Citrus Sinensis ID: 012178

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
MQPCSSGGEMQGISSLLSNGSHEQQSQIHQSATFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQGGSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVRGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP
ccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccc
cccccccccHccHHccccccccccccHHcccccccccccHHHHHHHHccccccccHcccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccc
mqpcssggemqgissllsngsheqqsqihqsatfdptsqdDFLEQMlsslpscswtdlkspwgvvdlnpnnnnnninnkqprdlsdetapsttqennvpagfqfdESMILASKMRQHqisgntgsgnnnSAAAKFMMQQQQQQIMMAAARGgiglplslgnggdndivdvssfksqqggdgsvQALYNgftgslhgstqpqhfhhlqggsmpgqtfgapgpvmnqtqaqasgstgggggggntpaqqpkqrvrarrgqatdphSIAERLRRERIAERMKALQELvpnanktdkasMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLvadmssevrggdciqangrnpngaqttsandsltVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTatchsrnpiistsnnnnnngnphhnpllqsngegptspsmsVLTVQSatmgnggadgsvkdaasvskp
MQPCSSGGEMQGISSLLSNGSHEQQSQIHQSATFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQGGSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRvrarrgqatdphsiaerlRRERIAERMKALqelvpnanktdkaSMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVRGGDCIQANGRNPNgaqttsandsltVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATmgnggadgsvkdaasvskp
MQPCSSGGEMQGISSLLSNGSHEQQSQIHQSATFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLnpnnnnnninnKQPRDLSDETAPSTTQENNVPAGFQFDESMILASKMRQHQIsgntgsgnnnsaaakfmmqqqqqqimmaaaRGGIGLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQGGSMPGQTFGAPGPVMNQtqaqasgstgggggggNTPAQQPKQRVRARRGQATDPHSiaerlrreriaerMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRlggaaavaplvaDMSSEVRGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSnnnnnngnphhnpLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP
****************************************************CSWTDLKSPWGVV*************************************************************************************GGIGLPLSL*************************ALYNGF*********************************************************************************************************MLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAD************************************************MQYLQGKGLCLMPISLATAISTATCH****************************************************************
********************************************************************************************************D*************************************************************************************************************************************************************************AERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK*******************************************************************MQYLQGKGLCLMPISLATAISTATCHS***************************************************************
***********GISSLL***************TFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRD************NNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQGGSMPGQTFGAPGPVMNQTQ***********************************HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVRGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATMGN****************
************************************TSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNI**********************PAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIG********************************************************************************************QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADM***************************SLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATC*****************************************************************
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MQPCSSGGEMQGISSLLSNGSHEQQSQIHQSATFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQGGSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVRGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query469 2.2.26 [Sep-21-2011]
Q9ZUG9350 Transcription factor bHLH yes no 0.533 0.714 0.556 2e-73
Q8S3D5310 Transcription factor bHLH no no 0.484 0.732 0.569 1e-68
Q9LSQ3297 Transcription factor bHLH no no 0.441 0.696 0.617 4e-64
O22768310 Transcription factor UNE1 no no 0.351 0.532 0.645 1e-46
Q93Y00302 Transcription factor bHLH no no 0.324 0.503 0.638 3e-43
Q93W88286 Transcription factor bHLH no no 0.176 0.290 0.579 1e-20
Q9FJL4498 Transcription factor bHLH no no 0.155 0.146 0.671 8e-20
Q6NKN9366 Transcription factor bHLH no no 0.198 0.254 0.540 1e-19
Q9SRT2456 Transcription factor bHLH no no 0.138 0.142 0.727 2e-19
Q9CAA9486 Transcription factor bHLH no no 0.138 0.133 0.712 4e-19
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1 Back     alignment and function desciption
 Score =  276 bits (706), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/311 (55%), Positives = 202/311 (64%), Gaps = 61/311 (19%)

Query: 182 SVQALYNGFT--GSLHGSTQPQHFHHLQGGSMPGQTFGAPGPVMNQTQAQ-------ASG 232
           SV ALYNGF+  GSL     PQ               G+ G +MNQ           AS 
Sbjct: 76  SVHALYNGFSVAGSLPNFQIPQ---------------GSGGGLMNQQGQTQTQTQPQASA 120

Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 292
           ST  GG     P  Q + ++RARRGQATDPHSIAERLRRERIAERMKALQELVPN NKTD
Sbjct: 121 STATGGTVAAPP--QSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTD 178

Query: 293 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVRGGDCIQANGRNPNGA 352
           KASMLDEIIDYVKFLQLQVKVLSMSRLGGAA+V+  +++      GG    A+     G+
Sbjct: 179 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISE-----AGGSHGNASSAMVGGS 233

Query: 353 QTT-SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPII 411
           QT  ++NDS+T+TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNP+I
Sbjct: 234 QTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLI 293

Query: 412 STSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATM----GNGGADG--------- 458
                          P   ++  GP+ P++S +T+QS +     GNG  +G         
Sbjct: 294 ---------------PGAVADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSS 338

Query: 459 -SVKDAASVSK 468
            +VK+A SVSK
Sbjct: 339 IAVKEAVSVSK 349

Arabidopsis thaliana (taxid: 3702)
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1 Back     alignment and function description
>sp|O22768|UNE12_ARATH Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2 Back     alignment and function description
>sp|Q93Y00|BH007_ARATH Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1 Back     alignment and function description
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query469
255565001474 conserved hypothetical protein [Ricinus 0.918 0.909 0.644 1e-148
225445889519 PREDICTED: uncharacterized protein LOC10 0.946 0.855 0.601 1e-138
147836162486 hypothetical protein VITISV_021146 [Viti 0.791 0.763 0.672 1e-131
356530637452 PREDICTED: transcription factor bHLH66-l 0.867 0.900 0.606 1e-117
356556714475 PREDICTED: transcription factor bHLH66-l 0.889 0.877 0.550 1e-116
449457905422 PREDICTED: uncharacterized protein LOC10 0.814 0.905 0.518 1e-110
227345480386 roothairless1/slippery [Lotus japonicus] 0.767 0.932 0.576 1e-104
224143968251 predicted protein [Populus trichocarpa] 0.509 0.952 0.782 1e-101
357480123403 Transcription factor bHLH66 [Medicago tr 0.754 0.878 0.551 1e-101
357480125400 Transcription factor bHLH66 [Medicago tr 0.748 0.877 0.549 1e-100
>gi|255565001|ref|XP_002523493.1| conserved hypothetical protein [Ricinus communis] gi|223537200|gb|EEF38832.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 330/512 (64%), Positives = 362/512 (70%), Gaps = 81/512 (15%)

Query: 1   MQPCSSGGEMQGISSLLSNGS---------------------HEQQSQIHQSATFDPT-- 37
           MQPCS   EMQGI++LL+  S                      + Q+Q  Q+  FDP+  
Sbjct: 1   MQPCSR--EMQGINTLLNQSSTATTTSTSQIPIHHNHHHHHHQDLQNQQIQNPHFDPSPS 58

Query: 38  SQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENN 97
           S DDFLEQMLS+LPSCSW DLKSPW +          N+N  +PRDLSDET PS    NN
Sbjct: 59  SNDDFLEQMLSTLPSCSWADLKSPWDLT------TTANLNLPKPRDLSDETPPSLPDSNN 112

Query: 98  VPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAA----KFMMQQQQQQIMMAAARGGI 153
                 FDES++LASK+RQHQISG  G G  + AAA    K M+QQQ   +M AAARGG+
Sbjct: 113 NVGFHNFDESVLLASKLRQHQISGGGGGGGPSPAAAAAAAKLMLQQQL--MMAAAARGGL 170

Query: 154 GLPLSLGNGGDNDIVDVSSFKS-QQGGDGSVQALYNGF-TGSLHGSTQP--QHFHHLQGG 209
           G          ND++D   FKS  QGGDGSVQ LYNGF TGS+HG+ Q   QHFHH QGG
Sbjct: 171 G---------QNDVLD--GFKSPNQGGDGSVQGLYNGFGTGSMHGTGQSSNQHFHHPQGG 219

Query: 210 S--MPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAE 267
           +  M  Q FG+PG  M   Q QASGSTGG       PAQ P+QRVRARRGQATDPHSIAE
Sbjct: 220 AAAMQAQNFGSPGGAM-MNQPQASGSTGGA------PAQ-PRQRVRARRGQATDPHSIAE 271

Query: 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
           RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP
Sbjct: 272 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 331

Query: 328 LVADMSSEVRGGDCIQANG----------RNPNGAQTTSANDSLTVTEHQVAKLMEEDMG 377
           LVAD+SSE  GGDCIQAN           R  N +QT S+NDSLTVTEHQVAKLMEEDMG
Sbjct: 332 LVADISSE-GGGDCIQANANGAAGNGSLPRANNSSQTPSSNDSLTVTEHQVAKLMEEDMG 390

Query: 378 SAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPT 437
           SAMQYLQGKGLCLMPISLATAISTATCH+RN         N+  NP    LLQSNGEGP+
Sbjct: 391 SAMQYLQGKGLCLMPISLATAISTATCHNRN------TTTNSLLNPSR--LLQSNGEGPS 442

Query: 438 SPSMSVLTVQSATMGNGGADGSVKDAASVSKP 469
           SPSMSVLTVQSAT+GNGG D SVKDAASVSKP
Sbjct: 443 SPSMSVLTVQSATLGNGGLDPSVKDAASVSKP 474

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445889|ref|XP_002276403.1| PREDICTED: uncharacterized protein LOC100243222 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147836162|emb|CAN75431.1| hypothetical protein VITISV_021146 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530637|ref|XP_003533887.1| PREDICTED: transcription factor bHLH66-like [Glycine max] Back     alignment and taxonomy information
>gi|356556714|ref|XP_003546668.1| PREDICTED: transcription factor bHLH66-like [Glycine max] Back     alignment and taxonomy information
>gi|449457905|ref|XP_004146688.1| PREDICTED: uncharacterized protein LOC101211609 [Cucumis sativus] gi|449529094|ref|XP_004171536.1| PREDICTED: uncharacterized protein LOC101228749 [Cucumis sativus] Back     alignment and taxonomy information
>gi|227345480|gb|ACP28172.1| roothairless1/slippery [Lotus japonicus] Back     alignment and taxonomy information
>gi|224143968|ref|XP_002325140.1| predicted protein [Populus trichocarpa] gi|222866574|gb|EEF03705.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357480123|ref|XP_003610347.1| Transcription factor bHLH66 [Medicago truncatula] gi|355511402|gb|AES92544.1| Transcription factor bHLH66 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357480125|ref|XP_003610348.1| Transcription factor bHLH66 [Medicago truncatula] gi|355511403|gb|AES92545.1| Transcription factor bHLH66 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query469
UNIPROTKB|Q6EPZ6499 P0014G10.34 "BHLH transcriptio 0.543 0.511 0.517 6.5e-68
UNIPROTKB|Q6K8Y4463 OJ1695_H09.18 "Basic helix-loo 0.281 0.285 0.686 7.9e-64
TAIR|locus:2047555350 LRL1 "AT2G24260" [Arabidopsis 0.552 0.74 0.491 1.1e-58
TAIR|locus:2126624310 LRL2 "AT4G30980" [Arabidopsis 0.420 0.635 0.518 8.7e-54
TAIR|locus:2147760297 LRL3 "AT5G58010" [Arabidopsis 0.428 0.676 0.540 9.8e-50
TAIR|locus:2132303310 UNE12 "AT4G02590" [Arabidopsis 0.332 0.503 0.532 4e-37
UNIPROTKB|Q7Y1H4294 OSJNBa0094F01.11 "Putative unc 0.339 0.540 0.529 8.3e-35
TAIR|locus:2007534302 AT1G03040 "AT1G03040" [Arabido 0.330 0.513 0.508 1.7e-34
UNIPROTKB|Q6Z7E7524 P0020C11.18 "Putative bHLH tra 0.326 0.291 0.518 9.7e-33
UNIPROTKB|Q69Y51401 P0698A06.26-2 "Putative bHLH t 0.321 0.376 0.532 2.3e-32
UNIPROTKB|Q6EPZ6 P0014G10.34 "BHLH transcription factor PTF1-like protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 581 (209.6 bits), Expect = 6.5e-68, Sum P(3) = 6.5e-68
 Identities = 147/284 (51%), Positives = 167/284 (58%)

Query:   151 GGIGLPLSLGNGGDNDIVD--VSSFKSQQGGDGSVQALYNG-FTGSLHGSTQPQHFH-HL 206
             GG+ LPL+LG+GG    V   + +  +   G G    +Y G F GSLH   Q QHF  H 
Sbjct:   145 GGLLLPLTLGSGGSGGDVQALLKAAAANSAGGGDAGGVYGGGFAGSLH--QQQQHFQPHP 202

Query:   207 QGG-SMPGQTFGAPGPVMNQXXXXXXXXXX--XXXXXXNTPAQQPKQRVRARRGQATDPH 263
             Q   ++P Q+FG  G                         PA  P+QRVRARRGQATDPH
Sbjct:   203 QTAPTIPTQSFGGGGGGGGGGTASGGGAAQPQAGAAGGGAPAP-PRQRVRARRGQATDPH 261

Query:   264 SXXXXXXXXXXXXXMKALQELVPNANK---TDKASMLDEIIDYVKFLQLQVK-------- 312
             S             MKALQELVPNANK   TDKASMLDEIIDYVKFLQLQVK        
Sbjct:   262 SIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVKASTYTKLL 321

Query:   313 --VLSMSRXXXXXXXXXXXXDMSSEVRGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAK 370
               VLSMSR            DMSSE RGG    ANG    GA   + +DSLTVTE QVAK
Sbjct:   322 IHVLSMSRLGGAAAVAPLVADMSSEGRGGGA--ANG----GAPAAAGSDSLTVTEQQVAK 375

Query:   371 LMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTS 414
             LMEEDMG+AMQYLQGKGLCLMPISLA+AIS+ATCH R P+++ +
Sbjct:   376 LMEEDMGTAMQYLQGKGLCLMPISLASAISSATCHLRPPVVAAA 419
GO:0005634 "nucleus" evidence=IC
UNIPROTKB|Q6K8Y4 OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2047555 LRL1 "AT2G24260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147760 LRL3 "AT5G58010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132303 UNE12 "AT4G02590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Y1H4 OSJNBa0094F01.11 "Putative uncharacterized protein OSJNBa0094F01.11" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2007534 AT1G03040 "AT1G03040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z7E7 P0020C11.18 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69Y51 P0698A06.26-2 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017237001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (418 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query469
smart0035353 smart00353, HLH, helix loop helix domain 5e-14
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 7e-14
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 2e-12
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information 
 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 264 SIAERLRRERIAERMKALQELVPNAN---KTDKASMLDEIIDYVKFLQLQVK 312
           +  ER RR +I E    L+ L+P      K  KA +L   I+Y+K LQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 469
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.38
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.32
smart0035353 HLH helix loop helix domain. 99.31
KOG1318411 consensus Helix loop helix transcription factor EB 99.18
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.67
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.58
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.35
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 98.21
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 97.87
KOG0561 373 consensus bHLH transcription factor [Transcription 97.76
KOG4029228 consensus Transcription factor HAND2/Transcription 97.36
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.2
PLN0321793 transcription factor ATBS1; Provisional 97.0
KOG3910632 consensus Helix loop helix transcription factor [T 96.78
KOG4447173 consensus Transcription factor TWIST [Transcriptio 94.62
PLN02705 681 beta-amylase 92.99
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 89.64
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 89.52
KOG3898254 consensus Transcription factor NeuroD and related 88.35
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 88.28
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.38  E-value=4.2e-13  Score=101.85  Aligned_cols=53  Identities=38%  Similarity=0.631  Sum_probs=49.8

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHH
Q 012178          259 ATDPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQV  311 (469)
Q Consensus       259 ~~~~Hs~aERkRReKINerf~aLrsLVP~~---~K~DKASIL~eAIdYIK~LQ~qV  311 (469)
                      .+..|+..||+||++||+.|..|+.+||..   .|+||++||+.||+||++|+.++
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            356799999999999999999999999988   89999999999999999999876

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>PLN02705 beta-amylase Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query469
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 1e-16
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 7e-11
1hlo_A80 Protein (transcription factor MAX); transcriptiona 6e-09
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 1e-08
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 2e-08
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 7e-05
1a0a_A63 BHLH, protein (phosphate system positive regulator 2e-04
4f3l_A 361 Mclock, circadian locomoter output cycles protein 8e-04
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNAN-KTDKASMLDEIIDYVKFLQLQVKV 313
            RG+    H+  E+  R  I +++  L++LV     K +K+++L + IDY++FLQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 314 LSM 316
           L  
Sbjct: 62  LKQ 64
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query469
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.59
4ati_A118 MITF, microphthalmia-associated transcription fact 99.58
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.53
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.52
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.51
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.46
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.44
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.43
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.38
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.37
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.28
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.02
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.98
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.98
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.86
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.66
4ath_A83 MITF, microphthalmia-associated transcription fact 98.61
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.96
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.59  E-value=3.3e-16  Score=128.55  Aligned_cols=59  Identities=29%  Similarity=0.493  Sum_probs=56.1

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHHHHHHHhccc
Q 012178          260 TDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  318 (469)
Q Consensus       260 ~~~Hs~aERkRReKINerf~aLrsLVP~~-~K~DKASIL~eAIdYIK~LQ~qVk~Le~~r  318 (469)
                      +..|+++||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|+.+.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~   66 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN   66 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999998 899999999999999999999999999875
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 469
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 2e-14
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 2e-14
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 1e-13
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 3e-13
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 6e-13
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 9e-13
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 3e-12
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 3e-12
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 271 RERIAERMKALQELVPNAN-KTDKASMLDEIIDYVKFLQLQVKVLSM 316
           R  I +++  L++LV   + K  K+ +L + IDY+K+LQ     L  
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query469
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.49
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.45
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.44
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.4
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.38
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.31
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.9e-15  Score=119.19  Aligned_cols=59  Identities=29%  Similarity=0.493  Sum_probs=55.0

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHHHHHHHhccc
Q 012178          260 TDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  318 (469)
Q Consensus       260 ~~~Hs~aERkRReKINerf~aLrsLVP~~-~K~DKASIL~eAIdYIK~LQ~qVk~Le~~r  318 (469)
                      +..|+.+||+||++||+.|.+|+.|||++ .|++|++||.+||+||++|+.+++.|+.+.
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~   66 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34799999999999999999999999987 689999999999999999999999998764
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure