHHHHh
Q 012167          170 VHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCC  246 (469)
Q Consensus       170 ~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~i~f~~~  246 (469)
                                   +       .++                   .        +..++.++++   ++....+...++...
T Consensus       241 -------------~-------~~~-------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (438)
T 3o7q_A          241 -------------D-------AKQ-------------------G--------SFSASLSRLARIRHWRWAVLAQFCYVGA  273 (438)
T ss_dssp             -------------C-------SST-------------------T--------SHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred             -------------c-------ccc-------------------c--------chhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence                         0       000                   0        0001111111   111122222222222


Q ss_pred             hhcchhHHHHHHHHcccCCCCcc-cCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHH
Q 012167          247 LAQLSTFSVQQAATMNTKLGSLK-VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAM  325 (469)
Q Consensus       247 ~~Q~~s~~~~qa~~~d~~~~g~~-ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~  325 (469)
                      +....+..+...  ++...+ .. ...+.+..+..+..++..++..++.+++           ...+-+.++.++.++++
T Consensus       274 ~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~~~~~~~~~~  339 (438)
T 3o7q_A          274 QTACWSYLIRYA--VEEIPG-MTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----------APHKVLAAYALIAMALC  339 (438)
T ss_dssp             HHHHHHHHHHHH--HHHSTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--hhccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHH
Confidence            222212222220  111111 10 1123344444555555555555554332           22234556666666665


Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHH
Q 012167          326 AVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYY  405 (469)
Q Consensus       326 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~  405 (469)
                      +...+.                    + +. |.+...++.+++.....|..+++..+..|++ ++..+++.. ...+|..
T Consensus       340 ~~~~~~--------------------~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~  395 (438)
T 3o7q_A          340 LISAFA--------------------G-GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG  395 (438)
T ss_dssp             HHHHHC--------------------C-HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH
T ss_pred             HHHHHc--------------------C-Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH
Confidence            554432                    1 12 3344557888888888999999999999988 888888777 5669999


Q ss_pred             HHHHhHhhhccc
Q 012167          406 FSTVLVSIVNNI  417 (469)
Q Consensus       406 l~~~l~~~~~~~  417 (469)
                      +++.+.+.+.+.
T Consensus       396 ~~~~~~g~l~~~  407 (438)
T 3o7q_A          396 IVTPVMGFVSDA  407 (438)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.12  E-value=7.3e-11  Score=117.82  Aligned_cols=83  Identities=12%  Similarity=0.025  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      +.+.++++..+.++|.+...|...+++.|.++++      +|.++++++..+.++|..+++.+++++.++.||+..|.+.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            4677888899999999999999999999999765      3667899999999999999999999999989999999987


Q ss_pred             HHHHHHHHH
Q 012167          116 TATILLSIP  124 (469)
Q Consensus       116 ~v~~~i~~i  124 (469)
                      ++..++..+
T Consensus       161 ~~~~~~~~~  169 (375)
T 2gfp_A          161 LVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            777655444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.80  E-value=8.6e-08  Score=98.89  Aligned_cols=79  Identities=19%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc--------C
Q 012167           35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------K  106 (469)
Q Consensus        35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~--------~  106 (469)
                      .+.+.+++++++.++|.|+..|....+++|..+++      +|....+++..+..+|.+++..++..+...        .
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  197 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD  197 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence            46888999999999999999999999999998865      467788889999999999998887766543        2


Q ss_pred             CcchhHHHHHHHH
Q 012167          107 GWQWGFGISTATI  119 (469)
Q Consensus       107 g~~~~F~i~~v~~  119 (469)
                      .|+..+.+..+..
T Consensus       198 ~~~~~~~~~~~~~  210 (491)
T 4gc0_A          198 GWRYMFASECIPA  210 (491)
T ss_dssp             HHHHHHHTTHHHH
T ss_pred             hhHHHhhhhhhhh
Confidence            3555555544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.76  E-value=3.4e-09  Score=107.84  Aligned_cols=138  Identities=10%  Similarity=0.032  Sum_probs=89.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167          275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  354 (469)
Q Consensus       275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s  354 (469)
                      +.+++.+..++..++..++.+++.+|           +.+.+|.++.+++++..++.                     .+
T Consensus       264 ~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~---------------------~~  311 (417)
T 2cfq_A          264 VTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA---------------------TS  311 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------------CS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------------cc
Confidence            34455555555556666665443322           23556666666655443221                     13


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHH-HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167          355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  433 (469)
Q Consensus       355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n  433 (469)
                      .++++...++.+++.....+....++.+..|++.||+.+|+ +....++|+.+++.+.+.+.+..               
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------------  376 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------------  376 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence            44555555667777666667778899999999999999998 57778899999999988765311               


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167          434 HYHLERFYWLMCILGGLNFLHFLFWAAR  461 (469)
Q Consensus       434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~  461 (469)
                        .+...|.+.++++++..++++...++
T Consensus       377 --g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          377 --GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence              13456777788888777766655543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.43  E-value=3.4e-06  Score=85.47  Aligned_cols=144  Identities=11%  Similarity=-0.043  Sum_probs=103.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+...+..|+.+++.+++.||           +-+.+|.++.+++.+..++....                 .
T Consensus        65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----------------~  116 (451)
T 1pw4_A           65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T  116 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------c
Confidence            3445556666667777777776544332           34678888888888887762100                 0


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.+++.....+....++.+..|++.|+.++|++....++|..+++.+++.+....+     +|      
T Consensus       117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w------  185 (451)
T 1pw4_A          117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------  185 (451)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred             ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH------
Confidence            2456788889999999999999999999999999999999999999999999999999877543210     14      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                           ...|++.++++++..++.++..+
T Consensus       186 -----~~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          186 -----HAALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             -----TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhhcc
Confidence                 22456667777666655544444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.38  E-value=5.7e-06  Score=83.60  Aligned_cols=114  Identities=12%  Similarity=0.034  Sum_probs=91.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+..++..|+.+++.+++.||           +-+.+|.++.+++.+..+....                  .
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------~  114 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------I  114 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------T
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------c
Confidence            4455666666677788888776655443           3477888888888877643310                  1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  415 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  415 (469)
                      .+.++++...++.|++.....+....++.+..|++.|+.++|++....++|..+++.+++.+.
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788899999999999999999999999999999999999999999999999999988875

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.22  E-value=1.7e-05  Score=81.67  Aligned_cols=142  Identities=13%  Similarity=0.070  Sum_probs=106.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHH-hhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  351 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p-~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~  351 (469)
                      +++.+...+...+..|+.+++.++ +.||           +-+.+|.++.+++.+.+++.                    
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------  105 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP--------------------  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            456667777777888888888776 4443           23667777777777665432                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch--hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167          352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG  429 (469)
Q Consensus       352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~--~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~  429 (469)
                       .+.++++...++.++++....|....++.+..|++.  |+..++++....++|..+++.+++.+.+..      +|   
T Consensus       106 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~---  175 (491)
T 4aps_A          106 -FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY---  175 (491)
T ss_dssp             -CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH---
T ss_pred             -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH---
Confidence             245677888999999999999999999999999988  888889899999999999999998876421      24   


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                              ...|++.+++.++..+++++..+++.
T Consensus       176 --------~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          176 --------HVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHhCcccc
Confidence                    44566677777777766666655543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.04  E-value=2.7e-05  Score=80.84  Aligned_cols=142  Identities=13%  Similarity=0.044  Sum_probs=98.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167          274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  353 (469)
Q Consensus       274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  353 (469)
                      ++.+...+..++..++.+++.+++          ....+-+.+|.++.+++.+..++.                    +.
T Consensus        58 ~~~~~~~~~~~~~~~~~G~l~dr~----------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~  107 (524)
T 2xut_A           58 DVFHSFVIGVYFFPLLGGWIADRF----------FGKYNTILWLSLIYCVGHAFLAIF--------------------EH  107 (524)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHTTS----------SCSHHHHHHHHHHHHHHHHHHHHT--------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHHHHHHh--------------------cc
Confidence            344455555556666666665433          022234667777777777766543                    12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHH---HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCC
Q 012167          354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL---SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS  430 (469)
Q Consensus       354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl---~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~  430 (469)
                      +.++++...++.++++.+..|...+++.+..|++.|+..+++   +....++|..+++.+++.+.+..      +|    
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~----  177 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA----  177 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----
Confidence            567788889999999999999999999999999999877666   88888999999998887765311      23    


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167          431 NLNHYHLERFYWLMCILGGLNFLHFLFWAARY  462 (469)
Q Consensus       431 ~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~  462 (469)
                             ...|++.+++.++..+++++..+++
T Consensus       178 -------~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          178 -------AVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence                   4456667777666666555443333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.01  E-value=1.3e-05  Score=79.43  Aligned_cols=112  Identities=11%  Similarity=-0.006  Sum_probs=88.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.++..+...+..|+.+++.+++.||           +-+.+|.++.+++.+..++.                     
T Consensus        38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   85 (375)
T 2gfp_A           38 QSVMGAYLLTYGVSQLFYGPISDRVGRR-----------PVILVGMSIFMLATLVAVTT---------------------   85 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHTTSCCC-----------CCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence            3455666666677777777776544332           12347777777777776654                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      .+.++++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.+
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  149 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            2567788889999999999999999999999999999999999999999999999999887653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.27  E-value=0.0033  Score=64.17  Aligned_cols=123  Identities=11%  Similarity=0.042  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHH
Q 012167          280 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA  359 (469)
Q Consensus       280 ~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli  359 (469)
                      .+-.++..++.+++-+++.||           +-+.++.++..++-+.+++........... .  .-......+++.++
T Consensus        65 ~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-~--~~~~~~a~~~~~l~  130 (491)
T 4gc0_A           65 LIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPELGFTSINPD-N--TVPVYLAGYVPEFV  130 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-S--SCCGGGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhhhhhhhcch-h--HHHHHHhhhHHHHH
Confidence            344455556666666655554           235677777777766666432100000000 0  00000124677889


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167          360 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  416 (469)
Q Consensus       360 ~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  416 (469)
                      ...++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..++.....
T Consensus       131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            999999999999999999999999999999999999999999999998887766553

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.63  E-value=0.0051  Score=61.82  Aligned_cols=86  Identities=9%  Similarity=0.013  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167           37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS  115 (469)
Q Consensus        37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~  115 (469)
                      .+.+.+...+.+++.+.+.+...++..|.++++      .|..++.+ +..+.++|+.++|.++|++.++.||...|.+.
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~  385 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence            344445555566666666676777888888753      35566777 46677899999999999999988999999988


Q ss_pred             HHHHHHHHHHHHh
Q 012167          116 TATILLSIPIFLL  128 (469)
Q Consensus       116 ~v~~~i~~ii~~~  128 (469)
                      ++..+++.++.+.
T Consensus       386 ~~~~l~~~~~~~~  398 (417)
T 2cfq_A          386 GLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            8888777766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	469
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.41
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.0
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.47
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.89

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.8e-12  Score=126.78  Aligned_cols=87  Identities=9%  Similarity=0.089  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i  114 (469)
                      +.+.+++.+.+.++|.|...|...++++|.++++      +|..+++++..+.++|.++++.+++++... .+|+..|.+
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            4567888899999999999999999999999865      467889999999999999999988876554 589999998


Q ss_pred             HHHHHHHHHHHHHh
Q 012167          115 STATILLSIPIFLL  128 (469)
Q Consensus       115 ~~v~~~i~~ii~~~  128 (469)
                      .++..++..++.+.
T Consensus       189 ~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         189 PAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHH
Confidence            88777655544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=5.6e-09  Score=100.88  Aligned_cols=115  Identities=10%  Similarity=0.029  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhh
Q 012167          311 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS  390 (469)
Q Consensus       311 ~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g  390 (469)
                      .+-+.++.++.+++++..++.                     .+.++++...++.+++..+..+...+++.+..|++.|+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  347 (417)
T d1pv7a_         289 KNALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA  347 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred             ccchhhhHHHHHHhhhccccc---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH
Confidence            344667777776666655432                     35677788889999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167          391 LATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  463 (469)
Q Consensus       391 ~~~gl~-~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~  463 (469)
                      ..+|+. .+..++|..+++.+.+.+.+..                 .....|++.++++++..++.++..|+-+
T Consensus       348 ~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         348 TIYLVCFCFFKQLAMIFMSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999975 4667899999998888776522                 1345677888888888777777666543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=1.1e-06  Score=86.22  Aligned_cols=144  Identities=11%  Similarity=-0.049  Sum_probs=104.7

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167          273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  352 (469)
Q Consensus       273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  352 (469)
                      +++.+...+...+..|+.+++.+++.||           +-+.+|+++.+++.+..+++...                 .
T Consensus        62 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-----------------~  113 (447)
T d1pw4a_          62 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T  113 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh-----------------h
Confidence            4556666777777888888887655443           34668888888888877765311                 1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167          353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  432 (469)
Q Consensus       353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~  432 (469)
                      .+.++++...++.++++....+....++.+..|++.|+.++|++....++|..+++.+........     .+|-     
T Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~w~-----  183 (447)
T d1pw4a_         114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----NDWH-----  183 (447)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----CCST-----
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh-----hccc-----
Confidence            356678888999999999999999999999999999999999999999999999988777654321     1241     


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167          433 NHYHLERFYWLMCILGGLNFLHFLFWAA  460 (469)
Q Consensus       433 n~~~l~~~f~~la~l~l~~~l~~~~~~~  460 (469)
                            ..|++.++++++..++.+...+
T Consensus       184 ------~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         184 ------AALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             ------TCTHHHHHHHHHHHHHHHHHCC
T ss_pred             ------ccchhhhhhHHHHHHHHHHhcc
Confidence                  2345556666555555554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00042  Score=65.35  Aligned_cols=87  Identities=8%  Similarity=-0.037  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHH-HHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167           36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF-CLSCGALIAVTFVVWIEDNKGWQWGFGI  114 (469)
Q Consensus        36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~-~iNiGa~i~~~~~~~l~~~~g~~~~F~i  114 (469)
                      +.+.+++...+.+++.+...|...+++.|.++++      .|.+.++..+. +..+|..+++.++|++.+++||+..|.+
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            4677788888999999999999999999999865      35677887664 5679999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 012167          115 STATILLSIPIFLL  128 (469)
Q Consensus       115 ~~v~~~i~~ii~~~  128 (469)
                      .++..++..++..+
T Consensus       385 ~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         385 LGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877776665544