Citrus Sinensis ID: 012184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Secondary Structure (PSIPRED)
ccEEEEEccccEEcccEEEEEccccEEEEEEccccccccccccccccccccccccEEEEEEccEEEEEccccccccccEEEEEEEcccccEEEEcccccccccccccEEEEEccEEEEEccccccccccccEEEEEccccEEEEEEEcccccccccccEEEEEcccEEEEEcccccccccccEEEEEcccccEEEEEcccccccccccccEEEEccEEEEEEccccccccccEEEEEcccccEEEEcccccccccccccccEEEEEEEcccEEEEEccccccccccEEEEEccccccccccccccccccccccEEEcccccccccEEEcccccccccccccccccccccccccccccccHHHHHHcHHHHcccccHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEccccccEEEcccEEEEEccccEEEEcccccccccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEcccccEEEEcccccccccccccEEEEEEccEEEEEEccccccccccEEEEEcccccEEEEccccccccccccccEEEEEcccEEEEEEccccccccccEEEEcccccEEEEccccccccccccccEEEEEccEEEEEEccccccccccEEEEcccccEEEEEccccccccccccccccEEEEEEEccEEEEEEcccccccccEEEEcccccccccccccccccccccEEEEccEEEEEcccccccccccccccccccccccccccccHHHHHcccccHccccHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEccc
Coil and Loop (DISEMBL)
mllrcsirnyTLLEGVVMVFDLRSLAWSNLRLEteldadktedsgllevlppmsdhcmvkWGTKLLILgghykkssdSMIVRFIDLETNlcgvmetsgkvpvargghsvTLVGSRLIifggedrsrkllndvhfldletmtwdavevtqtppaprydhsaalHANRYLIVFGgcshsiffndlhvldlqtnewsqpeikgdlvtgraghagitidenwyivgggdnnngcQETIVLNMTKLAWSILTSvkgrnplaseglSVCSAIIEGEHHLVAfggyngkynnEVFVMrlkprdiprpkifqspAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Flexible Loop (DISEMBL)
mllrcsirnytLLEGVVMVFDLRSLAWSNLRLEteldadktedSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGkvpvargghsvtlVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrtdidaikedkrvlelsltevrtensrfrekideVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAtsvqtqgsggvWRWIAGGQ
Low Complexity Region (SEG)
MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPaaaaaaasvtaayalaKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Disordered region (IsUnstruct)
**LRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDAD***DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKS**LDI*******FAGI*******************************************************************RCFKLEAQI*******************************************GVWRWI****
Disordered Region (DISOPRED)
MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETEL********GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPR*******************YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAI**********************************************************************************************************RWIAGG*
Disordered Region (DISEMBL)
MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ************AAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDE*******************VAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS****************SGGVWRWIAGGQ
Disordered Region (DISPRO)
*LLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETEL*******SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDI**TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS******GGV********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTExxxxxxxxxxxxxxxxxxxxxLSSVQGQLVAERSRCFKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTQGSGGVWRWIAGGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	469	2.2.26 [Sep-21-2011]
Q9MA55	668	Acyl-CoA-binding domain-c	no	no	0.950	0.667	0.457	1e-113
Q8RWD9	648	Acyl-CoA-binding domain-c	no	no	0.923	0.668	0.445	1e-106
Q7M3S9	943	RING finger protein B OS=	no	no	0.366	0.182	0.383	1e-22
P87061	1147	Tip elongation aberrant p	yes	no	0.520	0.212	0.268	7e-20
A8JAM0	1159	Coiled-coil domain-contai	N/A	no	0.409	0.165	0.304	1e-17
P80197	737	Actin-fragmin kinase OS=P	N/A	no	0.345	0.219	0.313	8e-17
Q5EA50	372	Rab9 effector protein wit	yes	no	0.383	0.483	0.270	2e-16
Q5ZJ37	371	Rab9 effector protein wit	yes	no	0.430	0.544	0.267	1e-15
Q80YG3	406	Kelch domain-containing p	yes	no	0.473	0.546	0.280	2e-15
O14248	1125	Tip elongation aberrant p	no	no	0.345	0.144	0.283	5e-15

>sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/457 (45%), Positives = 306/457 (66%), Gaps = 11/457 (2%)

Query: 15  GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 74
           G + V DL+S  WS  R+ET++ A +++++    +L P + H ++ W  KLL +GGH K 
Sbjct: 209 GDLHVLDLKSWTWS--RVETKV-ATESQETSTPTLLAPCAGHSLIAWDNKLLSIGGHTKD 265

Query: 75  SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 134
            S+SM V+  D  T    +++T GK PV+RGG SVT+VG  L+IFGG+D  R LLND+H 
Sbjct: 266 PSESMQVKVFDPHTITWSMLKTYGKPPVSRGGQSVTMVGKTLVIFGGQDAKRSLLNDLHI 325

Query: 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194
           LDL+TMTWD ++     P+PR DH+AA+HA R+L++FGG SH+  F+DLHVLDLQT EWS
Sbjct: 326 LDLDTMTWDEIDAVGVSPSPRSDHAAAVHAERFLLIFGGGSHATCFDDLHVLDLQTMEWS 385

Query: 195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP 254
           +P  +GD  T RAGHAG+TI ENW+IVGGGDN +G  E++VLNM+ LAWS++ SV+GR P
Sbjct: 386 RPAQQGDAPTPRAGHAGVTIGENWFIVGGGDNKSGASESVVLNMSTLAWSVVASVQGRVP 445

Query: 255 LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS 314
           LASEGLS+  +   GE  LVAFGGYNG+YNNE+ +++   +   + K  ++P   + +A 
Sbjct: 446 LASEGLSLVVSSYNGEDVLVAFGGYNGRYNNEINLLKPSHKSTLQTKTLEAPLPGSLSAV 505

Query: 315 VTAAYALAKSEKLDIPKTLSSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEV 370
             A     +SE +++ +    +   + N       E +    I  IK +K  LE SL + 
Sbjct: 506 NNATTRDIESE-VEVSQEGRVREIVMDNVNPGSKVEGNSERIIATIKSEKEELEASLNKE 564

Query: 371 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE 430
           R +  + R+++ E    +++L KEL SV+GQL AE+SRCFKLE  +AEL++ L++ +T++
Sbjct: 565 RMQTLQLRQELGEAELRNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTLETLQ 624

Query: 431 NEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAG 467
            E+++L++QK+A EQ    A + + QGSGGVW W+AG
Sbjct: 625 KELELLQRQKAASEQA---AMNAKRQGSGGVWGWLAG 658

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1

 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/453 (44%), Positives = 293/453 (64%), Gaps = 20/453 (4%)

Query: 15  GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 74
           G + V DL++  WS  R+ET++     E S   + L   + H ++ W  +LL +GGH K 
Sbjct: 210 GDLHVLDLKNWTWS--RVETKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKD 266

Query: 75  SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 134
            S+SM V   DL      +++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H 
Sbjct: 267 PSESMPVMVFDLHCCSWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHI 326

Query: 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194
           LDL+TMTW+ ++   +PP PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS
Sbjct: 327 LDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWS 386

Query: 195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP 254
           +   +GD  T RAGHAG+TI ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   P
Sbjct: 387 RHTQQGDAPTPRAGHAGVTIGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVP 446

Query: 255 LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS 314
           LASEGLS+  +   GE  +VAFGGYNG YNNEV V++   +   + KI  + A   + ++
Sbjct: 447 LASEGLSLVVSSYNGEDIVVAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSA 506

Query: 315 VTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 374
           V  A         DI   +  K  G  + +        I  +K +K  +E SL + + + 
Sbjct: 507 VNNATT------RDIESEI--KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQT 550

Query: 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQ 434
            + +E++ E+++ ++EL KEL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E++
Sbjct: 551 LQLKEELAEIDTRNTELYKELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELE 610

Query: 435 ILRQQKSAFEQEMERATSVQTQGSGGVWRWIAG 467
           +L++Q+ A   E     + + Q SGGVW W+AG
Sbjct: 611 LLQRQR-AVASEQAATMNAKRQSSGGVWGWLAG 642

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 91/180 (50%), Gaps = 8/180 (4%)

Query: 56  HCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS 114
           H  V +   L++ GGH   KS     V    LE+N        G +P AR  HS   V +
Sbjct: 131 HTAVVYRQNLVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCGGVIPSARATHSTFQVNN 190

Query: 115 -RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173
            ++ IFGG D  +K  ND+++LDLET  W  VE   TPP PR  HSA +  N  L++FGG
Sbjct: 191 NKMFIFGGYD-GKKYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGG 249

Query: 174 C-SHSIFFNDLHVLDLQ-TNE--WSQPEIKG-DLVTGRAGHAGITIDENWYIVGGGDNNN 228
           C S S F ND+H+L ++  NE  W QP   G ++   R  H    I    YI  G  + N
Sbjct: 250 CGSDSNFLNDIHILHIEGANEYRWEQPSYLGLEIPQARFRHTTNFIGGRVYIYAGTGSGN 309

Dictyostelium discoideum (taxid: 44689)

>sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 20/264 (7%)

Query: 45  GLLEVLPPMS--DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV 102
           G   VLP  S   H   + G ++ I GG    S     +  ++L T+    + + G+ P 
Sbjct: 73  GSSNVLPRYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPS 132

Query: 103 ARGGHSVTLVGSRLIIFGG---EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159
            R GH+  L+G+  I+FGG    D + +  N ++ L+  ++ W     +   P+ RY H+
Sbjct: 133 PRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHT 192

Query: 160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQT-----NEWSQPEIKGDLVTGRAGHAGITI 214
            +   ++ + +FGG     +FNDL   DL       + W    +  D    RAGH   T 
Sbjct: 193 ISCLGSK-ICLFGGRLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTF 251

Query: 215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEGEHHL 273
            +  YI GG D  N   +    +  + AWS + +     NP A    SV   I      L
Sbjct: 252 SDKLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGI------L 305

Query: 274 VAFGGY--NGKYNNEVFVMRLKPR 295
             FGG   +G + N+++  RL  +
Sbjct: 306 YVFGGRASDGTFLNDLYAFRLSSK 329

Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A8JAM0|CC135_CHLRE Coiled-coil domain-containing protein lobo homolog (Fragment) OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 15/207 (7%)

Query: 56  HCMVKWGTKLLILGGHYKKSSDS------MIVRFIDLETNLCGVMETSGKVPVARGGHSV 109
           H + + G+ LLI GG  +K   +      M +  ++     C      G+ P  R  H+ 
Sbjct: 301 HTLTQVGSMLLIFGGQLQKDGSTTNDLFWMTMDRMEWHNQPC-----KGEKPPPRYNHAA 355

Query: 110 TL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY 167
                 +RL++FGG    RK LND++FLDL++ TW       T P PR    A   A   
Sbjct: 356 CYDEENNRLVVFGGRTAERKRLNDIYFLDLDSWTWFKPSTEGTAPTPREQAVATFWAGS- 414

Query: 168 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 227
           +++FGG +     NDL +LDL   +WSQP   G   + R   A      N   V GG NN
Sbjct: 415 MVLFGGHAIGGRTNDLFLLDLGAWQWSQPAFSGTAPSPRQACALCIGHGNLLFVHGGRNN 474

Query: 228 NGCQETIVLNMTKLAWSILTSVKGRNP 254
              ++  V++     W+ +   +GR P
Sbjct: 475 FVLEDLHVMDFVSKNWTEI-PCEGRVP 500

May play a role in the regulation of germ cells differentiation, particularly during meiosis and spermiogenesis (By similarity). May be involved in sperm motility.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P80197|AFK_PHYPO Actin-fragmin kinase OS=Physarum polycephalum PE=1 SV=2

 Score = 89.0 bits (219), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 52  PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL 111
           P   H  V +  KL + GG   K++ +    F D       ++   G+ P  R GHS T+
Sbjct: 419 PRRYHSGVLYEGKLYVFGGVCIKTASNDFYVF-DFAKKKWSIVVAQGEAPSPRCGHSATV 477

Query: 112 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP--PAPRYDHSAALHANRYLI 169
            G ++ IFGG + +++  +D++  D    TW+ +E T+    P+PRY HSA L     L 
Sbjct: 478 YGGKMWIFGGHNNNKQPYSDLYTFDFAKSTWEKIEPTKDGPWPSPRYHHSATL-VGASLY 536

Query: 170 VFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 217
           +FGG  H S + ND++V     N+W      G+    RAG   +T++ N
Sbjct: 537 IFGGAEHKSKYHNDVYVYKFDANQWELLNATGETPEPRAGQ--MTVEWN 583

Has a role in the regulation of microfilament formation. Phosphorylates the actin-fragmin complex on threonine residues, in vitro.

Physarum polycephalum (taxid: 5791)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 5/185 (2%)

Query: 65  LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGED 123
           + + GG   +S +   ++ ++ +T      E +G  P  R  H S   +G +L +FGG +
Sbjct: 101 IWVFGG-ADQSGNRNCLQVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGE 159

Query: 124 RSRKLLNDV--HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFN 181
           R  + + DV  H  D  T+TW   E    PP+PR+ H   + A   L + GG +   F++
Sbjct: 160 RGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGH-VMVAAGTKLFIHGGLAGDNFYD 218

Query: 182 DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 241
           DLH +D+   +W +    G   TG A H+ + + ++ Y+ GG             ++ K 
Sbjct: 219 DLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQ 278

Query: 242 AWSIL 246
            W++L
Sbjct: 279 HWTLL 283

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Bos taurus (taxid: 9913)

>sp|Q5ZJ37|RABEK_CHICK Rab9 effector protein with kelch motifs OS=Gallus gallus GN=RABEPK PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 22/224 (9%)

Query: 26  AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFID 85
           AWS LR   E        + L    PP           +L + GG ++  + S  V+ +D
Sbjct: 77  AWSGLRPRYE------HATFLSACRPP-----------RLWVFGGAHRAGNRS-CVQVLD 118

Query: 86  LETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLND--VHFLDLETMTW 142
            E       E +G  P+ R  H S   +G  L +FGG D+  + + D  +H  D   + W
Sbjct: 119 PEIGTWESPEVTGIPPLPRTFHTSSAAIGDCLYVFGGGDKGAEPVKDQQLHVFDTVALAW 178

Query: 143 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 202
              +    PP+PR+ H       + L + GG +  IF+NDL  +D    +W +    GD+
Sbjct: 179 TQPDTHGDPPSPRHGHVVVAVGTK-LFIHGGLAGDIFYNDLFCIDTTDMKWVKIAATGDV 237

Query: 203 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 246
             GRA H+     ++ YI GG   +     T   ++ +  W++L
Sbjct: 238 PGGRASHSSAVFKDHLYIFGGIGPDGTLDTTYKYHIEEQQWTLL 281

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Gallus gallus (taxid: 9031)

>sp|Q80YG3|KLDC1_MOUSE Kelch domain-containing protein 1 OS=Mus musculus GN=Klhdc1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 38/260 (14%)

Query: 54  SDHCMVKWGTKLLILGGHYKKSSDSMIVR-----FIDLETNLCGVMETSGKVPVARGGHS 108
           S HC V  G  L + GG+     + + +        D+++ L  +    G++P +  G  
Sbjct: 14  SGHCAVVDGHFLYVWGGYVSIEDNEVYLPNDEMWTYDIDSGLWKMHLMEGELPPSMSGSC 73

Query: 109 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAV-EVTQTPPAPRYDHSAALH 163
              +  RL +FGG D  +   N ++F++L T     TW+ + +    PP PR   S  ++
Sbjct: 74  GACIHGRLYVFGGYD-DKGYSNRLYFVNLRTRDGTYTWEKITKFDGQPPTPRDKLSCWVY 132

Query: 164 ANRYLIVFGGCSH-------------------SIFF---NDLHVLDLQTNEWSQPEIKGD 201
            +R LI FGG  +                    IF+   ND+HV D +T  WSQPEIKG 
Sbjct: 133 KDR-LIYFGGYGYRRHSELQECFDVHDASWEEQIFWGWHNDVHVFDTKTRTWSQPEIKGG 191

Query: 202 LVT-GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGL 260
           +    RA H+   +    Y+ GG        +   LN+    WS   SV G +P      
Sbjct: 192 VPPQPRAAHSCAVLGNKGYVFGGRVLQTRMNDLHYLNLDTWVWSGRISVNGESP-KHRSW 250

Query: 261 SVCSAIIEGEHHLVAFGGYN 280
              +AI + +  L  FGG N
Sbjct: 251 HTLTAITDDK--LFLFGGLN 268

Mus musculus (taxid: 10090)

>sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea3 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 32/194 (16%)

Query: 85  DLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM---- 140
           + ++N   ++ T   +P  R GHS+ LV S+L IFGGE +  K LND+H  D + +    
Sbjct: 150 NFKSNQWNLVSTQSPLPSPRTGHSMLLVDSKLWIFGGECQG-KYLNDIHLFDTKGVDRRT 208

Query: 141 -------------------------TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS 175
                                    +W+   +  + P PR +HS  L   + + V GG +
Sbjct: 209 QSELKQKANANNVEKANMEFDETDWSWETPFLHSSSPPPRSNHSVTLVQGK-IFVHGGHN 267

Query: 176 HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC-QETI 234
            +   +DL + DL+T  W++    G     R GH   TID+  YI GG DN      E  
Sbjct: 268 DTGPLSDLWLFDLETLSWTEVRSIGRFPGPREGHQATTIDDTVYIYGGRDNKGLILNELW 327

Query: 235 VLNMTKLAWSILTS 248
             N ++  WS++++
Sbjct: 328 AFNYSQQRWSLVSN 341

Acts as a cell end marker required for efficient new end take-off (NETO), whereby growth is activated at the cell end to generate bipolarity in extending cells. Also required for proper placement of the septum.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
224113141	512	predicted protein [Populus trichocarpa]	0.957	0.876	0.756	0.0
225448900	508	PREDICTED: acyl-CoA-binding domain-conta	0.959	0.885	0.722	0.0
255583742	512	acyl-CoA binding protein, putative [Rici	0.842	0.771	0.770	1e-171
449465316	509	PREDICTED: acyl-CoA-binding domain-conta	0.953	0.878	0.665	1e-170
15237715	514	kelch repeat-containing protein [Arabido	0.946	0.863	0.664	1e-169
15724206	514	AT5g04420/T32M21_20 [Arabidopsis thalian	0.946	0.863	0.662	1e-168
297810527	514	kelch repeat-containing protein [Arabido	0.946	0.863	0.664	1e-166
356576361	504	PREDICTED: acyl-CoA-binding domain-conta	0.953	0.886	0.632	1e-164
115449833	519	Os02g0822800 [Oryza sativa Japonica Grou	0.955	0.863	0.520	1e-126
357137701	523	PREDICTED: acyl-CoA-binding domain-conta	0.950	0.852	0.512	1e-121

>gi|224113141|ref|XP_002316404.1| predicted protein [Populus trichocarpa] gi|222865444|gb|EEF02575.1| predicted protein [Populus trichocarpa]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/451 (75%), Positives = 387/451 (85%), Gaps = 2/451 (0%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 76
           V VFD R L WS+L+L++E D  K+E++G  EVLP  SDH MVKWG KLL+LGGH K +S
Sbjct: 64  VQVFDFRGLVWSSLKLKSEADGGKSEENGAQEVLPATSDHSMVKWGNKLLLLGGHSKTTS 123

Query: 77  DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 136
           DSM VRFIDLET+ CG +ETSG  PVARGGHSVTLVGSRLIIFGGEDR+R+LLNDV+ LD
Sbjct: 124 DSMTVRFIDLETHACGFIETSGNAPVARGGHSVTLVGSRLIIFGGEDRNRRLLNDVYALD 183

Query: 137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 196
           LETMTWD V   QTPPAPR+DH+AA++   YL++FGGCSHSIFFNDLHVLDLQT EWSQP
Sbjct: 184 LETMTWDVVVARQTPPAPRFDHTAAINREHYLLIFGGCSHSIFFNDLHVLDLQTMEWSQP 243

Query: 197 EIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLA 256
           E++GDLVT RAGHAG+TI ENWYIVGGGDN NGC ET+VLNM+KL WS LTSVK R+PLA
Sbjct: 244 EVQGDLVTPRAGHAGVTIGENWYIVGGGDNKNGCPETLVLNMSKLTWSALTSVKERDPLA 303

Query: 257 SEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVT 316
           SEGLSVCSA+I GE HLVAFGGYNGKYNNEVFVMRLKP D+ RPKIFQSPAAAAAAASVT
Sbjct: 304 SEGLSVCSALINGERHLVAFGGYNGKYNNEVFVMRLKPSDVSRPKIFQSPAAAAAAASVT 363

Query: 317 AAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSR 376
           AAYALAKSEKLD   +L+    G+GN+ SE D+  +IDA+KE+K+ LEL LTEVR ENSR
Sbjct: 364 AAYALAKSEKLDF-SSLNLNSNGVGNNPSELDLAFEIDALKEEKKELELFLTEVRAENSR 422

Query: 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQIL 436
             EK+DEVN TH+ELSKEL SVQGQL AERSRCFKLEAQIAELQK+LES Q+IENEVQ+L
Sbjct: 423 LTEKVDEVNGTHAELSKELHSVQGQLAAERSRCFKLEAQIAELQKILESLQSIENEVQLL 482

Query: 437 RQQKSAFEQEMERATSVQTQGSGGVWRWIAG 467
           R+QKSA EQE+ER ++ Q QGSGGVWRWIAG
Sbjct: 483 RRQKSALEQEIER-SAAQRQGSGGVWRWIAG 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448900|ref|XP_002264719.1| PREDICTED: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|296085942|emb|CBI31383.3| unnamed protein product [Vitis vinifera]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/451 (72%), Positives = 377/451 (83%), Gaps = 1/451 (0%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 76
           V VFDLRSLAWS L+L+ E +ADK E++ L EV P  S H M+KWG KLLILGGH K SS
Sbjct: 55  VQVFDLRSLAWSALKLKMESNADKVEENNLQEVFPATSGHNMIKWGNKLLILGGHSKNSS 114

Query: 77  DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 136
           D + VR IDLET  CGV++TSGKVPVARGG SVTLVGSRLI+FGGEDRSR LLNDVH LD
Sbjct: 115 DGVTVRAIDLETQQCGVIKTSGKVPVARGGQSVTLVGSRLIMFGGEDRSRHLLNDVHVLD 174

Query: 137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 196
           L+TMTWD VE TQTPPAPR+DH+AA+HA RYL++FGGCSHSIFFNDLH+LDLQT EWSQP
Sbjct: 175 LDTMTWDVVEATQTPPAPRFDHTAAVHAERYLLIFGGCSHSIFFNDLHILDLQTMEWSQP 234

Query: 197 EIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLA 256
           +I+GDLVT RAGHAG TIDENWYIVGGGDN +G  ET+V NM+KL WS+LT VK R+PLA
Sbjct: 235 QIQGDLVTPRAGHAGTTIDENWYIVGGGDNRSGTPETLVFNMSKLGWSVLTRVKERDPLA 294

Query: 257 SEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVT 316
           SEGL+VCSA + GE HLV FGGYNGKYNNEVF+M+ KP D  RPKIFQSPAAAAAAASVT
Sbjct: 295 SEGLNVCSASVNGEKHLVTFGGYNGKYNNEVFIMKPKPTDSTRPKIFQSPAAAAAAASVT 354

Query: 317 AAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSR 376
           AAYALAKSEKLD  +T  S F G+  + S +D   +I+AI+E+ +VLE S+ EV+ ENSR
Sbjct: 355 AAYALAKSEKLDFIETEDSNFGGVKENNSAQDFSIEINAIREENKVLESSVAEVKAENSR 414

Query: 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQIL 436
            +EKID++N T++ELSKEL SVQGQLV ERSRC KLEAQIAELQKMLE+ Q+IE+EVQ+L
Sbjct: 415 LKEKIDDINGTYAELSKELHSVQGQLVVERSRCSKLEAQIAELQKMLETLQSIEDEVQLL 474

Query: 437 RQQKSAFEQEMERATSVQTQGSGGVWRWIAG 467
           R+QKS  E+ ME A + Q QGSGGVWRWIAG
Sbjct: 475 RRQKSMLERNMEVA-AAQRQGSGGVWRWIAG 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583742|ref|XP_002532624.1| acyl-CoA binding protein, putative [Ricinus communis] gi|223527644|gb|EEF29755.1| acyl-CoA binding protein, putative [Ricinus communis]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/401 (77%), Positives = 348/401 (86%), Gaps = 6/401 (1%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 76
           V VFDLRS  WS+L+L+T+L ADK E++GL EVLP  SDH MV+W  KLL+LGGH KKSS
Sbjct: 64  VQVFDLRSSVWSSLKLKTDLHADKVEENGLQEVLPATSDHSMVQWENKLLLLGGHSKKSS 123

Query: 77  DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 136
           D   +RFIDLET+ CGVMETSGK PVARGGHS TLVGSRLI+FGGED SR+LLND++ LD
Sbjct: 124 D---MRFIDLETHHCGVMETSGKAPVARGGHSATLVGSRLIVFGGEDGSRRLLNDLYALD 180

Query: 137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 196
           LE MTWD +E TQTPPAPR+DH+A +HA RYLIVFGGCSHSIFFNDLHVLDLQT EWSQP
Sbjct: 181 LEKMTWDVLETTQTPPAPRFDHTATIHAERYLIVFGGCSHSIFFNDLHVLDLQTMEWSQP 240

Query: 197 EIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLA 256
           E +GDLVT RAGHAGI IDENWYIVGGGDN NGC ET+VLNM+KLAWS LT+VKGR+PLA
Sbjct: 241 ETRGDLVTPRAGHAGIAIDENWYIVGGGDNKNGCPETLVLNMSKLAWSTLTNVKGRDPLA 300

Query: 257 SEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVT 316
           SEGLSVCS +I+GE HLVAFGGYNGKYNNEVF+MRLKPRD+ RPKIFQSPAAAAAAASVT
Sbjct: 301 SEGLSVCSTLIDGEKHLVAFGGYNGKYNNEVFIMRLKPRDMLRPKIFQSPAAAAAAASVT 360

Query: 317 AAYALAKSEKLDIPK-TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENS 375
           AAYALAKSEKLD     L+S+   + +  SE+D+ ++IDAIKEDK+VLE+SL EVR ENS
Sbjct: 361 AAYALAKSEKLDFSNINLNSR--EVESHPSEQDITSEIDAIKEDKKVLEMSLAEVRAENS 418

Query: 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416
           R REKIDEVNSTH+ELSKEL SVQGQLVAERSRCFKLE  +
Sbjct: 419 RLREKIDEVNSTHAELSKELHSVQGQLVAERSRCFKLEKSL 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465316|ref|XP_004150374.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] gi|449523517|ref|XP_004168770.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 304/457 (66%), Positives = 369/457 (80%), Gaps = 10/457 (2%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSG-LLEVLPPMSDHCMVKWGTKLLILGGHYKKS 75
           V V DL +L+WS+++L+     + ++ +G L+E LPP S H MVKW  KL++LGG+ K+S
Sbjct: 55  VQVLDLSNLSWSSVKLQMNPGVENSDGNGSLVEALPPASGHSMVKWDKKLIVLGGNLKRS 114

Query: 76  SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135
           SD ++V  IDLET+   VMET+G +PVAR GHS TL GS++++FGGED SRKLLND+H L
Sbjct: 115 SDRILVHCIDLETHTWSVMETTGNIPVARAGHSATLFGSKIMMFGGEDSSRKLLNDIHVL 174

Query: 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 195
           DLE +TWD VE  Q+PPAPR+DH+AALHA  YL+VFGGCSHS FF DLHVLD  T EWSQ
Sbjct: 175 DLEALTWDEVETKQSPPAPRFDHTAALHAEHYLLVFGGCSHSAFFRDLHVLDFHTMEWSQ 234

Query: 196 PEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL 255
           P+++GDLVT RAGHAGITIDENWYIVGGGDN NGC ETIVLNM+KL+W  L SVK R PL
Sbjct: 235 PQLQGDLVTPRAGHAGITIDENWYIVGGGDNKNGCPETIVLNMSKLSWLALRSVKQREPL 294

Query: 256 ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASV 315
           ASEG+S+  A I+ E +LVAFGGYNGKYNNEVFVMR KPRD  RPKIFQSPAAAAAAASV
Sbjct: 295 ASEGISISLATIDQEKYLVAFGGYNGKYNNEVFVMRPKPRDSSRPKIFQSPAAAAAAASV 354

Query: 316 TAAYALAKSEKLDIPKTLSSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEVR 371
           TAAYALAK+EKLD      S   G+ N    + S+ +   ++ AI+E+K  LEL+L+EV+
Sbjct: 355 TAAYALAKTEKLDF-----SMIEGVSNGRHQNHSQPNGAIELKAIREEKAKLELTLSEVQ 409

Query: 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 431
           +ENS+ +++IDEVNSTH+ELSKEL SVQ QL+AERSRCFKLEAQIAELQKMLES Q+IEN
Sbjct: 410 SENSKLKQEIDEVNSTHAELSKELQSVQSQLIAERSRCFKLEAQIAELQKMLESMQSIEN 469

Query: 432 EVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGG 468
           E+ +LR+QKSA E+ ME A++VQ QGSGGVWRWIAGG
Sbjct: 470 EIHLLREQKSALEKHMEAASTVQRQGSGGVWRWIAGG 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237715|ref|NP_196062.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326940|ref|NP_001031832.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326969|ref|NP_001031833.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|7406446|emb|CAB85548.1| putative protein [Arabidopsis thaliana] gi|53850551|gb|AAU95452.1| At5g04420 [Arabidopsis thaliana] gi|63003778|gb|AAY25418.1| At5g04420 [Arabidopsis thaliana] gi|222424058|dbj|BAH19990.1| AT5G04420 [Arabidopsis thaliana] gi|332003357|gb|AED90740.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003358|gb|AED90741.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003359|gb|AED90742.1| kelch repeat-containing protein [Arabidopsis thaliana]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/450 (66%), Positives = 370/450 (82%), Gaps = 6/450 (1%)

Query: 17  VMVFDLRSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHY 72
           V VFDLRSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH 
Sbjct: 62  VQVFDLRSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHS 121

Query: 73  KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV 132
           KKSSD+M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+
Sbjct: 122 KKSSDNMLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDL 181

Query: 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192
           H L LETMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT E
Sbjct: 182 HVLHLETMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTME 241

Query: 193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR 252
           WSQP ++GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R
Sbjct: 242 WSQPHVQGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEAR 301

Query: 253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAA 312
           +PLASEGLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAA
Sbjct: 302 HPLASEGLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAA 361

Query: 313 ASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRT 372
           ASVTAAYA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + 
Sbjct: 362 ASVTAAYAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQV 421

Query: 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 432
           EN++ REKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE E
Sbjct: 422 ENAKLREKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAE 481

Query: 433 VQILRQQKSAFEQEMERATSVQTQGSGGVW 462
           V++LR+Q+SA ++E +   +VQ QGS GVW
Sbjct: 482 VEMLRRQRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15724206|gb|AAL06496.1|AF412043_1 AT5g04420/T32M21_20 [Arabidopsis thaliana]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/450 (66%), Positives = 369/450 (82%), Gaps = 6/450 (1%)

Query: 17  VMVFDLRSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHY 72
           V VFDLRSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH 
Sbjct: 62  VQVFDLRSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHS 121

Query: 73  KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV 132
           KKSSD+M+VRFIDLET+ CGV++  G VP +R GHS+TLVGSR+++FGGED++R+LLND+
Sbjct: 122 KKSSDNMLVRFIDLETHSCGVIDVFGNVPASRDGHSITLVGSRVLVFGGEDKNRRLLNDL 181

Query: 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192
           H L LETMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT E
Sbjct: 182 HVLHLETMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTME 241

Query: 193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR 252
           WSQP ++GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R
Sbjct: 242 WSQPHVQGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEAR 301

Query: 253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAA 312
           +PLASEGLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAA
Sbjct: 302 HPLASEGLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAA 361

Query: 313 ASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRT 372
           ASVTAAYA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + 
Sbjct: 362 ASVTAAYAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQV 421

Query: 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 432
           EN++ REKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE E
Sbjct: 422 ENAKLREKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAE 481

Query: 433 VQILRQQKSAFEQEMERATSVQTQGSGGVW 462
           V++LR+Q+SA ++E +   +VQ QGS GVW
Sbjct: 482 VEMLRRQRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810527|ref|XP_002873147.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318984|gb|EFH49406.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 299/450 (66%), Positives = 367/450 (81%), Gaps = 6/450 (1%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKT--EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHY 72
           V VFDL SL WS+L+L TE  + +   ED G  L E  P +SDH M+KWG  LL++GGH 
Sbjct: 62  VQVFDLTSLTWSSLKLITESSSAENIQEDDGSSLREAFPAISDHRMIKWGNMLLLIGGHS 121

Query: 73  KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV 132
           KKSSD++ VRFIDLET+LCGV + SG VP +RGGHS+TLVGSR+++FGGED++R+LLND+
Sbjct: 122 KKSSDNISVRFIDLETHLCGVFDVSGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDL 181

Query: 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192
           H LDLETMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT E
Sbjct: 182 HVLDLETMTWDIVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTME 241

Query: 193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR 252
           WSQP ++GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R
Sbjct: 242 WSQPHVQGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEAR 301

Query: 253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAA 312
           +PLASEGLSVCSA + GE+ LVAFGGYNGKYNN+++VM LKP +   PKIF+SPAAAAAA
Sbjct: 302 HPLASEGLSVCSASVFGENILVAFGGYNGKYNNDIYVMILKPGESSHPKIFKSPAAAAAA 361

Query: 313 ASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRT 372
           ASVTAAYA+AKS+K D P   +    GIG+ L E+D+R  ID IKE+KR LE S+ E + 
Sbjct: 362 ASVTAAYAIAKSDKSDYPPPANPTLNGIGSSLPERDIRNRIDTIKEEKRSLESSVAETQV 421

Query: 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 432
           EN++ REKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE E
Sbjct: 422 ENAKLREKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAE 481

Query: 433 VQILRQQKSAFEQEMERATSVQTQGSGGVW 462
           V++LR+Q+S  + E E  T VQ QGSGGVW
Sbjct: 482 VEMLRRQRSVSD-EGEDGT-VQRQGSGGVW 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576361|ref|XP_003556301.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/455 (63%), Positives = 367/455 (80%), Gaps = 8/455 (1%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 76
           V VFDLRSL WS+L+L+  +  D  +D    E+LP  S H M++WG KLL+LGG+ ++SS
Sbjct: 55  VQVFDLRSLTWSSLKLKANVRKD--DDDSSQEILPATSGHNMIRWGEKLLLLGGNSRESS 112

Query: 77  DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 136
             + VR+ID+ET   GV++TSG VPVAR G S +L GSR+I+FGGE+ SRKLLNDVH LD
Sbjct: 113 AELTVRYIDIETCQFGVIKTSGDVPVARVGQSASLFGSRVILFGGEEMSRKLLNDVHVLD 172

Query: 137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 196
           LE+MTW+ ++ TQTPPAPRYDHSAA+   RYL++FGGCSHSIFFNDLH+LD+QT EWSQP
Sbjct: 173 LESMTWEMIKTTQTPPAPRYDHSAAIQGERYLLIFGGCSHSIFFNDLHLLDMQTMEWSQP 232

Query: 197 EIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLA 256
           + +GDLV+ RAGH GITIDE+W IVGGGDN +GC ET+VL+M+KL WS+LT VK ++PL+
Sbjct: 233 QTQGDLVSPRAGHTGITIDESWLIVGGGDNRSGCPETLVLDMSKLVWSVLTVVKQKDPLS 292

Query: 257 SEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVT 316
           SEGLSVCSA I GE +L+AFGGYNG+Y+NEVFVMR K +D  RPKIFQSPAAAAAAASVT
Sbjct: 293 SEGLSVCSATIGGEKYLLAFGGYNGRYSNEVFVMRPKAKDTMRPKIFQSPAAAAAAASVT 352

Query: 317 AAYALAKSEKLDIPK--TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 374
           +AYAL+KSEKLD  +   ++SK +  G+   + DV   ++AIKE+KR+LELS+ EVR EN
Sbjct: 353 SAYALSKSEKLDFMQLDDINSKLSVNGH--HKDDVVDKVEAIKEEKRLLELSIAEVRAEN 410

Query: 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQ 434
           S+   +I+E+N+TH+EL+KEL SVQGQLVAERSRCF LEA+IAELQK+LES Q++E EVQ
Sbjct: 411 SKLGGEIEEINNTHAELTKELQSVQGQLVAERSRCFNLEAKIAELQKLLESMQSVEEEVQ 470

Query: 435 ILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ 469
            LR++KSA +QEME A + +++ SG  WRW  G +
Sbjct: 471 ALREKKSALDQEMELAATAESKSSG--WRWFGGSE 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449833|ref|NP_001048563.1| Os02g0822800 [Oryza sativa Japonica Group] gi|48716304|dbj|BAD22917.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|55773890|dbj|BAD72475.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|113538094|dbj|BAF10477.1| Os02g0822800 [Oryza sativa Japonica Group] gi|222623936|gb|EEE58068.1| hypothetical protein OsJ_08927 [Oryza sativa Japonica Group]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/453 (52%), Positives = 323/453 (71%), Gaps = 5/453 (1%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS- 75
           + VFD R+L WS L    +      E++      P ++ H +V W   ++++ G+ + S 
Sbjct: 62  IQVFDFRTLKWSALSAARDSSQLNIENNTTDPSFPALAGHSLVNWKKYIVVVAGNTRTST 121

Query: 76  SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135
           S+ + V  I++ETN    ++T GKVP++RGG SV+LVGSRLI+FGGED  R+LLND+H L
Sbjct: 122 SNKVSVWLINVETNSWSSVDTYGKVPISRGGQSVSLVGSRLIMFGGEDNKRRLLNDLHIL 181

Query: 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 195
           DLETM W+ V+  +  PAPRYDHSAA++A++YL++FGG SHS  F+D+++LDLQT EWSQ
Sbjct: 182 DLETMMWEEVKTGKGGPAPRYDHSAAVYADQYLLIFGGSSHSTCFSDIYLLDLQTMEWSQ 241

Query: 196 PEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL 255
           P+ +G  +  R+GHAG  IDENWYIVGGGDN +G  +TI++N +K  WS++TSV  R+PL
Sbjct: 242 PDTQGAHINPRSGHAGTMIDENWYIVGGGDNASGSTDTIMMNASKFVWSVVTSVPARDPL 301

Query: 256 ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASV 315
           A EGL++CS  ++GE  LVAFGGYNG+YNNE+FVM+LKPR++ +P++ QSPAAAAAAASV
Sbjct: 302 ACEGLTLCSTTVDGEKFLVAFGGYNGQYNNEIFVMKLKPRNLVQPRLLQSPAAAAAAASV 361

Query: 316 TAAYALAKSEKL-DIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 374
           TAAYA+   EK  DI  T       +    S K + T++DA+  +K  LE  L EVR EN
Sbjct: 362 TAAYAVITDEKTRDIVATDDLDVKRVQPSGSSKQITTELDALNGEKGKLESRLAEVRDEN 421

Query: 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQ 434
           S+ ++++D V  +H EL+KEL SVQ QL AE SRC KLE+QIA   K LES+ ++ENE++
Sbjct: 422 SKLKDRLDMVKLSHGELTKELKSVQHQLAAEGSRCQKLESQIAAAHKRLESTDSLENELE 481

Query: 435 ILRQQKSAFEQEMERATSVQTQGSGGVWRWIAG 467
           +LRQQ S  EQ M   T+ Q Q SGGVW+W+AG
Sbjct: 482 VLRQQISQVEQTM---TTAQRQKSGGVWKWVAG 511

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137701|ref|XP_003570438.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Brachypodium distachyon]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/457 (51%), Positives = 321/457 (70%), Gaps = 11/457 (2%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 76
           V VFD R+  WS      + +    E++   +  P ++ H +VKW   L+++ G+ + SS
Sbjct: 64  VQVFDFRTFKWSVSSPSRDSNQLNLENNAGNQPFPALAGHSLVKWKNNLVVVAGNSRASS 123

Query: 77  DSMI-VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135
            + + V  ID+ETN    ++T GKVPVAR G SV+L+GS+LI+FGGED  R+LL+D+H L
Sbjct: 124 SNKVSVWLIDVETNSWSAVDTYGKVPVARSGQSVSLIGSQLIMFGGEDNKRRLLSDLHIL 183

Query: 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 195
           DLETM W+ ++  +  PAPRYDHSAA++A+ YL++FGG SHS  F+D+++LDLQT EWSQ
Sbjct: 184 DLETMIWEEIKTEKGGPAPRYDHSAAVYADHYLLIFGGSSHSTCFSDMYLLDLQTLEWSQ 243

Query: 196 PEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL 255
           P+ +G  +T R+GHAG  IDENWYIVGGGDN +G  +TIV+N +K  WS++TSV  R+ L
Sbjct: 244 PDTQGANITPRSGHAGTMIDENWYIVGGGDNASGSTDTIVMNASKFVWSVVTSVSIRDSL 303

Query: 256 ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASV 315
           A EGL++CS  I+GE  L+AFGGYNGKYNNEVFVM+ KPR+  +P++ QSPAAAAAAASV
Sbjct: 304 ACEGLTLCSTTIDGEKFLIAFGGYNGKYNNEVFVMKPKPRNFVQPRLLQSPAAAAAAASV 363

Query: 316 TAAYALA-----KSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEV 370
           TAAYA+      K+  +     L  K A  G+  S K    +IDA+  +K  LE  L EV
Sbjct: 364 TAAYAVVTATDEKTRDIVAADDLDVKRAEPGS--SSKQTVAEIDALNWEKGKLESQLAEV 421

Query: 371 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE 430
           R ENS+ ++K+D V  ++SEL+KEL SV+ QL AE SRC KLE+QIA   K L+S+ ++E
Sbjct: 422 RAENSKLKDKLDTVKLSYSELTKELRSVENQLAAEGSRCQKLESQIAATNKRLQSADSLE 481

Query: 431 NEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAG 467
           NE+++L+QQ S  EQ M   T+ Q + SGGVW+W+AG
Sbjct: 482 NELEVLQQQISQVEQTM---TTAQRRKSGGVWKWVAG 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
TAIR|locus:2184352	514	AT5G04420 [Arabidopsis thalian	0.946	0.863	0.64	3e-156
TAIR|locus:2143676	648	ACBP5 "acyl-CoA binding protei	0.914	0.662	0.432	1.6e-93
TAIR|locus:2183008	708	AT5G18590 [Arabidopsis thalian	0.571	0.378	0.363	6.8e-50
DICTYBASE|DDB_G0280765	777	DDB_G0280765 "Kelch repeat-con	0.417	0.252	0.323	3.9e-23
DICTYBASE|DDB_G0268860	943	rngB "Kelch repeat-containing	0.366	0.182	0.383	5.6e-22
POMBASE|SPCC1223.06	1147	tea1 "cell end marker Tea1" [S	0.520	0.212	0.276	1.3e-19
DICTYBASE|DDB_G0270750	485	DDB_G0270750 "Kelch repeat-con	0.373	0.360	0.316	2.6e-18
DICTYBASE|DDB_G0272080	1523	gacHH "RhoGAP domain-containin	0.285	0.087	0.304	6.8e-11
UNIPROTKB|F1SKQ3	370	RABEPK "Uncharacterized protei	0.379	0.481	0.284	1e-16
DICTYBASE|DDB_G0268110	514	DDB_G0268110 "SAM domain-conta	0.302	0.276	0.349	2.7e-16

TAIR|locus:2184352 AT5G04420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1523 (541.2 bits), Expect = 3.0e-156, P = 3.0e-156
 Identities = 288/450 (64%), Positives = 354/450 (78%)

Query:    17 VMVFDLRSLAWSNLRLETELD-ADKT-EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHY 72
             V VFDLRSL WS+L+L+TE   AD   ED G  L E  P +SDH M+KWG KLL++GGH 
Sbjct:    62 VQVFDLRSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHS 121

Query:    73 KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV 132
             KKSSD+M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+
Sbjct:   122 KKSSDNMLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDL 181

Query:   133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192
             H L LETMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT E
Sbjct:   182 HVLHLETMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTME 241

Query:   193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR 252
             WSQP ++GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R
Sbjct:   242 WSQPHVQGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEAR 301

Query:   253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXX 312
             +PLASEGLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SP      
Sbjct:   302 HPLASEGLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAA 361

Query:   313 XXXXXXXXXXKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRT 372
                       KS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + 
Sbjct:   362 ASVTAAYAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQV 421

Query:   373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 432
             EN++ REKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE E
Sbjct:   422 ENAKLREKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAE 481

Query:   433 VQILRQQKSAFEQEMERATSVQTQGSGGVW 462
             V++LR+Q+SA ++E E  T VQ QGS GVW
Sbjct:   482 VEMLRRQRSASDEE-EDGT-VQRQGSAGVW 509

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2143676 ACBP5 "acyl-CoA binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 194/449 (43%), Positives = 281/449 (62%)

Query:    15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 74
             G + V DL++  WS  R+ET++     E S   + L   + H ++ W  +LL +GGH K 
Sbjct:   210 GDLHVLDLKNWTWS--RVETKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKD 266

Query:    75 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 134
              S+SM V   DL      +++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H 
Sbjct:   267 PSESMPVMVFDLHCCSWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHI 326

Query:   135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194
             LDL+TMTW+ ++   +PP PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS
Sbjct:   327 LDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWS 386

Query:   195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP 254
             +   +GD  T RAGHAG+TI ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   P
Sbjct:   387 RHTQQGDAPTPRAGHAGVTIGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVP 446

Query:   255 LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXXXX 314
             LASEGLS+  +   GE  +VAFGGYNG YNNEV V++   +   + KI  +         
Sbjct:   447 LASEGLSLVVSSYNGEDIVVAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSA 506

Query:   315 XXXXXXXXKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 374
                          DI   +  K  G  + +        I  +K +K  +E SL + + + 
Sbjct:   507 VNNATTR------DIESEI--KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQT 550

Query:   375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQ 434
              + +E++ E+++ ++EL KEL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E++
Sbjct:   551 LQLKEELAEIDTRNTELYKELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELE 610

Query:   435 ILRQQKS-AFEQEMERATSVQTQGSGGVW 462
             +L++Q++ A EQ        Q+ G    W
Sbjct:   611 LLQRQRAVASEQAATMNAKRQSSGGVWGW 639

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006869 "lipid transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009416 "response to light stimulus" evidence=TAS

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2183008 AT5G18590 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.8e-50, Sum P(2) = 6.8e-50
 Identities = 101/278 (36%), Positives = 150/278 (53%)

Query:    12 LLEGV-VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG 70
             LL+ V V+ FD  S  WS    +  L       S L  ++P    HC+V WG K+L++GG
Sbjct:   102 LLDDVQVLNFD--SCTWSTASSKVYLSP-----SSLPLMIPAWKGHCLVSWGKKVLLVGG 154

Query:    71 HYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLN 130
                 SSD + V   D ++    +M+  G +PV+R GH+V    S LI+FGGED  ++ LN
Sbjct:   155 KTDPSSDRVSVWAFDTDSECWSLMDAKGDLPVSRSGHTVVRASSVLILFGGEDSKKRKLN 214

Query:   131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT 190
             D+H  DL++ TW  +  T T P  R  H A L  ++ L VFGG   +   NDL+ LD +T
Sbjct:   215 DLHMFDLKSSTWLPLNCTGTRPCARSHHVATLFDDKILFVFGGSGKNKTLNDLYSLDFET 274

Query:   191 NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK 250
               WS+ +I+G   + RAG  G+     WYI GGG       ET+V ++ K+ WS+  S+ 
Sbjct:   275 MVWSRIKIRGFHPSPRAGSCGVLCGTKWYITGGGSRKKRHAETLVFDILKVEWSV-ASIS 333

Query:   251 GRNPLAS-EGLSVCSAIIEGEHHLVAFGGYNGKYNNEV 287
              ++ + S +G S+     + +  LVAFGG     +N+V
Sbjct:   334 SQSSVTSNKGFSLVLLQHKDKDFLVAFGGTKKDPSNQV 371

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

DICTYBASE|DDB_G0280765 DDB_G0280765 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 273 (101.2 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
 Identities = 69/213 (32%), Positives = 106/213 (49%)

Query:    21 DLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG-HYKKSSDSM 79
             +LR+++WS    E     D         V PP++    +    ++++ GG H  K  +S 
Sbjct:   121 NLRTMSWSTFHFEKSTLPDSRAGHTSTYV-PPIN----INGSLRMVVFGGSHSDKYLNSC 175

Query:    80 IVRFIDLETNLCGVM-----ETSGKVPVARGGHSVTLVGSR--LIIFGGEDRSRKLLNDV 132
              +  +DL  +  G +     +  GK P  R GH+   +  R  ++IFGG D  RK  ND+
Sbjct:   176 FI--LDLPKSQAGTIKWIKPQIKGKAPSQRSGHTADYLKDRNSILIFGGFD-GRKSFNDL 232

Query:   133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192
             H L++  M+W AV+   T P  R  H++ L   RYL+ +GGCS S   ND+ +LD  +  
Sbjct:   233 HLLNMTDMSWTAVKTNGTTPTTRNGHTSVLVGGRYLVFYGGCSESNVSNDIQILDTDSFT 292

Query:   193 W-SQPEIKGDLVTGRAGHAGITIDENWYIVGGG 224
             W SQP I G ++  R  H+   +D    IV GG
Sbjct:   293 WLSQPMITGLILFPRFNHSSNLLDSGEMIVFGG 325

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 278 (102.9 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
 Identities = 69/180 (38%), Positives = 91/180 (50%)

Query:    56 HCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS 114
             H  V +   L++ GGH   KS     V    LE+N        G +P AR  HS   V +
Sbjct:   131 HTAVVYRQNLVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCGGVIPSARATHSTFQVNN 190

Query:   115 -RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173
              ++ IFGG D  +K  ND+++LDLET  W  VE   TPP PR  HSA +  N  L++FGG
Sbjct:   191 NKMFIFGGYD-GKKYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGG 249

Query:   174 C-SHSIFFNDLHVLDLQ-TNE--WSQPEIKG-DLVTGRAGHAGITIDENWYIVGGGDNNN 228
             C S S F ND+H+L ++  NE  W QP   G ++   R  H    I    YI  G  + N
Sbjct:   250 CGSDSNFLNDIHILHIEGANEYRWEQPSYLGLEIPQARFRHTTNFIGGRVYIYAGTGSGN 309

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 245 (91.3 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 73/264 (27%), Positives = 117/264 (44%)

Query:    45 GLLEVLPPMS--DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV 102
             G   VLP  S   H   + G ++ I GG    S     +  ++L T+    + + G+ P 
Sbjct:    73 GSSNVLPRYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPS 132

Query:   103 ARGGHSVTLVGSRLIIFGG---EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159
              R GH+  L+G+  I+FGG    D + +  N ++ L+  ++ W     +   P+ RY H+
Sbjct:   133 PRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHT 192

Query:   160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQT-----NEWSQPEIKGDLVTGRAGHAGITI 214
              +   ++ + +FGG     +FNDL   DL       + W    +  D    RAGH   T 
Sbjct:   193 ISCLGSK-ICLFGGRLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTF 251

Query:   215 DENWYIVGGGDNNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHL 273
              +  YI GG D  N   +    +  + AWS + T     NP A    SV    +EG   L
Sbjct:   252 SDKLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASV----VEGI--L 305

Query:   274 VAFGGY--NGKYNNEVFVMRLKPR 295
               FGG   +G + N+++  RL  +
Sbjct:   306 YVFGGRASDGTFLNDLYAFRLSSK 329

GO:0005515 "protein binding" evidence=IPI

GO:0005874 "microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IC

GO:0010570 "regulation of filamentous growth" evidence=IMP

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0031500 "Tea1 cell-end complex" evidence=IDA

GO:0032153 "cell division site" evidence=IDA

GO:0034613 "cellular protein localization" evidence=IMP

GO:0035838 "growing cell tip" evidence=IDA

GO:0035839 "non-growing cell tip" evidence=IDA

GO:0051285 "cell cortex of cell tip" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IGI

GO:0071963 "establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

GO:2000771 "positive regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

DICTYBASE|DDB_G0270750 DDB_G0270750 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 247 (92.0 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 57/180 (31%), Positives = 87/180 (48%)

Query:    64 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 123
             K+ I GG+  K  + + V  +DLET         G+ P AR  HSV  VG  +I+FGG  
Sbjct:   181 KMYIFGGYRSKCLNDLHV--LDLETFTWSEPICIGEAPSARSSHSVCCVGKMMILFGGS- 237

Query:   124 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL 183
                +  N++  LD  TM W   +V  TPP+ R+ H+      + ++ FGG +     N +
Sbjct:   238 -GARYSNELFSLDTVTMRWTKHDVLGTPPSERWCHTMCSFGKK-VVTFGGSNDKRKDNKV 295

Query:   184 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 243
             ++LD  T EWSQP   G+    R  H  + I E+  + GG   +    +  +LN   + W
Sbjct:   296 YILDTDTMEWSQPPTSGNCPIPRQLHTAVAIGESMIVFGGWGKHQELNDLYILNTRTMKW 355

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0272080 gacHH "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 189 (71.6 bits), Expect = 6.8e-11, Sum P(3) = 6.8e-11
 Identities = 43/141 (30%), Positives = 72/141 (51%)

Query:    62 GTK-LLILGGH---YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLI 117
             G K ++I GG     +K +++  +     +TN       SG +P    GHS T VG ++ 
Sbjct:    27 GEKDIVIFGGFDFCIEKPTNTTYILHTS-QTNGLTKPSVSGSLPPPIYGHSSTQVGRKMF 85

Query:   118 IFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG--CS 175
             +FGG  +    +ND++  +    +W        PP PRY HSA+L  + Y+++FGG    
Sbjct:    86 VFGGSLQDNVQVNDMYQFNTSNYSWSKPRPMGEPPIPRYGHSASLIYDNYILIFGGNNTK 145

Query:   176 HSIFFNDLHVLDLQTNEWSQP 196
              S   ND+H+ + + N W++P
Sbjct:   146 SSKPLNDIHIFNTERNSWTKP 166

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|F1SKQ3 RABEPK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 52/183 (28%), Positives = 91/183 (49%)

Query:    67 ILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRS 125
             + GG   +S +   ++ ++ ET    + E +   P  R  H S +++G++L +FGG +R 
Sbjct:   103 VFGGA-DQSGNRNCLQVLNPETRTWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERG 161

Query:   126 RKLLNDV--HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL 183
              + + DV  H  D  T+TW   E    PP+PR+ H   + A   L + GG +   F++DL
Sbjct:   162 AQPVQDVKLHVFDANTLTWSQPETLGEPPSPRHGH-VMVAAGTKLFIHGGLAGDKFYDDL 220

Query:   184 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 243
             H +D+   +W +    G   TG A H+ +T+ ++ YI GG             ++ K  W
Sbjct:   221 HCIDINDMKWQKLSPTGAAPTGCAAHSAVTVGKHVYIFGGMTPTGALDTMYQYHIEKQHW 280

Query:   244 SIL 246
             ++L
Sbjct:   281 TLL 283

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

DICTYBASE|DDB_G0268110 DDB_G0268110 "SAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 230 (86.0 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 50/143 (34%), Positives = 75/143 (52%)

Query:   101 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 160
             P +R  H    +   L +FGG +   ++LND+  L++ET  W+ V+V      PR  HS 
Sbjct:    11 PNSRCAHQSETIDGELYVFGGWNDDNEMLNDLFKLNIETWEWEEVKVENNFITPRNGHSL 70

Query:   161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI 220
               + N  LIVFGG S S F ND+ + D +T EW+     GD+ +GR+ H+   + +  YI
Sbjct:    71 NSY-NGKLIVFGGGSFSGFLNDIFIFDPKTVEWNCINTTGDIPSGRSKHSSTLLGDKLYI 129

Query:   221 VGGGDNNNGCQETIVLNMTKLAW 243
              GGGD      +   L++ K  W
Sbjct:   130 FGGGDGIRLYNDMYCLDLLKYEW 152

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.2901.1 hypothetical protein (504 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	469
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	9e-11
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	3e-10
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	2e-09
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	7e-09
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	1e-08
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	3e-07
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	4e-07
pfam13964	50	pfam13964, Kelch_6, Kelch motif	1e-06
pfam13854	42	pfam13854, Kelch_5, Kelch motif	5e-06
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	6e-06
pfam01344	46	pfam01344, Kelch_1, Kelch motif	9e-06
pfam07646	48	pfam07646, Kelch_2, Kelch motif	1e-05
pfam13854	42	pfam13854, Kelch_5, Kelch motif	2e-05
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
pfam14073	178	pfam14073, Cep57_CLD, Centrosome localisation doma	2e-04
pfam07646	48	pfam07646, Kelch_2, Kelch motif	3e-04
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
COG3055	381	COG3055, COG3055, Uncharacterized protein conserve	4e-04
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	5e-04
pfam13964	50	pfam13964, Kelch_6, Kelch motif	5e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	5e-04
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.001
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.001
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
smart00612	47	smart00612, Kelch, Kelch domain	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 63.4 bits (154), Expect = 9e-11
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 15/182 (8%)

Query: 56  HCMVKWGTKLLILGGHYKKSS--DSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLV 112
           H + + G K+   GG +  +   D  +  F DLET    +   +G VP ++  G  +  +
Sbjct: 169 HGIAQVGNKIYSFGGEFTPNQPIDKHLYVF-DLETRTWSISPATGDVPHLSCLGVRMVSI 227

Query: 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS-AALHANRYLIVF 171
           GS L +FGG D SR+  N  +  D  T  W  +   +  P PR  HS AA   N Y  VF
Sbjct: 228 GSTLYVFGGRDASRQY-NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY--VF 284

Query: 172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN--WYIVGGGDNNNG 229
           GG S +     L   ++   +W      GD  + R G AG+ + +   W + G     NG
Sbjct: 285 GGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVVQGKVWVVYG----FNG 339

Query: 230 CQ 231
           C+
Sbjct: 340 CE 341

Length = 470

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 103 ARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 154
            R  H+ T +G  RL +FGGE+    +L+DV   DL T TW     T+ P  P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTW-----TRLPSLP 48

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 163
           G ++ +FGG       LND+   DL+T TW   E     P PR  H+A + 
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 154 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQ 195
           PR  H++    +  L +FGG +      +D+ V DL TN W++
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTR 43

Length = 49

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 93  VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLN-DVHFLDLETMTWDAVEVTQTP 151
           V +  GK P  R  H + +VG +L  FGGE +  + ++ D++  D  T TW         
Sbjct: 12  VEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV 71

Query: 152 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG---RAG 208
           P         +     L +FGG      F+D +  D   NEW+    K D   G   R  
Sbjct: 72  PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTF-LTKLDEEGGPEARTF 130

Query: 209 HAGITIDENWYIVGGGDNNNGCQET 233
           H+ +  DEN   V GG +  G  +T
Sbjct: 131 HS-MASDENHVYVFGGVSKGGLMKT 154

Length = 341

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 94  METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLND-VHFLDLETMTWDAVEVTQTPP 152
           +E  G+ P  R  H +  VG+++  FGGE    + ++  ++  DLET TW     T   P
Sbjct: 156 VEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP 215

Query: 153 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHA 210
                    +     L VFGG   S  +N  +  D  TNEW    P  +G   T R+ H+
Sbjct: 216 HLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP--TPRSFHS 273

Query: 211 GITIDENWYIVGG 223
               +EN Y+ GG
Sbjct: 274 MAADEENVYVFGG 286

Length = 470

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 165 NRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 214
              + VFGG        NDL V DL TN W +    GDL   RAGHA   I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 106 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 155
           GHS   VG ++ +FGG     K  N V   D ET +W+ +      P PR
Sbjct: 4   GHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLP---PLPTPR 50

Length = 50

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 151 PPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTN 191
            P PR +H A +     + ++GG +       +D++VL L   
Sbjct: 1   LPVPRANHCAVVVGG-EIYLYGGYTSGNGQSSDDVYVLSLPGF 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 21/104 (20%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426
           L E++ E +  +E++ E+    +EL +E   ++ +L    +   +L+ ++A ++++  ++
Sbjct: 68  LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127

Query: 427 QTIENEVQILRQQKSAFEQEMERATSVQTQGSGGV-WRW-IAGG 468
             ++ E + LR++ +  +QE E   +   +       RW + GG
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQRRWFLYGG 171

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 154 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 195
           PR      +     + V GG       + + V D +TN WS+
Sbjct: 1   PRSGAGVVVL-GGKIYVIGGYDGGQSLSSVEVYDPETNTWSK 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 104 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTP 151
           R  H+  +VG +L + GG         +D+  LD ET  W   E+   P
Sbjct: 2   RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWT--ELPALP 48

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 100 VPVARGGHSVTLVGSRLIIFGGED-RSRKLLNDVHFLDLET 139
           +PV R  H   +VG  + ++GG    + +  +DV+ L L  
Sbjct: 1   LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 52/234 (22%), Positives = 77/234 (32%), Gaps = 57/234 (24%)

Query: 102 VARGGHSVTLVGSRLIIFGG-----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156
             R       +  +L +FGG      + S ++ +DV+  D +  +W  ++     P    
Sbjct: 52  GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLL 109

Query: 157 DHSAALHANRYLIVFGGCSHSIF---FNDL-----------------------------H 184
             S     N      GG + +IF   F DL                             +
Sbjct: 110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169

Query: 185 VL--DLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ--ETIVLNMT- 239
           VL  D  TN+W        L  G AG + I    N  ++  G+   G +  E      T 
Sbjct: 170 VLSYDPSTNQWRNLGENPFL--GTAG-SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226

Query: 240 -KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY---------NGKY 283
            KL W+ L  +      + EGL+   A I     LVA G           NGK 
Sbjct: 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKL 280

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 20/102 (19%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 406
           +++  ++++++E    L+  + E+  +    +E+++E+     E  + L +++ +L +  
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 407 SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 448
            R  +LE +I EL+   E  + +E ++  L ++    E+E+E
Sbjct: 821 QRRERLEQEIEELE---EEIEELEEKLDELEEELEELEKELE 859

Length = 1163

>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 344 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 403
           L EK  R +++  + +  +  LS  E         E+  E N   +EL+K+   +  QL 
Sbjct: 9   LQEKIRRLELERTQAEDNLQTLS-REATHYKKVLEEEEQERNLAANELTKQNKDLTSQLS 67

Query: 404 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 457
           +  SRC  LE Q+  +++M+E+++       +L QQ S   ++      VQ Q 
Sbjct: 68  SAESRCSLLEKQLEYMRRMVENAEK--ERTAVLEQQVSLQREKEHDQMDVQAQL 119

The CLD or centrosome localisation domain of Cep57 is found at the N-terminus, and lies approximately between residues 58 and 239. This region lies within the first alpha-helical coiled-coil segment of Cep57, and localises to the centrosome internally to gamma-tubulin, suggesting that it is either on both centrioles or on a centromatrix component. This N-terminal region can also multimerise with the N-terminus of other Cep57 molecules. The C-terminal part, Family Cep57_MT_bd, pfam06657, is the microtubule-binding region of Cep57. Length = 178

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 154 PRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS 194
           PRY H++ +   + L V GG +    +  +DL VLD +TN W+
Sbjct: 1   PRYPHASVVVGGK-LYVVGGSTGLGDLSSSDLWVLDPETNVWT 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 22/139 (15%)

Query: 116 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS 175
           + + GG  ++ +LL  V    L T  W         P   Y   A  H    + V GG S
Sbjct: 392 IYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDG-KIYVIGGIS 447

Query: 176 HS---IFFNDLHVLDLQTNEWS------QPEIKGDLVTGRAGHAGITIDENWYIVGGGDN 226
           +      +N +   +  TN+W+       P I   L            +   Y+VGG   
Sbjct: 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI---------FNNKIYVVGGDKY 498

Query: 227 NNGCQETIVLNMTKLAWSI 245
                E  V +     W++
Sbjct: 499 EYYINEIEVYDDKTNTWTL 517

Length = 534

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 345 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 404
             K+   +++ +  + + LE  L E+R E S   E+I+E+      L+ E+S ++ Q   
Sbjct: 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306

Query: 405 ERSR-------CFKLEAQIAELQKML----ESSQTIENEVQILRQQKSAFEQEMERATSV 453
            R R         +LEAQ+ EL+  L    E    +E +++ L+++  + E E+E   + 
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 454 Q 454
            
Sbjct: 367 L 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 20/106 (18%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 345 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 404
           +   ++ +I+ ++E ++ L+  L E+  E      ++D +      L +    ++ ++  
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832

Query: 405 ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 450
                 +LE ++ EL++ LE    +E E++ L+++    E E E  
Sbjct: 833 LEEEIEELEEKLDELEEELEE---LEKELEELKEELEELEAEKEEL 875

Length = 1163

>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 52/233 (22%), Positives = 74/233 (31%), Gaps = 70/233 (30%)

Query: 103 ARGGHSVTLVGSRLIIFGG----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR--Y 156
           AR      ++G +L +FGG       S ++ ND +  D  T +W  ++      +P    
Sbjct: 82  ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR----SPTGLV 137

Query: 157 DHSAALHANRYLIVFGGCSHSIF---FNDL---------------HVLDL---------- 188
             S        +  FGG + +IF   F D+               H  D           
Sbjct: 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE 197

Query: 189 ------QTNEWSQPEIKGDL-VTGRAGHAGITIDEN--WYIVG---GGDNNNGCQETIVL 236
                  TN+W      G+    G AG A + I  N    I G    G      ++    
Sbjct: 198 VLSYDPSTNQWR---NLGENPFYGNAGSA-VVIKGNKLTLINGEIKPGLRTAEVKQADFG 253

Query: 237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 289
               L W                LS   A I      VA G ++GK N EV V
Sbjct: 254 GD-NLKWLK--------------LSDLPAPIGSNKEGVA-GAFSGKSNGEVLV 290

Length = 381

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 66  LILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGE--- 122
           ++ GG  K   +S  V+F D  +     +ET+G  P AR   +  +VG  +IIFGGE   
Sbjct: 206 ILPGG--KSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWP 263

Query: 123 DRSR-----KLLNDVHFLDLETMTWDAVEVTQTPPAPR----YDHSAALHANRYLIVFGG 173
           D         L N+ + LD ET+ W+ +     P  PR    Y  +A ++    L++ GG
Sbjct: 264 DLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYT-TATVYGKNGLLMHGG 322

Length = 341

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 154 PRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQ 195
           PR  HSA       + VFGG  + S   N + V D +T  W +
Sbjct: 1   PRTGHSAVSVGG-KIYVFGGYSNGSKASNKVLVYDPETGSWEK 42

Length = 50

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 142
            R G  V ++G ++ + GG D  +  L+ V   D ET TW
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYDGGQ-SLSSVEVYDPETNTW 39

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 130 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC------SHSIFFNDL 183
              + LDL+  +    ++   P  PR    AA      L VFGG            F+D+
Sbjct: 29  TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG-KLYVFGGIGKANSEGSPQVFDDV 87

Query: 184 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 228
           +  D + N W +  +      G  G +G ++        GG N N
Sbjct: 88  YRYDPKKNSWQK--LDTRSPVGLLGASGFSLHNGQAYFTGGVNKN 130

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 346 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 405
            +++R +++ ++E+   L+  + E+  E S  RE+++E+ +   EL + L  ++ ++ A 
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335

Query: 406 RSRCFKLEAQIAEL-QKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 456
           +    + E  + EL Q + E  +  E   + L       E+  E       +
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Length = 1163

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------IFFNDLHVLDL 188
           LDL   +    ++   P  PR + + A   +  L VFGG   +        F+D++  D 
Sbjct: 55  LDLNAPSKGWTKIAAFPGGPR-EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113

Query: 189 QTNEWSQPEIKGDLVT----GRAGHAGITIDENW-YIVGG 223
           +TN W +      L T    G AGH  +++     YI GG
Sbjct: 114 KTNSWQK------LDTRSPVGLAGHVAVSLHNGKAYITGG 147

Length = 376

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 329 IPKTLS---SKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 385
           I K L    ++   +   L   ++   ++ ++     LE  + E+R    R  EK+  V 
Sbjct: 29  IRKALKKAKAELEALNKALEALEIE--LEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86

Query: 386 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT--------IENEVQILR 437
                  +EL ++  ++   + R   LE ++AEL + +E  +         +E   + L 
Sbjct: 87  D-----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141

Query: 438 QQKSAFEQEME 448
           + ++  E+E+ 
Sbjct: 142 EAEARLEEEVA 152

Length = 239

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 102 VARGGHSVTLVGSRLIIFGG-----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156
             R       +  +L +FGG      + S ++ +DV+  D +T +W   ++    P    
Sbjct: 73  GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW--QKLDTRSPVGLA 130

Query: 157 DHSAALHANRYLIVFGGCSHSIF---FNDLH 184
            H A    N    + GG + +IF   F DL 
Sbjct: 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161

Length = 376

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 24/150 (16%)

Query: 326 KLDIPKTLSSKFAGIGNDLSEKDVRTD--IDAIKEDKRVLELSLTEV----------RTE 373
           + +I K L+     +  ++ E+  R D   +   E K  LE    E+          R E
Sbjct: 328 EAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL-------EAQIAELQKMLESS 426
              +REK++++    +EL +EL  +Q +L         L       EA+I EL++  E  
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 427 Q----TIENEVQILRQQKSAFEQEMERATS 452
                  E +++ L    S +EQE+     
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 19/118 (16%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 339 GIGNDLSEKD----VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 394
           GI    SE      +R  ++ +K +   L+  L  +        +++ + +    E+ KE
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724

Query: 395 LSSVQGQLVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSAFEQEME 448
           +  ++ +    + R  +LE  ++ L++ +E      + +E  ++ L +     E+ + 
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 168 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 216
           + V GG         + V D +TN+W+       + T R+GH    I+ 
Sbjct: 2   IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVING 47

Length = 47

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 25/97 (25%), Positives = 49/97 (50%)

Query: 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 409
            ++++A+  ++  LE +L  +R+E     E++ E+ S  SEL +EL  ++ +L     R 
Sbjct: 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

Query: 410 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 446
             LE +I  LQ+ L    ++  E     + K   ++E
Sbjct: 932 EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 20/147 (13%)

Query: 318 AYALAKSEKLDIPKTLSSK---FAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 374
           A   AK+E   + K L +       +  +     + ++I  I+E  +  E  L+ V+ E 
Sbjct: 32  ALKKAKAELEALNKALEALEIELEDL--ENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89

Query: 375 SR---------FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 425
                       +E+I+ +    +EL +E+  ++ ++   + R  +LE  +AE +     
Sbjct: 90  ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE----- 144

Query: 426 SQTIENEVQILRQQKSAFEQEMERATS 452
              +E EV  +R++      + E    
Sbjct: 145 -ARLEEEVAEIREEGQELSSKREELKE 170

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 333 LSSKFAGIGNDLSE-KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 391
           LSS    I N  SE K++   I+ ++ED   LE +L ++  E      +I E+ +  S+L
Sbjct: 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSKL 803

Query: 392 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 448
            +E+S ++ +L        KL     E + + +  Q ++ +   L++Q  + E+E+E
Sbjct: 804 EEEVSRIEARLREIEQ---KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	469
PLN02193	470	nitrile-specifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PLN02193	470	nitrile-specifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	100.0
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.82
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.75
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.66
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.65
PF13964	50	Kelch_6: Kelch motif	99.25
PLN02772	398	guanylate kinase	99.23
PF13964	50	Kelch_6: Kelch motif	99.18
PLN02772	398	guanylate kinase	99.08
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.03
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.03
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.0
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.99
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.94
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.92
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.92
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.91
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.9
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.84
PF13854	42	Kelch_5: Kelch motif	98.79
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.71
PF13854	42	Kelch_5: Kelch motif	98.68
smart00612	47	Kelch Kelch domain.	98.53
smart00612	47	Kelch Kelch domain.	98.51
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.47
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.26
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.22
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.43
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.34
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.34
PF12768	281	Rax2: Cortical protein marker for cell polarity	97.28
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.28
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.0
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.99
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.9
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.72
KOG2055	514	consensus WD40 repeat protein [General function pr	96.71
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.68
KOG2055	514	consensus WD40 repeat protein [General function pr	96.66
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	96.52
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.46
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.44
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.38
KOG0646	476	consensus WD40 repeat protein [General function pr	96.33
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.27
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.23
PRK04922	433	tolB translocation protein TolB; Provisional	96.16
PRK00178	430	tolB translocation protein TolB; Provisional	96.11
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.11
PRK04792	448	tolB translocation protein TolB; Provisional	96.1
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	96.03
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.0
PRK04792	448	tolB translocation protein TolB; Provisional	95.89
PRK04043	419	tolB translocation protein TolB; Provisional	95.86
PRK05137	435	tolB translocation protein TolB; Provisional	95.85
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.81
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.8
COG2433	652	Uncharacterized conserved protein [Function unknow	95.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.7
PRK10361	475	DNA recombination protein RmuC; Provisional	95.64
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.63
PRK04922	433	tolB translocation protein TolB; Provisional	95.58
PRK00178	430	tolB translocation protein TolB; Provisional	95.52
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.48
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.48
PRK05137	435	tolB translocation protein TolB; Provisional	95.46
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.43
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.42
PRK03629	429	tolB translocation protein TolB; Provisional	95.36
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.32
PTZ00420	568	coronin; Provisional	95.29
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	95.27
PRK11028	330	6-phosphogluconolactonase; Provisional	95.26
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.22
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.22
PRK09039	343	hypothetical protein; Validated	95.16
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.15
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.11
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.1
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.01
COG4372	499	Uncharacterized protein conserved in bacteria with	94.98
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	94.97
PRK04043	419	tolB translocation protein TolB; Provisional	94.96
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.86
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.83
COG2433	652	Uncharacterized conserved protein [Function unknow	94.82
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.81
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	94.79
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.74
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	94.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.65
PRK09039	343	hypothetical protein; Validated	94.61
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.55
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.52
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.39
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.39
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.34
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	94.3
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.27
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	94.27
PRK03629	429	tolB translocation protein TolB; Provisional	94.2
KOG2321	703	consensus WD40 repeat protein [General function pr	94.19
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	94.14
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	94.11
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	94.1
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.1
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	94.09
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.02
PRK02889	427	tolB translocation protein TolB; Provisional	93.85
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	93.84
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.69
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.68
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.66
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.59
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.58
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.57
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.56
smart00284	255	OLF Olfactomedin-like domains.	93.36
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.35
PTZ00421	493	coronin; Provisional	93.33
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.3
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	93.29
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.28
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.23
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.22
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.21
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.17
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.12
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.11
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.05
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.02
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.98
KOG0646	476	consensus WD40 repeat protein [General function pr	92.94
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.92
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.9
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	92.8
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.69
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.62
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	92.6
COG3064	387	TolA Membrane protein involved in colicin uptake [	92.42
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	92.37
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.34
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.33
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.26
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	92.18
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.12
KOG0996	1293	consensus Structural maintenance of chromosome pro	92.08
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	92.01
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	92.0
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	91.99
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.97
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	91.86
PTZ00421	493	coronin; Provisional	91.71
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	91.71
KOG0649	325	consensus WD40 repeat protein [General function pr	91.71
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	91.7
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.64
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.57
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.56
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.54
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	91.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	91.53
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.49
PHA02562	562	46 endonuclease subunit; Provisional	91.46
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.42
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	91.4
COG4880	603	Secreted protein containing C-terminal beta-propel	91.39
PLN00181	793	protein SPA1-RELATED; Provisional	91.23
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.22
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.2
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.16
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.14
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	91.07
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.06
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	91.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.99
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	90.96
KOG0971	1243	consensus Microtubule-associated protein dynactin	90.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.84
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	90.83
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	90.81
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	90.73
PF15233	134	SYCE1: Synaptonemal complex central element protei	90.69
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	90.66
PLN00181	793	protein SPA1-RELATED; Provisional	90.58
KOG0249	916	consensus LAR-interacting protein and related prot	90.45
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	90.44
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	90.43
PRK04863	1486	mukB cell division protein MukB; Provisional	90.35
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.33
PTZ00420	568	coronin; Provisional	90.31
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.3
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	90.16
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	90.06
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	90.04
KOG1962	216	consensus B-cell receptor-associated protein and r	90.01
PRK13684	334	Ycf48-like protein; Provisional	90.01
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.0
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	89.98
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	89.96
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.95
PF15556	252	Zwint: ZW10 interactor	89.86
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.86
COG3206	458	GumC Uncharacterized protein involved in exopolysa	89.82
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	89.76
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	89.62
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	89.56
KOG2991	330	consensus Splicing regulator [RNA processing and m	89.53
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	89.5
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	89.49
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	89.39
KOG1003	205	consensus Actin filament-coating protein tropomyos	89.26
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	89.23
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	89.12
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	89.07
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	89.07
KOG0266	456	consensus WD40 repeat-containing protein [General	89.01
PRK02889	427	tolB translocation protein TolB; Provisional	88.99
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	88.98
PF14282	106	FlxA: FlxA-like protein	88.89
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.83
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	88.82
KOG0971	1243	consensus Microtubule-associated protein dynactin	88.65
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	88.6
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	88.56
PRK01742	429	tolB translocation protein TolB; Provisional	88.49
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	88.44
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.42
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	88.39
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.35
PRK10115	686	protease 2; Provisional	88.26
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	88.17
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	87.93
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	87.9
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	87.89
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.85
COG4946	668	Uncharacterized protein related to the periplasmic	87.68
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	87.61
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	87.43
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	87.28
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	87.19
KOG2048	691	consensus WD40 repeat protein [General function pr	87.17
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.09
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	86.93
PHA02562	562	46 endonuclease subunit; Provisional	86.91
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	86.83
KOG1937	521	consensus Uncharacterized conserved protein [Funct	86.68
PRK11028	330	6-phosphogluconolactonase; Provisional	86.58
KOG3915	641	consensus Transcription regulator dachshund, conta	86.56
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	86.53
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	86.41
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	86.32
KOG0933	1174	consensus Structural maintenance of chromosome pro	86.31
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.21
PRK13684	334	Ycf48-like protein; Provisional	86.2
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	86.2
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	86.17
PRK11546	143	zraP zinc resistance protein; Provisional	86.15
KOG3647	338	consensus Predicted coiled-coil protein [General f	85.98
PRK13182	175	racA polar chromosome segregation protein; Reviewe	85.97
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	85.95
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	85.85
PF13088	275	BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A	85.77
PRK11519	719	tyrosine kinase; Provisional	85.75
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	85.72
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	85.71
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	85.69
PRK03947	140	prefoldin subunit alpha; Reviewed	85.67
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	85.64
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	85.62
PRK10929	1109	putative mechanosensitive channel protein; Provisi	85.52
KOG0288	459	consensus WD40 repeat protein TipD [General functi	85.45
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	85.44
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	85.37
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	85.35
PRK10803	263	tol-pal system protein YbgF; Provisional	85.34
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	85.29
KOG2321	703	consensus WD40 repeat protein [General function pr	85.28
PRK15422	79	septal ring assembly protein ZapB; Provisional	85.24
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	85.24
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	85.01
PF07321	152	YscO: Type III secretion protein YscO; InterPro: I	84.92
PRK04406	75	hypothetical protein; Provisional	84.87
KOG0979	1072	consensus Structural maintenance of chromosome pro	84.71
PF11068	131	YlqD: YlqD protein; InterPro: IPR021297 This bacte	84.7
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	84.61
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	84.48
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	84.44
COG1322	448	Predicted nuclease of restriction endonuclease-lik	84.35
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.31
KOG0249	916	consensus LAR-interacting protein and related prot	84.15
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.12
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	83.92
PF15358	558	TSKS: Testis-specific serine kinase substrate	83.83
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	83.72
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	83.6
PRK10780	165	periplasmic chaperone; Provisional	83.48
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	83.46
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	83.38
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	83.37
PRK10698	222	phage shock protein PspA; Provisional	83.35
PRK06231	205	F0F1 ATP synthase subunit B; Validated	83.34
PF02388	406	FemAB: FemAB family; InterPro: IPR003447 The femAB	83.34
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	83.29
KOG3990	305	consensus Uncharacterized conserved protein [Funct	83.28
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	83.23
KOG1103	561	consensus Predicted coiled-coil protein [Function	83.14
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	83.05
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.93
KOG1937	521	consensus Uncharacterized conserved protein [Funct	82.89
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	82.87
KOG0649	325	consensus WD40 repeat protein [General function pr	82.86
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	82.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	82.75
PRK01742	429	tolB translocation protein TolB; Provisional	82.6
KOG0964	1200	consensus Structural maintenance of chromosome pro	82.46
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	82.22
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	82.12
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	81.87
KOG3215	222	consensus Uncharacterized conserved protein [Funct	81.87
KOG0964	1200	consensus Structural maintenance of chromosome pro	81.62
PF07851	330	TMPIT: TMPIT-like protein; InterPro: IPR012926 A n	81.25
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.03
PF06476	115	DUF1090: Protein of unknown function (DUF1090); In	81.03
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	80.95
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	80.94
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	80.88
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	80.86
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	80.82
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	80.72
KOG4673	961	consensus Transcription factor TMF, TATA element m	80.7
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	80.6
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	80.51
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	80.39
PF08657	259	DASH_Spc34: DASH complex subunit Spc34 ; InterPro:	80.38
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	80.36
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	80.26
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	80.18
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	80.03

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=3.4e-42  Score=345.96  Aligned_cols=304  Identities=20%  Similarity=0.304  Sum_probs=244.1

Q ss_pred             CEEEcccCCCcccCCceEEE--EccC----CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC
Q 012184            1 MLLRCSIRNYTLLEGVVMVF--DLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK   74 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~--d~~~----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~   74 (469)
                      |+.|+|.... .++ .+-+|  +|.+    ++|..+.+.+..             |.+|.+|+++++++.||++||....
T Consensus       123 ivgf~G~~~~-~~~-~ig~y~~~~~~~~~~~~W~~~~~~~~~-------------P~pR~~h~~~~~~~~iyv~GG~~~~  187 (470)
T PLN02193        123 IVGFHGRSTD-VLH-SLGAYISLPSTPKLLGKWIKVEQKGEG-------------PGLRCSHGIAQVGNKIYSFGGEFTP  187 (470)
T ss_pred             EEEEeccCCC-cEE-eeEEEEecCCChhhhceEEEcccCCCC-------------CCCccccEEEEECCEEEEECCcCCC
Confidence            3556675433 344 44444  6644    899999887544             8899999999999999999997543


Q ss_pred             C-CCcceEEEEECCCCeEEEeecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC
Q 012184           75 S-SDSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  152 (469)
Q Consensus        75 ~-~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p  152 (469)
                      . ...+++|+||+.+++|..+++.+++|. +|.+|++++++++||+|||..... .++++++||+.+++|+.+.+.+..|
T Consensus       188 ~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P  266 (470)
T PLN02193        188 NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGP  266 (470)
T ss_pred             CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCC
Confidence            3 244679999999999999887766665 467899999999999999987654 5899999999999999998766668


Q ss_pred             CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcce
Q 012184          153 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  232 (469)
Q Consensus       153 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d  232 (469)
                      .+|++|+++++ +++||||||.+....++++++||+.+++|+.+...+.+|.+|..|+++.+++++||+||.++. ..++
T Consensus       267 ~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~d  344 (470)
T PLN02193        267 TPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDD  344 (470)
T ss_pred             CCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCc
Confidence            99999999888 678999999987777899999999999999987666678899999999999999999997653 3689


Q ss_pred             EEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCccc
Q 012184          233 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKI  302 (469)
Q Consensus       233 ~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~~  302 (469)
                      +++||+.+++|+.++.+ +..|.+|.+|+++.+    +++||||||...          ...+++|+||+.++.|..+..
T Consensus       345 v~~yD~~t~~W~~~~~~-g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        345 VHYYDPVQDKWTQVETF-GVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             eEEEECCCCEEEEeccC-CCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence            99999999999998754 345678888887766    789999999752          245789999999999998775


Q ss_pred             c------CCCchhhcchhh-----hHHHhhcccccc
Q 012184          303 F------QSPAAAAAAASV-----TAAYALAKSEKL  327 (469)
Q Consensus       303 ~------~~~~~~~~~~~~-----~~~~~~gg~~~~  327 (469)
                      +      |.++.+++++..     ..+++|||....
T Consensus       420 ~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~  455 (470)
T PLN02193        420 FGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT  455 (470)
T ss_pred             CCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence            4      344444432221     348889988643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.6e-42  Score=349.52  Aligned_cols=266  Identities=22%  Similarity=0.301  Sum_probs=241.0

Q ss_pred             CEEEcccCC-CcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            1 MLLRCSIRN-YTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG~~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      ||++||..+ +..++ .+..|||.++.|..+.++                |.+|..+++++++|.||++||++......+
T Consensus       287 l~~vGG~~~~~~~~~-~ve~yd~~~~~w~~~a~m----------------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~  349 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLR-SVECYDPKTNEWSSLAPM----------------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLS  349 (571)
T ss_pred             EEEECCCCCCCcccc-eeEEecCCcCcEeecCCC----------------CcccccccEEEECCEEEEEccccCCCcccc
Confidence            589999886 67777 999999999999999999                789999999999999999999985444778


Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  159 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~  159 (469)
                      ++++||+.+++|..++   +|+.+|.+++++++++.||++||.++.. ..+++++||+.+++|..+.   +++.+|++|+
T Consensus       350 ~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va---~m~~~r~~~g  422 (571)
T KOG4441|consen  350 SVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVA---PMLTRRSGHG  422 (571)
T ss_pred             eEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccC---CCCcceeeeE
Confidence            8999999999999999   8999999999999999999999999654 6899999999999999986   7788999999


Q ss_pred             EEEEcCcEEEEEecCCCCc-ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184          160 AALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  238 (469)
Q Consensus       160 ~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~  238 (469)
                      ++++ +++||++||.+... +++++++|||.+++|+.++   +++.+|.+|+++.++++||++||+++......+..||+
T Consensus       423 v~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  423 VAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             EEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence            9999 77899999988776 8999999999999999975   89999999999999999999999988666778999999


Q ss_pred             CCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccc
Q 012184          239 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKI  302 (469)
Q Consensus       239 ~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~  302 (469)
                      .+++|+.+++++    .+|..+.+++.    ++.+|++||+++. ..+.+..||+.+++|.....
T Consensus       499 ~~~~W~~v~~m~----~~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  499 ETNQWTMVAPMT----SPRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             CCCceeEcccCc----cccccccEEEE----CCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            999999997664    44566777777    8899999999876 67889999999999998887

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=3.6e-41  Score=338.50  Aligned_cols=276  Identities=19%  Similarity=0.245  Sum_probs=228.9

Q ss_pred             CEEEcccCC-C-cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCC-CCcCeeeEEECCEEEEEccccCCCCC
Q 012184            1 MLLRCSIRN-Y-TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP-PMSDHCMVKWGTKLLILGGHYKKSSD   77 (469)
Q Consensus         1 l~~~GG~~~-~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~   77 (469)
                      |||+||... + ...+ ++++||+.+++|+.+++++..             |. +|.+|++++++++||+|||+.... .
T Consensus       178 iyv~GG~~~~~~~~~~-~v~~yD~~~~~W~~~~~~g~~-------------P~~~~~~~~~v~~~~~lYvfGG~~~~~-~  242 (470)
T PLN02193        178 IYSFGGEFTPNQPIDK-HLYVFDLETRTWSISPATGDV-------------PHLSCLGVRMVSIGSTLYVFGGRDASR-Q  242 (470)
T ss_pred             EEEECCcCCCCCCeeC-cEEEEECCCCEEEeCCCCCCC-------------CCCcccceEEEEECCEEEEECCCCCCC-C
Confidence            699999642 2 2345 899999999999988776422             43 578999999999999999987543 5


Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      ++++|+||+.+++|+.+++.+..|.+|.+|++++++++||+|||.+... ..+++++||+.+++|+.+++.+.+|.+|.+
T Consensus       243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~  321 (470)
T PLN02193        243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG  321 (470)
T ss_pred             CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence            7889999999999999986555589999999999999999999987644 578999999999999999877778889999


Q ss_pred             ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC---------C
Q 012184          158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN---------N  228 (469)
Q Consensus       158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~  228 (469)
                      |+++++ +++||++||.+.. ..+++++||+.+++|+.+...+..|.+|..|+++.++++||||||....         .
T Consensus       322 ~~~~~~-~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  399 (470)
T PLN02193        322 AGLEVV-QGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQ  399 (470)
T ss_pred             cEEEEE-CCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccc
Confidence            999988 6679999997643 4689999999999999988666779999999999999999999997431         2


Q ss_pred             CcceEEEEECCCCcEEEeccCCC--CCCCCCCCcceEEEEEcCCcEEEEEeccC--CCCCceEEEEECCC
Q 012184          229 GCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRLKP  294 (469)
Q Consensus       229 ~~~d~~~~d~~~~~W~~~~~~~~--~~p~~r~~~s~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~d~~~  294 (469)
                      ..+++|.||+.+.+|+.++.+..  ..|.+|..|+++...+.+++.||+|||.+  +...+|+|+|++++
T Consensus       400 ~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~  469 (470)
T PLN02193        400 LTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS  469 (470)
T ss_pred             eeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence            35789999999999999876543  45677777766555566566799999995  45789999998754

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.5e-40  Score=322.66  Aligned_cols=276  Identities=18%  Similarity=0.226  Sum_probs=218.6

Q ss_pred             CEEEcccCC--CcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCC-CCcCeeeEEECCEEEEEccccCCCCC
Q 012184            1 MLLRCSIRN--YTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP-PMSDHCMVKWGTKLLILGGHYKKSSD   77 (469)
Q Consensus         1 l~~~GG~~~--~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~   77 (469)
                      |||+||...  ....+ ++++||+.+++|+.+++++..             |. .+.+|++++++++||+|||..... .
T Consensus        35 iyv~GG~~~~~~~~~~-~~~~yd~~~~~W~~~~~~~~~-------------p~~~~~~~~~~~~~~~iyv~GG~~~~~-~   99 (341)
T PLN02153         35 LYSFGGELKPNEHIDK-DLYVFDFNTHTWSIAPANGDV-------------PRISCLGVRMVAVGTKLYIFGGRDEKR-E   99 (341)
T ss_pred             EEEECCccCCCCceeC-cEEEEECCCCEEEEcCccCCC-------------CCCccCceEEEEECCEEEEECCCCCCC-c
Confidence            699999743  23456 999999999999998887422             33 456899999999999999986544 4


Q ss_pred             cceEEEEECCCCeEEEeecC--CCCCCCCcceEEEEECCEEEEEeccCCCC-----CccCcEEEEECCCCeEEEeeeCCC
Q 012184           78 SMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVTQT  150 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyi~GG~~~~~-----~~~~~v~~~d~~t~~W~~~~~~g~  150 (469)
                      .+++++||+.+++|+.++..  ...|.+|.+|++++++++||||||.+...     ..++++++||+.+++|+.+++.+.
T Consensus       100 ~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~  179 (341)
T PLN02153        100 FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGE  179 (341)
T ss_pred             cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCC
Confidence            67899999999999998732  12388999999999999999999986432     235789999999999999987766


Q ss_pred             CCCCCCCceEEEEcCcEEEEEecCCC--------CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEe
Q 012184          151 PPAPRYDHSAALHANRYLIVFGGCSH--------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG  222 (469)
Q Consensus       151 ~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G  222 (469)
                      .|.+|.+|+++++ +++|||+||...        ....+++++||+.+++|+.+...+.+|.+|..|+++.++++|||||
T Consensus       180 ~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~G  258 (341)
T PLN02153        180 NFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFG  258 (341)
T ss_pred             CCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEEC
Confidence            6789999999888 667999998642        1236889999999999999987777899999999999999999999


Q ss_pred             cCCC---------CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC--CCceEEEEE
Q 012184          223 GGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMR  291 (469)
Q Consensus       223 G~~~---------~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~d  291 (469)
                      |...         ....+++|.||+.+..|+.+.... ..|.+|..+..+.+++.+++.|||+||.+..  ..+|+|.|+
T Consensus       259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~-~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~  337 (341)
T PLN02153        259 GEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG-EPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYA  337 (341)
T ss_pred             cccCCccccccccccccccEEEEEcCccEEEeccCCC-CCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEe
Confidence            9631         123579999999999999986432 2234444444444455556799999999653  678999997


Q ss_pred             CC
Q 012184          292 LK  293 (469)
Q Consensus       292 ~~  293 (469)
                      +.
T Consensus       338 ~~  339 (341)
T PLN02153        338 VN  339 (341)
T ss_pred             cc
Confidence            63

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=3.3e-41  Score=291.45  Aligned_cols=271  Identities=24%  Similarity=0.403  Sum_probs=233.1

Q ss_pred             CEEEcccCCCcccCC----ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCC
Q 012184            1 MLLRCSIRNYTLLEG----VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS   76 (469)
Q Consensus         1 l~~~GG~~~~~~~~~----~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~   76 (469)
                      ||-|||.-.+.....    ++.+|+..+-+|+.+++....   +.-...++..|.-|++|+++.+.+++|+|||.+....
T Consensus        26 iYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~k---a~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~eg  102 (392)
T KOG4693|consen   26 IYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITK---ATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEG  102 (392)
T ss_pred             EEecCCcccccccccCCcceeEEeeccceeEEecCccccc---ccccCCCCccchhhcCceEEEEcceEEEEcCccCccc
Confidence            588999755421110    589999999999999984322   1111224677888999999999999999999998877


Q ss_pred             CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCC-CCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184           77 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS-RKLLNDVHFLDLETMTWDAVEVTQTPPAPR  155 (469)
Q Consensus        77 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~-~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r  155 (469)
                      ..|.++.||+.++.|.+...+|-.|.+|.+|+++++++.+|||||+... .+++++++.+|++|.+|+.+.+.|.+|.=|
T Consensus       103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR  182 (392)
T KOG4693|consen  103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR  182 (392)
T ss_pred             ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence            8999999999999999999999999999999999999999999999653 458999999999999999999999999999


Q ss_pred             CCceEEEEcCcEEEEEecCCCC---------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCC
Q 012184          156 YDHSAALHANRYLIVFGGCSHS---------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  226 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~---------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  226 (469)
                      ..|+++++ ++.+|||||.+..         .+++.|-.||+.|+.|......+-.|.+|..|++...++.+|+|||+++
T Consensus       183 DFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng  261 (392)
T KOG4693|consen  183 DFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNG  261 (392)
T ss_pred             hhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccch
Confidence            99999999 5789999997532         4578899999999999998777788999999999999999999999876


Q ss_pred             CC--CcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184          227 NN--GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  280 (469)
Q Consensus       227 ~~--~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~  280 (469)
                      .-  .++|+|.||+.+..|..+.. .+..|.+|..+++++.    ++++|+|||-.
T Consensus       262 ~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~----g~kv~LFGGTs  312 (392)
T KOG4693|consen  262 TLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVS----GGKVYLFGGTS  312 (392)
T ss_pred             hhhhhhcceeecccccchheeeec-cCCCCCcccceeEEEE----CCEEEEecCCC
Confidence            43  48999999999999999854 6778899999887777    88999999964

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=3e-41  Score=291.72  Aligned_cols=270  Identities=25%  Similarity=0.404  Sum_probs=232.0

Q ss_pred             CCCcCeeeEEECCEEEEEccccCCCC----CcceEEEEECCCCeEEEeec--C-----C---CCCCCCcceEEEEECCEE
Q 012184           51 PPMSDHCMVKWGTKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMET--S-----G---KVPVARGGHSVTLVGSRL  116 (469)
Q Consensus        51 ~~r~~~~~~~~~~~iy~~GG~~~~~~----~~~~~~~~d~~t~~W~~~~~--~-----g---~~p~~r~~~~~~~~~~~l  116 (469)
                      +.|..|+++.+|.+||-|||+|....    ..-+|.++|..+.+|+++++  +     +   ..|.-|.+|+++.+++++
T Consensus        12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~   91 (392)
T KOG4693|consen   12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA   91 (392)
T ss_pred             cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence            47899999999999999999998653    34579999999999999875  1     1   246679999999999999


Q ss_pred             EEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCCceE
Q 012184          117 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       117 yi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~  194 (469)
                      |+.||.++....+|-+|.||+.++.|+++.++|-.|.+|.+|++|++ ++.+|||||+..  ..++++++.+|++|.+|.
T Consensus        92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr  170 (392)
T KOG4693|consen   92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR  170 (392)
T ss_pred             EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccceeee
Confidence            99999998777899999999999999999999999999999999999 556999999854  467899999999999999


Q ss_pred             eeeecCCCCCCCcceEEEEECCEEEEEecCCCC---------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184          195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA  265 (469)
Q Consensus       195 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~  265 (469)
                      .+.+.+++|.-|.+|+++.+++.+|||||....         ...+.+..+|+.++.|...++ ....|..|..||....
T Consensus       171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~-~~~~P~GRRSHS~fvY  249 (392)
T KOG4693|consen  171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE-NTMKPGGRRSHSTFVY  249 (392)
T ss_pred             ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC-CCcCCCcccccceEEE
Confidence            999999999999999999999999999996432         235678999999999998654 5566889999998777


Q ss_pred             EEcCCcEEEEEeccCCC---CCceEEEEECCCCCCCCccc---cCCCchhhcchh-hhHHHhhccccc
Q 012184          266 IIEGEHHLVAFGGYNGK---YNNEVFVMRLKPRDIPRPKI---FQSPAAAAAAAS-VTAAYALAKSEK  326 (469)
Q Consensus       266 ~~~~~~~l~v~GG~~~~---~~~~~~~~d~~~~~w~~~~~---~~~~~~~~~~~~-~~~~~~~gg~~~  326 (469)
                          ++.||+|||+++.   ..+|+|.||+.+..|.....   -|.++.+.++++ ...+|.|||..-
T Consensus       250 ----ng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  250 ----NGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             ----cceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence                7899999999875   67999999999999987654   367776665554 456888888765

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=8.1e-40  Score=317.43  Aligned_cols=287  Identities=20%  Similarity=0.282  Sum_probs=223.6

Q ss_pred             ccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC-CCCcceEEEEECCCCeEEEeecCCCC
Q 012184           22 LRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK-SSDSMIVRFIDLETNLCGVMETSGKV  100 (469)
Q Consensus        22 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~-~~~~~~~~~~d~~t~~W~~~~~~g~~  100 (469)
                      +....|..+.+..            +..|.+|.+|++++++++||++||.... ....+++++||+.+++|..+++.+..
T Consensus         4 ~~~~~W~~~~~~~------------~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~   71 (341)
T PLN02153          4 TLQGGWIKVEQKG------------GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV   71 (341)
T ss_pred             ccCCeEEEecCCC------------CCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC
Confidence            4667899998753            2238899999999999999999998643 22457899999999999998865444


Q ss_pred             CC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCC--CCCCCCCCceEEEEcCcEEEEEecCCCC
Q 012184          101 PV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHS  177 (469)
Q Consensus       101 p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~l~v~GG~~~~  177 (469)
                      |. .+.+|++++++++||+|||..... ..+++++||+.+++|+.+++..  ..|.+|.+|+++++ +++||||||.+..
T Consensus        72 p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~  149 (341)
T PLN02153         72 PRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKG  149 (341)
T ss_pred             CCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCC
Confidence            44 345899999999999999987654 4789999999999999987431  23789999999887 6679999998643


Q ss_pred             ------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC--------CCcceEEEEECCCCcE
Q 012184          178 ------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------NGCQETIVLNMTKLAW  243 (469)
Q Consensus       178 ------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------~~~~d~~~~d~~~~~W  243 (469)
                            ..++++++||+.+++|..+...+..|.+|.+|+++.++++|||+||....        ...+++++||+.+++|
T Consensus       150 ~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W  229 (341)
T PLN02153        150 GLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW  229 (341)
T ss_pred             CccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence                  24578999999999999987655567899999999999999999996421        1257899999999999


Q ss_pred             EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC----------CCCCceEEEEECCCCCCCCccc-----cCCCch
Q 012184          244 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN----------GKYNNEVFVMRLKPRDIPRPKI-----FQSPAA  308 (469)
Q Consensus       244 ~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~----------~~~~~~~~~~d~~~~~w~~~~~-----~~~~~~  308 (469)
                      +.+... +..|.+|.+|+++++    +++||||||..          +...+++|.||+.++.|..+..     +|....
T Consensus       230 ~~~~~~-g~~P~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~  304 (341)
T PLN02153        230 TEVETT-GAKPSARSVFAHAVV----GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT  304 (341)
T ss_pred             Eecccc-CCCCCCcceeeeEEE----CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc
Confidence            998643 345678888887776    78999999973          2245799999999999997753     333332


Q ss_pred             hhcchh-h--hHHHhhcccccc
Q 012184          309 AAAAAS-V--TAAYALAKSEKL  327 (469)
Q Consensus       309 ~~~~~~-~--~~~~~~gg~~~~  327 (469)
                      ...++. .  ..+|+|||....
T Consensus       305 ~~~~~~v~~~~~~~~~gG~~~~  326 (341)
T PLN02153        305 AYTTATVYGKNGLLMHGGKLPT  326 (341)
T ss_pred             cccccccCCcceEEEEcCcCCC
Confidence            222222 2  258889998654

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=7.3e-40  Score=334.37  Aligned_cols=254  Identities=12%  Similarity=0.210  Sum_probs=219.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .++.|||.+++|..++++                |.+|.+|++++++++||++||........+++++||+.++.|..++
T Consensus       273 ~v~~yd~~~~~W~~l~~m----------------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~  336 (557)
T PHA02713        273 CILVYNINTMEYSVISTI----------------PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP  336 (557)
T ss_pred             CEEEEeCCCCeEEECCCC----------------CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC
Confidence            789999999999999988                7788899999999999999998644445688999999999999998


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC
Q 012184           96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS  175 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~  175 (469)
                         ++|.+|.++++++++++||++||.+... ..+++++||+.+++|+.++   ++|.+|.+++++++ +++||++||.+
T Consensus       337 ---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~-~g~IYviGG~~  408 (557)
T PHA02713        337 ---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVL-DQYIYIIGGRT  408 (557)
T ss_pred             ---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEE-CCEEEEEeCCC
Confidence               8999999999999999999999986543 5788999999999999986   78999999999988 77899999975


Q ss_pred             CC------------------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCc-ceEEEE
Q 012184          176 HS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC-QETIVL  236 (469)
Q Consensus       176 ~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~-~d~~~~  236 (469)
                      ..                  ..++.+++|||.+++|+.+.   +++.+|..++++.++++|||+||.++.... +.+++|
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             cccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence            32                  13578999999999999875   889999999999999999999998654333 457999


Q ss_pred             ECCC-CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCccccCCC
Q 012184          237 NMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSP  306 (469)
Q Consensus       237 d~~~-~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~~~~~  306 (469)
                      |+.+ ++|+.++++    |.+|.+++++++    +++||++||+++.  ..+.+||+.+++|..+.+-++.
T Consensus       486 dp~~~~~W~~~~~m----~~~r~~~~~~~~----~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        486 NTNTYNGWELITTT----ESRLSALHTILH----DNTIMMLHCYESY--MLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             cCCCCCCeeEcccc----CcccccceeEEE----CCEEEEEeeecce--eehhhcCcccccccchhhhcCC
Confidence            9999 899999876    455677777777    8899999999873  4688999999999977665443

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=2.2e-37  Score=309.97  Aligned_cols=277  Identities=31%  Similarity=0.523  Sum_probs=243.8

Q ss_pred             CEEEcccCCCcccCC-ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            1 MLLRCSIRNYTLLEG-VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG~~~~~~~~~-~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      ||||||...+...++ ++++||..+..|....+.+..             |.+|.+|+++.++++||+|||.+......+
T Consensus        73 ~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~-------------p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~  139 (482)
T KOG0379|consen   73 LYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDE-------------PSPRYGHSLSAVGDKLYLFGGTDKKYRNLN  139 (482)
T ss_pred             EEEECCCCCCCccccceeEEeecCCcccccccccCCC-------------CCcccceeEEEECCeEEEEccccCCCCChh
Confidence            699999888777772 399999999999999999766             899999999999999999999987555688


Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  159 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~  159 (469)
                      +++.||+.|++|..+.+.+.+|++|.+|++++++++||||||.+......|++|+||+.+.+|.++.+.|..|.||++|+
T Consensus       140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~  219 (482)
T KOG0379|consen  140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHA  219 (482)
T ss_pred             heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCce
Confidence            99999999999999999999999999999999999999999999877789999999999999999999999999999999


Q ss_pred             EEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC--CCcceEEEE
Q 012184          160 AALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVL  236 (469)
Q Consensus       160 ~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~d~~~~  236 (469)
                      ++++++ +++||||.. +..+++|+|+||+.+..|..+...+..|.+|+.|+++..+++++++||....  ..+.++|.|
T Consensus       220 ~~~~~~-~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l  298 (482)
T KOG0379|consen  220 MVVVGN-KLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGL  298 (482)
T ss_pred             EEEECC-eEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccc
Confidence            999955 577777766 7789999999999999999888889999999999999999999999998775  358899999


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC--CCCCceEEEEE
Q 012184          237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMR  291 (469)
Q Consensus       237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~d  291 (469)
                      |+.+..|..+.......|.+|..|..+.+...+...+.++||..  ....++++.+.
T Consensus       299 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (482)
T KOG0379|consen  299 DLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQ  355 (482)
T ss_pred             cccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhccccc
Confidence            99999999998766567889999998888777667777777743  33344555443

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=3e-37  Score=309.00  Aligned_cols=263  Identities=31%  Similarity=0.527  Sum_probs=232.7

Q ss_pred             CCCCCCcCeeeEEECCEEEEEccccCCCCCcc-eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC
Q 012184           48 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR  126 (469)
Q Consensus        48 ~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~-~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~  126 (469)
                      ..|.+|++|+++.+++++|+|||........+ ++|+||..+..|.....+|..|.+|.+|.+++++++||+|||.+...
T Consensus        56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~  135 (482)
T KOG0379|consen   56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY  135 (482)
T ss_pred             CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence            34899999999999999999999877665444 69999999999999999999999999999999999999999998755


Q ss_pred             CccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc-ccCcEEEEECCCCceEeeeecCCCCCC
Q 012184          127 KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTG  205 (469)
Q Consensus       127 ~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~  205 (469)
                      ...++++.||+.|++|..+.+.+.+|++|.+|++++++ +++|||||.+... ..|++|+||+.+.+|.++.+.+..|.|
T Consensus       136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p  214 (482)
T KOG0379|consen  136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP  214 (482)
T ss_pred             CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence            56899999999999999999999999999999999995 7899999998765 899999999999999999999999999


Q ss_pred             CcceEEEEECCEEEEEecCC-CCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC--
Q 012184          206 RAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--  282 (469)
Q Consensus       206 r~~~~~~~~~~~l~v~GG~~-~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~--  282 (469)
                      |.+|+++.++++++||||.+ +...++|+|.||+.+..|..+ ...+..|.+|.+|+++..    +..++++||....  
T Consensus       215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~-~~~g~~p~~R~~h~~~~~----~~~~~l~gG~~~~~~  289 (482)
T KOG0379|consen  215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL-PTGGDLPSPRSGHSLTVS----GDHLLLFGGGTDPKQ  289 (482)
T ss_pred             CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec-cccCCCCCCcceeeeEEE----CCEEEEEcCCccccc
Confidence            99999999999999999988 666799999999999999954 446778899999998866    7899999998763  


Q ss_pred             -CCceEEEEECCCCCCCCcccc----CCCchhhcchhhh
Q 012184          283 -YNNEVFVMRLKPRDIPRPKIF----QSPAAAAAAASVT  316 (469)
Q Consensus       283 -~~~~~~~~d~~~~~w~~~~~~----~~~~~~~~~~~~~  316 (469)
                       ...++|.|+..+..|..+...    |.++..+.++...
T Consensus       290 ~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  328 (482)
T KOG0379|consen  290 EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELID  328 (482)
T ss_pred             ccccccccccccccceeeeeccccccccccccccceeec
Confidence             688999999999999876644    4555555544443

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=311.12  Aligned_cols=254  Identities=20%  Similarity=0.233  Sum_probs=214.4

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+..|++.+.+|..+++.                | .+..|+++++++.||++||........++++.||+.+++|..++
T Consensus       265 ~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~  327 (534)
T PHA03098        265 NYITNYSPLSEINTIIDI----------------H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP  327 (534)
T ss_pred             eeeecchhhhhcccccCc----------------c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC
Confidence            566788889999887654                2 34567899999999999998766656678999999999999988


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC
Q 012184           96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS  175 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~  175 (469)
                         ++|.+|.+|++++++++||++||.+.. ...+++++||+.+++|+.++   ++|.||++|+++.+ +++||++||..
T Consensus       328 ---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~-~~~iYv~GG~~  399 (534)
T PHA03098        328 ---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNV-NNLIYVIGGIS  399 (534)
T ss_pred             ---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEE-CCEEEEECCcC
Confidence               788999999999999999999998743 35889999999999999876   78899999999888 67899999964


Q ss_pred             C-CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCC---cceEEEEECCCCcEEEeccCCC
Q 012184          176 H-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIVLNMTKLAWSILTSVKG  251 (469)
Q Consensus       176 ~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~d~~~~d~~~~~W~~~~~~~~  251 (469)
                      . ...++++++||+.+++|..+.   ++|.+|.+|+++.++++|||+||.+....   .+++++||+.+++|+.++.+  
T Consensus       400 ~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--  474 (534)
T PHA03098        400 KNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL--  474 (534)
T ss_pred             CCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC--
Confidence            3 345789999999999999875   78899999999999999999999764432   56799999999999998765  


Q ss_pred             CCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCC
Q 012184          252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQS  305 (469)
Q Consensus       252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~  305 (469)
                        |.+|.+++++..    ++.|||+||.++. ..+++++||+.++.|.....+|.
T Consensus       475 --~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        475 --NFPRINASLCIF----NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             --CcccccceEEEE----CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence              345777877666    7899999998754 37889999999999987766543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.7e-36  Score=305.68  Aligned_cols=220  Identities=25%  Similarity=0.348  Sum_probs=204.7

Q ss_pred             CEEEcccC-CCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            1 MLLRCSIR-NYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG~~-~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      ||++||.+ ....++ ++++|||.+++|+.++++                +.+|.+|+++++++.||++||.++.. ..+
T Consensus       335 lYv~GG~~~~~~~l~-~ve~YD~~~~~W~~~a~M----------------~~~R~~~~v~~l~g~iYavGG~dg~~-~l~  396 (571)
T KOG4441|consen  335 LYVVGGYDSGSDRLS-SVERYDPRTNQWTPVAPM----------------NTKRSDFGVAVLDGKLYAVGGFDGEK-SLN  396 (571)
T ss_pred             EEEEccccCCCcccc-eEEEecCCCCceeccCCc----------------cCccccceeEEECCEEEEEecccccc-ccc
Confidence            69999998 567778 999999999999999998                78999999999999999999998544 677


Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  159 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~  159 (469)
                      ++++||+.+++|..++   +|+.+|.+|++++++++||++||.+....+++++.+|||.+++|+.++   +|+.+|.+++
T Consensus       397 svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g  470 (571)
T KOG4441|consen  397 SVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFG  470 (571)
T ss_pred             cEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---Ccccccccce
Confidence            8999999999999999   889999999999999999999999887767999999999999999998   8889999999


Q ss_pred             EEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184          160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      ++++ +++||++||.+.......+++|||.+++|+.+.   +++.+|..+.++.+++.+|++||+++...++.+..||+.
T Consensus       471 ~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  471 VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA---PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc---cCccccccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence            9998 778999999988767788999999999999984   889999999999999999999999999999999999999


Q ss_pred             CCcEEEecc
Q 012184          240 KLAWSILTS  248 (469)
Q Consensus       240 ~~~W~~~~~  248 (469)
                      +++|+.+..
T Consensus       547 ~d~W~~~~~  555 (571)
T KOG4441|consen  547 TDTWTEVTE  555 (571)
T ss_pred             CCceeeCCC
Confidence            999999876

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=3.3e-35  Score=283.12  Aligned_cols=269  Identities=17%  Similarity=0.220  Sum_probs=209.0

Q ss_pred             CCCcCeeeEEECCEEEEEccccCCC---------CCcceEEEEECCC--CeEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 012184           51 PPMSDHCMVKWGTKLLILGGHYKKS---------SDSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLVGSRLIIF  119 (469)
Q Consensus        51 ~~r~~~~~~~~~~~iy~~GG~~~~~---------~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~  119 (469)
                      +.++++.++++++.||++||.....         ...+++++|+..+  ..|..++   ++|.+|..+++++++++||++
T Consensus         2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyvi   78 (323)
T TIGR03548         2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYI   78 (323)
T ss_pred             CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEE
Confidence            5788999999999999999986542         1446789886332  3798887   789999988999999999999


Q ss_pred             eccCCCCCccCcEEEEECCCCeEE-EeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeee
Q 012184          120 GGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  198 (469)
Q Consensus       120 GG~~~~~~~~~~v~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  198 (469)
                      ||.+... .++++++||+.+++|. .....+++|.+|..|+++++ +++||++||.......+++++||+.+++|+.+. 
T Consensus        79 GG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-  155 (323)
T TIGR03548        79 GGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-  155 (323)
T ss_pred             cCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-
Confidence            9987644 4789999999999983 22334588999999999988 678999999865566899999999999999975 


Q ss_pred             cCCCC-CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC-CCCCCCCCcceEEEEEcCCcEEEEE
Q 012184          199 KGDLV-TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG-RNPLASEGLSVCSAIIEGEHHLVAF  276 (469)
Q Consensus       199 ~~~~p-~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~-~~p~~r~~~s~~~~~~~~~~~l~v~  276 (469)
                        ++| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.++.++. ..|..+.+++  .+++. +++|||+
T Consensus       156 --~~p~~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~--~~~~~-~~~iyv~  229 (323)
T TIGR03548       156 --DFPGEPRVQPVCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAA--SIKIN-ESLLLCI  229 (323)
T ss_pred             --CCCCCCCCcceEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceecccee--EEEEC-CCEEEEE
Confidence              455 479999999999999999997643 35678999999999999987642 2333333333  23332 5799999


Q ss_pred             eccCCC---------------------------------CCceEEEEECCCCCCCCccccC-CCchhh-cchhhhHHHhh
Q 012184          277 GGYNGK---------------------------------YNNEVFVMRLKPRDIPRPKIFQ-SPAAAA-AAASVTAAYAL  321 (469)
Q Consensus       277 GG~~~~---------------------------------~~~~~~~~d~~~~~w~~~~~~~-~~~~~~-~~~~~~~~~~~  321 (469)
                      ||.++.                                 ..+++++||+.+++|...+.+| .++..+ +......+|++
T Consensus       230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~  309 (323)
T TIGR03548       230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSI  309 (323)
T ss_pred             CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEE
Confidence            998642                                 1367999999999999888776 344333 55566679999


Q ss_pred             cccccccCcc
Q 012184          322 AKSEKLDIPK  331 (469)
Q Consensus       322 gg~~~~~~~~  331 (469)
                      ||..++..++
T Consensus       310 GG~~~pg~rt  319 (323)
T TIGR03548       310 NGELKPGVRT  319 (323)
T ss_pred             eccccCCcCC
Confidence            9988766543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1.8e-34  Score=281.06  Aligned_cols=264  Identities=16%  Similarity=0.178  Sum_probs=203.2

Q ss_pred             CCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEEC--CCCeEEEeecCCCCC-CCCcceEEEEECCEEEEEeccC
Q 012184           47 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL--ETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGED  123 (469)
Q Consensus        47 ~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~~  123 (469)
                      +++|.+|..+++++++++||++||...     +++++||+  .+++|..++   ++| .+|.++++++++++||++||..
T Consensus         2 ~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~   73 (346)
T TIGR03547         2 PDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIG   73 (346)
T ss_pred             CCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCC
Confidence            556889999999899999999999742     46899996  578899998   788 5899999999999999999986


Q ss_pred             CCC-----CccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc--------------------
Q 012184          124 RSR-----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI--------------------  178 (469)
Q Consensus       124 ~~~-----~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~--------------------  178 (469)
                      ...     ..++++++||+.+++|+.++.  .+|.+|.+|+++...+++||++||.+...                    
T Consensus        74 ~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~  151 (346)
T TIGR03547        74 KANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK  151 (346)
T ss_pred             CCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence            422     247899999999999999862  45677777877733488899999975321                    


Q ss_pred             --------------ccCcEEEEECCCCceEeeeecCCCCC-CCcceEEEEECCEEEEEecCCCCCC-cceEEEEEC--CC
Q 012184          179 --------------FFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAGITIDENWYIVGGGDNNNG-CQETIVLNM--TK  240 (469)
Q Consensus       179 --------------~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~-~~d~~~~d~--~~  240 (469)
                                    .++++++||+.+++|+.+.   ++|. +|+.|+++.++++|||+||...... ..+++.||+  .+
T Consensus       152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~  228 (346)
T TIGR03547       152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK  228 (346)
T ss_pred             hHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence                          2478999999999999975   6675 6889999999999999999754332 345666654  67


Q ss_pred             CcEEEeccCCCCC---CCCCCCcceEEEEEcCCcEEEEEeccCCC------------------CCceEEEEECCCCCCCC
Q 012184          241 LAWSILTSVKGRN---PLASEGLSVCSAIIEGEHHLVAFGGYNGK------------------YNNEVFVMRLKPRDIPR  299 (469)
Q Consensus       241 ~~W~~~~~~~~~~---p~~r~~~s~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~~~d~~~~~w~~  299 (469)
                      +.|+.++.++.++   +..+.+|+++++    +++|||+||.+..                  ....+.+||+++++|..
T Consensus       229 ~~W~~~~~m~~~r~~~~~~~~~~~a~~~----~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~  304 (346)
T TIGR03547       229 LEWNKLPPLPPPKSSSQEGLAGAFAGIS----NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK  304 (346)
T ss_pred             ceeeecCCCCCCCCCccccccEEeeeEE----CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence            7999998876433   122234433444    6799999997521                  11357899999999999


Q ss_pred             ccccCCCchhhcch-hhhHHHhhcccccc
Q 012184          300 PKIFQSPAAAAAAA-SVTAAYALAKSEKL  327 (469)
Q Consensus       300 ~~~~~~~~~~~~~~-~~~~~~~~gg~~~~  327 (469)
                      +..+|.++..+.++ ....+|++||....
T Consensus       305 ~~~lp~~~~~~~~~~~~~~iyv~GG~~~~  333 (346)
T TIGR03547       305 VGKLPQGLAYGVSVSWNNGVLLIGGENSG  333 (346)
T ss_pred             cCCCCCCceeeEEEEcCCEEEEEeccCCC
Confidence            99999887766553 56779999997643

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=3.3e-34  Score=276.16  Aligned_cols=250  Identities=17%  Similarity=0.203  Sum_probs=192.0

Q ss_pred             CEEEcccCCC----------cccCCceEEEE-cc-CCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEE
Q 012184            1 MLLRCSIRNY----------TLLEGVVMVFD-LR-SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLIL   68 (469)
Q Consensus         1 l~~~GG~~~~----------~~~~~~~~~~d-~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~   68 (469)
                      |||+||....          ...+ ++++|+ +. +.+|..++++                |.+|..++++++++.||++
T Consensus        16 l~v~GG~~~~~~~~~~~g~~~~~~-~v~~~~~~~~~~~W~~~~~l----------------p~~r~~~~~~~~~~~lyvi   78 (323)
T TIGR03548        16 ILVAGGCNFPEDPLAEGGKKKNYK-GIYIAKDENSNLKWVKDGQL----------------PYEAAYGASVSVENGIYYI   78 (323)
T ss_pred             EEEeeccCCCCCchhhCCcEEeee-eeEEEecCCCceeEEEcccC----------------CccccceEEEEECCEEEEE
Confidence            6899996422          3445 788886 33 2379988877                7788888889999999999


Q ss_pred             ccccCCCCCcceEEEEECCCCeEE-EeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee
Q 012184           69 GGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV  147 (469)
Q Consensus        69 GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~  147 (469)
                      ||..... ..+++++||+.+++|. ......++|.+|..|++++++++||++||..... ..+++++||+.+++|+.++ 
T Consensus        79 GG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~-  155 (323)
T TIGR03548        79 GGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELP-  155 (323)
T ss_pred             cCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECC-
Confidence            9987544 5678999999999983 2222237899999999999999999999985433 4789999999999999986 


Q ss_pred             CCCCC-CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecC--CCCCCCcceEE-EEECCEEEEEec
Q 012184          148 TQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAG-ITIDENWYIVGG  223 (469)
Q Consensus       148 ~g~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~-~~~~~~l~v~GG  223 (469)
                        ++| .+|..|+++++ +++||||||.+.. ..+++++||+.+++|+.+....  ..|.++..+++ +..+++|||+||
T Consensus       156 --~~p~~~r~~~~~~~~-~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG  231 (323)
T TIGR03548       156 --DFPGEPRVQPVCVKL-QNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG  231 (323)
T ss_pred             --CCCCCCCCcceEEEE-CCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence              455 47888888777 6789999998643 3467899999999999876321  23444445544 444789999999


Q ss_pred             CCCCC--------------------------------CcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc
Q 012184          224 GDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  271 (469)
Q Consensus       224 ~~~~~--------------------------------~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~  271 (469)
                      .+...                                ..+++++||+.+++|+.++.++   ..+|.+++++.+    ++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~~~~~~----~~  304 (323)
T TIGR03548       232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGAALLLT----GN  304 (323)
T ss_pred             cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCchheEEE----CC
Confidence            76321                                1357999999999999987553   246788888777    88


Q ss_pred             EEEEEeccCC
Q 012184          272 HLVAFGGYNG  281 (469)
Q Consensus       272 ~l~v~GG~~~  281 (469)
                      .||++||...
T Consensus       305 ~iyv~GG~~~  314 (323)
T TIGR03548       305 NIFSINGELK  314 (323)
T ss_pred             EEEEEecccc
Confidence            9999999743

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=6.7e-35  Score=297.93  Aligned_cols=217  Identities=11%  Similarity=0.147  Sum_probs=188.7

Q ss_pred             CEEEcccC-CCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            1 MLLRCSIR-NYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG~~-~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      ||++||.. ....++ .++.|||.+++|..++++                |.+|.+|++++++++||++||..+.. ..+
T Consensus       306 IYviGG~~~~~~~~~-~v~~Yd~~~n~W~~~~~m----------------~~~R~~~~~~~~~g~IYviGG~~~~~-~~~  367 (557)
T PHA02713        306 IIIAGGYNFNNPSLN-KVYKINIENKIHVELPPM----------------IKNRCRFSLAVIDDTIYAIGGQNGTN-VER  367 (557)
T ss_pred             EEEEcCCCCCCCccc-eEEEEECCCCeEeeCCCC----------------cchhhceeEEEECCEEEEECCcCCCC-CCc
Confidence            69999975 344567 999999999999999888                78999999999999999999986443 567


Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC-----------------CccCcEEEEECCCCeE
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR-----------------KLLNDVHFLDLETMTW  142 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~-----------------~~~~~v~~~d~~t~~W  142 (469)
                      ++++|||.+++|..++   ++|.+|.++++++++++||++||.+...                 ..++.+++|||.+++|
T Consensus       368 sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W  444 (557)
T PHA02713        368 TIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW  444 (557)
T ss_pred             eEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence            8999999999999998   8999999999999999999999986421                 1267899999999999


Q ss_pred             EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc-ccCcEEEEECCC-CceEeeeecCCCCCCCcceEEEEECCEEEE
Q 012184          143 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYI  220 (469)
Q Consensus       143 ~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  220 (469)
                      +.++   +++.+|..++++++ +++||++||.+... ..+.+++|||.+ ++|+.+.   ++|.+|..+.++.++++||+
T Consensus       445 ~~v~---~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~---~m~~~r~~~~~~~~~~~iyv  517 (557)
T PHA02713        445 ETLP---NFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT---TTESRLSALHTILHDNTIMM  517 (557)
T ss_pred             eecC---CCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc---ccCcccccceeEEECCEEEE
Confidence            9886   78899999999988 66899999986433 335689999999 8999875   89999999999999999999


Q ss_pred             EecCCCCCCcceEEEEECCCCcEEEecc
Q 012184          221 VGGGDNNNGCQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       221 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~  248 (469)
                      +||.++.   ..+..||+.+++|+.+.+
T Consensus       518 ~Gg~~~~---~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        518 LHCYESY---MLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             Eeeecce---eehhhcCcccccccchhh
Confidence            9998763   468899999999998864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=5.1e-34  Score=277.86  Aligned_cols=253  Identities=17%  Similarity=0.177  Sum_probs=193.6

Q ss_pred             CEEEcccCCCcccCCceEEEEc--cCCceeeeeecccccCCccccCCCCCCC-CCCcCeeeEEECCEEEEEccccCCC--
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDL--RSLAWSNLRLETELDADKTEDSGLLEVL-PPMSDHCMVKWGTKLLILGGHYKKS--   75 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~p-~~r~~~~~~~~~~~iy~~GG~~~~~--   75 (469)
                      |||+||...    + .+++||+  .+++|..++++                | .+|..|++++++++||++||+....  
T Consensus        20 vyv~GG~~~----~-~~~~~d~~~~~~~W~~l~~~----------------p~~~R~~~~~~~~~~~iYv~GG~~~~~~~   78 (346)
T TIGR03547        20 VYVGLGSAG----T-SWYKLDLKKPSKGWQKIADF----------------PGGPRNQAVAAAIDGKLYVFGGIGKANSE   78 (346)
T ss_pred             EEEEccccC----C-eeEEEECCCCCCCceECCCC----------------CCCCcccceEEEECCEEEEEeCCCCCCCC
Confidence            699999632    4 8899996  67899999987                5 4899999999999999999986432  


Q ss_pred             ---CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEE-EECCEEEEEeccCCCC-------------------------
Q 012184           76 ---SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSR-------------------------  126 (469)
Q Consensus        76 ---~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyi~GG~~~~~-------------------------  126 (469)
                         ...+++++||+.+++|+.++.  ++|.+|.+++++ +++++||++||.+...                         
T Consensus        79 ~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T TIGR03547        79 GSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY  156 (346)
T ss_pred             CcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence               145789999999999999972  467788888776 6899999999986320                         


Q ss_pred             --------CccCcEEEEECCCCeEEEeeeCCCCCC-CCCCceEEEEcCcEEEEEecCCCCc-ccCcEEEEEC--CCCceE
Q 012184          127 --------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDL--QTNEWS  194 (469)
Q Consensus       127 --------~~~~~v~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~--~~~~W~  194 (469)
                              ...+++++||+.+++|+.+.   ++|. +|.+++++.+ +++||||||..... ...+++.|++  .+++|.
T Consensus       157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~  232 (346)
T TIGR03547       157 FSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWN  232 (346)
T ss_pred             hCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceee
Confidence                    12478999999999999986   6664 6888888887 67899999975432 3356666664  677999


Q ss_pred             eeeecCCCCCCC-------cceEEEEECCEEEEEecCCCCC-----------------CcceEEEEECCCCcEEEeccCC
Q 012184          195 QPEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIVLNMTKLAWSILTSVK  250 (469)
Q Consensus       195 ~~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~d~~~~d~~~~~W~~~~~~~  250 (469)
                      .+.   ++|.+|       ..|+++.++++|||+||.+...                 ....+.+||+.+++|+.++++|
T Consensus       233 ~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp  309 (346)
T TIGR03547       233 KLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP  309 (346)
T ss_pred             ecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence            875   555544       4666788999999999975211                 1235789999999999988764


Q ss_pred             CCCCCCCCCcceEEEEEcCCcEEEEEeccCC--CCCceEEEEE
Q 012184          251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMR  291 (469)
Q Consensus       251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~d  291 (469)
                          .+|..++++++    ++.|||+||.+.  ...++++.|.
T Consensus       310 ----~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~~~  344 (346)
T TIGR03547       310 ----QGLAYGVSVSW----NNGVLLIGGENSGGKAVTDVYLLS  344 (346)
T ss_pred             ----CCceeeEEEEc----CCEEEEEeccCCCCCEeeeEEEEE
Confidence                44556554444    789999999864  4577787664

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=2.5e-34  Score=296.07  Aligned_cols=223  Identities=18%  Similarity=0.309  Sum_probs=193.9

Q ss_pred             CEEEcccCCC-cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            1 MLLRCSIRNY-TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG~~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      ||++||.... ...+ +++.||+.+++|..++++                |.+|.+|++++++++||++||.... ...+
T Consensus       297 lyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~~----------------~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~  358 (534)
T PHA03098        297 IYFIGGMNKNNLSVN-SVVSYDTKTKSWNKVPEL----------------IYPRKNPGVTVFNNRIYVIGGIYNS-ISLN  358 (534)
T ss_pred             EEEECCCcCCCCeec-cEEEEeCCCCeeeECCCC----------------CcccccceEEEECCEEEEEeCCCCC-Eecc
Confidence            6999997643 4556 899999999999988877                7789999999999999999998743 3567


Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  159 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~  159 (469)
                      ++++||+.+++|+.++   ++|.+|.+|++++++++||++||.......++++++||+.+++|+.+.   ++|.+|.+|+
T Consensus       359 ~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~  432 (534)
T PHA03098        359 TVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGC  432 (534)
T ss_pred             eEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCce
Confidence            8999999999999988   889999999999999999999998655556899999999999999886   6788999999


Q ss_pred             EEEEcCcEEEEEecCCCCc---ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          160 AALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       160 ~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      ++.+ +++||++||.+...   ..+.+++||+.+++|+.+.   ++|.+|..++++.++++|||+||.+.....+++++|
T Consensus       433 ~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y  508 (534)
T PHA03098        433 AIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVY  508 (534)
T ss_pred             EEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCCcccceeEEE
Confidence            8888 67899999975432   3567999999999999975   678889999999999999999998776667899999


Q ss_pred             ECCCCcEEEeccCCC
Q 012184          237 NMTKLAWSILTSVKG  251 (469)
Q Consensus       237 d~~~~~W~~~~~~~~  251 (469)
                      |+.+++|+.++.+|.
T Consensus       509 d~~~~~W~~~~~~p~  523 (534)
T PHA03098        509 DDKTNTWTLFCKFPK  523 (534)
T ss_pred             eCCCCEEEecCCCcc
Confidence            999999999876543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=4.7e-34  Score=261.15  Aligned_cols=247  Identities=25%  Similarity=0.424  Sum_probs=206.6

Q ss_pred             CCCCCCcCeeeEEE--CCEEEEEccccCCCC---CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEec
Q 012184           48 EVLPPMSDHCMVKW--GTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGG  121 (469)
Q Consensus        48 ~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~---~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG  121 (469)
                      ++|.+|...++++.  .+.|++|||.--.+.   ..|++|+||+.++.|+++.+. ..|++|++|.++++. |.||+|||
T Consensus        62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG  140 (521)
T KOG1230|consen   62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG  140 (521)
T ss_pred             CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence            45889999888876  568999999543332   679999999999999999865 579999999999997 89999999


Q ss_pred             cCCCCC-----ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC----CcccCcEEEEECCCCc
Q 012184          122 EDRSRK-----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH----SIFFNDLHVLDLQTNE  192 (469)
Q Consensus       122 ~~~~~~-----~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~----~~~~~~i~~~d~~~~~  192 (469)
                      .-.+..     ...++|.||+.+++|+.+...| .|.||++|.|++. .++|+||||.-.    ..++||+|+||+++-+
T Consensus       141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk  218 (521)
T KOG1230|consen  141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK  218 (521)
T ss_pred             ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence            743211     3568999999999999998765 7999999999999 778999999733    2678999999999999


Q ss_pred             eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCC---------CCCcceEEEEECCC-----CcEEEeccCCCCCCCCC
Q 012184          193 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN---------NNGCQETIVLNMTK-----LAWSILTSVKGRNPLAS  257 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~---------~~~~~d~~~~d~~~-----~~W~~~~~~~~~~p~~r  257 (469)
                      |.++.+.+..|.||++|.+... .+.|||.||+..         ....+|+|.+++.+     -.|+.+.+ .+..|.+|
T Consensus       219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp-~g~kPspR  297 (521)
T KOG1230|consen  219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP-SGVKPSPR  297 (521)
T ss_pred             eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC-CCCCCCCC
Confidence            9999988888999999998887 899999999842         22368999999988     67898865 46668999


Q ss_pred             CCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCcc
Q 012184          258 EGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPK  301 (469)
Q Consensus       258 ~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~  301 (469)
                      .|++++++.   +++-|.|||...          .+.||+|.||+..+.|+...
T Consensus       298 sgfsv~va~---n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q  348 (521)
T KOG1230|consen  298 SGFSVAVAK---NHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ  348 (521)
T ss_pred             CceeEEEec---CCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence            999887763   568999999742          36899999999999998653

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.9e-34  Score=269.68  Aligned_cols=273  Identities=24%  Similarity=0.408  Sum_probs=230.6

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI   80 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~   80 (469)
                      |.||||...| ..+ .+.+|+..++.|.....-++.             |++++.|.++..|.+||+|||..+.+.++|+
T Consensus        45 iviFGGGNEG-iiD-ELHvYNTatnqWf~PavrGDi-------------PpgcAA~GfvcdGtrilvFGGMvEYGkYsNd  109 (830)
T KOG4152|consen   45 IVIFGGGNEG-IID-ELHVYNTATNQWFAPAVRGDI-------------PPGCAAFGFVCDGTRILVFGGMVEYGKYSND  109 (830)
T ss_pred             EEEecCCccc-chh-hhhhhccccceeecchhcCCC-------------CCchhhcceEecCceEEEEccEeeeccccch
Confidence            5789986544 466 899999999999998888776             9999999999999999999999999989999


Q ss_pred             EEEEECCCCeEEEee----cCCCCCCCCcceEEEEECCEEEEEeccCCC--------CCccCcEEEEECCCC----eEEE
Q 012184           81 VRFIDLETNLCGVME----TSGKVPVARGGHSVTLVGSRLIIFGGEDRS--------RKLLNDVHFLDLETM----TWDA  144 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~----~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~--------~~~~~~v~~~d~~t~----~W~~  144 (469)
                      +|.+....=.|+++.    ..|++|.+|.+|+...++++.|+|||..+.        ..|+|++|++++.-+    -|..
T Consensus       110 LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~i  189 (830)
T KOG4152|consen  110 LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDI  189 (830)
T ss_pred             HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEec
Confidence            888766666677775    457889999999999999999999998432        248999999998744    5999


Q ss_pred             eeeCCCCCCCCCCceEEEEc-----CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEE
Q 012184          145 VEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  219 (469)
Q Consensus       145 ~~~~g~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  219 (469)
                      +.+.|..|.||-.|+++++.     ..++|||||+.+ .++.|+|.+|++|.+|.+++..|-.|.||+.|+++.|+|++|
T Consensus       190 p~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMy  268 (830)
T KOG4152|consen  190 PITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMY  268 (830)
T ss_pred             ccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeecccccccCCCCCCcccccceeecceeE
Confidence            99999999999999999883     248999999865 578999999999999999998899999999999999999999


Q ss_pred             EEecCCCC--------------CCcceEEEEECCCCcEEEecc--CC-CCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184          220 IVGGGDNN--------------NGCQETIVLNMTKLAWSILTS--VK-GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK  282 (469)
Q Consensus       220 v~GG~~~~--------------~~~~d~~~~d~~~~~W~~~~~--~~-~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~  282 (469)
                      ||||.-..              .|.+.+-.+|+.+..|..+-.  .. ..+|.+|.||+++++    +.+||+--|.++.
T Consensus       269 vfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi----gtRlYiWSGRDGY  344 (830)
T KOG4152|consen  269 VFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI----GTRLYIWSGRDGY  344 (830)
T ss_pred             EecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe----ccEEEEEeccchh
Confidence            99996211              246778899999999987632  22 236889999999998    8999999998753


Q ss_pred             --------CCceEEEEECC
Q 012184          283 --------YNNEVFVMRLK  293 (469)
Q Consensus       283 --------~~~~~~~~d~~  293 (469)
                              .+.|+|.+|..
T Consensus       345 rKAwnnQVCCkDlWyLdTe  363 (830)
T KOG4152|consen  345 RKAWNNQVCCKDLWYLDTE  363 (830)
T ss_pred             hHhhccccchhhhhhhccc
Confidence                    35678888864

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=2.7e-33  Score=274.71  Aligned_cols=261  Identities=16%  Similarity=0.208  Sum_probs=197.2

Q ss_pred             CEEEcccCCCcccCCceEEEEcc--CCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC----
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK----   74 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~----   74 (469)
                      |||+||...    + .+++||+.  ++.|..+++++               ..+|.+|++++++++||++||+...    
T Consensus        41 iyv~gG~~~----~-~~~~~d~~~~~~~W~~l~~~p---------------~~~r~~~~~v~~~~~IYV~GG~~~~~~~~  100 (376)
T PRK14131         41 VYVGLGSAG----T-SWYKLDLNAPSKGWTKIAAFP---------------GGPREQAVAAFIDGKLYVFGGIGKTNSEG  100 (376)
T ss_pred             EEEEeCCCC----C-eEEEEECCCCCCCeEECCcCC---------------CCCcccceEEEECCEEEEEcCCCCCCCCC
Confidence            689999643    3 68899986  47899988763               2489999999999999999998641    


Q ss_pred             -CCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCC--------------------------
Q 012184           75 -SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSR--------------------------  126 (469)
Q Consensus        75 -~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~--------------------------  126 (469)
                       ....+++++||+.+++|+.++.  ..|.++.+|++++ .+++||++||.....                          
T Consensus       101 ~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~  178 (376)
T PRK14131        101 SPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF  178 (376)
T ss_pred             ceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence             1245789999999999999983  3577788888877 799999999975310                          


Q ss_pred             -------CccCcEEEEECCCCeEEEeeeCCCCCC-CCCCceEEEEcCcEEEEEecCCCC-cccCcEEE--EECCCCceEe
Q 012184          127 -------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHV--LDLQTNEWSQ  195 (469)
Q Consensus       127 -------~~~~~v~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~--~d~~~~~W~~  195 (469)
                             ...+++++||+.+++|+.+.   ++|. +|.+|+++.+ +++|||+||.... ...+++|.  ||+.+++|..
T Consensus       179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~  254 (376)
T PRK14131        179 DKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQK  254 (376)
T ss_pred             cCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceee
Confidence                   12578999999999999875   5665 6778888777 6789999997432 34455654  4668899998


Q ss_pred             eeecCCCCCCCc--------ceEEEEECCEEEEEecCCCCC--------------Cc---ceEEEEECCCCcEEEeccCC
Q 012184          196 PEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN--------------GC---QETIVLNMTKLAWSILTSVK  250 (469)
Q Consensus       196 ~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~--------------~~---~d~~~~d~~~~~W~~~~~~~  250 (469)
                      +.   ++|.+|.        .+.++.++++|||+||.+...              ..   ..+.+||+.++.|+.++.+ 
T Consensus       255 ~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-  330 (376)
T PRK14131        255 LP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-  330 (376)
T ss_pred             cC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-
Confidence            76   5555553        233567899999999975321              11   2456899999999988766 


Q ss_pred             CCCCCCCCCcceEEEEEcCCcEEEEEeccCC--CCCceEEEEECCCCCCC
Q 012184          251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~d~~~~~w~  298 (469)
                         |.+|..++++++    ++.|||+||...  ...++++.|++..+.+.
T Consensus       331 ---p~~r~~~~av~~----~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        331 ---PQGLAYGVSVSW----NNGVLLIGGETAGGKAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             ---CCCccceEEEEe----CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence               455667765555    789999999753  46789999998876654

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=3.9e-34  Score=261.69  Aligned_cols=231  Identities=23%  Similarity=0.361  Sum_probs=196.2

Q ss_pred             CEEEccc-CCC--cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEEC-CEEEEEccccCCCC
Q 012184            1 MLLRCSI-RNY--TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSS   76 (469)
Q Consensus         1 l~~~GG~-~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iy~~GG~~~~~~   76 (469)
                      |+||||- .++  +.+-|+++.||..+++|..+.+.              .+|+||++|.+|++- |.+|+|||.-...+
T Consensus        81 LilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp--------------n~P~pRsshq~va~~s~~l~~fGGEfaSPn  146 (521)
T KOG1230|consen   81 LILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP--------------NAPPPRSSHQAVAVPSNILWLFGGEFASPN  146 (521)
T ss_pred             eEEecceeecceeEEEeeeeeEEeccccceeEeccC--------------CCcCCCccceeEEeccCeEEEeccccCCcc
Confidence            6899993 222  33333999999999999999884              348899999999884 89999999654332


Q ss_pred             -----CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCC---CCccCcEEEEECCCCeEEEeeeC
Q 012184           77 -----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS---RKLLNDVHFLDLETMTWDAVEVT  148 (469)
Q Consensus        77 -----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~---~~~~~~v~~~d~~t~~W~~~~~~  148 (469)
                           ...++|+||+.+++|+++...| .|.+|++|-|+++..+|+||||+...   ..|.|++|+||++|.+|.++.+.
T Consensus       147 q~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps  225 (521)
T KOG1230|consen  147 QEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS  225 (521)
T ss_pred             hhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC
Confidence                 4578999999999999999876 89999999999999999999998653   23799999999999999999998


Q ss_pred             CCCCCCCCCceEEEEcCcEEEEEecCCC---------CcccCcEEEEECCC-----CceEeeeecCCCCCCCcceEEEEE
Q 012184          149 QTPPAPRYDHSAALHANRYLIVFGGCSH---------SIFFNDLHVLDLQT-----NEWSQPEIKGDLVTGRAGHAGITI  214 (469)
Q Consensus       149 g~~p~~r~~~~~~~~~~~~l~v~GG~~~---------~~~~~~i~~~d~~~-----~~W~~~~~~~~~p~~r~~~~~~~~  214 (469)
                      |..|.||++|++.+..++.|||+||++.         ....+|+|.+++.+     -.|.++...+..|.||+++++++.
T Consensus       226 ga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va  305 (521)
T KOG1230|consen  226 GAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA  305 (521)
T ss_pred             CCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe
Confidence            8899999999999986777999999852         35678999999988     569999988999999999998888


Q ss_pred             C-CEEEEEecCCCC---------CCcceEEEEECCCCcEEEe
Q 012184          215 D-ENWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       215 ~-~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~  246 (469)
                      . ++.|.|||....         ...||+|.||+..+.|...
T Consensus       306 ~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  306 KNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             cCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            5 489999996431         2378999999999999875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=5.9e-33  Score=272.30  Aligned_cols=266  Identities=15%  Similarity=0.185  Sum_probs=199.2

Q ss_pred             CCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECC--CCeEEEeecCCCCC-CCCcceEEEEECCEEEEEecc
Q 012184           46 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE--TNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGE  122 (469)
Q Consensus        46 ~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~  122 (469)
                      ++++|.+|..+++++++++||++||...     +.+++||+.  ++.|..++   ++| .+|.++++++++++||++||.
T Consensus        22 l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~   93 (376)
T PRK14131         22 LPDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGI   93 (376)
T ss_pred             CCCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCC
Confidence            4555888888899999999999999643     348999986  47899988   566 589999999999999999998


Q ss_pred             CC-C----CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCC--------------------
Q 012184          123 DR-S----RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--------------------  177 (469)
Q Consensus       123 ~~-~----~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------------------  177 (469)
                      .. .    ...++++++||+.+++|+.+++  ..|.++.+|+++++.+++||+|||....                    
T Consensus        94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~  171 (376)
T PRK14131         94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD  171 (376)
T ss_pred             CCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence            64 1    1347899999999999999863  3467777888777458899999997531                    


Q ss_pred             --------------cccCcEEEEECCCCceEeeeecCCCCC-CCcceEEEEECCEEEEEecCCCCC-CcceEE--EEECC
Q 012184          178 --------------IFFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAGITIDENWYIVGGGDNNN-GCQETI--VLNMT  239 (469)
Q Consensus       178 --------------~~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~-~~~d~~--~~d~~  239 (469)
                                    ...+++++||+.+++|..+.   ++|. +|..|+++.++++|||+||..... ...+++  .||+.
T Consensus       172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~  248 (376)
T PRK14131        172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN  248 (376)
T ss_pred             hhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence                          12478999999999999864   5664 788889999999999999964332 234555  45678


Q ss_pred             CCcEEEeccCCCCCC--CCCCCcceEEEEEcCCcEEEEEeccCCCC---------------C---ceEEEEECCCCCCCC
Q 012184          240 KLAWSILTSVKGRNP--LASEGLSVCSAIIEGEHHLVAFGGYNGKY---------------N---NEVFVMRLKPRDIPR  299 (469)
Q Consensus       240 ~~~W~~~~~~~~~~p--~~r~~~s~~~~~~~~~~~l~v~GG~~~~~---------------~---~~~~~~d~~~~~w~~  299 (469)
                      +.+|..++.++.++.  .++..+.+.++++  +++|||+||.+...               .   ..+.+||+.++.|..
T Consensus       249 ~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~  326 (376)
T PRK14131        249 NLKWQKLPDLPPAPGGSSQEGVAGAFAGYS--NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK  326 (376)
T ss_pred             CcceeecCCCCCCCcCCcCCccceEeceeE--CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence            899999987754321  1111111112222  56899999975311               1   235689999999999


Q ss_pred             ccccCCCchhhcch-hhhHHHhhccccc
Q 012184          300 PKIFQSPAAAAAAA-SVTAAYALAKSEK  326 (469)
Q Consensus       300 ~~~~~~~~~~~~~~-~~~~~~~~gg~~~  326 (469)
                      +..+|.++..+.++ +...+|++||...
T Consensus       327 ~~~lp~~r~~~~av~~~~~iyv~GG~~~  354 (376)
T PRK14131        327 VGELPQGLAYGVSVSWNNGVLLIGGETA  354 (376)
T ss_pred             cCcCCCCccceEEEEeCCEEEEEcCCCC
Confidence            99999888777544 4566999999754

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=5.9e-33  Score=279.80  Aligned_cols=205  Identities=18%  Similarity=0.213  Sum_probs=181.6

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI   80 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~   80 (469)
                      ||++||.......+ .++.|||.+++|..++++                |.+|..+++++++++||++||....    ++
T Consensus       274 lyviGG~~~~~~~~-~v~~Ydp~~~~W~~~~~m----------------~~~r~~~~~v~~~~~iYviGG~~~~----~s  332 (480)
T PHA02790        274 VYLIGGWMNNEIHN-NAIAVNYISNNWIPIPPM----------------NSPRLYASGVPANNKLYVVGGLPNP----TS  332 (480)
T ss_pred             EEEEcCCCCCCcCC-eEEEEECCCCEEEECCCC----------------CchhhcceEEEECCEEEEECCcCCC----Cc
Confidence            68999987666677 899999999999999998                7789999999999999999997532    45


Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  160 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~  160 (469)
                      +++||+.+++|..++   ++|.+|.++++++++++||++||....   .+.+.+|||.+++|+.++   ++|.||.+|++
T Consensus       333 ve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~  403 (480)
T PHA02790        333 VERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCA  403 (480)
T ss_pred             eEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceE
Confidence            899999999999998   899999999999999999999998542   467999999999999986   77899999999


Q ss_pred             EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      +++ +++||++||.        +.+||+.+++|+.++   ++|.+|..++++.++++||++||.+.....+.++.||+.+
T Consensus       404 ~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        404 LVF-GRRLFLVGRN--------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             EEE-CCEEEEECCc--------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence            888 6789999983        578999999999875   7889999999999999999999987655567899999999


Q ss_pred             CcEEEec
Q 012184          241 LAWSILT  247 (469)
Q Consensus       241 ~~W~~~~  247 (469)
                      ++|+...
T Consensus       472 ~~W~~~~  478 (480)
T PHA02790        472 YSWNIWD  478 (480)
T ss_pred             CeEEecC
Confidence            9998753

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=5.5e-31  Score=265.56  Aligned_cols=210  Identities=14%  Similarity=0.180  Sum_probs=180.0

Q ss_pred             eEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184           58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++..++.||++||.... ...+.+++||+.+++|..++   ++|.+|..+++++++++||++||.+.    .+++++||+
T Consensus       267 ~~~~~~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp  338 (480)
T PHA02790        267 STHVGEVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFH  338 (480)
T ss_pred             eEEECCEEEEEcCCCCC-CcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC----CCceEEEEC
Confidence            34589999999997543 35677999999999999999   88999999999999999999999753    256999999


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  217 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  217 (469)
                      .+++|..++   ++|.+|.+|+++++ +++||++||....  .+.+.+|||.+++|+.++   ++|.+|..|+++.++++
T Consensus       339 ~~n~W~~~~---~l~~~r~~~~~~~~-~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~  409 (480)
T PHA02790        339 GDAAWVNMP---SLLKPRCNPAVASI-NNVIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR  409 (480)
T ss_pred             CCCeEEECC---CCCCCCcccEEEEE-CCEEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence            999999886   78899999999988 7789999997543  367999999999999865   78999999999999999


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRD  296 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~  296 (469)
                      |||+||.        +..||+.+++|+.++++    |.+|.+++++++    +++|||+||.++. ..+.+.+||+.++.
T Consensus       410 IYv~GG~--------~e~ydp~~~~W~~~~~m----~~~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        410 LFLVGRN--------AEFYCESSNTWTLIDDP----IYPRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             EEEECCc--------eEEecCCCCcEeEcCCC----CCCccccEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            9999983        57899999999998766    356778877766    7899999998643 35779999999999


Q ss_pred             CCCc
Q 012184          297 IPRP  300 (469)
Q Consensus       297 w~~~  300 (469)
                      |...
T Consensus       474 W~~~  477 (480)
T PHA02790        474 WNIW  477 (480)
T ss_pred             EEec
Confidence            9743

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.6e-32  Score=255.42  Aligned_cols=283  Identities=22%  Similarity=0.361  Sum_probs=233.0

Q ss_pred             cCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCC
Q 012184           23 RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV  102 (469)
Q Consensus        23 ~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  102 (469)
                      .--+|+.+....            ++.|.+|.+|.++++..-|.+|||-+++  ..+.+++||..++.|..-...|+.|+
T Consensus        15 ~~~rWrrV~~~t------------GPvPrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPp   80 (830)
T KOG4152|consen   15 NVVRWRRVQQST------------GPVPRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPP   80 (830)
T ss_pred             cccceEEEeccc------------CCCCCccccchheeeeeeEEEecCCccc--chhhhhhhccccceeecchhcCCCCC
Confidence            345899988765            4568999999999999999999996654  45679999999999999999999999


Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee----CCCCCCCCCCceEEEEcCcEEEEEecCCCC-
Q 012184          103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV----TQTPPAPRYDHSAALHANRYLIVFGGCSHS-  177 (469)
Q Consensus       103 ~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~-  177 (469)
                      +-..|+.+..+.+||+|||.-..+.|+|++|.+..+...|+++.+    .|.+|.||-+|+...++ ++.|+|||...+ 
T Consensus        81 gcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g-nKcYlFGGLaNds  159 (830)
T KOG4152|consen   81 GCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG-NKCYLFGGLANDS  159 (830)
T ss_pred             chhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec-cEeEEeccccccc
Confidence            999999999999999999998888899999999888889988866    47789999999999995 679999996432 


Q ss_pred             --------cccCcEEEEECCCCc----eEeeeecCCCCCCCcceEEEEE------CCEEEEEecCCCCCCcceEEEEECC
Q 012184          178 --------IFFNDLHVLDLQTNE----WSQPEIKGDLVTGRAGHAGITI------DENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       178 --------~~~~~i~~~d~~~~~----W~~~~~~~~~p~~r~~~~~~~~------~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                              .++||+|++++.-+.    |+.+.+.|..|.+|-.|+++++      ..+|||+||.++. .+.|+|.+|++
T Consensus       160 eDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~  238 (830)
T KOG4152|consen  160 EDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLD  238 (830)
T ss_pred             cCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecc
Confidence                    468999999998543    9999889999999999999988      2479999998654 48899999999


Q ss_pred             CCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC-----C----------CCCceEEEEECCCCCCCCcc---
Q 012184          240 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-----G----------KYNNEVFVMRLKPRDIPRPK---  301 (469)
Q Consensus       240 ~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~-----~----------~~~~~~~~~d~~~~~w~~~~---  301 (469)
                      +..|.+. .+.+..|.+|..|+...+    +++||||||.-     .          +..+.+-++++++..|..+-   
T Consensus       239 Tl~W~kp-~~~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~  313 (830)
T KOG4152|consen  239 TLTWNKP-SLSGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDT  313 (830)
T ss_pred             eeecccc-cccCCCCCCcccccceee----cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecc
Confidence            9999995 456888999999999888    89999999962     0          12456777888888886432   


Q ss_pred             ----ccCCCchhhcchh-hhHHHhhccccc
Q 012184          302 ----IFQSPAAAAAAAS-VTAAYALAKSEK  326 (469)
Q Consensus       302 ----~~~~~~~~~~~~~-~~~~~~~gg~~~  326 (469)
                          ..|.++..|+++. .+.+|.-+|...
T Consensus       314 ~ed~tiPR~RAGHCAvAigtRlYiWSGRDG  343 (830)
T KOG4152|consen  314 LEDNTIPRARAGHCAVAIGTRLYIWSGRDG  343 (830)
T ss_pred             ccccccccccccceeEEeccEEEEEeccch
Confidence                2466666665544 445666666544

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.82  E-value=4.9e-19  Score=161.03  Aligned_cols=271  Identities=17%  Similarity=0.245  Sum_probs=198.3

Q ss_pred             CCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECC--CCeEEEeecCCCCC-CCCcceEEEEECCEEEEEec
Q 012184           45 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE--TNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGG  121 (469)
Q Consensus        45 ~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG  121 (469)
                      ++|..|.+--.-+.+.+++.+|+-=|..+..     .|.+|+.  ...|++++   ..| .+|.+..+++++++||+|||
T Consensus        29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~a-----fy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG  100 (381)
T COG3055          29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGTA-----FYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGG  100 (381)
T ss_pred             cCCCCCccccccccceecceEEEEeccCCcc-----ceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeec
Confidence            3566688877778889999999987743332     6777775  45799998   555 67999999999999999999


Q ss_pred             cCCCCC----ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCC--------------------
Q 012184          122 EDRSRK----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--------------------  177 (469)
Q Consensus       122 ~~~~~~----~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------------------  177 (469)
                      ......    ..|++|+||+.+++|..+.+  ..|....++.++.+++..+|++||.+..                    
T Consensus       101 ~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~  178 (381)
T COG3055         101 YGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD  178 (381)
T ss_pred             cccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence            875432    57899999999999999986  3466678899999977799999997521                    


Q ss_pred             --------------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC-CcceEEEEEC--CC
Q 012184          178 --------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNM--TK  240 (469)
Q Consensus       178 --------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~d~~~~d~--~~  240 (469)
                                    ....++..|+|.+++|..+-.  .+..++++.+.+.-++++.++-|.-..+ .+..++++++  ..
T Consensus       179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~  256 (381)
T COG3055         179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN  256 (381)
T ss_pred             HHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCc
Confidence                          034579999999999998631  3356788866666677788887754433 2445666666  46


Q ss_pred             CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC--------------------CCCCceEEEEECCCCCCCCc
Q 012184          241 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--------------------GKYNNEVFVMRLKPRDIPRP  300 (469)
Q Consensus       241 ~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~--------------------~~~~~~~~~~d~~~~~w~~~  300 (469)
                      ..|..++.+|.+....-.+.+-...-.. ++.++|.||.+                    ..+.++||.||  .+.|..+
T Consensus       257 ~~w~~l~~lp~~~~~~~eGvAGaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~  333 (381)
T COG3055         257 LKWLKLSDLPAPIGSNKEGVAGAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV  333 (381)
T ss_pred             eeeeeccCCCCCCCCCccccceecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee
Confidence            7899998777655333233332222111 67888899864                    13578899999  8999999


Q ss_pred             cccCCCchhh-cchhhhHHHhhcccccccCc
Q 012184          301 KIFQSPAAAA-AAASVTAAYALAKSEKLDIP  330 (469)
Q Consensus       301 ~~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~  330 (469)
                      ..+|.+.... +......++++||+...-..
T Consensus       334 GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka  364 (381)
T COG3055         334 GELPQGLAYGVSLSYNNKVLLIGGETSGGKA  364 (381)
T ss_pred             cccCCCccceEEEecCCcEEEEccccCCCee
Confidence            9998865554 44556679999998866544

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.75  E-value=1.4e-16  Score=145.20  Aligned_cols=244  Identities=19%  Similarity=0.257  Sum_probs=174.0

Q ss_pred             ceEEEEccC--CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCC----CcceEEEEECCCC
Q 012184           16 VVMVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS----DSMIVRFIDLETN   89 (469)
Q Consensus        16 ~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~----~~~~~~~~d~~t~   89 (469)
                      ..+.+|+..  ..|..+...+..               +|.+..+++++++||+|||......    ..+++|+||+.++
T Consensus        59 afy~ldL~~~~k~W~~~a~FpG~---------------~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n  123 (381)
T COG3055          59 AFYVLDLKKPGKGWTKIADFPGG---------------ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN  123 (381)
T ss_pred             cceehhhhcCCCCceEcccCCCc---------------ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC
Confidence            567778754  589999998643               8999999999999999999876543    5689999999999


Q ss_pred             eEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCC---------------------------------CCccCcEEEE
Q 012184           90 LCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRS---------------------------------RKLLNDVHFL  135 (469)
Q Consensus        90 ~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~---------------------------------~~~~~~v~~~  135 (469)
                      +|.++.+.  .|....+++++..++ .||++||++..                                 -.+..++..|
T Consensus       124 sW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy  201 (381)
T COG3055         124 SWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY  201 (381)
T ss_pred             hhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence            99999974  577788999999988 89999998411                                 1246789999


Q ss_pred             ECCCCeEEEeeeCCCCC-CCCCCceEEEEcCcEEEEEecCCC-CcccCcEEEEECC--CCceEeeeecCCCCCCCc----
Q 012184          136 DLETMTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSH-SIFFNDLHVLDLQ--TNEWSQPEIKGDLVTGRA----  207 (469)
Q Consensus       136 d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~i~~~d~~--~~~W~~~~~~~~~p~~r~----  207 (469)
                      +|.++.|+..   |..| .++++ +++++.++++.++-|.-. .-++..++.+++.  ..+|..+.   ++|.+.+    
T Consensus       202 ~p~~n~W~~~---G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~e  274 (381)
T COG3055         202 DPSTNQWRNL---GENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKE  274 (381)
T ss_pred             ccccchhhhc---CcCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCcc
Confidence            9999999887   3344 56666 445555777888877643 3566778888875  45699875   3333322    


Q ss_pred             ---ceEEEEECCEEEEEecCCCC-------------------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184          208 ---GHAGITIDENWYIVGGGDNN-------------------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA  265 (469)
Q Consensus       208 ---~~~~~~~~~~l~v~GG~~~~-------------------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~  265 (469)
                         ++-.-..++.++|.||.+-.                   ...+++|+||  .+.|+.+..+|...     ++.+.. 
T Consensus       275 GvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l-----~YG~s~-  346 (381)
T COG3055         275 GVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGL-----AYGVSL-  346 (381)
T ss_pred             ccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCc-----cceEEE-
Confidence               22223446788888884211                   1245789998  99999998876422     122111 


Q ss_pred             EEcCCcEEEEEeccC--CCCCceEEEEECC
Q 012184          266 IIEGEHHLVAFGGYN--GKYNNEVFVMRLK  293 (469)
Q Consensus       266 ~~~~~~~l~v~GG~~--~~~~~~~~~~d~~  293 (469)
                        ..++.+|++||.+  +.....++.+...
T Consensus       347 --~~nn~vl~IGGE~~~Gka~~~v~~l~~~  374 (381)
T COG3055         347 --SYNNKVLLIGGETSGGKATTRVYSLSWD  374 (381)
T ss_pred             --ecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence              1167899999975  4466677766544

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.66  E-value=5.7e-18  Score=159.38  Aligned_cols=276  Identities=18%  Similarity=0.244  Sum_probs=190.4

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECC--EEEEEccccCCCC--
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS--   76 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~iy~~GG~~~~~~--   76 (469)
                      ||+.||.+.-..++ ++|.|+...+.|+.+.--+..             |..|..|.+|..-.  +||+.|-+-+...  
T Consensus       275 iYLYGGWdG~~~l~-DFW~Y~v~e~~W~~iN~~t~~-------------PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~  340 (723)
T KOG2437|consen  275 VYLYGGWDGTQDLA-DFWAYSVKENQWTCINRDTEG-------------PGARSCHRMVIDISRRKLYLLGRYLDSSVRN  340 (723)
T ss_pred             EEEecCcccchhHH-HHHhhcCCcceeEEeecCCCC-------------CcchhhhhhhhhhhHhHHhhhhhcccccccc
Confidence            69999999999999 999999999999999887655             89999999998865  8999998754322  


Q ss_pred             ---CcceEEEEECCCCeEEEeecCC---CCCCCCcceEEEEECCE--EEEEeccCCC--CCccCcEEEEECCCCeEEEee
Q 012184           77 ---DSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTLVGSR--LIIFGGEDRS--RKLLNDVHFLDLETMTWDAVE  146 (469)
Q Consensus        77 ---~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~~~~--lyi~GG~~~~--~~~~~~v~~~d~~t~~W~~~~  146 (469)
                         ..+++|+||..++.|.-+....   -.|.....|.|++.+++  ||+|||..-.  .....-+|.||+....|..+.
T Consensus       341 ~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~  420 (723)
T KOG2437|consen  341 SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLR  420 (723)
T ss_pred             ccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHH
Confidence               4578999999999999886321   25888999999999887  9999998532  234667999999999997654


Q ss_pred             eC----CC---CCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeee----cCCCCCCCcceEEEEE
Q 012184          147 VT----QT---PPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI----KGDLVTGRAGHAGITI  214 (469)
Q Consensus       147 ~~----g~---~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~----~~~~p~~r~~~~~~~~  214 (469)
                      ..    ++   .-..|.+|++-... ++++|+|||...+.-++-...|++....-..++.    ...+.+.++...-+.+
T Consensus       421 e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~  500 (723)
T KOG2437|consen  421 EDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATI  500 (723)
T ss_pred             HHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhhhccc
Confidence            21    11   12357788876654 5789999998887777777788765544332221    0112222222222333


Q ss_pred             ---CCEEEEEecCCCC------CCcceEEEEECCCCcEEEeccCC--------------------CCCCCCCCCcceEEE
Q 012184          215 ---DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTSVK--------------------GRNPLASEGLSVCSA  265 (469)
Q Consensus       215 ---~~~l~v~GG~~~~------~~~~d~~~~d~~~~~W~~~~~~~--------------------~~~p~~r~~~s~~~~  265 (469)
                         .+.|.+.-|+...      ...+.+|+|++.++.|.++..+.                    ...+.+|.+|..++.
T Consensus       501 dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~d  580 (723)
T KOG2437|consen  501 DPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYD  580 (723)
T ss_pred             CCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHH
Confidence               3457766675321      23578999999999998763211                    112455666664443


Q ss_pred             EEcCCcEEEEEeccCCC------CCceEEEEEC
Q 012184          266 IIEGEHHLVAFGGYNGK------YNNEVFVMRL  292 (469)
Q Consensus       266 ~~~~~~~l~v~GG~~~~------~~~~~~~~d~  292 (469)
                      ..  ....|.+||..+.      ...|.|.+++
T Consensus       581 L~--~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I  611 (723)
T KOG2437|consen  581 LL--HKVHYLFGGNPGKSCSPKMRLDDFWSLKI  611 (723)
T ss_pred             Hh--hhhhhhhcCCCCCCCCchhhhhhHHHHhh
Confidence            22  4567888987654      1344555554

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.65  E-value=1.6e-16  Score=149.83  Aligned_cols=272  Identities=18%  Similarity=0.243  Sum_probs=186.7

Q ss_pred             EccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECC--EEEEEccccCCCCCcceEEEEECCCCeEEEeecCC
Q 012184           21 DLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG   98 (469)
Q Consensus        21 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g   98 (469)
                      .+.+.+|+.+++.....  ...    ...|..|.||.+|.-.+  .||++||+++-. ...++|.|+...+.|.-+...+
T Consensus       235 ~ey~~~W~~i~~~~~~~--~~~----~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t  307 (723)
T KOG2437|consen  235 QEYKPRWSQIIPKSTKG--DGE----DNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDT  307 (723)
T ss_pred             ccccccccccCchhhcc--ccc----ccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCC
Confidence            45567899998764211  111    13388999999998855  999999998765 4677999999999999998776


Q ss_pred             CCCCCCcceEEEEECC--EEEEEeccCCCC-----CccCcEEEEECCCCeEEEeeeC---CCCCCCCCCceEEEEcC-cE
Q 012184           99 KVPVARGGHSVTLVGS--RLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVT---QTPPAPRYDHSAALHAN-RY  167 (469)
Q Consensus        99 ~~p~~r~~~~~~~~~~--~lyi~GG~~~~~-----~~~~~v~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~-~~  167 (469)
                      ..|-+|..|-|+..-.  +||++|-+-+..     ....++|+||.+++.|..+.-.   ..-|...+.|.|+++++ +.
T Consensus       308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~  387 (723)
T KOG2437|consen  308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM  387 (723)
T ss_pred             CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence            7899999999998766  899999874422     2467899999999999988642   13477889999999864 35


Q ss_pred             EEEEecCCCC---cccCcEEEEECCCCceEeeeec----C---CCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEE
Q 012184          168 LIVFGGCSHS---IFFNDLHVLDLQTNEWSQPEIK----G---DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIV  235 (469)
Q Consensus       168 l~v~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~----~---~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~  235 (469)
                      +|||||....   ....-+|.||.....|..+...    +   .....|.+|.+-.+  ++++|++||......++=+..
T Consensus       388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~  467 (723)
T KOG2437|consen  388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFS  467 (723)
T ss_pred             EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhc
Confidence            9999997543   3456799999999999875421    1   11345778876544  568999999765555554556


Q ss_pred             EECCCCcEEEeccC--CCCCCCCCCCcceEEEEEcC-CcEEEEEeccC-------CCCCceEEEEECCCCCCCCc
Q 012184          236 LNMTKLAWSILTSV--KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPRP  300 (469)
Q Consensus       236 ~d~~~~~W~~~~~~--~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~-------~~~~~~~~~~d~~~~~w~~~  300 (469)
                      ||+....=..+...  ....-.|..++... .++++ .+.|.+.-|..       +...+.+|+|++.++.|...
T Consensus       468 y~I~~E~~~~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI  541 (723)
T KOG2437|consen  468 YDIDSEHVDIISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCI  541 (723)
T ss_pred             ceeccccchhhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhH
Confidence            65543322211110  00001112233333 23344 66777777753       22567899999999988643

>PF13964 Kelch_6: Kelch motif

Probab=99.25  E-value=1.6e-11  Score=82.87  Aligned_cols=50  Identities=30%  Similarity=0.346  Sum_probs=45.8

Q ss_pred             CCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCC
Q 012184           52 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR  104 (469)
Q Consensus        52 ~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  104 (469)
                      +|.+|++++++++||++||.......++++++||+.|++|+.++   +||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence            68999999999999999999886667899999999999999998   788876

>PLN02772 guanylate kinase

Probab=99.23  E-value=7.8e-11  Score=112.28  Aligned_cols=90  Identities=21%  Similarity=0.284  Sum_probs=79.8

Q ss_pred             CCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcc
Q 012184          100 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF  179 (469)
Q Consensus       100 ~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~  179 (469)
                      .+.++..++++++++++|+|||.+.....++.+++||+.|++|..+.+.|..|.||.+|+++++++++|+||++.+... 
T Consensus        21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-   99 (398)
T PLN02772         21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-   99 (398)
T ss_pred             cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence            4568899999999999999999888665789999999999999999999999999999999999999999999865442 


Q ss_pred             cCcEEEEECCCC
Q 012184          180 FNDLHVLDLQTN  191 (469)
Q Consensus       180 ~~~i~~~d~~~~  191 (469)
                       .++|.+.+.|.
T Consensus       100 -~~~w~l~~~t~  110 (398)
T PLN02772        100 -DSIWFLEVDTP  110 (398)
T ss_pred             -cceEEEEcCCH
Confidence             67898887764

>PF13964 Kelch_6: Kelch motif

Probab=99.18  E-value=6.8e-11  Score=79.78  Aligned_cols=50  Identities=46%  Similarity=0.766  Sum_probs=45.3

Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184          103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  155 (469)
Q Consensus       103 ~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r  155 (469)
                      +|.+|++++++++||+|||.......++++++||+.+++|+.++   ++|.||
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence            58899999999999999999886667999999999999999996   777776

>PLN02772 guanylate kinase

Probab=99.08  E-value=8.9e-10  Score=105.16  Aligned_cols=88  Identities=22%  Similarity=0.310  Sum_probs=77.2

Q ss_pred             CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCc
Q 012184           50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKL  128 (469)
Q Consensus        50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~  128 (469)
                      +.++.+|+++.+++++|+|||.......++.+++||+.|.+|......|..|.+|.+|++++++ ++|+||++....   
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---   98 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---   98 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence            4588999999999999999998876557899999999999999999999999999999999995 689999876553   


Q ss_pred             cCcEEEEECCCC
Q 012184          129 LNDVHFLDLETM  140 (469)
Q Consensus       129 ~~~v~~~d~~t~  140 (469)
                      -+++|.+.+.|.
T Consensus        99 ~~~~w~l~~~t~  110 (398)
T PLN02772         99 DDSIWFLEVDTP  110 (398)
T ss_pred             ccceEEEEcCCH
Confidence            367898887764

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.03  E-value=5.6e-10  Score=74.28  Aligned_cols=44  Identities=30%  Similarity=0.385  Sum_probs=41.0

Q ss_pred             CCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           52 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        52 ~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      ||.+|++++++++||++||.......++++++||+.+++|+.++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~   44 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP   44 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence            68999999999999999999986678899999999999999998

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.03  E-value=7.6e-10  Score=74.15  Aligned_cols=48  Identities=42%  Similarity=0.758  Sum_probs=42.5

Q ss_pred             CCEEEEEeccC-CCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE
Q 012184          113 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH  163 (469)
Q Consensus       113 ~~~lyi~GG~~-~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~  163 (469)
                      +++||||||.+ .....+|++|+||+.+++|+.+   +++|.+|++|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence            57899999998 4556799999999999999988   588999999999874

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.00  E-value=8.6e-10  Score=73.89  Aligned_cols=48  Identities=31%  Similarity=0.504  Sum_probs=42.4

Q ss_pred             CCEEEEEcccc-CCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE
Q 012184           62 GTKLLILGGHY-KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV  112 (469)
Q Consensus        62 ~~~iy~~GG~~-~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~  112 (469)
                      |++||||||.. .....++++|+||+.+++|+++.   ++|.+|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence            68999999998 34557899999999999999994   89999999999874

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.99  E-value=1.3e-08  Score=90.50  Aligned_cols=159  Identities=21%  Similarity=0.345  Sum_probs=107.5

Q ss_pred             EEEEEeccCCCCCccCcEEEEECCCCe--------EEEeeeCCCCCCCCCCceEEEEc---CcEEEEEecCCCC------
Q 012184          115 RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHS------  177 (469)
Q Consensus       115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~~~---~~~l~v~GG~~~~------  177 (469)
                      ..+|.||.+.+...++.+|+..+.+..        +.+....|+.|.+|++|++.++.   ....++|||.+.-      
T Consensus        40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT  119 (337)
T PF03089_consen   40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT  119 (337)
T ss_pred             eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence            366779999988889999998876543        45555578999999999998774   4578899997421      


Q ss_pred             --------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC--CcceEEEEECC--CC-cEE
Q 012184          178 --------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN--GCQETIVLNMT--KL-AWS  244 (469)
Q Consensus       178 --------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~--~~~d~~~~d~~--~~-~W~  244 (469)
                              .+...|+.+|++-+..+... .+.+..+-++|.+..-+|.+|++||+.-..  ....++++.+.  -+ -..
T Consensus       120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v  198 (337)
T PF03089_consen  120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV  198 (337)
T ss_pred             hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence                    24567999999988887654 346677889998888899999999985433  23445554321  11 111


Q ss_pred             EeccCCCCCCCCCCCcceEE--EEEcCCcEEEEEeccCC
Q 012184          245 ILTSVKGRNPLASEGLSVCS--AIIEGEHHLVAFGGYNG  281 (469)
Q Consensus       245 ~~~~~~~~~p~~r~~~s~~~--~~~~~~~~l~v~GG~~~  281 (469)
                      .+..+.       .+.++.+  ++-.+.+..+|+||+..
T Consensus       199 sC~vl~-------~glSisSAIvt~~~~~e~iIlGGY~s  230 (337)
T PF03089_consen  199 SCTVLQ-------GGLSISSAIVTQTGPHEYIILGGYQS  230 (337)
T ss_pred             EEEECC-------CCceEeeeeEeecCCCceEEEecccc
Confidence            111111       2333333  33344678999999853

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.94  E-value=3e-09  Score=71.27  Aligned_cols=45  Identities=29%  Similarity=0.309  Sum_probs=40.0

Q ss_pred             CCcCeeeEEECCEEEEEccc--cCCCCCcceEEEEECCCCeEEEeec
Q 012184           52 PMSDHCMVKWGTKLLILGGH--YKKSSDSMIVRFIDLETNLCGVMET   96 (469)
Q Consensus        52 ~r~~~~~~~~~~~iy~~GG~--~~~~~~~~~~~~~d~~t~~W~~~~~   96 (469)
                      ||.+|++++++++||+|||+  .......+++++||+.+.+|+.+++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            68999999999999999999  3444578999999999999999983

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.92  E-value=3.4e-09  Score=71.00  Aligned_cols=46  Identities=33%  Similarity=0.580  Sum_probs=40.8

Q ss_pred             CCcceEEEEECCEEEEEecc--CCCCCccCcEEEEECCCCeEEEeeeC
Q 012184          103 ARGGHSVTLVGSRLIIFGGE--DRSRKLLNDVHFLDLETMTWDAVEVT  148 (469)
Q Consensus       103 ~r~~~~~~~~~~~lyi~GG~--~~~~~~~~~v~~~d~~t~~W~~~~~~  148 (469)
                      +|.+|++++++++||+|||+  .......+++++||+.+++|+.++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence            68999999999999999999  44556899999999999999998743

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.92  E-value=1.4e-09  Score=73.00  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=32.0

Q ss_pred             CCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCC
Q 012184           52 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP  101 (469)
Q Consensus        52 ~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p  101 (469)
                      ||.+|+++.+ ++.||||||........+++|.||+.+++|++++   ++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence            6999999999 5899999999887678899999999999999996   555

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.91  E-value=2.4e-09  Score=71.15  Aligned_cols=45  Identities=33%  Similarity=0.649  Sum_probs=41.1

Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee
Q 012184          103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV  147 (469)
Q Consensus       103 ~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~  147 (469)
                      +|.+|++++++++||++||.+.....++++++||+.+++|+.+++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~   45 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP   45 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence            689999999999999999999866789999999999999999873

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.90  E-value=5.4e-07  Score=80.43  Aligned_cols=159  Identities=22%  Similarity=0.269  Sum_probs=102.4

Q ss_pred             EEEEccccCCCCCcceEEEEECCCCe--------EEEeecCCCCCCCCcceEEEEEC--C--EEEEEeccCCC-------
Q 012184           65 LLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVARGGHSVTLVG--S--RLIIFGGEDRS-------  125 (469)
Q Consensus        65 iy~~GG~~~~~~~~~~~~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~~~--~--~lyi~GG~~~~-------  125 (469)
                      -++-||.+.++..++.+|++...+..        .......|+.|.+|++|++.++.  +  -+++|||..--       
T Consensus        41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT  120 (337)
T PF03089_consen   41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT  120 (337)
T ss_pred             EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence            45669999988888899998876554        33444568999999999999883  2  48999997421       


Q ss_pred             ------CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCC---ceE
Q 012184          126 ------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTN---EWS  194 (469)
Q Consensus       126 ------~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~---~W~  194 (469)
                            -.+...|+.+|+.-+.++.... ..+....+.|.+.+- ++.+|++||+.-  +.+...++++..+--   -+.
T Consensus       121 enWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v  198 (337)
T PF03089_consen  121 ENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV  198 (337)
T ss_pred             hhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence                  1245679999999998876642 234455666666665 778999999854  345556666653211   111


Q ss_pred             eeeecCCCCCCCcceEE--EEEC-CEEEEEecCCCCC
Q 012184          195 QPEIKGDLVTGRAGHAG--ITID-ENWYIVGGGDNNN  228 (469)
Q Consensus       195 ~~~~~~~~p~~r~~~~~--~~~~-~~l~v~GG~~~~~  228 (469)
                      ...   .++.+.+..+|  +..+ +..+|+||+....
T Consensus       199 sC~---vl~~glSisSAIvt~~~~~e~iIlGGY~sds  232 (337)
T PF03089_consen  199 SCT---VLQGGLSISSAIVTQTGPHEYIILGGYQSDS  232 (337)
T ss_pred             EEE---ECCCCceEeeeeEeecCCCceEEEecccccc
Confidence            111   12233333222  2223 5688899985543

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.84  E-value=3.7e-09  Score=70.90  Aligned_cols=44  Identities=41%  Similarity=0.733  Sum_probs=30.0

Q ss_pred             CCCCceEEEEcCcEEEEEecCCCC-cccCcEEEEECCCCceEeee
Q 012184          154 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       154 ~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~~d~~~~~W~~~~  197 (469)
                      ||++|+++.+.+++||||||.+.. ..++++|+||+.+++|+.+.
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~   45 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP   45 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence            699999999977899999999776 68999999999999999983

>PF13854 Kelch_5: Kelch motif

Probab=98.79  E-value=1.3e-08  Score=65.48  Aligned_cols=40  Identities=28%  Similarity=0.320  Sum_probs=35.9

Q ss_pred             CCCCcCeeeEEECCEEEEEccccC-CCCCcceEEEEECCCC
Q 012184           50 LPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETN   89 (469)
Q Consensus        50 p~~r~~~~~~~~~~~iy~~GG~~~-~~~~~~~~~~~d~~t~   89 (469)
                      |.+|.+|++++++++||+|||... ....++++|+||+.++
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            889999999999999999999984 5567899999999874

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.71  E-value=2.1e-06  Score=77.56  Aligned_cols=176  Identities=14%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceE-EEEECCEEEEEeccCCCCCccCcEEEEECCC----CeEEEeeeCCCCCCCC
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHS-VTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPR  155 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~-~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t----~~W~~~~~~g~~p~~r  155 (469)
                      --.||+.|++++.+...    .-....+ +..-++++++.||....   ...+..|++.+    ..|.+...  .|..+|
T Consensus        48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~R  118 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGR  118 (243)
T ss_pred             EEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCC
Confidence            45689999999988632    2222222 22236899999998652   45677888765    67887652  478899


Q ss_pred             CCceEEEEcCcEEEEEecCCCCcccCcEEEEECC-C-----CceEeeeec-CCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184          156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-T-----NEWSQPEIK-GDLVTGRAGHAGITIDENWYIVGGGDNNN  228 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~-----~~W~~~~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  228 (469)
                      .+.+++.+.|++++|+||...     ..+-|-+. .     ..|..+... ...+..-+-+....=+++|++++..    
T Consensus       119 WYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~----  189 (243)
T PF07250_consen  119 WYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR----  189 (243)
T ss_pred             ccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence            999999999999999999762     22333332 1     122222211 1123333444445458899999773    


Q ss_pred             CcceEEEEECCCCcE-EEeccCCCCC-CCCCCCcceEEEEE--cC----CcEEEEEec
Q 012184          229 GCQETIVLNMTKLAW-SILTSVKGRN-PLASEGLSVCSAII--EG----EHHLVAFGG  278 (469)
Q Consensus       229 ~~~d~~~~d~~~~~W-~~~~~~~~~~-p~~r~~~s~~~~~~--~~----~~~l~v~GG  278 (469)
                         +..+||..++.+ +.++.+|+.. -.|-.+. .+...+  .+    ...|+|+||
T Consensus       190 ---~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgs-svmLPl~~~~~~~~~~evlvCGG  243 (243)
T PF07250_consen  190 ---GSIIYDYKTNTVVRTLPDLPGGPRNYPASGS-SVMLPLTDTPPNNYTAEVLVCGG  243 (243)
T ss_pred             ---CcEEEeCCCCeEEeeCCCCCCCceecCCCcc-eEEecCccCCCCCCCeEEEEeCC
Confidence               567999999987 6788877642 1122222 222223  11    347888887

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13854 Kelch_5: Kelch motif

Probab=98.68  E-value=5.2e-08  Score=62.65  Aligned_cols=41  Identities=39%  Similarity=0.686  Sum_probs=36.5

Q ss_pred             CCCCCcceEEEEECCEEEEEeccCC-CCCccCcEEEEECCCC
Q 012184          100 VPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM  140 (469)
Q Consensus       100 ~p~~r~~~~~~~~~~~lyi~GG~~~-~~~~~~~v~~~d~~t~  140 (469)
                      +|.+|.+|++++++++||+|||... ....++++|+||+.+.
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            4889999999999999999999994 5668999999998763

>smart00612 Kelch Kelch domain

Probab=98.53  E-value=1.1e-07  Score=63.03  Aligned_cols=46  Identities=20%  Similarity=0.233  Sum_probs=40.3

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECC
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT   63 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~   63 (469)
                      ||++||......++ +++.|||.+++|+..+++                |.+|..|+++++++
T Consensus         2 iyv~GG~~~~~~~~-~v~~yd~~~~~W~~~~~~----------------~~~r~~~~~~~~~g   47 (47)
T smart00612        2 IYVVGGFDGGQRLK-SVEVYDPETNKWTPLPSM----------------PTPRSGHGVAVING   47 (47)
T ss_pred             EEEEeCCCCCceee-eEEEECCCCCeEccCCCC----------------CCccccceEEEeCC
Confidence            69999987666778 999999999999998887                78999999988764

>smart00612 Kelch Kelch domain

Probab=98.51  E-value=1.8e-07  Score=61.99  Aligned_cols=47  Identities=28%  Similarity=0.470  Sum_probs=40.7

Q ss_pred             EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC
Q 012184          167 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  216 (469)
Q Consensus       167 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  216 (469)
                      +||++||......++++++||+.+++|+.+.   ++|.+|..|+++.+++
T Consensus         1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence            4899999876667899999999999999865   7899999999888764

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.47  E-value=0.00014  Score=66.53  Aligned_cols=200  Identities=14%  Similarity=0.128  Sum_probs=109.6

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCC---Ccce-EEEEEC----C-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCC
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVA---RGGH-SVTLVG----S-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  150 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~---r~~~-~~~~~~----~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~  150 (469)
                      .++++||.|+.|..++.   ++.+   ...+ ....++    . +++.+....... ....+.+|+..++.|+.+...  
T Consensus        15 ~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~--   88 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECS--   88 (230)
T ss_pred             cEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccC--
Confidence            48999999999999973   2221   1111 111122    2 465554432111 345789999999999998632  


Q ss_pred             CCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCC----cceEEEEECCEEEEEecCC
Q 012184          151 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGD  225 (469)
Q Consensus       151 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~  225 (469)
                      .+........+.+ ++.+|-+...........|..||+.+.+|.. +.    +|..+    ....++.++++|.++....
T Consensus        89 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~  163 (230)
T TIGR01640        89 PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKK  163 (230)
T ss_pred             CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecC
Confidence            1211112224445 7778877643321111269999999999995 43    23322    2335666788888776532


Q ss_pred             CCCCcceEEEEE-CCCCcEEEeccCCCC-CCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          226 NNNGCQETIVLN-MTKLAWSILTSVKGR-NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       226 ~~~~~~d~~~~d-~~~~~W~~~~~~~~~-~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .. ..-++|+++ .....|+++-.++.. .+..+.. ......++ ++.|++.-...  ...-+..||+.++
T Consensus       164 ~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~-~~~~~~~~-~g~I~~~~~~~--~~~~~~~y~~~~~  230 (230)
T TIGR01640       164 DT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD-NFLSGFTD-KGEIVLCCEDE--NPFYIFYYNVGEN  230 (230)
T ss_pred             CC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-eeEeEEee-CCEEEEEeCCC--CceEEEEEeccCC
Confidence            21 235889886 445679986554421 1111111 11223334 35666554421  0113888888654

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.26  E-value=3e-05  Score=70.12  Aligned_cols=151  Identities=18%  Similarity=0.246  Sum_probs=93.8

Q ss_pred             EEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC----CceEeeeecCCCCCCCc
Q 012184          132 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT----NEWSQPEIKGDLVTGRA  207 (469)
Q Consensus       132 v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~----~~W~~~~~~~~~p~~r~  207 (469)
                      -..||+.+++++.+.+    +....+.+.+...|+.++++||....  ...+-.|++.+    ..|....  ..+-.+|+
T Consensus        48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~--~~m~~~RW  119 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESP--NDMQSGRW  119 (243)
T ss_pred             EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECc--ccccCCCc
Confidence            4579999999987753    33444444455568899999998653  35677888765    5688754  35889999


Q ss_pred             ceEEEEE-CCEEEEEecCCCCCCcceEEEEECCC------CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184          208 GHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK------LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  280 (469)
Q Consensus       208 ~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~------~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~  280 (469)
                      ..++..+ +++++|+||....     .+.|-+..      ..|..+.......+.  ..+-.  +.+.+++.||+++.. 
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~--nlYP~--~~llPdG~lFi~an~-  189 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPN--NLYPF--VHLLPDGNLFIFANR-  189 (243)
T ss_pred             cccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCcc--ccCce--EEEcCCCCEEEEEcC-
Confidence            9998877 6789999997522     22332321      122222211111111  11211  222336799999974 


Q ss_pred             CCCCceEEEEECCCCCC-CCccccCC
Q 012184          281 GKYNNEVFVMRLKPRDI-PRPKIFQS  305 (469)
Q Consensus       281 ~~~~~~~~~~d~~~~~w-~~~~~~~~  305 (469)
                           +-.+||..++.+ ...+.+|.
T Consensus       190 -----~s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  190 -----GSIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             -----CcEEEeCCCCeEEeeCCCCCC
Confidence                 467889988876 55666654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.22  E-value=0.00067  Score=61.95  Aligned_cols=200  Identities=13%  Similarity=0.015  Sum_probs=110.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCe-eeEEE----CC-EEEEEccccCCCCCcceEEEEECCCC
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDH-CMVKW----GT-KLLILGGHYKKSSDSMIVRFIDLETN   89 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~----~~-~iy~~GG~~~~~~~~~~~~~~d~~t~   89 (469)
                      .+.++||.|++|..+|....+             +.....+ ...-.    +. +|..+...... .....+++|+..++
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~-------------~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~   80 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSR-------------RSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSN   80 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCc-------------ccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCC
Confidence            789999999999999865211             0001110 11111    12 34444332211 12346899999999


Q ss_pred             eEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEE-eeeCCCCCCCCC----CceEEEEc
Q 012184           90 LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-VEVTQTPPAPRY----DHSAALHA  164 (469)
Q Consensus        90 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~-~~~~g~~p~~r~----~~~~~~~~  164 (469)
                      .|+.+...  ++........+.+++.||.+.-..... ....|..||+.+.+|.. ++    +|..+.    ...++.. 
T Consensus        81 ~Wr~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~-  152 (230)
T TIGR01640        81 SWRTIECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINY-  152 (230)
T ss_pred             CccccccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee----cCccccccccceEEEEE-
Confidence            99998732  222122222677899999887433211 11269999999999995 53    233221    2344555 


Q ss_pred             CcEEEEEecCCCCcccCcEEEEE-CCCCceEeeeecCCCCCCCc----ceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLD-LQTNEWSQPEIKGDLVTGRA----GHAGITIDENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d-~~~~~W~~~~~~~~~p~~r~----~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      +++|.++...... ..-+||+++ -....|++.-.....+.+..    ....+..++.|++.... .  ...-+..||+.
T Consensus       153 ~G~L~~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~--~~~~~~~y~~~  228 (230)
T TIGR01640       153 KGKLAVLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-E--NPFYIFYYNVG  228 (230)
T ss_pred             CCEEEEEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-C--CceEEEEEecc
Confidence            5778877654221 124677775 33567998554321111111    12334456777776542 1  01137788887


Q ss_pred             CC
Q 012184          240 KL  241 (469)
Q Consensus       240 ~~  241 (469)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            63

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.43  E-value=0.11  Score=51.65  Aligned_cols=146  Identities=13%  Similarity=0.084  Sum_probs=82.2

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeec--CCCCCC---CCcceEEEEECCEEEEEeccCCCCCcc
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMET--SGKVPV---ARGGHSVTLVGSRLIIFGGEDRSRKLL  129 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~--~g~~p~---~r~~~~~~~~~~~lyi~GG~~~~~~~~  129 (469)
                      +-++.++.+|+..+ .      ..++.+|+.+++  |+.-..  .+....   .....+-++.++.+|+.+.       .
T Consensus       200 sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-------~  265 (394)
T PRK11138        200 APATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-------N  265 (394)
T ss_pred             CCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-------C
Confidence            33445677666433 1      238889988875  864321  010000   0112334456888887642       2


Q ss_pred             CcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCC
Q 012184          130 NDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG  205 (469)
Q Consensus       130 ~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~  205 (469)
                      ..++.+|+.+++  |+...  +.   +   ...+. .++.+|+....      ..++.+|+.+++  |....     ...
T Consensus       266 g~l~ald~~tG~~~W~~~~--~~---~---~~~~~-~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~-----~~~  325 (394)
T PRK11138        266 GNLVALDLRSGQIVWKREY--GS---V---NDFAV-DGGRIYLVDQN------DRVYALDTRGGVELWSQSD-----LLH  325 (394)
T ss_pred             CeEEEEECCCCCEEEeecC--CC---c---cCcEE-ECCEEEEEcCC------CeEEEEECCCCcEEEcccc-----cCC
Confidence            358999998875  87532  11   1   12233 37778886532      469999998764  86521     122


Q ss_pred             CcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          206 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       206 r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      +...+.+..++.+|+...      ...++.+|..+.+
T Consensus       326 ~~~~sp~v~~g~l~v~~~------~G~l~~ld~~tG~  356 (394)
T PRK11138        326 RLLTAPVLYNGYLVVGDS------EGYLHWINREDGR  356 (394)
T ss_pred             CcccCCEEECCEEEEEeC------CCEEEEEECCCCC
Confidence            333344556888877532      1257888887764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.34  E-value=0.12  Score=47.17  Aligned_cols=212  Identities=18%  Similarity=0.216  Sum_probs=116.4

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCee--eEEECCEEEEEccccCCCCCcceEEEEECCCCe-
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-   90 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-   90 (469)
                      .+..+|+.+++  |+.-..                 + +..+..  .+..++.+|+..+       ...+++||..+++ 
T Consensus         4 ~l~~~d~~tG~~~W~~~~~-----------------~-~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~   58 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLG-----------------P-GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV   58 (238)
T ss_dssp             EEEEEETTTTEEEEEEECS-----------------S-SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred             EEEEEECCCCCEEEEEECC-----------------C-CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence            68899998765  877331                 1 122222  4447899999832       2349999998887 


Q ss_pred             -EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcE
Q 012184           91 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRY  167 (469)
Q Consensus        91 -W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~  167 (469)
                       |+.-.     + .......+..++.+|+..+       .+.++.+|..+++  |+..... ..+.+........+.++.
T Consensus        59 ~W~~~~-----~-~~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~  124 (238)
T PF13360_consen   59 LWRFDL-----P-GPISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS-SPPAGVRSSSSPAVDGDR  124 (238)
T ss_dssp             EEEEEC-----S-SCGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S-SCTCSTB--SEEEEETTE
T ss_pred             EEEeec-----c-ccccceeeecccccccccc-------eeeeEecccCCcceeeeecccc-ccccccccccCceEecCE
Confidence             65543     1 1112224677888888752       2369999988764  8732211 112222222223333665


Q ss_pred             EEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCC-----CCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          168 LIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVT-----GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       168 l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~-----~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      +|+...      ...++.+|+++++  |......+....     .......+..++.+|+..+..      .+..+|..+
T Consensus       125 ~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~t  192 (238)
T PF13360_consen  125 LYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLAT  192 (238)
T ss_dssp             EEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTT
T ss_pred             EEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCC
Confidence            666543      2579999999876  776431111000     011223333457777775532      256679988


Q ss_pred             Cc--EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          241 LA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       241 ~~--W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      ..  |+. + ...          ........++.||+.. .    ...++.+|+.+.
T Consensus       193 g~~~w~~-~-~~~----------~~~~~~~~~~~l~~~~-~----~~~l~~~d~~tG  232 (238)
T PF13360_consen  193 GEKLWSK-P-ISG----------IYSLPSVDGGTLYVTS-S----DGRLYALDLKTG  232 (238)
T ss_dssp             TEEEEEE-C-SS-----------ECECEECCCTEEEEEE-T----TTEEEEEETTTT
T ss_pred             CCEEEEe-c-CCC----------ccCCceeeCCEEEEEe-C----CCEEEEEECCCC
Confidence            86  743 2 221          1111112256777666 2    246999998775

...

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.34  E-value=0.0015  Score=68.36  Aligned_cols=109  Identities=18%  Similarity=0.267  Sum_probs=74.3

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE  432 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e  432 (469)
                      ...|..+.+.+...+...++..++|+.++..+......+..+|++++++.++++.++..|.+.   .++..+.++.+|++
T Consensus       420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a---Rq~DKq~l~~LEkr  496 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA---RQQDKQSLQQLEKR  496 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            456666666677777777777777777777766666667777777777777777766666554   45556677778888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCceeEe
Q 012184          433 VQILRQQKSAFEQEMERATSVQTQGSGGVWRW  464 (469)
Q Consensus       433 ~~~~~q~~~~~~~~~~~~~~~q~q~~~~~~~~  464 (469)
                      +.+.+.+++.+|.+|.+++...++..+-..+.
T Consensus       497 L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~  528 (697)
T PF09726_consen  497 LAEERRQRASLEKQLQEERKARKEEEEKAARA  528 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Confidence            88888888888888775554444444444443

; GO: 0016021 integral to membrane

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=97.28  E-value=0.02  Score=53.40  Aligned_cols=114  Identities=11%  Similarity=0.070  Sum_probs=69.4

Q ss_pred             CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC--CCCCC
Q 012184           77 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT--QTPPA  153 (469)
Q Consensus        77 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~--g~~p~  153 (469)
                      .+..++.||+.+.+|..+..   -..+ .-..+... ++.||+.|-..........+-.||..+.+|..+...  ..+|.
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~---~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg   89 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGN---GISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG   89 (281)
T ss_pred             CCCEEEEEECCCCEeecCCC---CceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence            46779999999999999872   2111 11233333 567777775554442355688999999999888652  23455


Q ss_pred             CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeee
Q 012184          154 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  198 (469)
Q Consensus       154 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  198 (469)
                      |.........+...+++.|.. . ....-+..|  +..+|..+..
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~-~-~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRS-A-NGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             cEEEEEeeccCCceEEEecee-c-CCCceEEEE--cCCceEeccc
Confidence            543333333334467777765 2 112345555  4778998763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.28  E-value=0.14  Score=46.67  Aligned_cols=170  Identities=18%  Similarity=0.208  Sum_probs=97.2

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.||+.+++  |+.-...                   +.....+..++.||+..+.       +.++.+|..+++  |
T Consensus        47 ~l~~~d~~tG~~~W~~~~~~-------------------~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W  100 (238)
T PF13360_consen   47 NLYALDAKTGKVLWRFDLPG-------------------PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLW  100 (238)
T ss_dssp             EEEEEETTTSEEEEEEECSS-------------------CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEE
T ss_pred             EEEEEECCCCCEEEEeeccc-------------------cccceeeecccccccccce-------eeeEecccCCcceee
Confidence            78999998875  5554422                   1122246778999888621       159999988886  8


Q ss_pred             EE-eecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCC-------CceE
Q 012184           92 GV-METSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRY-------DHSA  160 (469)
Q Consensus        92 ~~-~~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~-------~~~~  160 (469)
                      +. ....  .+. .......+..++.+|+...       ...++.+|+.+++  |....   ..+....       ..+.
T Consensus       101 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~  168 (238)
T PF13360_consen  101 SIYLTSS--PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGS  168 (238)
T ss_dssp             EEEE-SS--CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEE
T ss_pred             eeccccc--cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccc
Confidence            84 4421  122 2333444445677776543       4569999999875  66543   1111111       1133


Q ss_pred             EEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184          161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  238 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~  238 (469)
                      .++.++.+|+..+..      .+..+|+.++.  |...      +.. ........++.+|+.. .     ...++.+|+
T Consensus       169 ~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~------~~~-~~~~~~~~~~~l~~~~-~-----~~~l~~~d~  229 (238)
T PF13360_consen  169 PVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP------ISG-IYSLPSVDGGTLYVTS-S-----DGRLYALDL  229 (238)
T ss_dssp             EECCTTEEEEECCTS------SEEEEETTTTEEEEEEC------SS--ECECEECCCTEEEEEE-T-----TTEEEEEET
T ss_pred             eEEECCEEEEEcCCC------eEEEEECCCCCEEEEec------CCC-ccCCceeeCCEEEEEe-C-----CCEEEEEEC
Confidence            334456788876543      25667999887  8442      111 1112344466777765 2     247899999


Q ss_pred             CCCc
Q 012184          239 TKLA  242 (469)
Q Consensus       239 ~~~~  242 (469)
                      .+++
T Consensus       230 ~tG~  233 (238)
T PF13360_consen  230 KTGK  233 (238)
T ss_dssp             TTTE
T ss_pred             CCCC
Confidence            8764

...

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.24  E-value=0.09  Score=50.95  Aligned_cols=128  Identities=19%  Similarity=0.240  Sum_probs=78.5

Q ss_pred             ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCcc----CcEEEE-
Q 012184           61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHFL-  135 (469)
Q Consensus        61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~----~~v~~~-  135 (469)
                      .+++|+..+..       ..+.+||+.|..-...+   .++.+...-.++.++++||++..........    ..++.+ 
T Consensus        75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~  144 (342)
T PF07893_consen   75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV  144 (342)
T ss_pred             cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence            49999999654       12789999999877666   4556666667788899999998764432110    033333 


Q ss_pred             -E--------CCCCeEEEeeeCCCCCCCCCC-------ceEEEEcCcEEEE-EecCCCCcccCcEEEEECCCCceEeeee
Q 012184          136 -D--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI  198 (469)
Q Consensus       136 -d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~~~~~l~v-~GG~~~~~~~~~i~~~d~~~~~W~~~~~  198 (469)
                       +        .....|..+++   +|..+..       .+-+++++..|+| .-|..     .-.|.||..+.+|+.+  
T Consensus       145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~--  214 (342)
T PF07893_consen  145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH--  214 (342)
T ss_pred             cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence             3        22346777652   3333221       1223334556666 32211     2489999999999996  


Q ss_pred             cCCCCCCCcce
Q 012184          199 KGDLVTGRAGH  209 (469)
Q Consensus       199 ~~~~p~~r~~~  209 (469)
                       |++..|-.+.
T Consensus       215 -GdW~LPF~G~  224 (342)
T PF07893_consen  215 -GDWMLPFHGQ  224 (342)
T ss_pred             -cceecCcCCc
Confidence             4665554443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.14  E-value=0.11  Score=51.54  Aligned_cols=155  Identities=17%  Similarity=0.115  Sum_probs=85.5

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC--CCC---CCCcceEEEEECCEEEEEeccCCCCCcc
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG--KVP---VARGGHSVTLVGSRLIIFGGEDRSRKLL  129 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g--~~p---~~r~~~~~~~~~~~lyi~GG~~~~~~~~  129 (469)
                      +.++.++.||+.+..       ..+++||..+++  |+.-....  ..+   .++...+.++.++++|+. +.      .
T Consensus        64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~-~~------~  129 (394)
T PRK11138         64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIG-SE------K  129 (394)
T ss_pred             ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEE-cC------C
Confidence            446679999998542       248999998776  87543210  000   123334456667888864 22      2


Q ss_pred             CcEEEEECCCC--eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCC
Q 012184          130 NDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG  205 (469)
Q Consensus       130 ~~v~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~  205 (469)
                      ..++.||..|+  .|+.-..     .+.. .+.++. ++.+|+..+      .+.++.||+.+++  |..... .+....
T Consensus       130 g~l~ald~~tG~~~W~~~~~-----~~~~-ssP~v~-~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~-~~~~~~  195 (394)
T PRK11138        130 GQVYALNAEDGEVAWQTKVA-----GEAL-SRPVVS-DGLVLVHTS------NGMLQALNESDGAVKWTVNLD-VPSLTL  195 (394)
T ss_pred             CEEEEEECCCCCCcccccCC-----Ccee-cCCEEE-CCEEEEECC------CCEEEEEEccCCCEeeeecCC-CCcccc
Confidence            35999998876  4865421     1111 112233 666776432      1469999998876  876431 111111


Q ss_pred             CcceEEEEECCEEEEEecCCCCCCcceEEEEECCCC--cEEE
Q 012184          206 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL--AWSI  245 (469)
Q Consensus       206 r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W~~  245 (469)
                      +...+-+..++.+|+..+      ...++.+|+.+.  .|..
T Consensus       196 ~~~~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        196 RGESAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             cCCCCCEEECCEEEEEcC------CCEEEEEEccCChhhhee
Confidence            222222334566555332      235778888765  4764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.00  E-value=0.39  Score=47.29  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             eEEEEECCCCe--EEEeecC--CCCCCC---CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCC
Q 012184           80 IVRFIDLETNL--CGVMETS--GKVPVA---RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQT  150 (469)
Q Consensus        80 ~~~~~d~~t~~--W~~~~~~--g~~p~~---r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~  150 (469)
                      .++.+|+.+++  |+.-...  +.....   ....+.+..++.+|+.+.       ...+++||+.+++  |..-.    
T Consensus       201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~----  269 (377)
T TIGR03300       201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA----  269 (377)
T ss_pred             EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc----
Confidence            38899998875  7643211  000000   112233445777777542       2359999998764  75431    


Q ss_pred             CCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184          151 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN  228 (469)
Q Consensus       151 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  228 (469)
                       + .  ..+.+ +.++++|+...      ...++++|..+++  |....     ...+...+.+..++.+|+...     
T Consensus       270 -~-~--~~~p~-~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~-----~~~~~~ssp~i~g~~l~~~~~-----  328 (377)
T TIGR03300       270 -S-S--YQGPA-VDDNRLYVTDA------DGVVVALDRRSGSELWKNDE-----LKYRQLTAPAVVGGYLVVGDF-----  328 (377)
T ss_pred             -C-C--ccCce-EeCCEEEEECC------CCeEEEEECCCCcEEEcccc-----ccCCccccCEEECCEEEEEeC-----
Confidence             1 1  11222 33677887642      2469999998764  76521     112222233445777776421     


Q ss_pred             CcceEEEEECCCCc
Q 012184          229 GCQETIVLNMTKLA  242 (469)
Q Consensus       229 ~~~d~~~~d~~~~~  242 (469)
                       ...++.+|..+.+
T Consensus       329 -~G~l~~~d~~tG~  341 (377)
T TIGR03300       329 -EGYLHWLSREDGS  341 (377)
T ss_pred             -CCEEEEEECCCCC
Confidence             2368888886553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.99  E-value=0.016  Score=48.19  Aligned_cols=14  Identities=29%  Similarity=0.586  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q 012184          431 NEVQILRQQKSAFE  444 (469)
Q Consensus       431 ~e~~~~~q~~~~~~  444 (469)
                      +.++.+.++..+.+
T Consensus       115 Rkv~~le~~~~~~E  128 (143)
T PF12718_consen  115 RKVKALEQERDQWE  128 (143)
T ss_pred             HHHHHHHhhHHHHH
Confidence            33333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.90  E-value=0.24  Score=45.51  Aligned_cols=190  Identities=15%  Similarity=0.127  Sum_probs=100.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .++++|+.++.-..+...                  ...+.++-.-++.+|+....   .     +..+|+.+++++.+.
T Consensus        23 ~i~~~~~~~~~~~~~~~~------------------~~~G~~~~~~~g~l~v~~~~---~-----~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen   23 RIYRVDPDTGEVEVIDLP------------------GPNGMAFDRPDGRLYVADSG---G-----IAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEEETTTTEEEEEESS------------------SEEEEEEECTTSEEEEEETT---C-----EEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEecC------------------CCceEEEEccCCEEEEEEcC---c-----eEEEecCCCcEEEEe
Confidence            688888888776665443                  12222222237888887532   1     566799999999887


Q ss_pred             cC--CCCCCCCcceEEEEECCEEEEEeccCCCCCcc--CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEE
Q 012184           96 TS--GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL--NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIV  170 (469)
Q Consensus        96 ~~--g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~--~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v  170 (469)
                      ..  +..+..+..-.++.-++.||+---........  ..++++++. .+...+..  .+..|   ..++...+ +.||+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~p---NGi~~s~dg~~lyv  150 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFP---NGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSE---EEEEEETTSSEEEE
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccccc---cceEECCcchheee
Confidence            43  11133444444444467777643221111112  579999998 66665542  11111   23344334 46777


Q ss_pred             EecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCC-cceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184          171 FGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGR-AGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       171 ~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r-~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~  246 (469)
                      .-     ...+.|+.|++....  +.........+... ..-.+++- +++|||..-     ....+++||+.-..-..+
T Consensus       151 ~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~~~i  220 (246)
T PF08450_consen  151 AD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLLREI  220 (246)
T ss_dssp             EE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEEEEE
T ss_pred             cc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEEEEE
Confidence            43     233669999986433  44322211222222 12234433 578888722     124799999996555554


Q ss_pred             c
Q 012184          247 T  247 (469)
Q Consensus       247 ~  247 (469)
                      .
T Consensus       221 ~  221 (246)
T PF08450_consen  221 E  221 (246)
T ss_dssp             E
T ss_pred             c
Confidence            3

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.88  E-value=0.04  Score=51.41  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=72.3

Q ss_pred             EEecc-CCCCC-ccCcEEEEECCCCeEEEeeeCCCCCCCCCC--ceEEEEcCcEEEEEecCCCCc-ccCcEEEEECCCCc
Q 012184          118 IFGGE-DRSRK-LLNDVHFLDLETMTWDAVEVTQTPPAPRYD--HSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNE  192 (469)
Q Consensus       118 i~GG~-~~~~~-~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~--~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~  192 (469)
                      ++||. ...+. .++.+-.||+.+.+|..+..   -   ..+  .++...+++.||+.|-..... ....+-.||+++.+
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            34553 33332 47789999999999988742   1   222  233334577788877544333 45668999999999


Q ss_pred             eEeeeec--CCCCCCCcceEEEEEC-CEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184          193 WSQPEIK--GDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       193 W~~~~~~--~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  248 (469)
                      |+.+...  ...|.|.........+ +.+++.|..  .....-+..|  ...+|..+..
T Consensus        76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             eeecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence            9887642  2345554322222223 356666654  2223445566  5668888765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.72  E-value=0.7  Score=45.51  Aligned_cols=209  Identities=15%  Similarity=0.100  Sum_probs=106.8

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.||+.+++  |+.-...                   +...+.++.++.+|+.+. .      ..++.||..+++  |
T Consensus        76 ~v~a~d~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~-~------g~l~ald~~tG~~~W  129 (377)
T TIGR03300        76 TVVALDAETGKRLWRVDLDE-------------------RLSGGVGADGGLVFVGTE-K------GEVIALDAEDGKELW  129 (377)
T ss_pred             eEEEEEccCCcEeeeecCCC-------------------CcccceEEcCCEEEEEcC-C------CEEEEEECCCCcEee
Confidence            68999988765  7643332                   111223445777776432 2      249999998776  8


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLI  169 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~  169 (469)
                      +.... +    . ...+.+..++.+|+..+       ...++.+|+.+++  |+..... +....+...+.+.. ++.+|
T Consensus       130 ~~~~~-~----~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~-~~~v~  194 (377)
T TIGR03300       130 RAKLS-S----E-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIA-DGGVL  194 (377)
T ss_pred             eeccC-c----e-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEE-CCEEE
Confidence            75431 1    1 11223345677776432       2348999998764  7654311 10011222233444 55444


Q ss_pred             EEecCCCCcccCcEEEEECCCCc--eEeeeecC--CCCCCC---cceEEEEECCEEEEEecCCCCCCcceEEEEECCCC-
Q 012184          170 VFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL-  241 (469)
Q Consensus       170 v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~-  241 (469)
                       +|..+     ..++.+|+.+++  |+.....+  .....|   ...+.+..++.+|+...      ...++.||+.+. 
T Consensus       195 -~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~  262 (377)
T TIGR03300       195 -VGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGR  262 (377)
T ss_pred             -EECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCc
Confidence             44322     368899988764  76422100  000001   11223345677777543      136889998764 


Q ss_pred             -cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          242 -AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       242 -~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                       .|..-  ...       ..+....    ++.+|+...     ...++.+|..+.
T Consensus       263 ~~W~~~--~~~-------~~~p~~~----~~~vyv~~~-----~G~l~~~d~~tG  299 (377)
T TIGR03300       263 VLWKRD--ASS-------YQGPAVD----DNRLYVTDA-----DGVVVALDRRSG  299 (377)
T ss_pred             EEEeec--cCC-------ccCceEe----CCEEEEECC-----CCeEEEEECCCC
Confidence             46542  111       0111122    567776542     235888887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.71  E-value=0.19  Score=48.70  Aligned_cols=151  Identities=16%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecC--CCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      .--|++.+|.+..-    .+|..|-.++.  .+...  -..|...  ...+. ++. ..+++|..      .-+|.||+.
T Consensus       224 ~~plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fPi~~--a~f~p-~G~~~i~~s~rr------ky~ysyDle  288 (514)
T KOG2055|consen  224 TAPLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFPIQK--AEFAP-NGHSVIFTSGRR------KYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCCCcE----EEEEecCccCh--hheeeeeccCccce--eeecC-CCceEEEecccc------eEEEEeecc
Confidence            55688888876532    26666666655  22210  0122221  11111 344 66666643      348999999


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  218 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  218 (469)
                      +.+-+++.+...++. ++.+...+-.++.++++-|..+     -|+++...|+.|..--   .++.....++....+..|
T Consensus       289 ~ak~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~---KieG~v~~~~fsSdsk~l  359 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSF---KIEGVVSDFTFSSDSKEL  359 (514)
T ss_pred             ccccccccCCCCccc-chhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhee---eeccEEeeEEEecCCcEE
Confidence            999998876555542 2222222222444666666543     4788888888886411   122222233333334567


Q ss_pred             EEEecCCCCCCcceEEEEECCCCc
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      +++||.      ..+|++|+.++.
T Consensus       360 ~~~~~~------GeV~v~nl~~~~  377 (514)
T KOG2055|consen  360 LASGGT------GEVYVWNLRQNS  377 (514)
T ss_pred             EEEcCC------ceEEEEecCCcc
Confidence            788773      489999998874

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.68  E-value=0.14  Score=46.88  Aligned_cols=154  Identities=18%  Similarity=0.118  Sum_probs=93.6

Q ss_pred             ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      .++.+|..-|..+.    +.+..+|+.|++-....   ++|..-.+=+++.++++||.+-      .-.+..++||+.+.
T Consensus        54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~~tl  120 (264)
T PF05096_consen   54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLT------WKEGTGFVYDPNTL  120 (264)
T ss_dssp             ETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEE------SSSSEEEEEETTTT
T ss_pred             CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEE------ecCCeEEEEccccc
Confidence            46788887776543    45999999999876655   6788888999999999999983      12456899999875


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE-eeeec-CCCCCCCcceEEEEECCEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS-QPEIK-GDLVTGRAGHAGITIDENW  218 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~-~~~~~-~~~p~~r~~~~~~~~~~~l  218 (469)
                      +=  +.   ..+.+.-+-.++.. +..||+.-|.      +.++.+||.+.+=. .+.++ ...|..+- -.+-.+++.|
T Consensus       121 ~~--~~---~~~y~~EGWGLt~d-g~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE~i~G~I  187 (264)
T PF05096_consen  121 KK--IG---TFPYPGEGWGLTSD-GKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELEYINGKI  187 (264)
T ss_dssp             EE--EE---EEE-SSS--EEEEC-SSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---E-EEEEEETTEE
T ss_pred             eE--EE---EEecCCcceEEEcC-CCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCCc-EeEEEEcCEE
Confidence            43  22   23445677788865 5568887763      67999999865432 22222 12233322 2445556665


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      |.     +--..+.|.+.|+.++.-..
T Consensus       188 yA-----NVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  188 YA-----NVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             EE-----EETTSSEEEEEETTT-BEEE
T ss_pred             EE-----EeCCCCeEEEEeCCCCeEEE
Confidence            53     22235678999999987544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.66  E-value=0.064  Score=51.79  Aligned_cols=110  Identities=19%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      |....+++|+..      -+|.||+.+.+-.++....-++..-...--+...+.++++-|..+      -|+++...|+.
T Consensus       269 G~~~i~~s~rrk------y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~e  336 (514)
T KOG2055|consen  269 GHSVIFTSGRRK------YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKE  336 (514)
T ss_pred             CceEEEecccce------EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhh
Confidence            443777777532      389999999999888743333322222223333444555555433      38888888888


Q ss_pred             EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184          142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  193 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  193 (469)
                      |..--   .++-....++.... ...|++.||.      ..||++|+.++..
T Consensus       337 li~s~---KieG~v~~~~fsSd-sk~l~~~~~~------GeV~v~nl~~~~~  378 (514)
T KOG2055|consen  337 LITSF---KIEGVVSDFTFSSD-SKELLASGGT------GEVYVWNLRQNSC  378 (514)
T ss_pred             hhhee---eeccEEeeEEEecC-CcEEEEEcCC------ceEEEEecCCcce
Confidence            85321   22333334444433 4568888875      3799999988753

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=96.52  E-value=0.58  Score=42.99  Aligned_cols=189  Identities=15%  Similarity=0.062  Sum_probs=104.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEEC-----CCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDL-----ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD  136 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~-----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d  136 (469)
                      .++||++.|....     .++.|..     ..+.....-   .+|.+-.|.+.+++++.+|.--.      .++.|.+||
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd   95 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD   95 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence            5678888776543     3555532     222333332   46677778888889999998633      377899999


Q ss_pred             CCCCeEE-EeeeCCCC-----CCCCC---CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC----ceEeeeecCCCC
Q 012184          137 LETMTWD-AVEVTQTP-----PAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN----EWSQPEIKGDLV  203 (469)
Q Consensus       137 ~~t~~W~-~~~~~g~~-----p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~----~W~~~~~~~~~p  203 (469)
                      +.+..-. .....+..     |....   ..-.++..++ |+|+=....+...--+-.+|+.+.    +|..     ..+
T Consensus        96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~  169 (250)
T PF02191_consen   96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP  169 (250)
T ss_pred             CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence            9998765 33221111     11111   1233444345 777654433221123455666654    3553     334


Q ss_pred             CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEe
Q 012184          204 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFG  277 (469)
Q Consensus       204 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~G  277 (469)
                      .+..+ .+.++-+.||++-..+... ..-.+.||+.++.=..+ .++-+.    .......+..++ +..||+.-
T Consensus       170 k~~~~-naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~-~i~f~~----~~~~~~~l~YNP~dk~LY~wd  237 (250)
T PF02191_consen  170 KRSAG-NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDV-SIPFPN----PYGNISMLSYNPRDKKLYAWD  237 (250)
T ss_pred             chhhc-ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceece-eeeecc----ccCceEeeeECCCCCeEEEEE
Confidence            44444 3455667999987654433 33468999988765432 222222    122344455566 67888764

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.46  E-value=0.05  Score=55.77  Aligned_cols=31  Identities=16%  Similarity=0.197  Sum_probs=16.9

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhh
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDE  383 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  383 (469)
                      +.+|..+++.+++.....+.+.++.+++-++
T Consensus       326 qaELerRRq~leeqqqreree~eqkEreE~e  356 (1118)
T KOG1029|consen  326 QAELERRRQALEEQQQREREEVEQKEREEEE  356 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666665555555555555444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.44  E-value=0.024  Score=59.68  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=8.5

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQE  446 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~  446 (469)
                      ++|.|+.+++.++.+.|++
T Consensus       549 ~lE~E~~~lr~elk~kee~  567 (697)
T PF09726_consen  549 QLESELKKLRRELKQKEEQ  567 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

; GO: 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.38  E-value=0.048  Score=45.33  Aligned_cols=16  Identities=13%  Similarity=0.347  Sum_probs=6.6

Q ss_pred             hHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAF  443 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~  443 (469)
                      .+.+.++.+.+++++.
T Consensus        77 ~l~rriq~LEeele~a   92 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEA   92 (143)
T ss_pred             HHHhhHHHHHHHHHHH
Confidence            3444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.33  E-value=0.21  Score=48.44  Aligned_cols=31  Identities=13%  Similarity=0.301  Sum_probs=19.8

Q ss_pred             CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe
Q 012184           55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL   90 (469)
Q Consensus        55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~   90 (469)
                      -++.+..+.-.|++||.-...     +|.+.+.|+.
T Consensus        84 v~al~s~n~G~~l~ag~i~g~-----lYlWelssG~  114 (476)
T KOG0646|consen   84 VHALASSNLGYFLLAGTISGN-----LYLWELSSGI  114 (476)
T ss_pred             eeeeecCCCceEEEeecccCc-----EEEEEecccc
Confidence            345555566678887743333     7887777775

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.27  E-value=1.7  Score=44.85  Aligned_cols=124  Identities=12%  Similarity=0.022  Sum_probs=67.0

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC-C-CC---CCCcceEEEEECCEEEEEeccCCCCCcc
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-K-VP---VARGGHSVTLVGSRLIIFGGEDRSRKLL  129 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g-~-~p---~~r~~~~~~~~~~~lyi~GG~~~~~~~~  129 (469)
                      +-+++++.||+....       ..++.+|..|++  |+.-.... . .+   ......+.+..+++||+- ..      .
T Consensus        64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~-t~------d  129 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFG-TL------D  129 (527)
T ss_pred             CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEE-cC------C
Confidence            445679999986432       239999999876  87644110 0 01   011123345567777763 21      3


Q ss_pred             CcEEEEECCCCe--EEEeeeCCCCCCCC-CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeee
Q 012184          130 NDVHFLDLETMT--WDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPE  197 (469)
Q Consensus       130 ~~v~~~d~~t~~--W~~~~~~g~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~  197 (469)
                      ..++.+|..|++  |+.-.  +...... ...+-++. ++.+|+-...........++.||.++++  |..-.
T Consensus       130 g~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       130 ARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEECCCCCEEeeccc--ccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            359999998875  76532  1111111 11122334 6656553222112234579999998876  87543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.23  E-value=1.5  Score=43.78  Aligned_cols=147  Identities=13%  Similarity=0.038  Sum_probs=77.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .++++|+.++.-..+....                ......+....+..|++......    ...+|.+|+.++....+.
T Consensus       215 ~i~v~d~~~g~~~~~~~~~----------------~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~  274 (417)
T TIGR02800       215 EIYVQDLATGQREKVASFP----------------GMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLT  274 (417)
T ss_pred             EEEEEECCCCCEEEeecCC----------------CCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECC
Confidence            6888888887665554431                11112222222455666533221    235999999998877775


Q ss_pred             cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184           96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      ..   +....... ..-++ +|++......    ...+|++|+.+..+..+...+     ..........++..+++...
T Consensus       275 ~~---~~~~~~~~-~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       275 NG---PGIDTEPS-WSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             CC---CCCCCCEE-ECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEc
Confidence            32   11111111 11234 4554432221    347999999998887765322     12222333334555555544


Q ss_pred             CCCcccCcEEEEECCCCceEeee
Q 012184          175 SHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       175 ~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      ..  ....++++|+.+..+..+.
T Consensus       342 ~~--~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       342 EG--GGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             cC--CceEEEEEeCCCCCeEEcc
Confidence            32  2347999999887666553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.16  E-value=1.7  Score=43.75  Aligned_cols=184  Identities=15%  Similarity=0.089  Sum_probs=92.6

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      ..++.+|+.++.-..+.   ..+..........-+.+|++....++    ..+++++|+.++....+...   + . ...
T Consensus       228 ~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~~~  295 (433)
T PRK04922        228 SAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-G-IDT  295 (433)
T ss_pred             cEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-C-Ccc
Confidence            45999999998877665   22211111111111335554432221    34799999999887665421   1 1 111


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C-CEEEEEecCCCCCCcceEEEE
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      ......|+.-++|.....  ....+|++|+.+.....+...+     ......... + +.|++..+. +  ....++++
T Consensus       296 ~~~~spDG~~l~f~sd~~--g~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~--~~~~I~v~  365 (433)
T PRK04922        296 EPTWAPDGKSIYFTSDRG--GRPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G--GQYRIAVM  365 (433)
T ss_pred             ceEECCCCCEEEEEECCC--CCceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-C--CceeEEEE
Confidence            222223443344432111  1257999999888887764221     122222222 3 445554332 1  22478999


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      |+.+.....+..-...       .+ ..+  .+++..+++....+ ....++.++++..
T Consensus       366 d~~~g~~~~Lt~~~~~-------~~-p~~--spdG~~i~~~s~~~-g~~~L~~~~~~g~  413 (433)
T PRK04922        366 DLSTGSVRTLTPGSLD-------ES-PSF--APNGSMVLYATREG-GRGVLAAVSTDGR  413 (433)
T ss_pred             ECCCCCeEECCCCCCC-------CC-ceE--CCCCCEEEEEEecC-CceEEEEEECCCC
Confidence            9988887766432110       11 122  23445555544332 2456888888543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.11  E-value=1.8  Score=43.53  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=77.0

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      ..+|++|+.++.-..+..   .+.. .......-+ .+|++....++    ..++|++|+.+.....+...   + .. .
T Consensus       223 ~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~  289 (430)
T PRK00178        223 PRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D  289 (430)
T ss_pred             CEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence            359999999998777652   1211 111111113 34554322211    35799999999988776421   1 11 1


Q ss_pred             ceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC-EEEEEecCCCCCCcceEEE
Q 012184          158 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNNGCQETIV  235 (469)
Q Consensus       158 ~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~d~~~  235 (469)
                      .......| +.|++.....+   ...+|.+|+.++.+..+...+    .........-++ .+++.....+   ..++++
T Consensus       290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~  359 (430)
T PRK00178        290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG---NFHVAA  359 (430)
T ss_pred             CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC---ceEEEE
Confidence            11222223 44554432221   257999999988887764211    111111112233 4444432211   346999


Q ss_pred             EECCCCcEEEecc
Q 012184          236 LNMTKLAWSILTS  248 (469)
Q Consensus       236 ~d~~~~~W~~~~~  248 (469)
                      +|+.+...+.+..
T Consensus       360 ~dl~tg~~~~lt~  372 (430)
T PRK00178        360 QDLQRGSVRILTD  372 (430)
T ss_pred             EECCCCCEEEccC
Confidence            9999988877754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.11  E-value=1.2  Score=41.61  Aligned_cols=148  Identities=22%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      +..+|+.++.      .+.+..||+.++........+  +.+   ..++.. + +.+|+.++.      .+.+.+||+.+
T Consensus        42 g~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~  104 (300)
T TIGR03866        42 GKLLYVCASD------SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVTVIDIET  104 (300)
T ss_pred             CCEEEEEECC------CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCC
Confidence            4456777642      234889999988765432111  111   122222 3 356655432      23589999987


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  219 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  219 (469)
                      ..-....     +.....+.+....++.+++++..+.    +.++.||+.+..-......+.    +..+.+..-++..+
T Consensus       105 ~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l  171 (300)
T TIGR03866       105 RKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKEL  171 (300)
T ss_pred             CeEEeEe-----eCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEE
Confidence            6532211     1111123344444566666664322    346677876654322111111    11122222244545


Q ss_pred             EEecCCCCCCcceEEEEECCCCcE
Q 012184          220 IVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       220 v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      ++++..    ...+.+||+.+...
T Consensus       172 ~~~~~~----~~~v~i~d~~~~~~  191 (300)
T TIGR03866       172 WVSSEI----GGTVSVIDVATRKV  191 (300)
T ss_pred             EEEcCC----CCEEEEEEcCccee
Confidence            454421    13588899887643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.10  E-value=1.9  Score=43.69  Aligned_cols=149  Identities=15%  Similarity=0.135  Sum_probs=78.6

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      ..+|.+|+.++.-..+.   ..+..........-+..|++....+.    ..++|++|+.++..+.+....    .....
T Consensus       242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~~~~~  310 (448)
T PRK04792        242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----AIDTE  310 (448)
T ss_pred             cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----CCccc
Confidence            45999999988776665   22211111111112345665533221    357999999999887765311    11111


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  238 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~  238 (469)
                      ....-++++|++......   ...+|++|+.++++..+...+..    .......-+++.+++.+..  .....++.+|+
T Consensus       311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~--~g~~~I~~~dl  381 (448)
T PRK04792        311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRT--NGKFNIARQDL  381 (448)
T ss_pred             eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEec--CCceEEEEEEC
Confidence            112222344544432222   25799999999988877422111    1111122244444443322  12357999999


Q ss_pred             CCCcEEEec
Q 012184          239 TKLAWSILT  247 (469)
Q Consensus       239 ~~~~W~~~~  247 (469)
                      .+.....+.
T Consensus       382 ~~g~~~~lt  390 (448)
T PRK04792        382 ETGAMQVLT  390 (448)
T ss_pred             CCCCeEEcc
Confidence            988877664

>cd00094 HX Hemopexin-like repeats

Probab=96.03  E-value=0.67  Score=40.91  Aligned_cols=156  Identities=11%  Similarity=0.100  Sum_probs=78.9

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeE--EEeecCC-CCCCCCcceEEEEEC-CEEEEEeccCCCCCccCc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETSG-KVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~g-~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~  131 (469)
                      -+++...+.+|+|-|.        .+|+++......  ..+...- ..| .....+...-. +++|+|-|.        .
T Consensus        10 DA~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg~--------~   72 (194)
T cd00094          10 DAVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKGD--------K   72 (194)
T ss_pred             CeEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECCC--------E
Confidence            3455557999999663        278887652221  1221100 112 22222222223 789999543        4


Q ss_pred             EEEEECCCCeEEEeee---CCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEee--eec-CCCC-
Q 012184          132 VHFLDLETMTWDAVEV---TQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP--EIK-GDLV-  203 (469)
Q Consensus       132 v~~~d~~t~~W~~~~~---~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~--~~~-~~~p-  203 (469)
                      .|+|+..+..+..+..   .+-++.+..--++.... ++++|+|.|       +..|+||..+.+...-  ... ...+ 
T Consensus        73 yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g  145 (194)
T cd00094          73 YWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPG  145 (194)
T ss_pred             EEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCC
Confidence            7778765422211111   01111112122333343 678999988       5688998766554311  000 0111 


Q ss_pred             CCCcceEEEEEC-CEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          204 TGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       204 ~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      .+..-.++...+ +++|+|-|       +..|+||..+..
T Consensus       146 ~p~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~  178 (194)
T cd00094         146 VPDKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE  178 (194)
T ss_pred             cCCCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence            222222333344 88999977       378999988765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.00  E-value=0.11  Score=52.31  Aligned_cols=45  Identities=29%  Similarity=0.429  Sum_probs=18.9

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      +..+|+.+.+++....+.+..+...+..++.+.+.++.+++..+.
T Consensus       186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~  230 (546)
T PF07888_consen  186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK  230 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333444444444444444444444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.89  E-value=2.2  Score=43.20  Aligned_cols=153  Identities=10%  Similarity=0.051  Sum_probs=77.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      +..|++.....+    ...+|.+|+.++....+...   ...... ..-.-++ .|++.....    ....+|++|+.++
T Consensus       273 G~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~~~~~~-p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g  340 (448)
T PRK04792        273 GKKLALVLSKDG----QPEIYVVDIATKALTRITRH---RAIDTE-PSWHPDGKSLIFTSERG----GKPQIYRVNLASG  340 (448)
T ss_pred             CCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---CCCccc-eEECCCCCEEEEEECCC----CCceEEEEECCCC
Confidence            555666533221    24699999999988877632   111111 1111233 455443222    1357999999999


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  219 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  219 (469)
                      ++..+...+..     ........| ++|++.+ ....  ...++++|+.+.....+...   .... ..+.. -++..+
T Consensus       341 ~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~~-~~~g--~~~I~~~dl~~g~~~~lt~~---~~d~-~ps~s-pdG~~I  407 (448)
T PRK04792        341 KVSRLTFEGEQ-----NLGGSITPDGRSMIMVN-RTNG--KFNIARQDLETGAMQVLTST---RLDE-SPSVA-PNGTMV  407 (448)
T ss_pred             CEEEEecCCCC-----CcCeeECCCCCEEEEEE-ecCC--ceEEEEEECCCCCeEEccCC---CCCC-CceEC-CCCCEE
Confidence            98887532211     111222224 4455443 3221  24689999998887765421   1111 11222 244444


Q ss_pred             EEecCCCCCCcceEEEEECCCC
Q 012184          220 IVGGGDNNNGCQETIVLNMTKL  241 (469)
Q Consensus       220 v~GG~~~~~~~~d~~~~d~~~~  241 (469)
                      ++....+  ....++++|....
T Consensus       408 ~~~~~~~--g~~~l~~~~~~G~  427 (448)
T PRK04792        408 IYSTTYQ--GKQVLAAVSIDGR  427 (448)
T ss_pred             EEEEecC--CceEEEEEECCCC
Confidence            4433221  2346788887433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.86  E-value=2.3  Score=42.61  Aligned_cols=192  Identities=9%  Similarity=0.017  Sum_probs=101.4

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcC-eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSD-HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .++++|+.+++=+.+....                 .... ......+.+|++.-...+    ..++|.+|..++.++++
T Consensus       214 ~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~L  272 (419)
T PRK04043        214 TLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQI  272 (419)
T ss_pred             EEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEc
Confidence            6888888777666655431                 1111 111122445655533221    34699999999999888


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184           95 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      ..   .+..-.......-+.+||+.-...    -...+|++|+.++..+.+...|.     ... ...-++++|.+....
T Consensus       273 T~---~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        273 TN---YPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRE  339 (419)
T ss_pred             cc---CCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcC
Confidence            62   221111111111234677664332    24579999999999877764322     222 222223444444332


Q ss_pred             CCCc---ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184          175 SHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       175 ~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  248 (469)
                      ....   ...+++++|+.++.+..+...+     ...+-...-+++.++|-...  +....++.+++..+.=..++.
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~  409 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPL  409 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeec
Confidence            2111   2358999999999988875321     11111111244444443222  234578888887765455543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.85  E-value=2.4  Score=42.77  Aligned_cols=188  Identities=16%  Similarity=0.079  Sum_probs=90.9

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      ..++.+|+.++....+.   ..+..........-+..|++....+.    ..++|++|+.+.....+...   +. .. .
T Consensus       226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~-~~-~  293 (435)
T PRK05137        226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA-ID-T  293 (435)
T ss_pred             CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC-cc-C
Confidence            45999999999887776   22222111111112334554432221    45799999998887666421   11 11 1


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC-EEEEEecCCCCCCcceEEEEE
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      ......|+.-++|.....  ....+|++|+.+.....+...    ..+.......-++ .|++... ..  ....++++|
T Consensus       294 ~~~~spDG~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~-~~--~~~~i~~~d  364 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRS--GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQ-GG--GQFSIGVMK  364 (435)
T ss_pred             ceeEcCCCCEEEEEECCC--CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEc-CC--CceEEEEEE
Confidence            112222443333432211  125799999988777666421    1111111111234 4444332 11  134788999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEecc-CCCC-CceEEEEECCCCCC
Q 012184          238 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY-NGKY-NNEVFVMRLKPRDI  297 (469)
Q Consensus       238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~-~~~~-~~~~~~~d~~~~~w  297 (469)
                      +.......+... ..       .....+.  +++..+++-.. .+.. ...+|.+|++...-
T Consensus       365 ~~~~~~~~lt~~-~~-------~~~p~~s--pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        365 PDGSGERILTSG-FL-------VEGPTWA--PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CCCCceEeccCC-CC-------CCCCeEC--CCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            877665554321 10       1111222  23344444332 2221 25799999866533

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.81  E-value=0.2  Score=44.10  Aligned_cols=47  Identities=28%  Similarity=0.409  Sum_probs=18.5

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL  419 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~  419 (469)
                      +..++++.+.+.+..+..++......+..++..++++..++....++
T Consensus        96 el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  142 (191)
T PF04156_consen   96 ELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKEL  142 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444443333333333333333334444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=0.11  Score=53.44  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=25.5

Q ss_pred             hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      ..++++++......-...++.++++++++.++++.++-.+-+++..++.+.|
T Consensus       469 t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q  520 (1118)
T KOG1029|consen  469 TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ  520 (1118)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence            3333444443333333444555555565555555555555555555544444

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.081  Score=53.12  Aligned_cols=81  Identities=14%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-------ELQKMLESSQTIENEVQILRQQKSAFEQ  445 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~-------e~~~~l~~~~~~e~e~~~~~q~~~~~~~  445 (469)
                      +...+...++.+++++++++.++.+++.++.+++.++..+.+.+.       |++.....+..|++++++.....++++.
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~  502 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER  502 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555544433       3444445555677777777777777777


Q ss_pred             HHHHhhhh
Q 012184          446 EMERATSV  453 (469)
Q Consensus       446 ~~~~~~~~  453 (469)
                      .++++.+.
T Consensus       503 ~l~~l~k~  510 (652)
T COG2433         503 KLAELRKM  510 (652)
T ss_pred             HHHHHHHH
Confidence            77655533

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.70  E-value=0.32  Score=44.51  Aligned_cols=139  Identities=20%  Similarity=0.137  Sum_probs=82.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+..||+.+++=......                |...++-.++.++++||..-      ......+.||+.+.+  .+.
T Consensus        69 ~l~~~d~~tg~~~~~~~l----------------~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~~tl~--~~~  124 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSVPL----------------PPRYFGEGITILGDKLYQLT------WKEGTGFVYDPNTLK--KIG  124 (264)
T ss_dssp             EEEEEETTTSSEEEEEE-----------------TTT--EEEEEEETTEEEEEE------SSSSEEEEEETTTTE--EEE
T ss_pred             EEEEEECCCCcEEEEEEC----------------CccccceeEEEECCEEEEEE------ecCCeEEEEccccce--EEE
Confidence            889999999987766666                56678889999999999982      234458999998764  333


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEE-EeeeCC-CCCCCCCCceEEEEcCcEEEEEec
Q 012184           96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQ-TPPAPRYDHSAALHANRYLIVFGG  173 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~-~~~~~g-~~p~~r~~~~~~~~~~~~l~v~GG  173 (469)
                         ..+.+..|.+++..+..|++--|       ++.++.+||.+.+=. .+.++. ..|..+ ---+-.+ +++||.   
T Consensus       125 ---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i-~G~IyA---  189 (264)
T PF05096_consen  125 ---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYI-NGKIYA---  189 (264)
T ss_dssp             ---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEE-TTEEEE---
T ss_pred             ---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCC-cEeEEEE-cCEEEE---
Confidence               33445689999977778888655       567999999876432 222211 111111 0011112 444443   


Q ss_pred             CCCCcccCcEEEEECCCCceEe
Q 012184          174 CSHSIFFNDLHVLDLQTNEWSQ  195 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~W~~  195 (469)
                        +--..+.|.+.||.++.-..
T Consensus       190 --NVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  190 --NVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             --EETTSSEEEEEETTT-BEEE
T ss_pred             --EeCCCCeEEEEeCCCCeEEE
Confidence              11235779999999987443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.64  E-value=0.2  Score=49.85  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccc--CCCceeE
Q 012184          429 IENEVQILRQQKSAFEQEMERATSVQTQ--GSGGVWR  463 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~~~~~~~~~~q~q--~~~~~~~  463 (469)
                      |..++..+.+.-.++.++...+....+-  +..|.||
T Consensus       170 L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG  206 (475)
T PRK10361        170 LAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG  206 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence            4455555555555666665556555553  5678886

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.63  E-value=2.1  Score=43.84  Aligned_cols=112  Identities=14%  Similarity=0.096  Sum_probs=56.9

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEEC-CEEEEEccccCCCCCcceEEEEECCCCe--
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNL--   90 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iy~~GG~~~~~~~~~~~~~~d~~t~~--   90 (469)
                      .++.+|+.+++  |+.-......     .    .. + +-....+++.+ +.||+...       ...++.+|..|++  
T Consensus        72 ~l~AlD~~tG~~~W~~~~~~~~~-----~----~~-~-~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~  133 (488)
T cd00216          72 ALFALDAATGKVLWRYDPKLPAD-----R----GC-C-DVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQV  133 (488)
T ss_pred             cEEEEECCCChhhceeCCCCCcc-----c----cc-c-ccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEe
Confidence            78899998765  8764432100     0    00 1 11112234446 78887532       1249999998876  


Q ss_pred             EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC---CccCcEEEEECCCCe--EEEee
Q 012184           91 CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMT--WDAVE  146 (469)
Q Consensus        91 W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~---~~~~~v~~~d~~t~~--W~~~~  146 (469)
                      |+.-......+......+.++.++.+| +|..+...   .....++.||..|++  |+.-.
T Consensus       134 W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         134 WKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             eeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            876541100000011223344455554 55332211   134579999998764  86543

The alignment model contains an 8-bladed beta-propeller.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.58  E-value=3  Score=42.02  Aligned_cols=188  Identities=9%  Similarity=0.014  Sum_probs=93.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .++.+|+.+++-..+....                ..-...+....+.+|++.....+    ...++.+|+.++....+.
T Consensus       229 ~l~~~dl~~g~~~~l~~~~----------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt  288 (433)
T PRK04922        229 AIYVQDLATGQRELVASFR----------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLT  288 (433)
T ss_pred             EEEEEECCCCCEEEeccCC----------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECc
Confidence            5777888777766554431                11111111122455655432221    235999999998876665


Q ss_pred             cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEE-EcCcEEEEEec
Q 012184           96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVFGG  173 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~GG  173 (469)
                      ..   +...... ...-++ +|++.....    ....+|.+|+.++....+...+     .+...... -++++|++..+
T Consensus       289 ~~---~~~~~~~-~~spDG~~l~f~sd~~----g~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        289 NH---FGIDTEP-TWAPDGKSIYFTSDRG----GRPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             cC---CCCccce-EECCCCCEEEEEECCC----CCceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC
Confidence            21   1111111 111234 444433222    1346999999988887775322     12222222 22445555443


Q ss_pred             CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184          174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~  246 (469)
                      .+.   ...++++|+.++....+.. +  +. -... ...-+++.+++....  .....++.+|+....=..+
T Consensus       356 ~~~---~~~I~v~d~~~g~~~~Lt~-~--~~-~~~p-~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        356 SGG---QYRIAVMDLSTGSVRTLTP-G--SL-DESP-SFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             CCC---ceeEEEEECCCCCeEECCC-C--CC-CCCc-eECCCCCEEEEEEec--CCceEEEEEECCCCceEEc
Confidence            221   2379999998888776542 1  11 1111 122245555554332  2235788888866543334

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.52  E-value=3.1  Score=41.80  Aligned_cols=143  Identities=8%  Similarity=0.006  Sum_probs=73.7

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      ..+|.+|+.++....+..   .+..-.......-+..|++.....    ....+|.+|+.++.+..+...+    .....
T Consensus       267 ~~Iy~~d~~~~~~~~lt~---~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~----~~~~~  335 (430)
T PRK00178        267 PEIYVMDLASRQLSRVTN---HPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG----NYNAR  335 (430)
T ss_pred             ceEEEEECCCCCeEEccc---CCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC----CCccc
Confidence            469999999998887752   111111111111133555543221    2357999999999888775322    11111


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  238 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~  238 (469)
                      ....-+++.|++....+.   ...++++|+.++....+...+   .. ... ...-+++.+++.....  ....++..++
T Consensus       336 ~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt~~~---~~-~~p-~~spdg~~i~~~~~~~--g~~~l~~~~~  405 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILTDTS---LD-ESP-SVAPNGTMLIYATRQQ--GRGVLMLVSI  405 (430)
T ss_pred             eEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEccCCC---CC-CCc-eECCCCCEEEEEEecC--CceEEEEEEC
Confidence            122222445555443221   246999999998877764211   11 111 1222556655543222  2345778877


Q ss_pred             CCCc
Q 012184          239 TKLA  242 (469)
Q Consensus       239 ~~~~  242 (469)
                      ....
T Consensus       406 ~g~~  409 (430)
T PRK00178        406 NGRV  409 (430)
T ss_pred             CCCc
Confidence            5443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.48  E-value=0.2  Score=50.07  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=25.9

Q ss_pred             hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      ..+..+....+++.+.+.+...+..+..|++.++.+++.++.....|+.++
T Consensus       274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444555555555555555555555555555555544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.48  E-value=0.15  Score=51.41  Aligned_cols=41  Identities=15%  Similarity=0.290  Sum_probs=15.5

Q ss_pred             HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH
Q 012184          354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  394 (469)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e  394 (469)
                      +..+.++.++.........+...++.+++.++..+...+++
T Consensus       146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee  186 (546)
T PF07888_consen  146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEE  186 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444443333333333333444444443333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.46  E-value=3.3  Score=41.72  Aligned_cols=192  Identities=7%  Similarity=-0.033  Sum_probs=94.9

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .++.+|+.+++...+....                ..-...+....|..|++.....+    ...+|.+|+.++....+.
T Consensus       227 ~i~~~dl~~g~~~~l~~~~----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt  286 (435)
T PRK05137        227 RVYLLDLETGQRELVGNFP----------------GMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLT  286 (435)
T ss_pred             EEEEEECCCCcEEEeecCC----------------CcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEcc
Confidence            7888999888877665432                11112222222445555432221    245999999998877765


Q ss_pred             cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184           96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      .   .+.. .......-++ +|++.....    ....+|++|+.+...+.+...    ..........-++++|++.. .
T Consensus       287 ~---~~~~-~~~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~  353 (435)
T PRK05137        287 D---SPAI-DTSPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-Q  353 (435)
T ss_pred             C---CCCc-cCceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-c
Confidence            2   1111 1111112234 454332111    135799999988877776521    11111212222234444433 2


Q ss_pred             CCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC-CcceEEEEECCCCcEEEec
Q 012184          175 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       175 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~d~~~~d~~~~~W~~~~  247 (469)
                      ...  ...++++|+.+.....+.. +    .........-+++.+++....... ....++.+|+....-..++
T Consensus       354 ~~~--~~~i~~~d~~~~~~~~lt~-~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        354 GGG--QFSIGVMKPDGSGERILTS-G----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             CCC--ceEEEEEECCCCceEeccC-C----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            211  2478899987766554431 1    111111111244554443322211 1257999999877666554

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.43  E-value=0.36  Score=42.74  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=14.4

Q ss_pred             hhhhhhhhhhhhHhhhhhhhcchhhHHHHHH
Q 012184          366 SLTEVRTENSRFREKIDEVNSTHSELSKELS  396 (469)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~  396 (469)
                      .+.+...+..+|...+..++.+..++++++.
T Consensus        49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~   79 (201)
T PF13851_consen   49 LMAEISQENKRLSEPLKKAEEEVEELRKQLK   79 (201)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.42  E-value=0.27  Score=46.66  Aligned_cols=11  Identities=9%  Similarity=0.422  Sum_probs=4.1

Q ss_pred             hhhHhhhhhhh
Q 012184          375 SRFREKIDEVN  385 (469)
Q Consensus       375 ~~l~~~~~~~~  385 (469)
                      ..|+.++..++
T Consensus       182 ~~L~~e~~~L~  192 (312)
T smart00787      182 DALEEELRQLK  192 (312)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.42  E-value=3.7  Score=42.06  Aligned_cols=123  Identities=13%  Similarity=0.097  Sum_probs=64.7

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC-CCCC-CCcceEEEEEC-CEEEEEeccCCCCCccCc
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-KVPV-ARGGHSVTLVG-SRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g-~~p~-~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~  131 (469)
                      +-++.++.||+....       ..++.+|..|++  |+.-.... .... +.....++..+ +++|+-. .      ...
T Consensus        56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~------~g~  121 (488)
T cd00216          56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-F------DGR  121 (488)
T ss_pred             CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-C------CCe
Confidence            345779999987542       238999998876  87643211 0000 11122234445 6777532 1      345


Q ss_pred             EEEEECCCCe--EEEeeeCCCC-CCCCCCceEEEEcCcEEEEEecCCCC----cccCcEEEEECCCCc--eEee
Q 012184          132 VHFLDLETMT--WDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       132 v~~~d~~t~~--W~~~~~~g~~-p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~~~~--W~~~  196 (469)
                      ++.+|..|++  |+.-.. +.. +.-....+.++. ++.+| +|..+..    .....++.||..|++  |..-
T Consensus       122 v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         122 LVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             EEEEECCCCCEeeeecCC-CCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            8999998764  765421 000 000011222333 56454 4432211    123579999998765  8753

The alignment model contains an 8-bladed beta-propeller.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=95.36  E-value=3.5  Score=41.44  Aligned_cols=186  Identities=10%  Similarity=0.079  Sum_probs=92.3

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      ..++.+|+.++.-..+.   ..+..-.......-+.+|++.....+    ..++|++|+.++....+...   +.  ...
T Consensus       223 ~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~~  290 (429)
T PRK03629        223 SALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NNT  290 (429)
T ss_pred             cEEEEEECCCCCeEEcc---CCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--CcC
Confidence            45899999888766665   22221111111111335655433221    23599999999887766421   11  111


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  238 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~  238 (469)
                      ......|+..++|.....  ....+|.+|+.+..-..+...    ..........-+++.+++.+....  ..+++++|+
T Consensus       291 ~~~wSPDG~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~----~~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl  362 (429)
T PRK03629        291 EPTWFPDSQNLAYTSDQA--GRPQVYKVNINGGAPQRITWE----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDL  362 (429)
T ss_pred             ceEECCCCCEEEEEeCCC--CCceEEEEECCCCCeEEeecC----CCCccCEEECCCCCEEEEEEccCC--CceEEEEEC
Confidence            222223444444433211  135799999988776665321    111111111224444444332221  347899999


Q ss_pred             CCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          239 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       239 ~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .+..+..+.....       ..+ ..+  .+++..+++.+.++. ...++..+++..
T Consensus       363 ~~g~~~~Lt~~~~-------~~~-p~~--SpDG~~i~~~s~~~~-~~~l~~~~~~G~  408 (429)
T PRK03629        363 ATGGVQVLTDTFL-------DET-PSI--APNGTMVIYSSSQGM-GSVLNLVSTDGR  408 (429)
T ss_pred             CCCCeEEeCCCCC-------CCC-ceE--CCCCCEEEEEEcCCC-ceEEEEEECCCC
Confidence            9998887753210       111 122  235566666655432 335666776433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.32  E-value=0.16  Score=48.33  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=17.9

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL  419 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~  419 (469)
                      +..+++.++.+..++.+++++++.+..++..++.+++.+..++
T Consensus        48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l   90 (314)
T PF04111_consen   48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL   90 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444433333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PTZ00420 coronin; Provisional

Probab=95.29  E-value=4.3  Score=42.12  Aligned_cols=107  Identities=16%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184          115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  194 (469)
                      .+++.||.+.      .+.+||+.+..=.. ..  ..  +..-.++....++.+++.++.+     ..+.+||+.+..-.
T Consensus       139 ~iLaSgS~Dg------tIrIWDl~tg~~~~-~i--~~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        139 YIMCSSGFDS------FVNIWDIENEKRAF-QI--NM--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIA  202 (568)
T ss_pred             eEEEEEeCCC------eEEEEECCCCcEEE-EE--ec--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEE
Confidence            4555566442      48888988765211 11  11  1112233333356677766543     45889999876432


Q ss_pred             eeeecCCCCCCCcceEEE--E--ECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          195 QPEIKGDLVTGRAGHAGI--T--IDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       195 ~~~~~~~~p~~r~~~~~~--~--~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      .  ........+..-...  .  -++..++.+|.+.. ....+.+||+..
T Consensus       203 ~--tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~  249 (568)
T PTZ00420        203 S--SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN  249 (568)
T ss_pred             E--EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence            1  110111111111111  1  13455666665442 123577888764

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=95.27  E-value=0.65  Score=45.04  Aligned_cols=118  Identities=11%  Similarity=0.103  Sum_probs=69.8

Q ss_pred             ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcc-------cCcEE
Q 012184          112 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF-------FNDLH  184 (469)
Q Consensus       112 ~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-------~~~i~  184 (469)
                      .+++|+.++..       ....+||+.+..-...+   .++.+...-.++.++++ ||++........       .-++.
T Consensus        75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l  143 (342)
T PF07893_consen   75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL  143 (342)
T ss_pred             cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence            48899988654       33889999998876443   44555555566677555 999987643311       12233


Q ss_pred             EEEC--------CCCceEeeeecCCCCCCCc-------ceEEEEE-CCEEEE-EecCCCCCCcceEEEEECCCCcEEEec
Q 012184          185 VLDL--------QTNEWSQPEIKGDLVTGRA-------GHAGITI-DENWYI-VGGGDNNNGCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       185 ~~d~--------~~~~W~~~~~~~~~p~~r~-------~~~~~~~-~~~l~v-~GG~~~~~~~~d~~~~d~~~~~W~~~~  247 (469)
                      .|+.        ..-.|..++   ++|..+.       -.+-+++ +..|+| +-|..     .-.+.||+.+.+|+++.
T Consensus       144 ~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G  215 (342)
T PF07893_consen  144 VYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG  215 (342)
T ss_pred             ccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence            3331        123466654   2232222       1233344 566777 32211     24799999999999986


Q ss_pred             c
Q 012184          248 S  248 (469)
Q Consensus       248 ~  248 (469)
                      .
T Consensus       216 d  216 (342)
T PF07893_consen  216 D  216 (342)
T ss_pred             c
Confidence            4

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.26  E-value=3  Score=40.12  Aligned_cols=136  Identities=15%  Similarity=0.050  Sum_probs=63.7

Q ss_pred             ceEEEEccC-CceeeeeecccccCCccccCCCCCCCCCCcCeeeEE--ECCEEEEEccccCCCCCcceEEEEECC-CCeE
Q 012184           16 VVMVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSDSMIVRFIDLE-TNLC   91 (469)
Q Consensus        16 ~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~~~~~~~d~~-t~~W   91 (469)
                      .+..||+.+ +++..+....                .....+.++.  -+..||+. +...     ..+..|++. ++++
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~----------------~~~~~~~l~~spd~~~lyv~-~~~~-----~~i~~~~~~~~g~l   70 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVD----------------VPGQVQPMVISPDKRHLYVG-VRPE-----FRVLSYRIADDGAL   70 (330)
T ss_pred             CEEEEEECCCCceeeeeEEe----------------cCCCCccEEECCCCCEEEEE-ECCC-----CcEEEEEECCCCce
Confidence            677888864 6777666542                1111222222  24456664 3322     236667765 5667


Q ss_pred             EEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCe-E-EEeeeCCCCCCCCCCceEEEEcC-c
Q 012184           92 GVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMT-W-DAVEVTQTPPAPRYDHSAALHAN-R  166 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~-W-~~~~~~g~~p~~r~~~~~~~~~~-~  166 (469)
                      ..+..   .+.+..-+.++.. ++ .||+. .+.     .+.+.+|++.++. . ..+.   ..+.....|.++...+ +
T Consensus        71 ~~~~~---~~~~~~p~~i~~~~~g~~l~v~-~~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~  138 (330)
T PRK11028         71 TFAAE---SPLPGSPTHISTDHQGRFLFSA-SYN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNR  138 (330)
T ss_pred             EEeee---ecCCCCceEEEECCCCCEEEEE-EcC-----CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCC
Confidence            65542   1211111222222 34 45554 322     3557888876421 1 1111   1111222355444434 4


Q ss_pred             EEEEEecCCCCcccCcEEEEECCC
Q 012184          167 YLIVFGGCSHSIFFNDLHVLDLQT  190 (469)
Q Consensus       167 ~l~v~GG~~~~~~~~~i~~~d~~~  190 (469)
                      ++|+..-     ..+.+.+||+.+
T Consensus       139 ~l~v~~~-----~~~~v~v~d~~~  157 (330)
T PRK11028        139 TLWVPCL-----KEDRIRLFTLSD  157 (330)
T ss_pred             EEEEeeC-----CCCEEEEEEECC
Confidence            5665432     236799999876

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.22  E-value=3.2  Score=41.43  Aligned_cols=209  Identities=13%  Similarity=0.062  Sum_probs=105.2

Q ss_pred             CCEEEEEccccCCCC-----CcceEEEEECCCCeEE--EeecCCCCCCCCc-ceEEEEE-CC-EEEEEeccCCCCCccCc
Q 012184           62 GTKLLILGGHYKKSS-----DSMIVRFIDLETNLCG--VMETSGKVPVARG-GHSVTLV-GS-RLIIFGGEDRSRKLLND  131 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~-----~~~~~~~~d~~t~~W~--~~~~~g~~p~~r~-~~~~~~~-~~-~lyi~GG~~~~~~~~~~  131 (469)
                      ++..|++........     ....++++...+..-.  .+-   ..+.... ...+..- ++ .|+|.-....  . .++
T Consensus       180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~--~-~s~  253 (414)
T PF02897_consen  180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGT--S-ESE  253 (414)
T ss_dssp             TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSS--S-EEE
T ss_pred             CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEccc--c-CCe
Confidence            435555554444321     3567999988877654  222   1222222 2222222 33 3444333221  1 478


Q ss_pred             EEEEECCCC-----eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc---eEeeeecCCCC
Q 012184          132 VHFLDLETM-----TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLV  203 (469)
Q Consensus       132 v~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p  203 (469)
                      +++++....     .|..+.+.    ..-..+.+... ++.+|+....  +.....+..+++.+..   |..+-.  +..
T Consensus       254 v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~-~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~--~~~  324 (414)
T PF02897_consen  254 VYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHH-GDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLI--PED  324 (414)
T ss_dssp             EEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEE-TTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE----S
T ss_pred             EEEEeccccCCCcCCcEEEeCC----CCceEEEEEcc-CCEEEEeeCC--CCCCcEEEEecccccccccceeEEc--CCC
Confidence            999999875     78887631    11111222223 6678887653  2334678889988765   664321  111


Q ss_pred             CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC-CCcEEEeccCCCCCCCCCCCcceEEEEE--cCCcEEEEEeccC
Q 012184          204 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYN  280 (469)
Q Consensus       204 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~~~~~p~~r~~~s~~~~~~--~~~~~l~v~GG~~  280 (469)
                      .....-.+...+++|++..=   ......+.++|+. ...-..++. +.      .+ ++.....  .++...|.+.+..
T Consensus       325 ~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~v~~~~~~~~~~~~~~-p~------~g-~v~~~~~~~~~~~~~~~~ss~~  393 (414)
T PF02897_consen  325 EDVSLEDVSLFKDYLVLSYR---ENGSSRLRVYDLDDGKESREIPL-PE------AG-SVSGVSGDFDSDELRFSYSSFT  393 (414)
T ss_dssp             SSEEEEEEEEETTEEEEEEE---ETTEEEEEEEETT-TEEEEEEES-SS------SS-EEEEEES-TT-SEEEEEEEETT
T ss_pred             CceeEEEEEEECCEEEEEEE---ECCccEEEEEECCCCcEEeeecC-Cc------ce-EEeccCCCCCCCEEEEEEeCCC
Confidence            11233345556788877632   2235678999998 433333322 11      11 2222221  1244555566654


Q ss_pred             CCCCceEEEEECCCCCCC
Q 012184          281 GKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       281 ~~~~~~~~~~d~~~~~w~  298 (469)
                      .  ...+|.||+.+++..
T Consensus       394 ~--P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  394 T--PPTVYRYDLATGELT  409 (414)
T ss_dssp             E--EEEEEEEETTTTCEE
T ss_pred             C--CCEEEEEECCCCCEE
Confidence            3  457999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.22  E-value=0.38  Score=46.57  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  420 (469)
Q Consensus       376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~  420 (469)
                      .+.++..+.+.....++.+.+.++..+++.+.++.+.+.++.+++
T Consensus       358 ~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~  402 (493)
T KOG0804|consen  358 LLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER  402 (493)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444445555555566666666666555555554333

>PRK09039 hypothetical protein; Validated

Probab=95.16  E-value=0.26  Score=47.57  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=10.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q 012184          406 RSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       406 ~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      .-++..|+++++.+++++..++
T Consensus       136 ~~~V~~L~~qI~aLr~Qla~le  157 (343)
T PRK09039        136 LAQVELLNQQIAALRRQLAALE  157 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555544444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.15  E-value=0.33  Score=42.77  Aligned_cols=94  Identities=20%  Similarity=0.326  Sum_probs=47.2

Q ss_pred             HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhH
Q 012184          354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTI  429 (469)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~  429 (469)
                      ...+.....+...+.+.......+...+...+.......++++..+.++...++....+.++..+++++    ....+.+
T Consensus        84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~  163 (191)
T PF04156_consen   84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQEL  163 (191)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444445555555555555555555555555556666666666666666666655555522    2222334


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 012184          430 ENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       430 e~e~~~~~q~~~~~~~~~  447 (469)
                      ..+++++++.++++++.+
T Consensus       164 ~~~~~~~~~~~~~l~~~~  181 (191)
T PF04156_consen  164 RSQLERLQENLQQLEEKI  181 (191)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.11  E-value=0.26  Score=47.00  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 012184          429 IENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      .+++.+.+..+.+...++++++
T Consensus       111 ~~~e~~sl~~q~~~~~~~L~~L  132 (314)
T PF04111_consen  111 FQEERDSLKNQYEYASNQLDRL  132 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.10  E-value=2.3  Score=38.96  Aligned_cols=59  Identities=14%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             cCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC--CEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184          180 FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       180 ~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~  247 (469)
                      ...+++||+++..|....-.+  ..+|-. + ..++  +.+++.     .-..+.+.+||+.+.+.+.++
T Consensus       253 ~g~l~rfdPs~~sW~eypLPg--s~arpy-s-~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p  313 (353)
T COG4257         253 TGSLHRFDPSVTSWIEYPLPG--SKARPY-S-MRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLP  313 (353)
T ss_pred             CceeeEeCcccccceeeeCCC--CCCCcc-e-eeeccCCcEEee-----ccccCceeecCcccceEEEec
Confidence            356999999999999864322  223332 2 2333  445542     112457899999999988874

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.01  E-value=0.44  Score=45.33  Aligned_cols=53  Identities=15%  Similarity=0.308  Sum_probs=35.4

Q ss_pred             hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184          372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  424 (469)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~  424 (469)
                      .....++.++++.+.++..++.++++++.++...++++.+++..++...+.+.
T Consensus        56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666667777777777777777777777777777777766665555443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.98  E-value=0.52  Score=44.62  Aligned_cols=32  Identities=16%  Similarity=0.273  Sum_probs=12.1

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERSR  408 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~  408 (469)
                      .++++.+++..+.+..+++..+.+|.+.++.+
T Consensus       121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr  152 (499)
T COG4372         121 VRQELAAARQNLAKAQQELARLTKQAQDLQTR  152 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=94.97  E-value=1.1  Score=36.47  Aligned_cols=83  Identities=16%  Similarity=0.140  Sum_probs=55.4

Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC-CCcceEEEEE-CCCCc
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-NGCQETIVLN-MTKLA  242 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~d~~~~d-~~~~~  242 (469)
                      ||.+|-..-. .....+.|..||+.+.+|..+..............++.++++|.++.-.... ...-++|+++ ..+..
T Consensus         5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~   83 (129)
T PF08268_consen    5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE   83 (129)
T ss_pred             CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence            6656655443 2334577999999999999886421233455566778889998887543322 2356899884 66789


Q ss_pred             EEEecc
Q 012184          243 WSILTS  248 (469)
Q Consensus       243 W~~~~~  248 (469)
                      |++...
T Consensus        84 Wsk~~~   89 (129)
T PF08268_consen   84 WSKKHI   89 (129)
T ss_pred             EEEEEE
Confidence            997643

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.96  E-value=4.5  Score=40.49  Aligned_cols=185  Identities=12%  Similarity=0.048  Sum_probs=97.6

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      .+|.+|+.++.=+.+..   .+ .........-++ +|++.-...    ...++|++|+.+..++.++..   +.  ...
T Consensus       214 ~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~---~~--~d~  280 (419)
T PRK04043        214 TLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNY---PG--IDV  280 (419)
T ss_pred             EEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccC---CC--ccC
Confidence            69999998887666652   11 111111122234 555443322    145799999999998887532   11  111


Q ss_pred             eEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC---CcceEE
Q 012184          159 SAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN---GCQETI  234 (469)
Q Consensus       159 ~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~---~~~d~~  234 (469)
                      ...... +++||+.....   ...+||++|+.++....+...+.     .......-+..|++........   ...+++
T Consensus       281 ~p~~SPDG~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~  352 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRL---GYPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLY  352 (419)
T ss_pred             ccEECCCCCEEEEEECCC---CCceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence            122222 34566654332   23689999999988877653221     2222222233444443322111   235899


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          235 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       235 ~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      ++|+.+..+..+.....       .. ...+..  ++..++|-... .....++.++++.+.
T Consensus       353 v~d~~~g~~~~LT~~~~-------~~-~p~~SP--DG~~I~f~~~~-~~~~~L~~~~l~g~~  403 (419)
T PRK04043        353 LISTNSDYIRRLTANGV-------NQ-FPRFSS--DGGSIMFIKYL-GNQSALGIIRLNYNK  403 (419)
T ss_pred             EEECCCCCeEECCCCCC-------cC-CeEECC--CCCEEEEEEcc-CCcEEEEEEecCCCe
Confidence            99999999888764211       11 123333  33444443322 224568888886643

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.86  E-value=0.89  Score=38.30  Aligned_cols=54  Identities=22%  Similarity=0.361  Sum_probs=27.1

Q ss_pred             HhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          363 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       363 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      +...+.....+...+...++.++..++++++++...+.....++.++..++..+
T Consensus        57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~  110 (151)
T PF11559_consen   57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL  110 (151)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555555555555555544444444444444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.83  E-value=1.2  Score=43.71  Aligned_cols=110  Identities=18%  Similarity=0.279  Sum_probs=59.5

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeE-EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      +|+|+..|+..+.      +.+||..+..- ..+... ..|..+..  -+..++.++++|+-+.      -+-.+|+++.
T Consensus        79 DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~ah-~apv~~~~--f~~~d~t~l~s~sDd~------v~k~~d~s~a  143 (487)
T KOG0310|consen   79 DGRLLAAGDESGH------VKVFDMKSRVILRQLYAH-QAPVHVTK--FSPQDNTMLVSGSDDK------VVKYWDLSTA  143 (487)
T ss_pred             CCeEEEccCCcCc------EEEeccccHHHHHHHhhc-cCceeEEE--ecccCCeEEEecCCCc------eEEEEEcCCc
Confidence            6888888876554      78888555221 111100 12222211  2235788998886443      1445666666


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC-ceE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWS  194 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~  194 (469)
                      .- .....|.-..-|++  .++-.+++|++.||+++.     |-.||+.+. .|.
T Consensus       144 ~v-~~~l~~htDYVR~g--~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v  190 (487)
T KOG0310|consen  144 YV-QAELSGHTDYVRCG--DISPANDHIVVTGSYDGK-----VRLWDTRSLTSRV  190 (487)
T ss_pred             EE-EEEecCCcceeEee--ccccCCCeEEEecCCCce-----EEEEEeccCCcee
Confidence            53 33333433333332  222236789999999864     556776655 454

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.22  Score=50.14  Aligned_cols=10  Identities=10%  Similarity=0.053  Sum_probs=7.4

Q ss_pred             ECCEEEEEcc
Q 012184           61 WGTKLLILGG   70 (469)
Q Consensus        61 ~~~~iy~~GG   70 (469)
                      .+|.++.-+.
T Consensus        27 ~dg~~~~k~~   36 (652)
T COG2433          27 EDGEIVEKGE   36 (652)
T ss_pred             ecCcEEeehh
Confidence            5777887776

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.81  E-value=1.1  Score=36.87  Aligned_cols=75  Identities=13%  Similarity=0.221  Sum_probs=35.9

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      +..+..+....+..+.....+.+..++.+..++..+..+..++.+++.+|...+..-..+.+.+++.+.+....+
T Consensus        26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444555555555555555555555555555554444444444444444433333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=94.79  E-value=4.9  Score=40.06  Aligned_cols=147  Identities=12%  Similarity=0.074  Sum_probs=78.0

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      ..++++|+.++.-..+..   .+....... ..-++ .|++......    ..++|.+|+.+.....+.....   ... 
T Consensus       214 ~~i~v~d~~~g~~~~~~~---~~~~~~~~~-~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~~~-  281 (417)
T TIGR02800       214 PEIYVQDLATGQREKVAS---FPGMNGAPA-FSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---IDT-  281 (417)
T ss_pred             cEEEEEECCCCCEEEeec---CCCCccceE-ECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---CCC-
Confidence            459999999987766652   221111111 11233 5655433221    3569999999888776643211   110 


Q ss_pred             ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE-ECCEEEEEecCCCCCCcceEEEE
Q 012184          158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      .....-++++|++......   ...+|++|+.+..+..+...     ......... -+++.+++.....  ....++++
T Consensus       282 ~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~-----~~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~  351 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFR-----GGYNASPSWSPDGDLIAFVHREG--GGFNIAVM  351 (417)
T ss_pred             CEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecC-----CCCccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence            1111122344544432222   24799999988888766421     112222222 2455555544322  24579999


Q ss_pred             ECCCCcEEEec
Q 012184          237 NMTKLAWSILT  247 (469)
Q Consensus       237 d~~~~~W~~~~  247 (469)
                      |+.+..+..+.
T Consensus       352 d~~~~~~~~l~  362 (417)
T TIGR02800       352 DLDGGGERVLT  362 (417)
T ss_pred             eCCCCCeEEcc
Confidence            99887776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.74  E-value=1.6  Score=39.99  Aligned_cols=154  Identities=15%  Similarity=0.037  Sum_probs=82.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCc--ceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~--~~~~~~d~~t~~W~~   93 (469)
                      .+..+|+.+++++.+......           ..+..+....++.-++.||+---........  ..++++++. ++...
T Consensus        61 ~~~~~d~~~g~~~~~~~~~~~-----------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   61 GIAVVDPDTGKVTVLADLPDG-----------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             CEEEEETTTTEEEEEEEEETT-----------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             ceEEEecCCCcEEEEeeccCC-----------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            456779999999988876211           0134455555555577877753222111112  569999999 77666


Q ss_pred             eecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECC--CCeEEEeeeCCCCCCCC-CCceEEEEcCcEE
Q 012184           94 METSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLE--TMTWDAVEVTQTPPAPR-YDHSAALHANRYL  168 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~--t~~W~~~~~~g~~p~~r-~~~~~~~~~~~~l  168 (469)
                      +...    ..... +++.- ++ .||+.-      ...+.|+.|++.  +..+.........+... .--.+++..++.|
T Consensus       129 ~~~~----~~~pN-Gi~~s~dg~~lyv~d------s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  129 VADG----LGFPN-GIAFSPDGKTLYVAD------SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             EEEE----ESSEE-EEEEETTSSEEEEEE------TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred             EecC----ccccc-ceEECCcchheeecc------cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence            5521    11112 23332 33 577642      135669999885  33344433221222222 1234455557889


Q ss_pred             EEEecCCCCcccCcEEEEECCCCceEeee
Q 012184          169 IVFGGCSHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       169 ~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      |+..-     ..+.|++||+....-..+.
T Consensus       198 ~va~~-----~~~~I~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  198 WVADW-----GGGRIVVFDPDGKLLREIE  221 (246)
T ss_dssp             EEEEE-----TTTEEEEEETTSCEEEEEE
T ss_pred             EEEEc-----CCCEEEEECCCccEEEEEc
Confidence            88632     1257999999855555553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00094 HX Hemopexin-like repeats

Probab=94.71  E-value=2.8  Score=36.95  Aligned_cols=155  Identities=12%  Similarity=0.067  Sum_probs=74.8

Q ss_pred             EEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeC-CCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEE
Q 012184          109 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVT-QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLH  184 (469)
Q Consensus       109 ~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~-g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~  184 (469)
                      ++...+++|+|-|.        .+|+++.....  -..+... +.+|  ..--++.... ++++|+|-|       +..|
T Consensus        12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p--~~IDAa~~~~~~~~~yfFkg-------~~yw   74 (194)
T cd00094          12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP--SPVDAAFERPDTGKIYFFKG-------DKYW   74 (194)
T ss_pred             EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC--CCccEEEEECCCCEEEEECC-------CEEE
Confidence            34456889999653        36677654111  1111110 1122  2222333333 378999977       4688


Q ss_pred             EEECCCCceEeeeecC--CCCC--CCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEe-cc-CCCCCC-CC
Q 012184          185 VLDLQTNEWSQPEIKG--DLVT--GRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL-TS-VKGRNP-LA  256 (469)
Q Consensus       185 ~~d~~~~~W~~~~~~~--~~p~--~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~-~~-~~~~~p-~~  256 (469)
                      +|+..+..+.-+....  ..|.  .....+.... ++++|+|-|       +..|+||..+.....- +. +....+ .+
T Consensus        75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p  147 (194)
T cd00094          75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVP  147 (194)
T ss_pred             EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence            8886653332221111  1111  2222222222 578999988       3789999866543210 00 000111 11


Q ss_pred             CCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          257 SEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       257 r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      . ...+ ++.. .++.+|.|-|      +..|+||..+..
T Consensus       148 ~-~ida-a~~~-~~~~~yfF~g------~~y~~~d~~~~~  178 (194)
T cd00094         148 D-KVDA-AFRW-LDGYYYFFKG------DQYWRFDPRSKE  178 (194)
T ss_pred             C-Ccce-eEEe-CCCcEEEEEC------CEEEEEeCccce
Confidence            1 1111 1222 2367888876      358999987654

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.65  E-value=4.6  Score=39.21  Aligned_cols=250  Identities=15%  Similarity=0.097  Sum_probs=115.9

Q ss_pred             EEEcccCCC--cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            2 LLRCSIRNY--TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         2 ~~~GG~~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      +++|+...+  ..+  .++.||..+++++.+......             ..| ...+...-++.||+..... .....-
T Consensus         2 ~~vgsy~~~~~~gI--~~~~~d~~~g~l~~~~~~~~~-------------~~P-s~l~~~~~~~~LY~~~e~~-~~~g~v   64 (345)
T PF10282_consen    2 LYVGSYTNGKGGGI--YVFRFDEETGTLTLVQTVAEG-------------ENP-SWLAVSPDGRRLYVVNEGS-GDSGGV   64 (345)
T ss_dssp             EEEEECCSSSSTEE--EEEEEETTTTEEEEEEEEEES-------------SSE-CCEEE-TTSSEEEEEETTS-STTTEE
T ss_pred             EEEEcCCCCCCCcE--EEEEEcCCCCCceEeeeecCC-------------CCC-ceEEEEeCCCEEEEEEccc-cCCCCE
Confidence            356776541  111  356667799999988864211             111 1112222366777774432 111222


Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEECCCC-eEEEee------eCC
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVE------VTQ  149 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d~~t~-~W~~~~------~~g  149 (469)
                      ..+.++..+++.+.+..   .+......+-+.+  ++ .||+. -+.     .+.+.+|++... .-....      ..|
T Consensus        65 ~~~~i~~~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g  135 (345)
T PF10282_consen   65 SSYRIDPDTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSG  135 (345)
T ss_dssp             EEEEEETTTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred             EEEEECCCcceeEEeee---eccCCCCcEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCC
Confidence            34555566678888763   2322222222333  33 45554 222     345777877763 222221      112


Q ss_pred             CCC---CCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEE--CCEEEEE
Q 012184          150 TPP---APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI--DENWYIV  221 (469)
Q Consensus       150 ~~p---~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~  221 (469)
                      +.|   ..-..|.+....+ +++|+.. .    -.+.|++|++....  ....... ..|.+-.-..++..  +..+||+
T Consensus       136 ~~~~rq~~~h~H~v~~~pdg~~v~v~d-l----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~  209 (345)
T PF10282_consen  136 PNPDRQEGPHPHQVVFSPDGRFVYVPD-L----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVV  209 (345)
T ss_dssp             SSTTTTSSTCEEEEEE-TTSSEEEEEE-T----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEE
T ss_pred             CcccccccccceeEEECCCCCEEEEEe-c----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEe
Confidence            221   2223355554444 4666643 1    23679999887665  5443221 22332222233333  3478898


Q ss_pred             ecCCCCCCcceEEEEECC--CCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEEC
Q 012184          222 GGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       222 GG~~~~~~~~d~~~~d~~--~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      ...     .+.+..|+..  +..++.+...+..............+.+.+ +.+|||.-..    .+.+.+|++
T Consensus       210 ~e~-----s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~  274 (345)
T PF10282_consen  210 NEL-----SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG----SNSISVFDL  274 (345)
T ss_dssp             ETT-----TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEE
T ss_pred             cCC-----CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc----CCEEEEEEE
Confidence            664     3345555554  667766543221111111111333344444 5677775422    456777776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK09039 hypothetical protein; Validated

Probab=94.61  E-value=0.49  Score=45.76  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      +..++.+.+....+...++..++.|++.++.++..++..+.+.+++
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~  166 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR  166 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444445555555555555555444444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.55  E-value=0.32  Score=42.96  Aligned_cols=49  Identities=22%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      .++++.+..+.+....+..++.++..++.++.+++..+.|+.+-.+..+
T Consensus       102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~  150 (194)
T PF08614_consen  102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ  150 (194)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444555555555555555555555555554443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.52  E-value=1.3  Score=42.97  Aligned_cols=233  Identities=14%  Similarity=0.027  Sum_probs=108.0

Q ss_pred             EEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEc-cccCCCCCcce
Q 012184            2 LLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG-GHYKKSSDSMI   80 (469)
Q Consensus         2 ~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~G-G~~~~~~~~~~   80 (469)
                      +||+|...+.  . .++.+|+.+++=.++....+               ....+-..+.-++.||++- +        ..
T Consensus        50 llF~s~~dg~--~-nly~lDL~t~~i~QLTdg~g---------------~~~~g~~~s~~~~~~~Yv~~~--------~~  103 (386)
T PF14583_consen   50 LLFASDFDGN--R-NLYLLDLATGEITQLTDGPG---------------DNTFGGFLSPDDRALYYVKNG--------RS  103 (386)
T ss_dssp             EEEEE-TTSS----EEEEEETTT-EEEE---SS----------------B-TTT-EE-TTSSEEEEEETT--------TE
T ss_pred             EEEEeccCCC--c-ceEEEEcccCEEEECccCCC---------------CCccceEEecCCCeEEEEECC--------Ce
Confidence            4666654332  2 78999999999999888531               1233434444466776652 3        24


Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEecc----CC-------------CCCccCcEEEEECCCCeE
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGE----DR-------------SRKLLNDVHFLDLETMTW  142 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~----~~-------------~~~~~~~v~~~d~~t~~W  142 (469)
                      ++..|+.|.+=+.+-   ..|..-.++...+++ +.-.++|=.    ..             .......+...|+.+++.
T Consensus       104 l~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~  180 (386)
T PF14583_consen  104 LRRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER  180 (386)
T ss_dssp             EEEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred             EEEEECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence            899999998866665   456555555444443 211122211    00             012456788899999998


Q ss_pred             EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCccc-CcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE-EEE
Q 012184          143 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF-NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN-WYI  220 (469)
Q Consensus       143 ~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~-~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-l~v  220 (469)
                      +.+-..    ..--+|...+-.+..+++|.=-+.-... ..||..|.......++..  ..+...++|---.-++. |+.
T Consensus       181 ~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  181 KVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEE
T ss_pred             eEEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEE
Confidence            877532    1222455555445567777533332233 479999987666655542  23445556655444554 333


Q ss_pred             EecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184          221 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  280 (469)
Q Consensus       221 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~  280 (469)
                      .+... .+..--+..||+.+..=..+..++      .+.|    +..+.++.|+|.-|.+
T Consensus       255 ~~~~~-~~~~~~i~~~d~~t~~~~~~~~~p------~~~H----~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  255 DSYTP-GGQDFWIAGYDPDTGERRRLMEMP------WCSH----FMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEET-TT--EEEEEE-TTT--EEEEEEE-------SEEE----EEE-TTSSEEEEEE--
T ss_pred             EeecC-CCCceEEEeeCCCCCCceEEEeCC------ceee----eEEcCCCCEEEecCCC
Confidence            33322 222223667888776534443332      1223    2233367888776653

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.39  E-value=0.67  Score=44.60  Aligned_cols=16  Identities=25%  Similarity=0.430  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 012184          432 EVQILRQQKSAFEQEM  447 (469)
Q Consensus       432 e~~~~~q~~~~~~~~~  447 (469)
                      +++++..+++....++
T Consensus       245 ~i~~~~~~k~~l~~eI  260 (325)
T PF08317_consen  245 KIEELEEQKQELLAEI  260 (325)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.39  E-value=0.91  Score=42.36  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=23.5

Q ss_pred             hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      +++.+++..+..+..+|.....++...++.+..|..++.++++++
T Consensus       206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~  250 (306)
T PF04849_consen  206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC  250 (306)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555555555555443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.34  E-value=3.9  Score=37.08  Aligned_cols=187  Identities=15%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++..+++|+.+      ..+..||+.++......   ..... .-.++.... +.+++.|+.      ...+.+||+.+.
T Consensus        62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~---~~~~~-~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~  125 (289)
T cd00200          62 DGTYLASGSSD------KTIRLWDLETGECVRTL---TGHTS-YVSSVAFSPDGRILSSSSR------DKTIKVWDVETG  125 (289)
T ss_pred             CCCEEEEEcCC------CeEEEEEcCcccceEEE---eccCC-cEEEEEEcCCCCEEEEecC------CCeEEEEECCCc
Confidence            34456665542      23888888875322221   11111 112222222 356665552      335889998865


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC-CEEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWY  219 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~  219 (469)
                      .-...-.    .....-.++....++.+++.|..+     +.+.+||+.+..-....   . .....-.++.... +..+
T Consensus       126 ~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l  192 (289)
T cd00200         126 KCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATL---T-GHTGEVNSVAFSPDGEKL  192 (289)
T ss_pred             EEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeE---e-cCccccceEEECCCcCEE
Confidence            5333221    111112223333334455544322     46889998654322111   0 1111122233333 3356


Q ss_pred             EEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          220 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       220 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      ++++.     ...+.+||+.+.....  ......      .....+...+++.+++.++.++    .+.+||+.+
T Consensus       193 ~~~~~-----~~~i~i~d~~~~~~~~--~~~~~~------~~i~~~~~~~~~~~~~~~~~~~----~i~i~~~~~  250 (289)
T cd00200         193 LSSSS-----DGTIKLWDLSTGKCLG--TLRGHE------NGVNSVAFSPDGYLLASGSEDG----TIRVWDLRT  250 (289)
T ss_pred             EEecC-----CCcEEEEECCCCceec--chhhcC------CceEEEEEcCCCcEEEEEcCCC----cEEEEEcCC
Confidence            66554     2357889987644322  111110      1222333344456666666343    477888754

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=94.30  E-value=1.9  Score=35.06  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             EEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE-EC
Q 012184           59 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DL  137 (469)
Q Consensus        59 ~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~-d~  137 (469)
                      +.++|-||..+-.  .....+.+.+||+.+.+|+.+..............++.++|+|-++.-........-++|++ |.
T Consensus         2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence            3468888888665  22245669999999999998874211335566777888899988875443322123467887 56


Q ss_pred             CCCeEEEeee
Q 012184          138 ETMTWDAVEV  147 (469)
Q Consensus       138 ~t~~W~~~~~  147 (469)
                      .+..|.+...
T Consensus        80 ~k~~Wsk~~~   89 (129)
T PF08268_consen   80 EKQEWSKKHI   89 (129)
T ss_pred             ccceEEEEEE
Confidence            6789998754

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.27  E-value=0.53  Score=42.43  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhHHHH-------HHHHHHHHHHHHHHHH
Q 012184          392 SKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTIENE-------VQILRQQKSAFEQEME  448 (469)
Q Consensus       392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~e~e-------~~~~~q~~~~~~~~~~  448 (469)
                      ..+...++.+++.+-+.|..+++..+.+...    ..++.-+|-+       ++.+.+++.+...+++
T Consensus        59 k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   59 KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344456677777777777777766644443    3333344444       4444444444444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=94.27  E-value=0.29  Score=48.18  Aligned_cols=20  Identities=15%  Similarity=0.282  Sum_probs=8.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~  447 (469)
                      +++.++++++.+++++.+++
T Consensus       120 ql~~~~~~~~~~l~~l~~~l  139 (472)
T TIGR03752       120 QLKSERQQLQGLIDQLQRRL  139 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.20  E-value=6.9  Score=39.34  Aligned_cols=144  Identities=9%  Similarity=0.016  Sum_probs=73.8

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      .+|.+|+.++...++..   .+.   ......+  +++ |++.....    ....+|.+|+.+..-..+...+    .. 
T Consensus       268 ~I~~~d~~tg~~~~lt~---~~~---~~~~~~wSPDG~~I~f~s~~~----g~~~Iy~~d~~~g~~~~lt~~~----~~-  332 (429)
T PRK03629        268 NLYVMDLASGQIRQVTD---GRS---NNTEPTWFPDSQNLAYTSDQA----GRPQVYKVNINGGAPQRITWEG----SQ-  332 (429)
T ss_pred             EEEEEECCCCCEEEccC---CCC---CcCceEECCCCCEEEEEeCCC----CCceEEEEECCCCCeEEeecCC----CC-
Confidence            49999999998877752   111   1122222  344 44432211    1347999999888776664221    11 


Q ss_pred             CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      ........+++.+++.+....  ...++++|+.++.+..+...  ..  -...+ ..-++..+++.+.++.  ...+++.
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~~--~~--~~~p~-~SpDG~~i~~~s~~~~--~~~l~~~  403 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTDT--FL--DETPS-IAPNGTMVIYSSSQGM--GSVLNLV  403 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCCC--CC--CCCce-ECCCCCEEEEEEcCCC--ceEEEEE
Confidence            111222224434444332221  24699999999988776521  10  01111 2235666666554322  3456777


Q ss_pred             ECCCCcEEEec
Q 012184          237 NMTKLAWSILT  247 (469)
Q Consensus       237 d~~~~~W~~~~  247 (469)
                      ++....=..++
T Consensus       404 ~~~G~~~~~l~  414 (429)
T PRK03629        404 STDGRFKARLP  414 (429)
T ss_pred             ECCCCCeEECc
Confidence            77654444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.19  E-value=2.4  Score=42.65  Aligned_cols=123  Identities=15%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             CCCCCCceEEEEcCcE-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC--CEEEEEecCCCCC
Q 012184          152 PAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNN  228 (469)
Q Consensus       152 p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~  228 (469)
                      -.|+.+..++...-++ ||+.| .+     +++|+||++.+.|-.+-.+     .-...-++.++  +.|+.+||-++  
T Consensus       131 RIP~~GRDm~y~~~scDly~~g-sg-----~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~~g--  197 (703)
T KOG2321|consen  131 RIPKFGRDMKYHKPSCDLYLVG-SG-----SEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTEDG--  197 (703)
T ss_pred             ecCcCCccccccCCCccEEEee-cC-----cceEEEEcccccccccccc-----ccccceeeeecCccceEEecccCc--
Confidence            3455566665543222 55443 32     6899999999999664311     11122233344  45888887433  


Q ss_pred             CcceEEEEECCCCcEEEeccCCCC---CCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          229 GCQETIVLNMTKLAWSILTSVKGR---NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       229 ~~~d~~~~d~~~~~W~~~~~~~~~---~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                         .+..+|+...+-...-.....   .|..-...++.++...+++--+-+|-.+|    .+++||+..
T Consensus       198 ---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa  259 (703)
T KOG2321|consen  198 ---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRA  259 (703)
T ss_pred             ---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEccc
Confidence               456667655432211111111   11111222344444443344445554443    477777643

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=94.14  E-value=0.53  Score=44.99  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHh
Q 012184          412 LEAQIAELQKMLESSQT-IENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       412 ~~~~~~e~~~~l~~~~~-~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      |+.+++-++..+...|+ .+.++.+++++....+++++++
T Consensus       258 l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rl  297 (552)
T KOG2129|consen  258 LQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERL  297 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34444444444444442 3334444444444444443333

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=94.11  E-value=0.18  Score=50.06  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=15.8

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      |..++++.+..++++++++.+.|.+|.+++..+.+.|.++
T Consensus       105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~  144 (907)
T KOG2264|consen  105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL  144 (907)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence            3333334444444444444444444444333333333333

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=94.10  E-value=4.7  Score=37.07  Aligned_cols=159  Identities=14%  Similarity=0.059  Sum_probs=88.7

Q ss_pred             CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEE-E--eecCC---CCCCCCcce---EEEEECCEEEEEe
Q 012184           50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-V--METSG---KVPVARGGH---SVTLVGSRLIIFG  120 (469)
Q Consensus        50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~--~~~~g---~~p~~r~~~---~~~~~~~~lyi~G  120 (469)
                      |.+-.|-..++.++.+|+--.      .++.+..||+.++.-. .  ++--+   ..|....++   -.++-.+-|+++=
T Consensus        66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY  139 (250)
T PF02191_consen   66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY  139 (250)
T ss_pred             eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence            344456666778888887733      4566999999998755 3  33111   112111222   2333345677775


Q ss_pred             ccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecC
Q 012184          121 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  200 (469)
Q Consensus       121 G~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  200 (469)
                      ....+. ..-.+-.+|+.+..-...-.+ ..+.+..+.+.++.  +.||++...+... ..-.+.||+.+++=..+..  
T Consensus       140 at~~~~-g~ivvskld~~tL~v~~tw~T-~~~k~~~~naFmvC--GvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--  212 (250)
T PF02191_consen  140 ATEDNN-GNIVVSKLDPETLSVEQTWNT-SYPKRSAGNAFMVC--GVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--  212 (250)
T ss_pred             ecCCCC-CcEEEEeeCcccCceEEEEEe-ccCchhhcceeeEe--eEEEEEEECCCCC-cEEEEEEECCCCceeceee--
Confidence            544322 123356677776543222211 34444444444443  3588887655432 3456899999887665542  


Q ss_pred             CCCCCCcceEEEEEC---CEEEEE
Q 012184          201 DLVTGRAGHAGITID---ENWYIV  221 (469)
Q Consensus       201 ~~p~~r~~~~~~~~~---~~l~v~  221 (469)
                      +.+.+-..+++...+   ..||+.
T Consensus       213 ~f~~~~~~~~~l~YNP~dk~LY~w  236 (250)
T PF02191_consen  213 PFPNPYGNISMLSYNPRDKKLYAW  236 (250)
T ss_pred             eeccccCceEeeeECCCCCeEEEE
Confidence            445555566676664   468887

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.10  E-value=0.66  Score=44.97  Aligned_cols=7  Identities=14%  Similarity=0.648  Sum_probs=3.3

Q ss_pred             EEEEECC
Q 012184          287 VFVMRLK  293 (469)
Q Consensus       287 ~~~~d~~  293 (469)
                      +|.+++.
T Consensus       269 ~yalel~  275 (493)
T KOG0804|consen  269 CYALELE  275 (493)
T ss_pred             eEEEeec
Confidence            4444443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=94.09  E-value=0.58  Score=49.17  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=48.8

Q ss_pred             hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  420 (469)
Q Consensus       350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~  420 (469)
                      ..++..++.+.+.....+.....+.++|.....++....+.++.+...++.++.+.+.++..+-+...||+
T Consensus        33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselE  103 (717)
T PF09730_consen   33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELE  103 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            34466666666666667777777778888778887777777777777777777777776665544443333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.02  E-value=0.46  Score=51.29  Aligned_cols=41  Identities=17%  Similarity=0.332  Sum_probs=17.6

Q ss_pred             HHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184          360 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  400 (469)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~  400 (469)
                      ++.++..+.+......++...+.+.+..+...+.++.+++.
T Consensus       684 ~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  684 RREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333344444444444444444444444444444444444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=93.85  E-value=8  Score=38.83  Aligned_cols=181  Identities=9%  Similarity=-0.008  Sum_probs=88.0

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  155 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r  155 (469)
                      ..+|.+|+.++.=..+.   ..+..   .....+  ++ +|++....+.    ..++|.+|+.+.....+...   . ..
T Consensus       220 ~~I~~~dl~~g~~~~l~---~~~g~---~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~  285 (427)
T PRK02889        220 PVVYVHDLATGRRRVVA---NFKGS---NSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GI  285 (427)
T ss_pred             cEEEEEECCCCCEEEee---cCCCC---ccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CC
Confidence            35999999988755554   22211   112222  33 5554433222    45799999988776655321   1 11


Q ss_pred             CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE-ECCEEEEEecCCCCCCcceEE
Q 012184          156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQETI  234 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~d~~  234 (469)
                      . .......|++.++|.....  ....+|.+++.+.....+...+     ........ -+++.+++....+.  ...++
T Consensus       286 ~-~~~~wSpDG~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~  355 (427)
T PRK02889        286 D-TEPFFSPDGRSIYFTSDRG--GAPQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG--AFKLY  355 (427)
T ss_pred             C-cCeEEcCCCCEEEEEecCC--CCcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC--cEEEE
Confidence            1 1122223443334432211  1257899998887776664211     11111122 23444334332211  23789


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          235 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       235 ~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      ++|+.+.....+.....       .. ...+  .+++..+++....+. ...++.++.+.
T Consensus       356 v~d~~~g~~~~lt~~~~-------~~-~p~~--spdg~~l~~~~~~~g-~~~l~~~~~~g  404 (427)
T PRK02889        356 VQDLATGQVTALTDTTR-------DE-SPSF--APNGRYILYATQQGG-RSVLAAVSSDG  404 (427)
T ss_pred             EEECCCCCeEEccCCCC-------cc-CceE--CCCCCEEEEEEecCC-CEEEEEEECCC
Confidence            99998888776642111       11 1122  234455555543322 34577777743

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=93.84  E-value=0.44  Score=41.34  Aligned_cols=56  Identities=25%  Similarity=0.327  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHH
Q 012184          393 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      ..+...-.+|.+++.++..|.+...-|.++++.+.    .|..+++.+..+...+.++++
T Consensus        60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~  119 (182)
T PF15035_consen   60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE  119 (182)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777788888888887777776776666555    466677776666666655555

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.69  E-value=1.6  Score=42.61  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=22.2

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  394 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e  394 (469)
                      ..++...+.+....+.....+....++.++..+.++..+..+
T Consensus       152 ~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~e  193 (420)
T COG4942         152 YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE  193 (420)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555554443333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.68  E-value=2.5  Score=32.56  Aligned_cols=63  Identities=27%  Similarity=0.382  Sum_probs=38.0

Q ss_pred             HHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184          356 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  425 (469)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~  425 (469)
                      +++....++..+........+|..       +..+++..++.++.+......++.+++.++.|+.+.+..
T Consensus        14 l~n~La~Le~slE~~K~S~~eL~k-------qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   14 LQNRLASLERSLEDEKTSQGELAK-------QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444432       333355566677777777778888888888887777655

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.66  E-value=1.5  Score=40.05  Aligned_cols=78  Identities=28%  Similarity=0.377  Sum_probs=40.9

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-------RSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS  441 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~-------~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~  441 (469)
                      +..+....++..+..+.+++.++..+...+..+       .++...++.++..|..++...+    ..++.+..+++++.
T Consensus       128 ~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id  207 (237)
T PF00261_consen  128 ELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEID  207 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444455555555555544444433       3444555555556666654444    45566666666666


Q ss_pred             HHHHHHHHh
Q 012184          442 AFEQEMERA  450 (469)
Q Consensus       442 ~~~~~~~~~  450 (469)
                      .++.++...
T Consensus       208 ~le~eL~~~  216 (237)
T PF00261_consen  208 RLEDELEKE  216 (237)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.59  E-value=1.3  Score=40.78  Aligned_cols=32  Identities=13%  Similarity=0.194  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          392 SKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      .++++.++..+.+++..+..+++++.++++++
T Consensus        62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi   93 (251)
T PF11932_consen   62 EREIENLEVYNEQLERQVASQEQELASLEQQI   93 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.58  E-value=1.7  Score=36.62  Aligned_cols=42  Identities=19%  Similarity=0.406  Sum_probs=17.0

Q ss_pred             hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      ++...++..+..++.++.+++..+.++...+.++..++.++.
T Consensus        63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~  104 (151)
T PF11559_consen   63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK  104 (151)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444443333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.57  E-value=0.76  Score=52.48  Aligned_cols=62  Identities=15%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184          352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  413 (469)
Q Consensus       352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~  413 (469)
                      ..+.++.+...++..+.......+.++..+......+.++.+++.+.+.++++.+..+..++
T Consensus       601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (1201)
T PF12128_consen  601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK  662 (1201)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34455555555555555555555555555555555555555555554444444444443333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.56  E-value=1.1  Score=41.60  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=14.3

Q ss_pred             hhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184          380 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA  414 (469)
Q Consensus       380 ~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~  414 (469)
                      +.++++...+++..+|-..+.-+.+.+.+.+.+|.
T Consensus       100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~  134 (401)
T PF06785_consen  100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG  134 (401)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            33333444444444444444433333333333333

>smart00284 OLF Olfactomedin-like domains

Probab=93.36  E-value=6.3  Score=36.14  Aligned_cols=194  Identities=14%  Similarity=0.020  Sum_probs=98.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEE----CCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFID----LETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d----~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      .+++|+..+...   ..+.+..|.    +..+.+...-   .+|.+-.|.+.+++++.||+--.      .++.|..||+
T Consensus        34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL  101 (255)
T smart00284       34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL  101 (255)
T ss_pred             CceEEEEccccC---CCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence            567888766531   123355652    3344443332   46777888889999999998532      2567999999


Q ss_pred             CCCeEEEeeeC-C-----CCCC---CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184          138 ETMTWDAVEVT-Q-----TPPA---PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  208 (469)
Q Consensus       138 ~t~~W~~~~~~-g-----~~p~---~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  208 (469)
                      .+.+-...... +     ..|-   +-...-.++..++ |+++=....+.-.--+-.+|+.+-.-+..-.+ ..+.+..+
T Consensus       102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~  179 (255)
T smart00284      102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWIT-TYNKRSAS  179 (255)
T ss_pred             CCCcEEEEEecCccccccccccccCCCccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEc-CCCccccc
Confidence            99876533311 0     1111   1111233444345 66553322211111234666665442221111 33333333


Q ss_pred             eEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEE
Q 012184          209 HAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAF  276 (469)
Q Consensus       209 ~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~  276 (469)
                       .+.++-+.||++-.. ......-.+.||+.+.+=.. ..++-+.   +++ ....+-.++ +..||+.
T Consensus       180 -naFmvCGvLY~~~s~-~~~~~~I~yayDt~t~~~~~-~~i~f~n---~y~-~~s~l~YNP~d~~LY~w  241 (255)
T smart00284      180 -NAFMICGILYVTRSL-GSKGEKVFYAYDTNTGKEGH-LDIPFEN---MYE-YISMLDYNPNDRKLYAW  241 (255)
T ss_pred             -ccEEEeeEEEEEccC-CCCCcEEEEEEECCCCccce-eeeeecc---ccc-cceeceeCCCCCeEEEE
Confidence             455566899988431 11122336899998765332 2222221   222 233334455 6778765

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.35  E-value=1.1  Score=41.05  Aligned_cols=13  Identities=23%  Similarity=0.312  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHH
Q 012184          429 IENEVQILRQQKS  441 (469)
Q Consensus       429 ~e~e~~~~~q~~~  441 (469)
                      .+.|...+++++.
T Consensus       101 ke~Ea~~lq~el~  113 (246)
T PF00769_consen  101 KEEEAEELQEELE  113 (246)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PTZ00421 coronin; Provisional

Probab=93.33  E-value=11  Score=38.67  Aligned_cols=156  Identities=14%  Similarity=0.106  Sum_probs=70.5

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      +.+++.||.+.      .+..+|+.++.-...- . ...   .....+.+  ++.+++.|+.+.      .+.+||+.++
T Consensus       138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~-~h~---~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg  200 (493)
T PTZ00421        138 MNVLASAGADM------VVNVWDVERGKAVEVI-K-CHS---DQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDG  200 (493)
T ss_pred             CCEEEEEeCCC------EEEEEECCCCeEEEEE-c-CCC---CceEEEEEECCCCEEEEecCCC------EEEEEECCCC
Confidence            45777776532      3888898877532221 0 011   11112222  466777776543      3888999876


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENW  218 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l  218 (469)
                      .-.. ...+. ...+.. .+....++..++..|.+.. .-+.+.+||+.+..-. +... .... .....+..+  ++.+
T Consensus       201 ~~v~-tl~~H-~~~~~~-~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p-~~~~-~~d~-~~~~~~~~~d~d~~~  273 (493)
T PTZ00421        201 TIVS-SVEAH-ASAKSQ-RCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASP-YSTV-DLDQ-SSALFIPFFDEDTNL  273 (493)
T ss_pred             cEEE-EEecC-CCCcce-EEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCc-eeEe-ccCC-CCceEEEEEcCCCCE
Confidence            5321 11111 111111 1222223224444443221 1256888998654311 1100 1111 111222233  4556


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~  246 (469)
                      +++||..    -..+.+||+.+......
T Consensus       274 L~lggkg----Dg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        274 LYIGSKG----EGNIRCFELMNERLTFC  297 (493)
T ss_pred             EEEEEeC----CCeEEEEEeeCCceEEE
Confidence            6666621    12477888877665443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.30  E-value=0.69  Score=50.20  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=38.8

Q ss_pred             hhhhhHhhhhhhhcchhh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSE-LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF  443 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e-~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~  443 (469)
                      ....++.++++++..+.+ +.+-+..++.+.+..+.++..++.++++++++.......+.|+.+++++.+..
T Consensus       317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~  388 (754)
T TIGR01005       317 RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAK  388 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence            344555555555554332 33333445555666666666777777777766655555555555555554433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=93.29  E-value=2.2  Score=36.00  Aligned_cols=59  Identities=25%  Similarity=0.359  Sum_probs=33.8

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFK  411 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~  411 (469)
                      +..+...+.++-.+-...+.+.+.+++++++.+..+.+.-.+...++......+.++.+
T Consensus         8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e   66 (159)
T PF05384_consen    8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE   66 (159)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555556666666777777777766666665555555555444444444433

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.28  E-value=6.2  Score=35.76  Aligned_cols=177  Identities=15%  Similarity=0.093  Sum_probs=78.8

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      +.+++.|+..      ..+..||+.+..-...-.    .....-.++.... +.+++.|+ .     ...+.+||+.+..
T Consensus       105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~-----~~~i~i~d~~~~~  168 (289)
T cd00200         105 GRILSSSSRD------KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSS-Q-----DGTIKLWDLRTGK  168 (289)
T ss_pred             CCEEEEecCC------CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEc-C-----CCcEEEEEccccc
Confidence            4566665522      238889988655333221    1111112222223 34444443 1     2348889987544


Q ss_pred             EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC-CEEEE
Q 012184          142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI  220 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v  220 (469)
                      -...-.    .....-.++....++..+++++.+     +.+.+||+.+.......  .  .....-.++.... +.+++
T Consensus       169 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         169 CVATLT----GHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             cceeEe----cCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcEEE
Confidence            222111    011112233333344455555542     56889998764433211  0  1111222333333 34555


Q ss_pred             EecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184          221 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  281 (469)
Q Consensus       221 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~  281 (469)
                      .++.+     ..+.+||+.+..-.  ..+....      .....+...+++.+++.++.++
T Consensus       236 ~~~~~-----~~i~i~~~~~~~~~--~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         236 SGSED-----GTIRVWDLRTGECV--QTLSGHT------NSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             EEcCC-----CcEEEEEcCCceeE--EEccccC------CcEEEEEECCCCCEEEEecCCC
Confidence            54422     35788888754322  1222111      1233333444446677777655

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.23  E-value=1  Score=46.31  Aligned_cols=53  Identities=23%  Similarity=0.364  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF  443 (469)
Q Consensus       391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~  443 (469)
                      +...+...+.++..++.++..+++++++++++.......+.++..++++.+..
T Consensus       315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~  367 (498)
T TIGR03007       315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVN  367 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            44556666666666677777777777777777665555555555555555433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.22  E-value=1.2  Score=41.09  Aligned_cols=41  Identities=15%  Similarity=0.177  Sum_probs=15.5

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      +..++..++.+++.++.+.++++..+...++++.++++++.
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~   94 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE   94 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.21  E-value=2.5  Score=34.81  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=8.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHH
Q 012184          396 SSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      ..+.+.+++.++++.+|+...
T Consensus        83 ~~L~k~lq~~q~kv~eLE~~~  103 (140)
T PF10473_consen   83 ENLDKELQKKQEKVSELESLN  103 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333333444444444444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.17  E-value=2.4  Score=36.55  Aligned_cols=6  Identities=33%  Similarity=0.589  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 012184          441 SAFEQE  446 (469)
Q Consensus       441 ~~~~~~  446 (469)
                      ..++++
T Consensus       182 s~LEeq  187 (193)
T PF14662_consen  182 SRLEEQ  187 (193)
T ss_pred             HHHHHH
Confidence            333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.12  E-value=0.48  Score=41.26  Aligned_cols=71  Identities=21%  Similarity=0.380  Sum_probs=41.7

Q ss_pred             hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHH
Q 012184          369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS----QTIENEVQILRQQ  439 (469)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~----~~~e~e~~~~~q~  439 (469)
                      +.+...+.++.++++...+.+++.+++.+++.++...++++..++.+...|.+.+...    .+|++...++...
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            3444555566666666666777777777777777777777766666555444443322    2455555444444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.11  E-value=0.55  Score=41.45  Aligned_cols=74  Identities=18%  Similarity=0.231  Sum_probs=24.2

Q ss_pred             hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184          352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  425 (469)
Q Consensus       352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~  425 (469)
                      ++..+...+.++...+.....+...++.++.+....+.+++.++..++.++..+.+.+.+.+..++.++.++..
T Consensus        82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~  155 (194)
T PF08614_consen   82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA  155 (194)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555666666666666666666666666666666666655555555555544444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.05  E-value=0.92  Score=44.18  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      ...++.+.++.--.++.+..+++.++.+++.++++++.|..++
T Consensus       318 ~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~  360 (622)
T COG5185         318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL  360 (622)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3344444444444555555666666666666666666655544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.02  E-value=1  Score=43.99  Aligned_cols=68  Identities=16%  Similarity=0.332  Sum_probs=40.3

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  420 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~  420 (469)
                      +.+++.+...++..+.....+..+|+.++.+.++++..+++++.+....+.+.+.++.+++..+..++
T Consensus        40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            44445555555555556666666666666666666666666666666666666655555555444333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.98  E-value=1.1  Score=46.66  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV  403 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~  403 (469)
                      ...++.+...|+..+.....+...|+.+.......++++++.|.+++.+++
T Consensus        17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~   67 (617)
T PF15070_consen   17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA   67 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            555666666666666666666666666666666666666666666665544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=92.94  E-value=10  Score=37.27  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=24.5

Q ss_pred             CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCC
Q 012184          130 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS  177 (469)
Q Consensus       130 ~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~  177 (469)
                      +.+-+||++.+.--.     ....|+.-+++++...++.+.+|+..+.
T Consensus       198 ~t~k~wdlS~g~LLl-----ti~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  198 RTIKLWDLSLGVLLL-----TITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             ceEEEEEeccceeeE-----EEecCCcceeEEEcccccEEEecCCcce
Confidence            347778888775322     2234555566666544556666665543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.92  E-value=8.6  Score=36.44  Aligned_cols=203  Identities=12%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEE
Q 012184           55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVH  133 (469)
Q Consensus        55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~  133 (469)
                      .+++...++..|+.|-.   .    .++.-.=.-.+|.+++..  .+.+-..+.+..+ ++.++++|..       ..||
T Consensus        64 l~~I~f~~~~g~ivG~~---g----~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy  127 (302)
T PF14870_consen   64 LNSISFDGNEGWIVGEP---G----LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR-------GAIY  127 (302)
T ss_dssp             EEEEEEETTEEEEEEET---T----EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT---------EE
T ss_pred             EEEEEecCCceEEEcCC---c----eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------CcEE
Confidence            44555568899988632   1    122222235579998742  2333344445554 4567776532       2365


Q ss_pred             EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE
Q 012184          134 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT  213 (469)
Q Consensus       134 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~  213 (469)
                      +=.-.-.+|+.+...    ..-....+....++.+++++..+     +-+...|+-...|....    .+..|.-.++..
T Consensus       128 ~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~----r~~~~riq~~gf  194 (302)
T PF14870_consen  128 RTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHN----RNSSRRIQSMGF  194 (302)
T ss_dssp             EESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE------SSS-EEEEEE
T ss_pred             EeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEc----cCccceehhcee
Confidence            555456799987531    12222334445577666666432     12234566667798864    345566666665


Q ss_pred             E-CCEEEEEecCCCCCCcceEEEEE--CCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184          214 I-DENWYIVGGGDNNNGCQETIVLN--MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM  290 (469)
Q Consensus       214 ~-~~~l~v~GG~~~~~~~~d~~~~d--~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  290 (469)
                      . ++.++++.=  +.    .+..-+  -....|.+.. .    |....++.+..+...+.+.+++.||..     .+++=
T Consensus       195 ~~~~~lw~~~~--Gg----~~~~s~~~~~~~~w~~~~-~----~~~~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~S  258 (302)
T PF14870_consen  195 SPDGNLWMLAR--GG----QIQFSDDPDDGETWSEPI-I----PIKTNGYGILDLAYRPPNEIWAVGGSG-----TLLVS  258 (302)
T ss_dssp             -TTS-EEEEET--TT----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT------EEEE
T ss_pred             cCCCCEEEEeC--Cc----EEEEccCCCCcccccccc-C----CcccCceeeEEEEecCCCCEEEEeCCc-----cEEEe
Confidence            5 456666631  00    333333  3455676621 1    223345665566666678899999843     24433


Q ss_pred             ECCCCCCCCccc
Q 012184          291 RLKPRDIPRPKI  302 (469)
Q Consensus       291 d~~~~~w~~~~~  302 (469)
                      .=..++|.+...
T Consensus       259 ~DgGktW~~~~~  270 (302)
T PF14870_consen  259 TDGGKTWQKDRV  270 (302)
T ss_dssp             SSTTSS-EE-GG
T ss_pred             CCCCccceECcc
Confidence            334567876543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.90  E-value=2  Score=41.06  Aligned_cols=71  Identities=25%  Similarity=0.405  Sum_probs=36.3

Q ss_pred             HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Q 012184          378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES--------SQTIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~--------~~~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      ...+...+.++.+++..++.++.++..++.+...|+.++.+++.+...        +..++.++.+++.+.++..++.+
T Consensus       208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~  286 (312)
T PF00038_consen  208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ  286 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence            333444445555555555556655655555556666665555444322        22455555555555554444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=92.80  E-value=0.66  Score=45.82  Aligned_cols=23  Identities=9%  Similarity=0.387  Sum_probs=10.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHh
Q 012184          428 TIENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      ++++|++++.++++++...++++
T Consensus       113 ~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752       113 ELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=92.69  E-value=2.2  Score=39.81  Aligned_cols=10  Identities=20%  Similarity=0.567  Sum_probs=3.8

Q ss_pred             HHHHHHhHHH
Q 012184          353 IDAIKEDKRV  362 (469)
Q Consensus       353 ~~~l~~~~~~  362 (469)
                      +..++.++..
T Consensus        86 l~~l~keKe~   95 (310)
T PF09755_consen   86 LQQLKKEKET   95 (310)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.62  E-value=1.8  Score=34.68  Aligned_cols=90  Identities=24%  Similarity=0.303  Sum_probs=42.4

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHhhh
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML----ESSQT  428 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l----~~~~~  428 (469)
                      ++.|+...+.++..+...+.+..++..+-+++..++-.+..+...    +.....+...++.++++++++.    +..-+
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~----~~~~~~~~~~L~~el~~l~~ry~t~LellGE   93 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE----LRALKKEVEELEQELEELQQRYQTLLELLGE   93 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            555555555554444444444444443333333333333332222    2333445556666666666663    33334


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 012184          429 IENEVQILRQQKSAFEQE  446 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~~~  446 (469)
                      ...++++++.-++.+..-
T Consensus        94 K~E~veEL~~Dv~DlK~m  111 (120)
T PF12325_consen   94 KSEEVEELRADVQDLKEM  111 (120)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            555666666655554443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=92.60  E-value=3.9  Score=35.58  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=14.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184          419 LQKMLESSQTIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       419 ~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      +.++-+.++.-.+.++.|.+++.....+++
T Consensus       139 l~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~  168 (188)
T PF05335_consen  139 LAEKTQLLEAAKRRVEELQRQLQAARADYE  168 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344455555555555444443

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=92.42  E-value=1.2  Score=41.11  Aligned_cols=24  Identities=17%  Similarity=0.022  Sum_probs=10.9

Q ss_pred             HHhhcccccccCcccccccccCCC
Q 012184          318 AYALAKSEKLDIPKTLSSKFAGIG  341 (469)
Q Consensus       318 ~~~~gg~~~~~~~~~~~~~~~~~~  341 (469)
                      ++.|+.-.+.+...+......+..
T Consensus        23 ~iLfalLIwgS~~~~~e~~~gG~g   46 (387)
T COG3064          23 IILFALLIWGSLDETIEASGGGGG   46 (387)
T ss_pred             HHHHHHHHHhhhhhcccccCCCCC
Confidence            344444444444444444444433

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.37  E-value=1.7  Score=43.24  Aligned_cols=70  Identities=19%  Similarity=0.322  Sum_probs=44.2

Q ss_pred             hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184          352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  421 (469)
Q Consensus       352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~  421 (469)
                      .+-.|+++...+...+...+.+.+++....++..+..+.++-+-..++.++...+.|+..+-+...||++
T Consensus       108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEE  177 (772)
T KOG0999|consen  108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEE  177 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555566666666667777777777777777766666666666666666666666666555444444433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.34  E-value=0.66  Score=42.33  Aligned_cols=10  Identities=30%  Similarity=0.345  Sum_probs=5.1

Q ss_pred             cCCCceeEee
Q 012184          456 QGSGGVWRWI  465 (469)
Q Consensus       456 q~~~~~~~~~  465 (469)
                      |..||.=.||
T Consensus       111 q~nG~~t~Yi  120 (265)
T COG3883         111 QVNGTATSYI  120 (265)
T ss_pred             HHcCChhHHH
Confidence            5555554444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.33  E-value=2.3  Score=41.30  Aligned_cols=46  Identities=20%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHH
Q 012184          347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS  392 (469)
Q Consensus       347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~  392 (469)
                      ++.+..+++++.-...++..+...+....++...+...-+.+...+
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sRE  261 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESRE  261 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344446667666666666666666666666555555444443333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.26  E-value=2.7  Score=37.47  Aligned_cols=27  Identities=7%  Similarity=0.268  Sum_probs=11.3

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLV  403 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~  403 (469)
                      |..++++++.++.+++.+.+++.-++.
T Consensus        50 lesqL~q~etrnrdl~t~nqrl~~E~e   76 (333)
T KOG1853|consen   50 LESQLDQLETRNRDLETRNQRLTTEQE   76 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333333

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=92.18  E-value=2.3  Score=36.63  Aligned_cols=85  Identities=13%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184          372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAT  451 (469)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~  451 (469)
                      ....+|+.+.+..++.+.+-+...+.++..+...+++..+.....++.   .++.+.|+.|....+.++.++.+++   .
T Consensus       105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~---r~ea~aL~~e~~aaqaQL~~lQ~qv---~  178 (192)
T PF11180_consen  105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQA---RQEAQALEAERRAAQAQLRQLQRQV---R  178 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            333344444444444444444444444444444333322222221111   2233345556666666666665555   3


Q ss_pred             hhcccCCCcee
Q 012184          452 SVQTQGSGGVW  462 (469)
Q Consensus       452 ~~q~q~~~~~~  462 (469)
                      ++|+|...++|
T Consensus       179 ~Lq~q~~~~~~  189 (192)
T PF11180_consen  179 QLQRQANEPIP  189 (192)
T ss_pred             HHHHHhcCCCC
Confidence            45666666666

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.12  E-value=0.72  Score=46.26  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=18.8

Q ss_pred             hhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          384 VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       384 ~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ++...+..+..+..++.+.....+.++.++.+..+|+.++
T Consensus       285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444455555555555555553

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.08  E-value=2.1  Score=46.73  Aligned_cols=10  Identities=0%  Similarity=-0.273  Sum_probs=4.0

Q ss_pred             chhhhHHHhh
Q 012184          312 AASVTAAYAL  321 (469)
Q Consensus       312 ~~~~~~~~~~  321 (469)
                      +.+...++.-
T Consensus       741 vTL~G~lIe~  750 (1293)
T KOG0996|consen  741 VTLDGSLIEK  750 (1293)
T ss_pred             EEecceeecc
Confidence            3333444433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=92.01  E-value=1.7  Score=46.27  Aligned_cols=48  Identities=21%  Similarity=0.434  Sum_probs=28.8

Q ss_pred             hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHH
Q 012184          351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  398 (469)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~  398 (469)
                      .+.+.++.++..++..+.....+.+.++.++++.+..+.+++.++...
T Consensus       596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~  643 (769)
T PF05911_consen  596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA  643 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666666666666666666666655555555543

The function of this family is unknown.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.00  E-value=1.2  Score=41.64  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             HHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          362 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ..++.+.....+.+.+++.-+++.+-.++++.+++.++++++.++..++-|...++|..++.
T Consensus       222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~  283 (365)
T KOG2391|consen  222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA  283 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence            33556666777777888888888888888888888899999999888888888888744443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=91.99  E-value=1.2  Score=41.36  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=11.7

Q ss_pred             hhhcchhhHHHHHHHHHHHHHHhhhHH
Q 012184          383 EVNSTHSELSKELSSVQGQLVAERSRC  409 (469)
Q Consensus       383 ~~~~~~~e~~~el~~~~~~l~~~~~~~  409 (469)
                      .++..+..+++|-+.++.+|+..++.+
T Consensus       131 ~LE~li~~~~EEn~~lqlqL~~l~~e~  157 (401)
T PF06785_consen  131 HLEGLIRHLREENQCLQLQLDALQQEC  157 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            333344444444444444444444333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.97  E-value=1.4  Score=51.58  Aligned_cols=46  Identities=22%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ++++.+++..+.++..+++..+....+++....++..+++++++++
T Consensus      1096 ~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1096 QKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444444444444444443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=91.86  E-value=1.4  Score=38.52  Aligned_cols=21  Identities=38%  Similarity=0.409  Sum_probs=9.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHH
Q 012184          403 VAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       403 ~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      +-+++++..++.++.+++..+
T Consensus        83 ~lLrekl~~le~El~~Lr~~l  103 (202)
T PF06818_consen   83 ELLREKLGQLEAELAELREEL  103 (202)
T ss_pred             HHhhhhhhhhHHHHHHHHHHH
Confidence            333444444444444444443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PTZ00421 coronin; Provisional

Probab=91.71  E-value=17  Score=37.18  Aligned_cols=63  Identities=16%  Similarity=0.128  Sum_probs=35.0

Q ss_pred             EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      .+++.||.+.      .+.+||+.+..-...- . ....  .-.++....++.+++.|+.+     ..+.+||+.+..
T Consensus       139 ~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~-~h~~--~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~  201 (493)
T PTZ00421        139 NVLASAGADM------VVNVWDVERGKAVEVI-K-CHSD--QITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT  201 (493)
T ss_pred             CEEEEEeCCC------EEEEEECCCCeEEEEE-c-CCCC--ceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence            5666666543      3888998876532211 1 1111  11223333356677777654     358899988765

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.71  E-value=4.8  Score=36.85  Aligned_cols=30  Identities=20%  Similarity=0.360  Sum_probs=11.0

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQL  402 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l  402 (469)
                      +...+..++++.+.++.+...++.+++.++
T Consensus        60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI   89 (265)
T COG3883          60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEI   89 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=91.71  E-value=9.3  Score=34.42  Aligned_cols=138  Identities=18%  Similarity=0.217  Sum_probs=69.3

Q ss_pred             eEEEeecC--CCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc
Q 012184           90 LCGVMETS--GKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR  166 (469)
Q Consensus        90 ~W~~~~~~--g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~  166 (469)
                      -|+..++.  +..+.|-...-... -.|.|+..||-+       .+|..|+.+++.+..- .|   ..-+-|+++.-+.+
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~  168 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE-cC---CcceeeeeeecccC
Confidence            47666532  22333333322222 356788888643       3899999999987653 12   22334444442222


Q ss_pred             EEEEEecCCCCcccCcEEEEECCCCceEe-eeec--CCCCCCCcce--EEEEECCEEEEEecCCCCCCcceEEEEECCCC
Q 012184          167 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK--GDLVTGRAGH--AGITIDENWYIVGGGDNNNGCQETIVLNMTKL  241 (469)
Q Consensus       167 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~--~~~p~~r~~~--~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~  241 (469)
                      -=++.|+-++     .+-++|..|.+-.. +.+-  ..+..|-.+-  .+...+...+|+||+..      +-++++...
T Consensus       169 ~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrss  237 (325)
T KOG0649|consen  169 GQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSS  237 (325)
T ss_pred             cceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCC
Confidence            2445555443     35677877766433 2211  1122222332  34445677888888532      334555444


Q ss_pred             cEEEeccC
Q 012184          242 AWSILTSV  249 (469)
Q Consensus       242 ~W~~~~~~  249 (469)
                      .-+.+-++
T Consensus       238 e~t~vfpi  245 (325)
T KOG0649|consen  238 ESTCVFPI  245 (325)
T ss_pred             CceEEEec
Confidence            44444333

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=91.70  E-value=10  Score=34.48  Aligned_cols=119  Identities=11%  Similarity=0.102  Sum_probs=56.3

Q ss_pred             CCCcCeeeEEECCEEEEEccccCCCCCcce-EEEEE-----CCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC
Q 012184           51 PPMSDHCMVKWGTKLLILGGHYKKSSDSMI-VRFID-----LETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR  124 (469)
Q Consensus        51 ~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~-~~~~d-----~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~  124 (469)
                      ....-|+.+.+++.-|.+|=++++-....- +..|.     +....=+.++.  .....-+..++-.+++.||+.--...
T Consensus       134 ~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~  211 (367)
T PF12217_consen  134 AVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPS--EYERNASEPCVKYYDGVLYLTTRGTL  211 (367)
T ss_dssp             --SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--G--GG-TTEEEEEEEEETTEEEEEEEES-
T ss_pred             eeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEEcCcC
Confidence            356789999999999999866655432211 22221     11111122221  12222334445557999999854333


Q ss_pred             CCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184          125 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus       125 ~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      ....-+.+.+-+.....|..+.....  .-......+.+ ++.|||||--
T Consensus       212 ~~~~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakv-gD~l~mFgsE  258 (367)
T PF12217_consen  212 PTNPGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKV-GDVLYMFGSE  258 (367)
T ss_dssp             TTS---EEEEESSTTSS-EEEE-TT-----SS---EEEE-TTEEEEEEE-
T ss_pred             CCCCcceeeeecccCCchhhcccccc--ccccCCCceee-CCEEEEEecc
Confidence            33345668888888889999863211  11122233445 6679999863

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.68  E-value=15  Score=36.34  Aligned_cols=175  Identities=25%  Similarity=0.367  Sum_probs=88.5

Q ss_pred             EECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           60 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        60 ~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ..++.++++|+-+.      .+..+|..+.. ......|.--.-|++ ++...++.|++-|||+..      |-.||+.+
T Consensus       120 ~~d~t~l~s~sDd~------v~k~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~  185 (487)
T KOG0310|consen  120 PQDNTMLVSGSDDK------VVKYWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRS  185 (487)
T ss_pred             ccCCeEEEecCCCc------eEEEEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEecc
Confidence            34888999987432      14555665555 344433322222222 333456789999998864      66778776


Q ss_pred             C-eEEEeeeCCCCCCCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce--EEEEE-
Q 012184          140 M-TWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH--AGITI-  214 (469)
Q Consensus       140 ~-~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~--~~~~~-  214 (469)
                      . .|.. ..  +.-.|.  -.++.+.+ ..|...||       |.+-++|+.++        +.++..+..|  +++.+ 
T Consensus       186 ~~~~v~-el--nhg~pV--e~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~  245 (487)
T KOG0310|consen  186 LTSRVV-EL--NHGCPV--ESVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLR  245 (487)
T ss_pred             CCceeE-Ee--cCCCce--eeEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEEE
Confidence            6 4422 11  111121  12334444 33444444       56667666533        2333333323  22211 


Q ss_pred             ---CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184          215 ---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK  282 (469)
Q Consensus       215 ---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~  282 (469)
                         ++.-++.||.+.     .+-+||+  ..|+.+-.+.-+.|       +..+.+.+++.-+++|..|+.
T Consensus       246 l~s~~~rLlS~sLD~-----~VKVfd~--t~~Kvv~s~~~~~p-------vLsiavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  246 LASDSTRLLSGSLDR-----HVKVFDT--TNYKVVHSWKYPGP-------VLSIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             eecCCceEeeccccc-----ceEEEEc--cceEEEEeeecccc-------eeeEEecCCCceEEEecccce
Confidence               346677777644     3668884  44555544332222       122233345677778876653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.64  E-value=6.6  Score=39.16  Aligned_cols=146  Identities=15%  Similarity=0.090  Sum_probs=83.3

Q ss_pred             ceEEEEccCC-----ceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe
Q 012184           16 VVMVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL   90 (469)
Q Consensus        16 ~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~   90 (469)
                      .++.+|....     .|..+...                 ..-..+.+...++.+|+.-....   ....+..+++.+..
T Consensus       253 ~v~~~d~~~~~~~~~~~~~l~~~-----------------~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  253 EVYLLDLDDGGSPDAKPKLLSPR-----------------EDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPS  312 (414)
T ss_dssp             EEEEEECCCTTTSS-SEEEEEES-----------------SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTS
T ss_pred             eEEEEeccccCCCcCCcEEEeCC-----------------CCceEEEEEccCCEEEEeeCCCC---CCcEEEEecccccc
Confidence            7888888765     67777663                 12234445556999999865322   33458888888775


Q ss_pred             ---EE-EeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECC-CCeEEEeeeCCCCCCCCCCceEEEE--
Q 012184           91 ---CG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALH--  163 (469)
Q Consensus        91 ---W~-~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~--  163 (469)
                         |. .+.   +......--.+...+++|++.-=.+    ....+.++++. +..-..++      .+-.+......  
T Consensus       313 ~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~------~p~~g~v~~~~~~  379 (414)
T PF02897_consen  313 PAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLDDGKESREIP------LPEAGSVSGVSGD  379 (414)
T ss_dssp             GGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT-TEEEEEEE------SSSSSEEEEEES-
T ss_pred             cccceeEEc---CCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECCCCcEEeeec------CCcceEEeccCCC
Confidence               66 444   2222234455666788888874333    25679999988 33333332      22222212221  


Q ss_pred             -c-CcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184          164 -A-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       164 -~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                       . +...|.+.+..   ....+|.||+.+++.+.+.
T Consensus       380 ~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  380 FDSDELRFSYSSFT---TPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEEE
T ss_pred             CCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEEE
Confidence             1 23444554443   2357999999999877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.57  E-value=1.9  Score=46.98  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 012184          428 TIENEVQILRQQKSAFEQEMERATSVQTQGSGG  460 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~  460 (469)
                      +.+.|++++.+.++..++++++......|.+.|
T Consensus       444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~  476 (1293)
T KOG0996|consen  444 KCQTEIEQLEELLEKEERELDEILDSLKQETEG  476 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            455566666666666666665554444444433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.56  E-value=2.2  Score=43.09  Aligned_cols=38  Identities=11%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          404 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  441 (469)
Q Consensus       404 ~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~  441 (469)
                      ..+.++..++.+++++++++......+.+...++++.+
T Consensus       315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~  352 (444)
T TIGR03017       315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVE  352 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555554444444444444444444

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.54  E-value=6.7  Score=32.11  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHH
Q 012184          395 LSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       395 l~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      |..++.++...+..+..++.+..
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~   83 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAE   83 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=91.53  E-value=3  Score=35.91  Aligned_cols=52  Identities=13%  Similarity=0.159  Sum_probs=29.9

Q ss_pred             hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      .++..+++.|.+.+.+...++.++...+.+-++...+-.....+.+.|+.+.
T Consensus       112 AQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~  163 (192)
T PF11180_consen  112 AQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAER  163 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666667777777766666665555544444444444444433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=91.53  E-value=14  Score=35.82  Aligned_cols=169  Identities=16%  Similarity=0.162  Sum_probs=80.9

Q ss_pred             ceEEEEEC--CEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCC-ceEEEEcCcEEEEEecCCCCccc
Q 012184          106 GHSVTLVG--SRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGCSHSIFF  180 (469)
Q Consensus       106 ~~~~~~~~--~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~  180 (469)
                      -|.+..-.  ..+|+.. .     -.+.|+.|++....  ....... ..|..-.- |.+..-+..++|+..-.+     
T Consensus       146 ~H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----  213 (345)
T PF10282_consen  146 PHQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----  213 (345)
T ss_dssp             EEEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----
T ss_pred             ceeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----
Confidence            34444442  4677652 1     25678888887665  5442221 12221111 222222346899987543     


Q ss_pred             CcEEEEECC--CCceEeeeecCCCCC---CC-cceEEEEE--CCEEEEEecCCCCCCcceEEEEEC--CCCcEEEeccCC
Q 012184          181 NDLHVLDLQ--TNEWSQPEIKGDLVT---GR-AGHAGITI--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVK  250 (469)
Q Consensus       181 ~~i~~~d~~--~~~W~~~~~~~~~p~---~r-~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~~~~~~  250 (469)
                      +.+.+|++.  +..++.+......|.   .. ..+.++..  +..||+.-..     .+.+.+|++  .+...+.+...+
T Consensus       214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~  288 (345)
T PF10282_consen  214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVP  288 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEE
T ss_pred             CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEe
Confidence            566666665  666766554333322   22 22233333  3457776432     456777776  445665554432


Q ss_pred             --CCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184          251 --GRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK  301 (469)
Q Consensus       251 --~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~  301 (469)
                        +..|        ..+.+++ +.+|||.....+  .-.++..|.++..+....
T Consensus       289 ~~G~~P--------r~~~~s~~g~~l~Va~~~s~--~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  289 TGGKFP--------RHFAFSPDGRYLYVANQDSN--TVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             ESSSSE--------EEEEE-TTSSEEEEEETTTT--EEEEEEEETTTTEEEEEE
T ss_pred             CCCCCc--------cEEEEeCCCCEEEEEecCCC--eEEEEEEeCCCCcEEEec
Confidence              2222        1233444 456666544332  123444455666665443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.49  E-value=2.1  Score=45.52  Aligned_cols=11  Identities=18%  Similarity=0.607  Sum_probs=5.5

Q ss_pred             EEEEccccCCC
Q 012184           65 LLILGGHYKKS   75 (469)
Q Consensus        65 iy~~GG~~~~~   75 (469)
                      +.+++|.++.+
T Consensus        30 ~~~i~G~Ng~G   40 (650)
T TIGR03185        30 IILIGGLNGAG   40 (650)
T ss_pred             EEEEECCCCCC
Confidence            55555554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.46  E-value=2  Score=44.90  Aligned_cols=11  Identities=36%  Similarity=0.507  Sum_probs=4.0

Q ss_pred             HHHHHHhHHHH
Q 012184          353 IDAIKEDKRVL  363 (469)
Q Consensus       353 ~~~l~~~~~~~  363 (469)
                      +..+.++...+
T Consensus       301 ~~~l~d~i~~l  311 (562)
T PHA02562        301 ITKIKDKLKEL  311 (562)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.42  E-value=19  Score=37.19  Aligned_cols=113  Identities=11%  Similarity=-0.002  Sum_probs=59.6

Q ss_pred             ceEEEEccCC--ceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.+|..|+  .|+.-......       .. +...........++.+++||+...       ...++.+|..|++  |
T Consensus        80 ~v~AlDa~TGk~lW~~~~~~~~~-------~~-~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        80 RVYALDAKTGKELWKYDPKLPDD-------VI-PVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVW  144 (527)
T ss_pred             cEEEEECCCCceeeEecCCCCcc-------cc-cccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEe
Confidence            6899999876  48765432110       00 000011122334666888887432       1239999999887  7


Q ss_pred             EEeecCCCCCCC-CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184           92 GVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  146 (469)
Q Consensus        92 ~~~~~~g~~p~~-r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~  146 (469)
                      +.-..  ..... ....+-++.++.||+-.... .......++.||..|++  |+.-.
T Consensus       145 ~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       145 SKKNG--DYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             ecccc--cccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEeccC
Confidence            65431  11111 12233445677766542211 11134569999998875  76543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=91.40  E-value=2.9  Score=38.02  Aligned_cols=93  Identities=14%  Similarity=0.159  Sum_probs=46.8

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS-------KELSSVQGQLVAERSRCFKLEAQIAELQKMLES  425 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~-------~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~  425 (469)
                      ++.|+.+.++-+..+.+-..++..|+.++.-+++.=-|.+       --|++.+++++++++-++-++..+   -.+..-
T Consensus        70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL---~ekDkG  146 (305)
T PF15290_consen   70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL---AEKDKG  146 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---chhhhh
Confidence            5555555555555555555555666555555443211111       112223333333333333333333   333566


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Q 012184          426 SQTIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       426 ~~~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      +|+...++...-++++.+.+-.|
T Consensus       147 iQKYFvDINiQN~KLEsLLqsME  169 (305)
T PF15290_consen  147 IQKYFVDINIQNKKLESLLQSME  169 (305)
T ss_pred             HHHHHhhhhhhHhHHHHHHHHHH
Confidence            66777777777777777766554

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=91.39  E-value=11  Score=36.81  Aligned_cols=124  Identities=16%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             cCeeeEEECCEEEEE---ccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccC
Q 012184           54 SDHCMVKWGTKLLIL---GGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLN  130 (469)
Q Consensus        54 ~~~~~~~~~~~iy~~---GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~  130 (469)
                      ..++....++.+=+.   |-+...+...|++|.+|..-+.--++.  |-.|-.|. +++-.+++.+|++-=.     -++
T Consensus       378 n~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGklt--Gl~~gERI-YAvRf~gdv~yiVTfr-----qtD  449 (603)
T COG4880         378 NSFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLT--GLAPGERI-YAVRFVGDVLYIVTFR-----QTD  449 (603)
T ss_pred             hcccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEe--ccCCCceE-EEEEEeCceEEEEEEe-----ccC
Confidence            455555566655443   445556668899999998877655555  33344443 5556678888887422     255


Q ss_pred             cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC
Q 012184          131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  190 (469)
Q Consensus       131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~  190 (469)
                      -++..|+++-.  .+...|.+-.|-+..=+-.++++.++=+|-..++   -.+-.||++.
T Consensus       450 PlfviDlsNPe--nPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g~---vKiSLFdiSd  504 (603)
T COG4880         450 PLFVIDLSNPE--NPKVLGELKIPGFSEYLHPIGENRLLGVGAYQGG---VKISLFDISD  504 (603)
T ss_pred             ceEEEEcCCCC--CCceeEEEecCCchhhccccCCCcEEEeecccCC---ceEEEEeccC
Confidence            68888887643  2222233333332222334557766666654433   3566777653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=91.23  E-value=26  Score=38.37  Aligned_cols=60  Identities=20%  Similarity=0.340  Sum_probs=33.5

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEE-EeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++.+++.||.++      .+..||+.++.-. .+..       .....++.+   ++.+++.|+.+      +.+.+||+
T Consensus       587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~  647 (793)
T PLN00181        587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT-------KANICCVQFPSESGRSLAFGSAD------HKVYYYDL  647 (793)
T ss_pred             CCCEEEEEcCCC------EEEEEECCCCcEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEEC
Confidence            456777777543      2788888765422 2221       111222222   35677777644      35889998


Q ss_pred             CCC
Q 012184          138 ETM  140 (469)
Q Consensus       138 ~t~  140 (469)
                      .+.
T Consensus       648 ~~~  650 (793)
T PLN00181        648 RNP  650 (793)
T ss_pred             CCC
Confidence            764

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.22  E-value=3.4  Score=41.33  Aligned_cols=13  Identities=0%  Similarity=0.135  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 012184          435 ILRQQKSAFEQEM  447 (469)
Q Consensus       435 ~~~q~~~~~~~~~  447 (469)
                      ++++++...+.++
T Consensus       250 ~~~~~l~~~~~~l  262 (423)
T TIGR01843       250 EAQARLAELRERL  262 (423)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.20  E-value=10  Score=34.86  Aligned_cols=61  Identities=11%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184          129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      ...+++||+++..|.+.+..|.  .+| .+++-+...+++++.     ....+.|.+||+.+.+++.+.
T Consensus       253 ~g~l~rfdPs~~sW~eypLPgs--~ar-pys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p  313 (353)
T COG4257         253 TGSLHRFDPSVTSWIEYPLPGS--KAR-PYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLP  313 (353)
T ss_pred             CceeeEeCcccccceeeeCCCC--CCC-cceeeeccCCcEEee-----ccccCceeecCcccceEEEec
Confidence            4578999999999999854332  222 234444434555552     233578999999999998863

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.16  E-value=2.2  Score=45.49  Aligned_cols=46  Identities=13%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      +.+++++++.++.+++.+++.+.+++...+.++.+++..+.+++++
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~  252 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK  252 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.14  E-value=1.3  Score=38.75  Aligned_cols=31  Identities=10%  Similarity=0.208  Sum_probs=11.3

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHHHHh
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQLVAE  405 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~  405 (469)
                      ..|..++.+++....+.+.++..++.++..+
T Consensus       152 eeL~~eleele~e~ee~~erlk~le~E~s~L  182 (290)
T COG4026         152 EELLKELEELEAEYEEVQERLKRLEVENSRL  182 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=91.07  E-value=1.3  Score=42.58  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184          392 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  424 (469)
Q Consensus       392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~  424 (469)
                      +++++++|+.|.+++++-.....+...|++++.
T Consensus       258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~  290 (575)
T KOG4403|consen  258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD  290 (575)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence            344555555555544443333333333444433

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.06  E-value=5.2  Score=30.87  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=26.2

Q ss_pred             hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ...+.......|+..++..+....++.++..+++..++.+++.-....+.+.||+.++
T Consensus        10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki   67 (107)
T PF09304_consen   10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI   67 (107)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444555555555555555555544444444444444444444444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=91.03  E-value=3  Score=40.76  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=19.3

Q ss_pred             hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhh
Q 012184          372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  407 (469)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~  407 (469)
                      +..+.|+.-++..+..++|.+.+.+-++.++.+.+.
T Consensus       390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~  425 (527)
T PF15066_consen  390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA  425 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            334444445555555555555555556666655543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.99  E-value=2.4  Score=45.24  Aligned_cols=11  Identities=18%  Similarity=0.277  Sum_probs=5.7

Q ss_pred             ceEEEEccCCc
Q 012184           16 VVMVFDLRSLA   26 (469)
Q Consensus        16 ~~~~~d~~~~~   26 (469)
                      +++++|.....
T Consensus        43 ~L~vWd~~e~~   53 (717)
T PF10168_consen   43 DLFVWDSSECC   53 (717)
T ss_pred             EEEEEECCCCE
Confidence            45555555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.96  E-value=6.4  Score=35.80  Aligned_cols=98  Identities=17%  Similarity=0.173  Sum_probs=58.5

Q ss_pred             EEEcccCCCcccCCceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            2 LLRCSIRNYTLLEGVVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         2 ~~~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      |++-|.+.+     .|...|+.++.  |+.+-                   ..|...++.++|+. .++|-+. ..    
T Consensus        25 ~v~igSHs~-----~~~avd~~sG~~~We~il-------------------g~RiE~sa~vvgdf-VV~GCy~-g~----   74 (354)
T KOG4649|consen   25 LVVIGSHSG-----IVIAVDPQSGNLIWEAIL-------------------GVRIECSAIVVGDF-VVLGCYS-GG----   74 (354)
T ss_pred             EEEEecCCc-----eEEEecCCCCcEEeehhh-------------------CceeeeeeEEECCE-EEEEEcc-Cc----
Confidence            344454444     56778998875  76543                   37888888889988 4444333 22    


Q ss_pred             eEEEEECCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           80 IVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        80 ~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                       +|.++..|+.  |......     .....+.+..++-+.++|-.+.      ..|.+|+.+..
T Consensus        75 -lYfl~~~tGs~~w~f~~~~-----~vk~~a~~d~~~glIycgshd~------~~yalD~~~~~  126 (354)
T KOG4649|consen   75 -LYFLCVKTGSQIWNFVILE-----TVKVRAQCDFDGGLIYCGSHDG------NFYALDPKTYG  126 (354)
T ss_pred             -EEEEEecchhheeeeeehh-----hhccceEEcCCCceEEEecCCC------cEEEecccccc
Confidence             8888888873  7665421     1112222334455555665443      27888888765

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.93  E-value=3.5  Score=43.79  Aligned_cols=29  Identities=21%  Similarity=0.481  Sum_probs=17.7

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184          424 ESSQTIENEVQILRQQKSAFEQEMERATS  452 (469)
Q Consensus       424 ~~~~~~e~e~~~~~q~~~~~~~~~~~~~~  452 (469)
                      +.++.|+.|++-+....+.++-.+|=+..
T Consensus       325 ERaesLQ~eve~lkEr~deletdlEILKa  353 (1243)
T KOG0971|consen  325 ERAESLQQEVEALKERVDELETDLEILKA  353 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44446777777777776666666654433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.84  E-value=15  Score=34.84  Aligned_cols=183  Identities=13%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             cCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCc
Q 012184           54 SDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        54 ~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~  131 (469)
                      ..+.+..+ ++.++++|..       ..+|+=.=.-.+|+.+...   +.. .-..+... ++.+++++..+.       
T Consensus       105 s~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~---~~g-s~~~~~r~~dG~~vavs~~G~-------  166 (302)
T PF14870_consen  105 SPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSE---TSG-SINDITRSSDGRYVAVSSRGN-------  166 (302)
T ss_dssp             -EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTSS-------
T ss_pred             CeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccC---Ccc-eeEeEEECCCCcEEEEECccc-------
Confidence            33444444 6677777542       1255544445579988731   221 22222223 456666654322       


Q ss_pred             EE-EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEE--CCCCceEeeeecCCCCCCCcc
Q 012184          132 VH-FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD--LQTNEWSQPEIKGDLVTGRAG  208 (469)
Q Consensus       132 v~-~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d--~~~~~W~~~~~~~~~p~~r~~  208 (469)
                      ++ ..|+-...|....    .+..|.-.++....++.|+++. .+.     .+..-+  -...+|.+...  +.....++
T Consensus       167 ~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~--~~~~~~~~  234 (302)
T PF14870_consen  167 FYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPII--PIKTNGYG  234 (302)
T ss_dssp             EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B---TTSS--S-
T ss_pred             EEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccC--CcccCcee
Confidence            43 4577777898874    3456666677766677788866 222     233333  23456887431  22233333


Q ss_pred             e-EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEec
Q 012184          209 H-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG  278 (469)
Q Consensus       209 ~-~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG  278 (469)
                      + .++.. ++.+++.||.      ..+++=.-.-++|.+..... ..|.  .-+.+..   .+.++-+|+|.
T Consensus       235 ~ld~a~~~~~~~wa~gg~------G~l~~S~DgGktW~~~~~~~-~~~~--n~~~i~f---~~~~~gf~lG~  294 (302)
T PF14870_consen  235 ILDLAYRPPNEIWAVGGS------GTLLVSTDGGKTWQKDRVGE-NVPS--NLYRIVF---VNPDKGFVLGQ  294 (302)
T ss_dssp             EEEEEESSSS-EEEEEST------T-EEEESSTTSS-EE-GGGT-TSSS-----EEEE---EETTEEEEE-S
T ss_pred             eEEEEecCCCCEEEEeCC------ccEEEeCCCCccceECcccc-CCCC--ceEEEEE---cCCCceEEECC
Confidence            3 33443 4678888883      23444444567899865322 2221  1122222   22468888885

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=90.83  E-value=2.9  Score=42.46  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ++.++-++-.++..++-+..-+|++.-|.++++
T Consensus       172 LETqKlDLmaevSeLKLkltalEkeq~e~E~K~  204 (861)
T KOG1899|consen  172 LETQKLDLMAEVSELKLKLTALEKEQNETEKKL  204 (861)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence            333333333333333444444443333333333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=90.81  E-value=7.5  Score=33.67  Aligned_cols=67  Identities=19%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             hcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184          385 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML---------ESSQTIENEVQILRQQKSAFEQEMERAT  451 (469)
Q Consensus       385 ~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l---------~~~~~~e~e~~~~~q~~~~~~~~~~~~~  451 (469)
                      +..+.+....+..++.++...+.....+.....+++.+.         ........+++++++.+...++..+.++
T Consensus        97 ~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~  172 (177)
T PF13870_consen   97 KQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILE  172 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444444544441         1223344555566666666666655443

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=90.73  E-value=3.2  Score=36.68  Aligned_cols=57  Identities=19%  Similarity=0.290  Sum_probs=25.5

Q ss_pred             chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184          387 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE  446 (469)
Q Consensus       387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~  446 (469)
                      +.+|++.++.++.++.+.++.+++-|+++-.-|   +-+.+++..++++++|.+..+.++
T Consensus        91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L---~~~n~el~~~le~~~~~l~~~~~~  147 (292)
T KOG4005|consen   91 RMEEMEYEIKDLTEENEILQNENDSLRAINESL---LAKNHELDSELELLRQELAELKQQ  147 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHhhHHH
Confidence            334445555555555555444444444332211   222234455555555555544433

>PF15233 SYCE1: Synaptonemal complex central element protein 1

Probab=90.69  E-value=7.2  Score=31.14  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184          347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA  414 (469)
Q Consensus       347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~  414 (469)
                      +++..++..++.-+....+.+.+++.-.+.|+++++.+..+..-++.-+...+.-+..++-.|++.+.
T Consensus         9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~   76 (134)
T PF15233_consen    9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKES   76 (134)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666777777777777888888888776666665566555555555555544443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=90.66  E-value=7.7  Score=36.34  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHH
Q 012184          410 FKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       410 ~~~~~~~~e~~~~l~~~~-----~~e~e~~~~~q~~~~~~~~~  447 (469)
                      .++..+..+++..+...|     +|.+.+..+..++.....++
T Consensus       116 ~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~l  158 (310)
T PF09755_consen  116 NQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEEL  158 (310)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            333333334444444333     34445554444333333333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=90.58  E-value=30  Score=37.92  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=79.4

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      +..||..++.-...-   ... ...-.+++..  ++.+++.||.+.      .+.+||+.+..-...-. .     ....
T Consensus       557 v~lWd~~~~~~~~~~---~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~-~-----~~~v  620 (793)
T PLN00181        557 VQVWDVARSQLVTEM---KEH-EKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIGTIK-T-----KANI  620 (793)
T ss_pred             EEEEECCCCeEEEEe---cCC-CCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEEEEe-c-----CCCe
Confidence            778888776532221   111 1111222222  356777777543      38888887654322110 0     1111


Q ss_pred             eEEEE--cCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEE
Q 012184          159 SAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  234 (469)
Q Consensus       159 ~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~  234 (469)
                      ..+.+  .++.++++|+.+     +.|++||+.+..  ...+.  + ...  .-..+...++..++.|+.++     .+-
T Consensus       621 ~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~--~-h~~--~V~~v~f~~~~~lvs~s~D~-----~ik  685 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMI--G-HSK--TVSYVRFVDSSTLVSSSTDN-----TLK  685 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEec--C-CCC--CEEEEEEeCCCEEEEEECCC-----EEE
Confidence            22222  245677777654     468899986543  11111  1 011  11122233556666666432     366


Q ss_pred             EEECCCC----cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          235 VLNMTKL----AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       235 ~~d~~~~----~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      +||+...    .|..+..+.+..      .....+...+.+.+++.|+.++    .+.+|+..
T Consensus       686 iWd~~~~~~~~~~~~l~~~~gh~------~~i~~v~~s~~~~~lasgs~D~----~v~iw~~~  738 (793)
T PLN00181        686 LWDLSMSISGINETPLHSFMGHT------NVKNFVGLSVSDGYIATGSETN----EVFVYHKA  738 (793)
T ss_pred             EEeCCCCccccCCcceEEEcCCC------CCeeEEEEcCCCCEEEEEeCCC----EEEEEECC
Confidence            7776532    233222222111      0111222333456777887655    46777754

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.45  E-value=1.5  Score=45.13  Aligned_cols=38  Identities=32%  Similarity=0.377  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012184          413 EAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       413 ~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      ++.++++....+.....+..++++..+++.+.++++++
T Consensus       145 ~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ra  182 (916)
T KOG0249|consen  145 AQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRA  182 (916)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=90.44  E-value=7.3  Score=34.23  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH
Q 012184          392 SKELSSVQGQLVAERSRCFKLEAQ  415 (469)
Q Consensus       392 ~~el~~~~~~l~~~~~~~~~~~~~  415 (469)
                      .+++..++..++....++..|+.+
T Consensus       124 ~~kL~~~~~~l~~~~~ki~~Lek~  147 (194)
T PF15619_consen  124 QRKLSQLEQKLQEKEKKIQELEKQ  147 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444434444444333

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=90.43  E-value=3.2  Score=39.51  Aligned_cols=20  Identities=5%  Similarity=0.300  Sum_probs=11.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~  447 (469)
                      .|.+|+++..++++++.-++
T Consensus       360 ~L~keLeekkreleql~~q~  379 (442)
T PF06637_consen  360 SLAKELEEKKRELEQLKMQL  379 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666555554

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.35  E-value=3.6  Score=47.67  Aligned_cols=7  Identities=29%  Similarity=0.582  Sum_probs=2.9

Q ss_pred             EEEEecc
Q 012184          116 LIIFGGE  122 (469)
Q Consensus       116 lyi~GG~  122 (469)
                      +.++|+.
T Consensus        30 ~~l~G~N   36 (1486)
T PRK04863         30 TTLSGGN   36 (1486)
T ss_pred             EEEECCC
Confidence            3444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.33  E-value=4.8  Score=38.48  Aligned_cols=17  Identities=35%  Similarity=0.350  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012184          432 EVQILRQQKSAFEQEME  448 (469)
Q Consensus       432 e~~~~~q~~~~~~~~~~  448 (469)
                      +.+++...+-+++.|+.
T Consensus       284 ey~~Ll~~K~~Ld~EIa  300 (312)
T PF00038_consen  284 EYQELLDVKLALDAEIA  300 (312)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHH
Confidence            33444444444444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PTZ00420 coronin; Provisional

Probab=90.31  E-value=25  Score=36.60  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=32.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEE-EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      +..+++.||.+.      .+..+|+.++.=. .+.    .+.   ...++.+  ++.+++.++.+      ..+.+||+.
T Consensus       137 g~~iLaSgS~Dg------tIrIWDl~tg~~~~~i~----~~~---~V~SlswspdG~lLat~s~D------~~IrIwD~R  197 (568)
T PTZ00420        137 NYYIMCSSGFDS------FVNIWDIENEKRAFQIN----MPK---KLSSLKWNIKGNLLSGTCVG------KHMHIIDPR  197 (568)
T ss_pred             CCeEEEEEeCCC------eEEEEECCCCcEEEEEe----cCC---cEEEEEECCCCCEEEEEecC------CEEEEEECC
Confidence            345566666432      3788888876521 111    111   1122223  46677666533      248899998


Q ss_pred             CCe
Q 012184          139 TMT  141 (469)
Q Consensus       139 t~~  141 (469)
                      +..
T Consensus       198 sg~  200 (568)
T PTZ00420        198 KQE  200 (568)
T ss_pred             CCc
Confidence            765

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.30  E-value=5.3  Score=36.25  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=14.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHH
Q 012184          424 ESSQTIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       424 ~~~~~~e~e~~~~~q~~~~~~~~~  447 (469)
                      .+++.|++|+-.+.-++++..++.
T Consensus       109 kqie~Leqelkr~KsELErsQ~~~  132 (307)
T PF10481_consen  109 KQIEKLEQELKRCKSELERSQQAA  132 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445566666666666666555544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=90.16  E-value=5.5  Score=36.66  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=10.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhh
Q 012184          405 ERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       405 ~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      +..++.+...+++-.+++|+.+|
T Consensus       195 Le~KIekkk~ELER~qKRL~sLq  217 (267)
T PF10234_consen  195 LEAKIEKKKQELERNQKRLQSLQ  217 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444445555555

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=90.06  E-value=8.2  Score=38.28  Aligned_cols=88  Identities=13%  Similarity=0.094  Sum_probs=50.4

Q ss_pred             cEEEEECCCC----ceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCC
Q 012184          182 DLHVLDLQTN----EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS  257 (469)
Q Consensus       182 ~i~~~d~~~~----~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r  257 (469)
                      -+..||....    .|...     ...|..+-+++..+..|++.=|++     ..+++||+....-+..-  .       
T Consensus       188 ~VtlwDv~g~sp~~~~~~~-----HsAP~~gicfspsne~l~vsVG~D-----kki~~yD~~s~~s~~~l--~-------  248 (673)
T KOG4378|consen  188 AVTLWDVQGMSPIFHASEA-----HSAPCRGICFSPSNEALLVSVGYD-----KKINIYDIRSQASTDRL--T-------  248 (673)
T ss_pred             eEEEEeccCCCcccchhhh-----ccCCcCcceecCCccceEEEeccc-----ceEEEeeccccccccee--e-------
Confidence            4667776543    35542     234455556666788888888864     36899999765433221  1       


Q ss_pred             CCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          258 EGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       258 ~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      +.|-+..+...+++.+++.|-..|    .++.||+
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G----~~i~YD~  279 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKG----ELIAYDM  279 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCc----eEEEEec
Confidence            122222333344667777776554    3666665

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=90.04  E-value=6  Score=31.91  Aligned_cols=37  Identities=14%  Similarity=0.293  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      +.+.++.+..++.+..+.....+.++.+++..+....
T Consensus        66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~  102 (126)
T PF07889_consen   66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG  102 (126)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4445555555555555555555555555555444443

The region featured in this family is approximately 100 amino acids long.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=90.01  E-value=1.7  Score=38.32  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=9.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhh
Q 012184          405 ERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       405 ~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      ..++...++.++++.+++|+..+
T Consensus       156 ~~~~~~kL~~el~~~~~~Le~~~  178 (216)
T KOG1962|consen  156 LKADLEKLETELEKKQKKLEKAQ  178 (216)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433333

>PRK13684 Ycf48-like protein; Provisional

Probab=90.01  E-value=19  Score=34.76  Aligned_cols=139  Identities=10%  Similarity=0.062  Sum_probs=68.1

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE-ECCCCeEEEeeeCCCCCCCCCCce
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DLETMTWDAVEVTQTPPAPRYDHS  159 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~-d~~t~~W~~~~~~g~~p~~r~~~~  159 (469)
                      +++-+=.-.+|..+.+    +..-.-+.+....+..|+..|...      .++.- |....+|+.+..    +..+.-++
T Consensus       154 i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~----~~~~~l~~  219 (334)
T PRK13684        154 IYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR----NSSRRLQS  219 (334)
T ss_pred             EEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC----CCccccee
Confidence            4443334568998862    222233444444444444433222      13332 334467988742    34455556


Q ss_pred             EEEEcCcEEEEEecCCCCcccCcEEEEE-C-CCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEE
Q 012184          160 AALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      +....++.++++|..+       ..++. . .-.+|+.+.. +........++++.. ++.++++|..      .-++.-
T Consensus       220 i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~------G~v~~S  285 (334)
T PRK13684        220 MGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGN------GTLLVS  285 (334)
T ss_pred             eeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCC------CeEEEe
Confidence            5555567788887532       12232 2 2347987531 111111223334444 4568887652      123333


Q ss_pred             ECCCCcEEEec
Q 012184          237 NMTKLAWSILT  247 (469)
Q Consensus       237 d~~~~~W~~~~  247 (469)
                      .-.-.+|..+.
T Consensus       286 ~d~G~tW~~~~  296 (334)
T PRK13684        286 KDGGKTWEKDP  296 (334)
T ss_pred             CCCCCCCeECC
Confidence            33456899864

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.00  E-value=4.1  Score=37.37  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=12.2

Q ss_pred             hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHH
Q 012184          367 LTEVRTENSRFREKIDEVNSTHSELSKELSSV  398 (469)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~  398 (469)
                      +.....+..+.+..+.+.+..+..++.+++..
T Consensus        14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~a   45 (246)
T PF00769_consen   14 LRQMEEEMRRAQEALEESEETAEELEEKLKQA   45 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333433333333333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=89.98  E-value=2.8  Score=30.73  Aligned_cols=70  Identities=19%  Similarity=0.304  Sum_probs=35.7

Q ss_pred             hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  441 (469)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~  441 (469)
                      .+...+.+...+-+++...+....+.+..+..--.+++..+.++.+|+....      ...++.|.|+..+..+++
T Consensus         5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~------kmK~~YEeEI~rLr~eLe   74 (79)
T PF08581_consen    5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR------KMKQQYEEEIARLRRELE   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555555555554432      222345566655555544

; PDB: 3VP9_B 3VP8_B.

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=89.96  E-value=3.2  Score=41.52  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=15.2

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 012184          398 VQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN  431 (469)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~  431 (469)
                      .+.+++.++.....|+.|.|-|+++....+.||.
T Consensus       644 ERee~eRl~~erlrle~qRQrLERErmErERLEr  677 (940)
T KOG4661|consen  644 EREELERLKAERLRLERQRQRLERERMERERLER  677 (940)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555544444444443433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.95  E-value=5.1  Score=42.53  Aligned_cols=8  Identities=0%  Similarity=0.177  Sum_probs=3.5

Q ss_pred             eccCCCCC
Q 012184          246 LTSVKGRN  253 (469)
Q Consensus       246 ~~~~~~~~  253 (469)
                      ||.+|...
T Consensus       254 IP~LP~~~  261 (980)
T KOG0980|consen  254 IPTLPEDA  261 (980)
T ss_pred             CCCCCCCC
Confidence            44444443

>PF15556 Zwint: ZW10 interactor

Probab=89.86  E-value=7.6  Score=33.53  Aligned_cols=17  Identities=24%  Similarity=0.350  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012184          431 NEVQILRQQKSAFEQEM  447 (469)
Q Consensus       431 ~e~~~~~q~~~~~~~~~  447 (469)
                      +|++.+.|++..++++.
T Consensus       155 qeLe~l~qeL~~lkqQa  171 (252)
T PF15556_consen  155 QELERLYQELGTLKQQA  171 (252)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.86  E-value=21  Score=34.99  Aligned_cols=139  Identities=13%  Similarity=0.052  Sum_probs=73.3

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCC--eE
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LC   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W   91 (469)
                      .++.+|+.+++  |+......               . ....--....+++||+-.. ..      .+++||..++  .|
T Consensus        79 ~i~A~d~~~g~~~W~~~~~~~---------------~-~~~~~~~~~~~G~i~~g~~-~g------~~y~ld~~~G~~~W  135 (370)
T COG1520          79 NIFALNPDTGLVKWSYPLLGA---------------V-AQLSGPILGSDGKIYVGSW-DG------KLYALDASTGTLVW  135 (370)
T ss_pred             cEEEEeCCCCcEEecccCcCc---------------c-eeccCceEEeCCeEEEecc-cc------eEEEEECCCCcEEE
Confidence            68899999877  86555420               0 0011111112677666533 22      4999999655  48


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC--eEEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLI  169 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~  169 (469)
                      ..-...   . .+....++..++.+|+--       ..+.++.+|..++  .|..-...+ .+....+..+  +.++.+|
T Consensus       136 ~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~--~~~~~vy  201 (370)
T COG1520         136 SRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA--IASGTVY  201 (370)
T ss_pred             EEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCce--eecceEE
Confidence            776532   1 333333444445555532       2455889988865  577544222 2222222222  4466555


Q ss_pred             EEecCCCCcccCcEEEEECCCCc--eEe
Q 012184          170 VFGGCSHSIFFNDLHVLDLQTNE--WSQ  195 (469)
Q Consensus       170 v~GG~~~~~~~~~i~~~d~~~~~--W~~  195 (469)
                      +- ..+  . ...++.+|+.+++  |..
T Consensus       202 ~~-~~~--~-~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         202 VG-SDG--Y-DGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             Ee-cCC--C-cceEEEEEccCCcEeeee
Confidence            53 222  1 2368999997654  874

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=89.82  E-value=2.9  Score=42.38  Aligned_cols=42  Identities=19%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          402 LVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF  443 (469)
Q Consensus       402 l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~  443 (469)
                      .+..+.++..++.+++.++.++...-+++.++.+++++.+..
T Consensus       344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~  385 (458)
T COG3206         344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAA  385 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHH
Confidence            333445555555555555555554445555555555555533

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=89.76  E-value=15  Score=33.41  Aligned_cols=117  Identities=14%  Similarity=0.228  Sum_probs=56.0

Q ss_pred             CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCC--cceEEEEECCEEEEEeccCCCC------
Q 012184           55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR--GGHSVTLVGSRLIIFGGEDRSR------  126 (469)
Q Consensus        55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r--~~~~~~~~~~~lyi~GG~~~~~------  126 (469)
                      ..++-..++.||+.--.+.....-+.+.+-+..-..|+.+.    .|...  .....+.+++.||+||-....+      
T Consensus       193 EPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~  268 (367)
T PF12217_consen  193 EPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGE  268 (367)
T ss_dssp             EEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE-SSTT-SSTT-
T ss_pred             cchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccccccCCCceeeCCEEEEEeccccccccccCC
Confidence            34455669999998644444345566888888888899986    34332  2233556799999998642110      


Q ss_pred             ---Cc---cCcEEE-------EECCCCeEEEeee---CCCCCCCCCCceEEEEcCcEE-EEEecCC
Q 012184          127 ---KL---LNDVHF-------LDLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS  175 (469)
Q Consensus       127 ---~~---~~~v~~-------~d~~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~~l-~v~GG~~  175 (469)
                         .+   ....+.       ++++.-.|..++.   .|..-..-.+-..+++.|+.| |+|||-+
T Consensus       269 ~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED  334 (367)
T PF12217_consen  269 PDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED  334 (367)
T ss_dssp             ----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred             CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence               01   112222       2344556766653   132222333344455557766 5899864

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=89.62  E-value=9.2  Score=34.90  Aligned_cols=28  Identities=14%  Similarity=0.290  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          393 KELSSVQGQLVAERSRCFKLEAQIAELQ  420 (469)
Q Consensus       393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~  420 (469)
                      ..+..+..++.....+....++.+..|+
T Consensus       176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le  203 (237)
T PF00261_consen  176 EKIRDLEEKLKEAENRAEFAERRVKKLE  203 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344344333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=89.56  E-value=1.7  Score=37.72  Aligned_cols=7  Identities=14%  Similarity=0.045  Sum_probs=3.6

Q ss_pred             EEEEECC
Q 012184          287 VFVMRLK  293 (469)
Q Consensus       287 ~~~~d~~  293 (469)
                      ..-||++
T Consensus        37 ~i~Ydl~   43 (195)
T PF12761_consen   37 QIDYDLN   43 (195)
T ss_pred             CcCcccc
Confidence            3445555

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=89.53  E-value=7.2  Score=35.03  Aligned_cols=39  Identities=15%  Similarity=0.325  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184          415 QIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSV  453 (469)
Q Consensus       415 ~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~~~~  453 (469)
                      -++||.+..+.++    -|++++.+-+.++++++..+++..++
T Consensus       265 fm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa  307 (330)
T KOG2991|consen  265 FMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA  307 (330)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444    37777777777777777777655444

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=89.50  E-value=3.8  Score=44.69  Aligned_cols=25  Identities=20%  Similarity=0.114  Sum_probs=10.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184          423 LESSQTIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       423 l~~~~~~e~e~~~~~q~~~~~~~~~  447 (469)
                      ++.++.||.+...-+|.++..+.++
T Consensus      1709 l~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            3444444433333334443333333

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=89.49  E-value=4.8  Score=36.02  Aligned_cols=16  Identities=25%  Similarity=0.347  Sum_probs=7.2

Q ss_pred             HHHHHHhHHHHhhhhh
Q 012184          353 IDAIKEDKRVLELSLT  368 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~  368 (469)
                      +.+++.+.+.++...+
T Consensus        54 L~q~etrnrdl~t~nq   69 (333)
T KOG1853|consen   54 LDQLETRNRDLETRNQ   69 (333)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4445444444443333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=89.39  E-value=6  Score=38.81  Aligned_cols=60  Identities=13%  Similarity=0.148  Sum_probs=29.7

Q ss_pred             HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184          354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  413 (469)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~  413 (469)
                      ..|++..+++-+..=.+..+...+.+.++.+++.+...++.|++.+.+...++-++.++.
T Consensus       365 nkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k  424 (527)
T PF15066_consen  365 NKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK  424 (527)
T ss_pred             HHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            333444333333333333344445555555555555566666666555555555555543

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=89.26  E-value=10  Score=32.73  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=24.1

Q ss_pred             hhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          364 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       364 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      +..+.........+..++.+++....+.++.+..+....++..++...++.++
T Consensus        17 eeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qL   69 (205)
T KOG1003|consen   17 EEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQL   69 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33333333334444445555554444555555444444444444444444433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=89.23  E-value=18  Score=33.46  Aligned_cols=192  Identities=18%  Similarity=0.164  Sum_probs=84.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.+|+.++..      ..+..||+.+..-....     +....-.+++. -++.+++++...     .+.++.||+.+.
T Consensus        84 g~~l~~~~~~~------~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~  147 (300)
T TIGR03866        84 GKILYIANEDD------NLVTVIDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTY  147 (300)
T ss_pred             CCEEEEEcCCC------CeEEEEECCCCeEEeEe-----eCCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCCCC
Confidence            44566665422      24889999876522211     11111122222 245666665432     223667788776


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeec--CCCCCCCcceEEEEE-CC
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK--GDLVTGRAGHAGITI-DE  216 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~--~~~p~~r~~~~~~~~-~~  216 (469)
                      .-......+..  +   ..+....++..+++++..    .+.+.+||+.+.+... +...  +..+.......++.. ++
T Consensus       148 ~~~~~~~~~~~--~---~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       148 EIVDNVLVDQR--P---RFAEFTADGKELWVSSEI----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             eEEEEEEcCCC--c---cEEEECCCCCEEEEEcCC----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence            54322111111  1   122222244444444321    1468899998765422 2111  111111111222222 23


Q ss_pred             -EEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCC
Q 012184          217 -NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       217 -~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                       .+|+..+.     .+.+.+||..+..-  +......       +....+...+ +.+||+..+.+    +++.+||+.+
T Consensus       219 ~~~~~~~~~-----~~~i~v~d~~~~~~--~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~----~~i~v~d~~~  280 (300)
T TIGR03866       219 KTAFVALGP-----ANRVAVVDAKTYEV--LDYLLVG-------QRVWQLAFTPDEKYLLTTNGVS----NDVSVIDVAA  280 (300)
T ss_pred             CEEEEEcCC-----CCeEEEEECCCCcE--EEEEEeC-------CCcceEEECCCCCEEEEEcCCC----CeEEEEECCC
Confidence             44554332     23588899875443  2221111       1111222333 34555444433    3588999876


Q ss_pred             CC
Q 012184          295 RD  296 (469)
Q Consensus       295 ~~  296 (469)
                      ..
T Consensus       281 ~~  282 (300)
T TIGR03866       281 LK  282 (300)
T ss_pred             Cc
Confidence            43

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=89.12  E-value=3.9  Score=44.18  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          410 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAF  443 (469)
Q Consensus       410 ~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~  443 (469)
                      ..+++++++++++....-+.|+++.+++++.+..
T Consensus       349 ~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~  382 (726)
T PRK09841        349 QTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAG  382 (726)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3344444444444444445555555555555433

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=89.07  E-value=5.3  Score=43.56  Aligned_cols=17  Identities=29%  Similarity=0.231  Sum_probs=10.1

Q ss_pred             hhcccccccCccccccc
Q 012184          320 ALAKSEKLDIPKTLSSK  336 (469)
Q Consensus       320 ~~gg~~~~~~~~~~~~~  336 (469)
                      .+||..+...++++...
T Consensus       354 SLGGkTKT~iIATiSPa  370 (1041)
T KOG0243|consen  354 SLGGKTKTCIIATISPA  370 (1041)
T ss_pred             HhCCCceeEEEEEeCCC
Confidence            46776666666555544

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=89.07  E-value=6.2  Score=28.58  Aligned_cols=19  Identities=21%  Similarity=0.476  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 012184          432 EVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       432 e~~~~~q~~~~~~~~~~~~  450 (469)
                      ++..+..+++..+.+++.+
T Consensus        48 ~~~~l~~~~~~~e~~~~~l   66 (74)
T PF12329_consen   48 QIKELKKKLEELEKELESL   66 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.01  E-value=28  Score=35.29  Aligned_cols=192  Identities=16%  Similarity=0.140  Sum_probs=90.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      .+.+++.|+.++.      |..+|+.+++-...-     ......-+++.+  ++.+++.+.++      ..+.+||+.+
T Consensus       257 ~g~~i~Sgs~D~t------vriWd~~~~~~~~~l-----~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~  319 (456)
T KOG0266|consen  257 DGNLLVSGSDDGT------VRIWDVRTGECVRKL-----KGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLET  319 (456)
T ss_pred             CCCEEEEecCCCc------EEEEeccCCeEEEee-----eccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCC
Confidence            4478888875542      888899886543332     122223333333  45666666442      3488999888


Q ss_pred             CeEE--EeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184          140 MTWD--AVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D  215 (469)
Q Consensus       140 ~~W~--~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~  215 (469)
                      ..-.  ..-.  ....+. -...+.+ .++ .|++.+...    +.+-.+|+....-.... .+..-..++.+..+.. +
T Consensus       320 ~~~~~~~~~~--~~~~~~-~~~~~~fsp~~-~~ll~~~~d----~~~~~w~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  320 GSKLCLKLLS--GAENSA-PVTSVQFSPNG-KYLLSASLD----RTLKLWDLRSGKSVGTY-TGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             Cceeeeeccc--CCCCCC-ceeEEEECCCC-cEEEEecCC----CeEEEEEccCCcceeee-cccCCcceeEecccccCC
Confidence            7732  1111  111221 2233333 344 444444332    24556666554322211 1111112455555544 3


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      +.+++.|+.     ...+..+|+.+..  .+..+.+..     -.............++++++.+....-.+|.++
T Consensus       391 ~~~i~sg~~-----d~~v~~~~~~s~~--~~~~l~~h~-----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  391 GKLIYSGSE-----DGSVYVWDSSSGG--ILQRLEGHS-----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCeEEEEeC-----CceEEEEeCCccc--hhhhhcCCC-----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            445555553     2357888887632  122222211     011112222335567777776554444455443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=88.99  E-value=27  Score=35.05  Aligned_cols=140  Identities=8%  Similarity=-0.006  Sum_probs=69.1

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      ..+|.+|..++...++...   . .......-.-++ .|++.....    ....+|.++..+.....+...+     .+.
T Consensus       264 ~~Iy~~d~~~~~~~~lt~~---~-~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~g-----~~~  330 (427)
T PRK02889        264 SQIYTVNADGSGLRRLTQS---S-GIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFTG-----SYN  330 (427)
T ss_pred             ceEEEEECCCCCcEECCCC---C-CCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCCceEEEecCC-----CCc
Confidence            4599999988876666421   1 111111112234 455432211    1346899998888777765322     111


Q ss_pred             ceE-EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          158 HSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       158 ~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      ... ..-+++.|+.....+.   ...++++|+.++....+....   .  .......-+++.+++......  ...++.+
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~lt~~~---~--~~~p~~spdg~~l~~~~~~~g--~~~l~~~  400 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGG---AFKLYVQDLATGQVTALTDTT---R--DESPSFAPNGRYILYATQQGG--RSVLAAV  400 (427)
T ss_pred             CceEECCCCCEEEEEEccCC---cEEEEEEECCCCCeEEccCCC---C--ccCceECCCCCEEEEEEecCC--CEEEEEE
Confidence            122 2222344544333221   136999999888876654211   1  111111224555555443222  3457777


Q ss_pred             ECCCC
Q 012184          237 NMTKL  241 (469)
Q Consensus       237 d~~~~  241 (469)
                      +....
T Consensus       401 ~~~g~  405 (427)
T PRK02889        401 SSDGR  405 (427)
T ss_pred             ECCCC
Confidence            77543

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=88.98  E-value=8.1  Score=36.87  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 012184          429 IENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      |.+|..-+.++++..+++++++
T Consensus       354 Lrkerd~L~keLeekkreleql  375 (442)
T PF06637_consen  354 LRKERDSLAKELEEKKRELEQL  375 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555433

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF14282 FlxA: FlxA-like protein

Probab=88.89  E-value=1.2  Score=34.97  Aligned_cols=6  Identities=33%  Similarity=0.628  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 012184          391 LSKELS  396 (469)
Q Consensus       391 ~~~el~  396 (469)
                      +.++|.
T Consensus        31 Lq~ql~   36 (106)
T PF14282_consen   31 LQEQLQ   36 (106)
T ss_pred             HHHHHH
Confidence            333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.83  E-value=4.7  Score=46.24  Aligned_cols=10  Identities=30%  Similarity=0.268  Sum_probs=5.1

Q ss_pred             EECCEEEEEc
Q 012184           60 KWGTKLLILG   69 (469)
Q Consensus        60 ~~~~~iy~~G   69 (469)
                      .++|++-+.|
T Consensus        15 ~lDG~t~i~G   24 (1201)
T PF12128_consen   15 KLDGHTHICG   24 (1201)
T ss_pred             ecCCceeeec
Confidence            3455555554

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=88.82  E-value=3.4  Score=29.95  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=15.6

Q ss_pred             hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  420 (469)
Q Consensus       381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~  420 (469)
                      +.+....+..+..|.+.+..+..+....+-+|...+.+++
T Consensus         7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e   46 (74)
T PF12329_consen    7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE   46 (74)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3333344444444444333333333333334444433333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.65  E-value=4.6  Score=42.93  Aligned_cols=45  Identities=18%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      .+.+++..+++....++.++++..+.+..++.....++.+++.|+
T Consensus       396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555555444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=88.60  E-value=3.8  Score=42.68  Aligned_cols=8  Identities=38%  Similarity=0.497  Sum_probs=3.2

Q ss_pred             EEEEECCC
Q 012184           81 VRFIDLET   88 (469)
Q Consensus        81 ~~~~d~~t   88 (469)
                      ++..|+..
T Consensus        42 L~~I~p~~   49 (594)
T PF05667_consen   42 LRVIDPSL   49 (594)
T ss_pred             HHHhCccc
Confidence            33444433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=88.56  E-value=3.8  Score=47.42  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=26.5

Q ss_pred             hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      .+++++.+++.+++.+++..+.++..+++++..++++++++++++...+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~  324 (1353)
T TIGR02680       276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ  324 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444445555555555555555555555555666555555555544443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=88.49  E-value=29  Score=34.82  Aligned_cols=137  Identities=7%  Similarity=-0.012  Sum_probs=64.6

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      .+|.+|+.++....+...   +.. .....-.-+++ |++......    ...+|.++..+..-..+.  +   .. + .
T Consensus       273 ~Iy~~d~~~~~~~~lt~~---~~~-~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~--~---~~-~-~  337 (429)
T PRK01742        273 NIYVMGANGGTPSQLTSG---AGN-NTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVG--G---RG-Y-S  337 (429)
T ss_pred             EEEEEECCCCCeEeeccC---CCC-cCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEec--C---CC-C-C
Confidence            489999988887766521   111 11111112344 554432221    346888887665433331  1   11 1 1


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE-EECCEEEEEecCCCCCCcceEEEEE
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      ....-++++|++.++       +.++.+|+.++.+..+...  .   . ..+.. .-++.++++++..+.  ...+++.+
T Consensus       338 ~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt~~--~---~-~~~~~~sPdG~~i~~~s~~g~--~~~l~~~~  402 (429)
T PRK01742        338 AQISADGKTLVMING-------DNVVKQDLTSGSTEVLSST--F---L-DESPSISPNGIMIIYSSTQGL--GKVLQLVS  402 (429)
T ss_pred             ccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEecCC--C---C-CCCceECCCCCEEEEEEcCCC--ceEEEEEE
Confidence            111222344555433       4588899999888765421  1   1 11212 225666666654322  23344445


Q ss_pred             CCCCcEEEe
Q 012184          238 MTKLAWSIL  246 (469)
Q Consensus       238 ~~~~~W~~~  246 (469)
                      .....=..+
T Consensus       403 ~~G~~~~~l  411 (429)
T PRK01742        403 ADGRFKARL  411 (429)
T ss_pred             CCCCceEEc
Confidence            544443344

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=88.44  E-value=9.9  Score=30.22  Aligned_cols=12  Identities=17%  Similarity=0.468  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 012184          436 LRQQKSAFEQEM  447 (469)
Q Consensus       436 ~~q~~~~~~~~~  447 (469)
                      ++.+++.+..++
T Consensus        96 l~e~l~eLq~~i  107 (119)
T COG1382          96 LQERLEELQSEI  107 (119)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.42  E-value=28  Score=34.53  Aligned_cols=202  Identities=11%  Similarity=0.060  Sum_probs=95.7

Q ss_pred             CeeeEEECCEEEEEccccCCCCCcceEEEEEC-CCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcE
Q 012184           55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDV  132 (469)
Q Consensus        55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~-~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v  132 (469)
                      ..++...++.+|++|-. .       +..... .-.+|+.++....+|..  .+....++ +.++++|..+       .+
T Consensus       139 l~~v~f~~~~g~~vG~~-G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~G-------~v  201 (398)
T PLN00033        139 FNSISFKGKEGWIIGKP-A-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDEG-------AI  201 (398)
T ss_pred             eeeeEEECCEEEEEcCc-e-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEeccc-------eE
Confidence            34455557888888532 1       222222 34579988742122222  33344444 4577777322       25


Q ss_pred             EEEECCCCeEEEeeeCC-CCCC--------------CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC-ceEee
Q 012184          133 HFLDLETMTWDAVEVTQ-TPPA--------------PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQP  196 (469)
Q Consensus       133 ~~~d~~t~~W~~~~~~g-~~p~--------------~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~~  196 (469)
                      ++-+-...+|..+.... ..|.              .-..+.+....++.++++|-.+      .+++-+-... .|..+
T Consensus       202 ~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~  275 (398)
T PLN00033        202 YVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPH  275 (398)
T ss_pred             EEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEe
Confidence            55544556898762110 0011              1112233334456666666432      2333332233 38887


Q ss_pred             eecCCCCCCCcceEEEE-ECCEEEEEecCCCCCCcceEEEEECCCCc-----EEEeccCCCCCCCCCCCcceEEEEEcCC
Q 012184          197 EIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQETIVLNMTKLA-----WSILTSVKGRNPLASEGLSVCSAIIEGE  270 (469)
Q Consensus       197 ~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~d~~~~d~~~~~-----W~~~~~~~~~~p~~r~~~s~~~~~~~~~  270 (469)
                      .    .+.++...++.. .++.++++|..      ..++.-+.....     |..++.     +..  +..+..+...++
T Consensus       276 ~----~~~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~-----~~~--~~~l~~v~~~~d  338 (398)
T PLN00033        276 N----RASARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADI-----KSR--GFGILDVGYRSK  338 (398)
T ss_pred             c----CCCccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeeccc-----CCC--CcceEEEEEcCC
Confidence            4    344444444433 35678877642      123333333333     344321     111  123333334446


Q ss_pred             cEEEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184          271 HHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK  301 (469)
Q Consensus       271 ~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~  301 (469)
                      +.++++|...     -++.-.....+|....
T Consensus       339 ~~~~a~G~~G-----~v~~s~D~G~tW~~~~  364 (398)
T PLN00033        339 KEAWAAGGSG-----ILLRSTDGGKSWKRDK  364 (398)
T ss_pred             CcEEEEECCC-----cEEEeCCCCcceeEcc
Confidence            6888888642     2444445556777643

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=88.39  E-value=5.1  Score=28.82  Aligned_cols=30  Identities=20%  Similarity=0.155  Sum_probs=12.6

Q ss_pred             hhHhhhhhhhcchhhHHHHHHHHHHHHHHh
Q 012184          376 RFREKIDEVNSTHSELSKELSSVQGQLVAE  405 (469)
Q Consensus       376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~  405 (469)
                      +|+.+++.+=..+..++.++.+++.+...+
T Consensus         8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L   37 (72)
T PF06005_consen    8 QLEEKIQQAVETIALLQMENEELKEKNNEL   37 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444444444444444444433333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.35  E-value=8.3  Score=37.47  Aligned_cols=12  Identities=25%  Similarity=0.529  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHH
Q 012184          436 LRQQKSAFEQEM  447 (469)
Q Consensus       436 ~~q~~~~~~~~~  447 (469)
                      +.|.+.++.+|+
T Consensus       333 IKqAl~kLk~EI  344 (359)
T PF10498_consen  333 IKQALTKLKQEI  344 (359)
T ss_pred             HHHHHHHHHHHH
Confidence            333444444444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK10115 protease 2; Provisional

Probab=88.26  E-value=40  Score=36.19  Aligned_cols=211  Identities=7%  Similarity=-0.083  Sum_probs=98.1

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeE--EEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEEC-
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDL-  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~-  137 (469)
                      ++.-+++............+|++++.|..-  ..+-..   +........... +++..++.....   ..+++++|+. 
T Consensus       182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~  255 (686)
T PRK10115        182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAE  255 (686)
T ss_pred             CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECc
Confidence            444444433332212336799999998833  223211   112222222323 333333443332   3567888883 


Q ss_pred             -CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCCCcceEEEEEC
Q 012184          138 -ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITID  215 (469)
Q Consensus       138 -~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~~  215 (469)
                       .+..|..+.+   .+.. ..+... ..++.+|+.--.+  .....+...++. ...|..+..   ....+.--.+...+
T Consensus       256 ~~~~~~~~~~~---~~~~-~~~~~~-~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~---~~~~~~i~~~~~~~  325 (686)
T PRK10115        256 LADAEPFVFLP---RRKD-HEYSLD-HYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIP---PRENIMLEGFTLFT  325 (686)
T ss_pred             CCCCCceEEEE---CCCC-CEEEEE-eCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEEC---CCCCCEEEEEEEEC
Confidence             3445433321   1111 112222 3356788876443  222346777776 578988752   11122222344457


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC--CcEEEEEeccCCCCCceEEEEECC
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG--EHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      +.+++..-.   .....++++|+.+.....+.. +.  |  ... +......+.  +..++.+.+.  ....++|.||+.
T Consensus       326 ~~l~~~~~~---~g~~~l~~~~~~~~~~~~l~~-~~--~--~~~-~~~~~~~~~~~~~~~~~~ss~--~~P~~~y~~d~~  394 (686)
T PRK10115        326 DWLVVEERQ---RGLTSLRQINRKTREVIGIAF-DD--P--AYV-TWIAYNPEPETSRLRYGYSSM--TTPDTLFELDMD  394 (686)
T ss_pred             CEEEEEEEe---CCEEEEEEEcCCCCceEEecC-CC--C--ceE-eeecccCCCCCceEEEEEecC--CCCCEEEEEECC
Confidence            777666332   224568888876655554431 11  1  111 111111111  2233333333  335689999988


Q ss_pred             CCCCCC
Q 012184          294 PRDIPR  299 (469)
Q Consensus       294 ~~~w~~  299 (469)
                      +..|..
T Consensus       395 ~~~~~~  400 (686)
T PRK10115        395 TGERRV  400 (686)
T ss_pred             CCcEEE
Confidence            766553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.17  E-value=8.2  Score=40.69  Aligned_cols=42  Identities=12%  Similarity=0.158  Sum_probs=19.9

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA  414 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~  414 (469)
                      +.+.+++...+++.++++++.++++...+.++++++...++.
T Consensus       672 ~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~  713 (970)
T KOG0946|consen  672 QIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN  713 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445555555555555555444444444444444433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=88.00  E-value=7.7  Score=33.97  Aligned_cols=87  Identities=18%  Similarity=0.292  Sum_probs=43.0

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh------
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS------  426 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~------  426 (469)
                      |.-|+...++.+..+.....++-.|+..+.+....+...+.++..++..+..   +..+++.-..|++++....      
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~---K~~ELE~ce~ELqr~~~Ea~lLrek   88 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT---KQLELEVCENELQRKKNEAELLREK   88 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hhHhHHHhHHHHHHHhCHHHHhhhh
Confidence            4455555555555555555566666666665555555555555555444333   3333333333444443222      


Q ss_pred             -hhHHHHHHHHHHHHHH
Q 012184          427 -QTIENEVQILRQQKSA  442 (469)
Q Consensus       427 -~~~e~e~~~~~q~~~~  442 (469)
                       ..++.|+..++..+..
T Consensus        89 l~~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   89 LGQLEAELAELREELAC  105 (202)
T ss_pred             hhhhHHHHHHHHHHHHh
Confidence             2445555555555443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.93  E-value=14  Score=33.39  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             EEEEEecCCCCcccCcEEEEECCCCceEeeeec-------------CCCCCCCcceEEEEECCEEEEEecCCCCCCcceE
Q 012184          167 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK-------------GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQET  233 (469)
Q Consensus       167 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~-------------~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~  233 (469)
                      +-++.||.+.     .+-+.+...++|..-...             +....++...+.+.-+++++|             
T Consensus       176 krlvSgGcDn-----~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI-------------  237 (299)
T KOG1332|consen  176 KRLVSGGCDN-----LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII-------------  237 (299)
T ss_pred             ceeeccCCcc-----ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE-------------
Confidence            4577788763     344444445577542210             111233444444444444444             


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC-CCCCCccc
Q 012184          234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP-RDIPRPKI  302 (469)
Q Consensus       234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~-~~w~~~~~  302 (469)
                      |.-+.....|+.-.  ....|.+.+..+   +.+. ++.|-|.||     .|.+.++..+. ..|..+..
T Consensus       238 wt~~~e~e~wk~tl--l~~f~~~~w~vS---WS~s-Gn~LaVs~G-----dNkvtlwke~~~Gkw~~v~~  296 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTL--LEEFPDVVWRVS---WSLS-GNILAVSGG-----DNKVTLWKENVDGKWEEVGE  296 (299)
T ss_pred             EEecCccCcccccc--cccCCcceEEEE---Eecc-ccEEEEecC-----CcEEEEEEeCCCCcEEEccc
Confidence            34455567787522  222232222222   2222 455666666     34466666654 47876543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=87.90  E-value=6.5  Score=41.25  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=14.4

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          389 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       389 ~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      .++.+++..++..|.+.+.+..-+...++||+++
T Consensus       326 mkltrqkadirc~LlEarrk~egfddk~~eLEKk  359 (1265)
T KOG0976|consen  326 MKLTRQKADIRCALLEARRKAEGFDDKLNELEKK  359 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            3344444455555444443333333333333333

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=87.89  E-value=12  Score=32.71  Aligned_cols=17  Identities=18%  Similarity=0.563  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012184          431 NEVQILRQQKSAFEQEM  447 (469)
Q Consensus       431 ~e~~~~~q~~~~~~~~~  447 (469)
                      .|++.+.++-+++..++
T Consensus       170 ~ei~~lk~~~~ql~~~l  186 (189)
T PF10211_consen  170 EEIDFLKKQNQQLKAQL  186 (189)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444444

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.85  E-value=2.5  Score=36.29  Aligned_cols=11  Identities=45%  Similarity=0.679  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 012184          412 LEAQIAELQKM  422 (469)
Q Consensus       412 ~~~~~~e~~~~  422 (469)
                      ++.++.+++.+
T Consensus       121 l~~e~~~l~~k  131 (169)
T PF07106_consen  121 LEEEIEELEEK  131 (169)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=87.68  E-value=31  Score=34.25  Aligned_cols=237  Identities=9%  Similarity=0.057  Sum_probs=0.0

Q ss_pred             CceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        15 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      +++|.|++.+++=.++.+-                ..-....-....|.+|-+.-=.........++|+++...+.-+++
T Consensus        59 DdlWe~slk~g~~~ritS~----------------lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi  122 (668)
T COG4946          59 DDLWEYSLKDGKPLRITSG----------------LGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI  122 (668)
T ss_pred             hHHHHhhhccCCeeEEecc----------------cceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184           95 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      .   -.-.+-...+.-.-++.|.+.--...+-.-...+|..+....+        -.|.+..-.+..++.|+ ++++|-.
T Consensus       123 T---yfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~--------~e~LnlGpathiv~~dg-~ivigRn  190 (668)
T COG4946         123 T---YFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK--------TEPLNLGPATHIVIKDG-IIVIGRN  190 (668)
T ss_pred             E---EeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce--------eeeccCCceeeEEEeCC-EEEEccC


Q ss_pred             C---------CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          175 S---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       175 ~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      .         ..+.-..+|+=.....+++++-   +++...+  +-+++++++|.+.-+++.+   .+|.-|+.-+--.+
T Consensus       191 tydLP~WK~YkGGtrGklWis~d~g~tFeK~v---dl~~~vS--~PmIV~~RvYFlsD~eG~G---nlYSvdldGkDlrr  262 (668)
T COG4946         191 TYDLPHWKGYKGGTRGKLWISSDGGKTFEKFV---DLDGNVS--SPMIVGERVYFLSDHEGVG---NLYSVDLDGKDLRR  262 (668)
T ss_pred             cccCcccccccCCccceEEEEecCCcceeeee---ecCCCcC--CceEEcceEEEEecccCcc---ceEEeccCCchhhh


Q ss_pred             eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCccc
Q 012184          246 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI  302 (469)
Q Consensus       246 ~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~  302 (469)
                      -++..        .+-...+..+|...++-.||       |+|.||+.+..-.++..
T Consensus       263 HTnFt--------dYY~R~~nsDGkrIvFq~~G-------dIylydP~td~lekldI  304 (668)
T COG4946         263 HTNFT--------DYYPRNANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI  304 (668)
T ss_pred             cCCch--------hccccccCCCCcEEEEecCC-------cEEEeCCCcCcceeeec

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=87.61  E-value=5.4  Score=40.07  Aligned_cols=16  Identities=19%  Similarity=0.653  Sum_probs=12.1

Q ss_pred             hhhhcccCCCceeEee
Q 012184          450 ATSVQTQGSGGVWRWI  465 (469)
Q Consensus       450 ~~~~q~q~~~~~~~~~  465 (469)
                      ....|+.+.+++|-+.
T Consensus       434 ~p~vqeKK~s~IWqFF  449 (832)
T KOG2077|consen  434 NPAVQEKKRSSIWQFF  449 (832)
T ss_pred             CchhhhhccccHHHHH
Confidence            3456888999999764

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=87.54  E-value=8.1  Score=34.79  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  394 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e  394 (469)
                      +..+++........+........++++++++.+..+.+.+.+
T Consensus        32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~   73 (221)
T PF04012_consen   32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ   73 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444445555555555666666655555554444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=87.43  E-value=29  Score=33.67  Aligned_cols=105  Identities=16%  Similarity=0.047  Sum_probs=58.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC---CCCCcceEEEEECCCCeEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK---KSSDSMIVRFIDLETNLCG   92 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~---~~~~~~~~~~~d~~t~~W~   92 (469)
                      .+.++|..+++-...-+.+               ..||  +.+..-+..||+.-.+.+   .+...+.+.+||+.|.+=.
T Consensus        28 ~v~ViD~~~~~v~g~i~~G---------------~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDGG---------------FLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             eEEEEECCCCEEEEEEEcc---------------CCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            7888898874433222222               2233  223344678898876432   2235577999999999865


Q ss_pred             EeecCCCCCCCCcc-----eEEEE-ECC-EEEEEeccCCCCCccCcEEEEECCCCeEEE
Q 012184           93 VMETSGKVPVARGG-----HSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDA  144 (469)
Q Consensus        93 ~~~~~g~~p~~r~~-----~~~~~-~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~  144 (469)
                      .--..  ++.||..     +..+. -++ .||+. ..    ...+.+-++|+.+++-..
T Consensus        91 ~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~----~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        91 ADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFY-QF----SPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             eEEcc--CCCchhhccCccceEEECCCCCEEEEe-cC----CCCCEEEEEECCCCcEEE
Confidence            43322  2333311     11222 234 57765 11    135668888988877644

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=87.28  E-value=14  Score=31.18  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          393 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      .+...++-+|...++++..|.....+|+..+..++
T Consensus        84 e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~  118 (159)
T PF05384_consen   84 EEAHELQVRLAMLREREKQLRERRDELERRLRNLE  118 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445555555555555544444444444333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>TIGR00634 recN DNA repair protein RecN

Probab=87.19  E-value=5.1  Score=41.84  Aligned_cols=18  Identities=6%  Similarity=0.080  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 012184          410 FKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       410 ~~~~~~~~e~~~~l~~~~  427 (469)
                      .++....+++++++...+
T Consensus       325 e~l~~~~~~l~~eL~~l~  342 (563)
T TIGR00634       325 EEVLEYAEKIKEELDQLD  342 (563)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            333334444444444444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=87.17  E-value=37  Score=35.17  Aligned_cols=142  Identities=15%  Similarity=0.211  Sum_probs=77.6

Q ss_pred             EEEEECCCCe-EEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCC-CCCC
Q 012184           81 VRFIDLETNL-CGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPR  155 (469)
Q Consensus        81 ~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~-p~~r  155 (469)
                      +|.+.+.-+. =..+.   ++|..+...+...+   ++++++.-      ...-+++.++..+.+-+++...-+- ..+-
T Consensus       407 iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~~~  477 (691)
T KOG2048|consen  407 IYRLQPDPNVKVINVD---DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKCPS  477 (691)
T ss_pred             EEEeccCcceeEEEec---cchhhhccceeeEEEecCceEEEEe------cccceeEEEEecCcchhhhhccccccCCCc
Confidence            5555554422 22222   67777655554443   46677764      1245678888888877766532111 1222


Q ss_pred             CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE---ECCEEEEEecCCCCCCcce
Q 012184          156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT---IDENWYIVGGGDNNNGCQE  232 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~---~~~~l~v~GG~~~~~~~~d  232 (469)
                      ..+-+++-++++|.++++.      ..|++|++++.+-..+..  .++  +...+++.   ..+.+.|.--      .+.
T Consensus       478 I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~--rln--~~vTa~~~~~~~~~~lvvats------~nQ  541 (691)
T KOG2048|consen  478 ISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLKV--RLN--IDVTAAAFSPFVRNRLVVATS------NNQ  541 (691)
T ss_pred             ceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecchh--ccC--cceeeeeccccccCcEEEEec------CCe
Confidence            2333333346788888753      469999999987665431  111  22222222   2355666522      357


Q ss_pred             EEEEECCC---CcEEEec
Q 012184          233 TIVLNMTK---LAWSILT  247 (469)
Q Consensus       233 ~~~~d~~~---~~W~~~~  247 (469)
                      ++.||+..   ..|.+..
T Consensus       542 v~efdi~~~~l~~ws~~n  559 (691)
T KOG2048|consen  542 VFEFDIEARNLTRWSKNN  559 (691)
T ss_pred             EEEEecchhhhhhhhhcc
Confidence            88999843   4565543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.09  E-value=8.3  Score=41.27  Aligned_cols=6  Identities=33%  Similarity=0.849  Sum_probs=2.7

Q ss_pred             EEEEEC
Q 012184           81 VRFIDL   86 (469)
Q Consensus        81 ~~~~d~   86 (469)
                      +-.||.
T Consensus       173 lR~y~~  178 (717)
T PF10168_consen  173 LRLYDI  178 (717)
T ss_pred             EEEEec
Confidence            444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=86.93  E-value=2.6  Score=35.69  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=8.7

Q ss_pred             hhhcchhhHHHHHHHHHHHHHH
Q 012184          383 EVNSTHSELSKELSSVQGQLVA  404 (469)
Q Consensus       383 ~~~~~~~e~~~el~~~~~~l~~  404 (469)
                      ..+.++..++.+++...++++.
T Consensus        47 ~~~~~l~~~~~el~~~~~~l~~   68 (158)
T PF03938_consen   47 ALQKELQAKQKELQKLQQKLQS   68 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444433333

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>PHA02562 46 endonuclease subunit; Provisional

Probab=86.91  E-value=7.4  Score=40.65  Aligned_cols=11  Identities=9%  Similarity=0.277  Sum_probs=4.3

Q ss_pred             HHHHHHhHHHH
Q 012184          353 IDAIKEDKRVL  363 (469)
Q Consensus       353 ~~~l~~~~~~~  363 (469)
                      +..++.+...+
T Consensus       308 i~~l~~~l~~l  318 (562)
T PHA02562        308 LKELQHSLEKL  318 (562)
T ss_pred             HHHHHHHHHHH
Confidence            33444433333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=86.83  E-value=5.9  Score=41.49  Aligned_cols=53  Identities=21%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHH
Q 012184          349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  401 (469)
Q Consensus       349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~  401 (469)
                      +..++..|+.+...+...+.....+.+.|-..+.+.++.+.++++.++..+.+
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~  137 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQ  137 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666666666665555444455555555555555555655555544433

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.68  E-value=7.6  Score=37.97  Aligned_cols=12  Identities=33%  Similarity=0.338  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 012184          432 EVQILRQQKSAF  443 (469)
Q Consensus       432 e~~~~~q~~~~~  443 (469)
                      +++++.|.++..
T Consensus       346 ~IqeleqdL~a~  357 (521)
T KOG1937|consen  346 RIQELEQDLEAV  357 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            334444444333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=86.58  E-value=31  Score=33.04  Aligned_cols=110  Identities=13%  Similarity=0.060  Sum_probs=47.7

Q ss_pred             cCcEEEEECCCCe-EEEeee-CCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECC--CCceEeeeecCCC-
Q 012184          129 LNDVHFLDLETMT-WDAVEV-TQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQ--TNEWSQPEIKGDL-  202 (469)
Q Consensus       129 ~~~v~~~d~~t~~-W~~~~~-~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~--~~~W~~~~~~~~~-  202 (469)
                      .+.+.+||+.+.. ...... .-..+....-+.++... +.++|+.-..     .+.+.+|++.  +++.+.+...... 
T Consensus       147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            4569999987632 211000 00111111112233333 3567776332     3677788775  4455443322222 


Q ss_pred             ---CCCCcceEEEEE-C-CEEEEEecCCCCCCcceEEEEEC--CCCcEEEecc
Q 012184          203 ---VTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTS  248 (469)
Q Consensus       203 ---p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~~~~  248 (469)
                         +.+|....++.. + ..+|+...     ..+.+.+|++  ....++.+..
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~  269 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGH  269 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEE
Confidence               233433223322 2 35666522     1234556665  4444554443

>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]

Probab=86.56  E-value=4.7  Score=39.33  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          393 KELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       393 ~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      .|+.+++.++-.+++--+-|++|++
T Consensus       528 ~Ek~ELkmd~lrerelreslekql~  552 (641)
T KOG3915|consen  528 LEKTELKMDFLRERELRESLEKQLA  552 (641)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344444444

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=86.53  E-value=6.8  Score=41.08  Aligned_cols=19  Identities=32%  Similarity=0.578  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 012184          432 EVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       432 e~~~~~q~~~~~~~~~~~~  450 (469)
                      +++...++..+++++++++
T Consensus       595 ele~~~~k~~rleEE~e~L  613 (698)
T KOG0978|consen  595 ELEIEKFKRKRLEEELERL  613 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=86.41  E-value=13  Score=33.50  Aligned_cols=16  Identities=31%  Similarity=0.561  Sum_probs=7.3

Q ss_pred             hHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAF  443 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~  443 (469)
                      .++.++.++.++++.+
T Consensus       124 ~Le~Ki~e~~~~~~~l  139 (225)
T COG1842         124 ALEQKIAELRAKKEAL  139 (225)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444433

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=86.32  E-value=32  Score=32.92  Aligned_cols=138  Identities=17%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             CEEEEEccccCC-CC--Cc-ceEEEEECCCC-----eEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEE
Q 012184           63 TKLLILGGHYKK-SS--DS-MIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  133 (469)
Q Consensus        63 ~~iy~~GG~~~~-~~--~~-~~~~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~  133 (469)
                      ...+++|..... ..  .. -.++.|+....     +++.+...   +..-.-++++.++++|++.-|        +.++
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g--------~~l~  110 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG--------NKLY  110 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec--------CEEE
Confidence            466777643221 11  22 56899998885     66666522   233346677778999666544        4488


Q ss_pred             EEECCCCe-EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE
Q 012184          134 FLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI  212 (469)
Q Consensus       134 ~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~  212 (469)
                      +|++.... +......   ..+-...++.+. +++|+ +|....+   -.++.|+....+-..+.   .-+.++...++.
T Consensus       111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~-~~~I~-vgD~~~s---v~~~~~~~~~~~l~~va---~d~~~~~v~~~~  179 (321)
T PF03178_consen  111 VYDLDNSKTLLKKAFY---DSPFYITSLSVF-KNYIL-VGDAMKS---VSLLRYDEENNKLILVA---RDYQPRWVTAAE  179 (321)
T ss_dssp             EEEEETTSSEEEEEEE----BSSSEEEEEEE-TTEEE-EEESSSS---EEEEEEETTTE-EEEEE---EESS-BEEEEEE
T ss_pred             EEEccCcccchhhhee---cceEEEEEEecc-ccEEE-EEEcccC---EEEEEEEccCCEEEEEE---ecCCCccEEEEE
Confidence            88888777 7776532   233344445555 55444 5533221   22445566555555554   234567766666


Q ss_pred             EE-CCEEEEEec
Q 012184          213 TI-DENWYIVGG  223 (469)
Q Consensus       213 ~~-~~~l~v~GG  223 (469)
                      .+ ++. .++++
T Consensus       180 ~l~d~~-~~i~~  190 (321)
T PF03178_consen  180 FLVDED-TIIVG  190 (321)
T ss_dssp             EE-SSS-EEEEE
T ss_pred             EecCCc-EEEEE
Confidence            66 555 44444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.31  E-value=11  Score=40.76  Aligned_cols=10  Identities=20%  Similarity=0.135  Sum_probs=5.0

Q ss_pred             EEEEEeccCC
Q 012184          272 HLVAFGGYNG  281 (469)
Q Consensus       272 ~l~v~GG~~~  281 (469)
                      .-.+.||...
T Consensus       658 ~GtlTGGs~~  667 (1174)
T KOG0933|consen  658 SGTLTGGSRS  667 (1174)
T ss_pred             CCcccCCCCC
Confidence            3345566543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.21  E-value=23  Score=31.28  Aligned_cols=162  Identities=17%  Similarity=0.090  Sum_probs=91.4

Q ss_pred             eEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184           58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  135 (469)
Q Consensus        58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~  135 (469)
                      ....+++||..-|..+..    .+.++|+.+++  |+..-   + |....+-+.+.+++++|..-=..      .-.+.|
T Consensus        51 L~~~~g~i~esTG~yg~S----~ir~~~L~~gq~~~s~~l---~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~  116 (262)
T COG3823          51 LEYLDGHILESTGLYGFS----KIRVSDLTTGQEIFSEKL---A-PDTVFGEGITKLGDYFYQLTWKE------GVAFKY  116 (262)
T ss_pred             eeeeCCEEEEeccccccc----eeEEEeccCceEEEEeec---C-CccccccceeeccceEEEEEecc------ceeEEE
Confidence            345578888888866543    48999999776  44332   2 45667788899999999873111      125677


Q ss_pred             ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce-EeeeecCCCCCCCcceEEEEE
Q 012184          136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQPEIKGDLVTGRAGHAGITI  214 (469)
Q Consensus       136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~~  214 (469)
                      |+.+.+-     .|..+.+-.+-+++..+. .|++--|.      .-+...||++-.= ..+.++.+-.+-+.--..-.+
T Consensus       117 d~~t~~~-----lg~~~y~GeGWgLt~d~~-~LimsdGs------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V  184 (262)
T COG3823         117 DADTLEE-----LGRFSYEGEGWGLTSDDK-NLIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV  184 (262)
T ss_pred             ChHHhhh-----hcccccCCcceeeecCCc-ceEeeCCc------eEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence            7665432     234455666677777644 47776553      2344456554321 112212111111222234445


Q ss_pred             CCEEEEEecCCCCCCcceEEEEECCCCc---EEEeccCC
Q 012184          215 DENWYIVGGGDNNNGCQETIVLNMTKLA---WSILTSVK  250 (469)
Q Consensus       215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~---W~~~~~~~  250 (469)
                      ++.+|.     +--..+.+.+.|+.+++   |..+..++
T Consensus       185 dG~lyA-----NVw~t~~I~rI~p~sGrV~~widlS~L~  218 (262)
T COG3823         185 DGELYA-----NVWQTTRIARIDPDSGRVVAWIDLSGLL  218 (262)
T ss_pred             ccEEEE-----eeeeecceEEEcCCCCcEEEEEEccCCc
Confidence            555553     12235678889998864   66666544

>PRK13684 Ycf48-like protein; Provisional

Probab=86.20  E-value=33  Score=33.09  Aligned_cols=173  Identities=12%  Similarity=0.091  Sum_probs=83.8

Q ss_pred             CeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE
Q 012184           89 NLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY  167 (469)
Q Consensus        89 ~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~  167 (469)
                      .+|..+...  ...+...+.+..++ +.+|+.|..       ..+++-+-.-.+|..+..    +..-..+.+....++.
T Consensus       119 ~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~  185 (334)
T PRK13684        119 KNWTRIPLS--EKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGK  185 (334)
T ss_pred             CCCeEccCC--cCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCe
Confidence            479988631  11222223344444 446665532       225544445678998752    2222344455555665


Q ss_pred             EEEEecCCCCcccCcEEEE-ECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEE-C-CCCcE
Q 012184          168 LIVFGGCSHSIFFNDLHVL-DLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLN-M-TKLAW  243 (469)
Q Consensus       168 l~v~GG~~~~~~~~~i~~~-d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d-~-~~~~W  243 (469)
                      ++++|..+      .++.- |....+|..+.    .+..+..++++.. ++.++++|.. +      ..++. . .-..|
T Consensus       186 ~v~~g~~G------~i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW  248 (334)
T PRK13684        186 YVAVSSRG------NFYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESW  248 (334)
T ss_pred             EEEEeCCc------eEEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCcc
Confidence            55554322      23322 33345798864    2444555555544 5678888653 1      12332 2 33588


Q ss_pred             EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184          244 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK  301 (469)
Q Consensus       244 ~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~  301 (469)
                      +.+.. +...    ..+.+..+...+.+.++++|...     -++.-.-...+|....
T Consensus       249 ~~~~~-~~~~----~~~~l~~v~~~~~~~~~~~G~~G-----~v~~S~d~G~tW~~~~  296 (334)
T PRK13684        249 SKPII-PEIT----NGYGYLDLAYRTPGEIWAGGGNG-----TLLVSKDGGKTWEKDP  296 (334)
T ss_pred             ccccC-Cccc----cccceeeEEEcCCCCEEEEcCCC-----eEEEeCCCCCCCeECC
Confidence            87532 2111    12233333334455788877532     2443333456787653

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=86.20  E-value=20  Score=31.22  Aligned_cols=48  Identities=10%  Similarity=0.088  Sum_probs=25.0

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  400 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~  400 (469)
                      ...++++...+...+........+.....+++++.+.+.+.|-+++..
T Consensus        57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~  104 (181)
T PRK13454         57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVA  104 (181)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555555555555555555555444433

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=86.17  E-value=2.9  Score=41.53  Aligned_cols=11  Identities=9%  Similarity=0.407  Sum_probs=4.2

Q ss_pred             hhhHHHHHHHH
Q 012184          388 HSELSKELSSV  398 (469)
Q Consensus       388 ~~e~~~el~~~  398 (469)
                      ..+++++|+.+
T Consensus        78 asELEKqLaaL   88 (475)
T PRK13729         78 AAQMQKQYEEI   88 (475)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PRK11546 zraP zinc resistance protein; Provisional

Probab=86.15  E-value=5.3  Score=32.95  Aligned_cols=14  Identities=29%  Similarity=0.444  Sum_probs=5.8

Q ss_pred             hHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKS  441 (469)
Q Consensus       428 ~~e~e~~~~~q~~~  441 (469)
                      ++.+|++.|++++.
T Consensus        93 aL~kEI~~Lr~kL~  106 (143)
T PRK11546         93 AVAKEMENLRQSLD  106 (143)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444433

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=85.98  E-value=12  Score=34.02  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=8.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHH
Q 012184          389 SELSKELSSVQGQLVAERSRCF  410 (469)
Q Consensus       389 ~e~~~el~~~~~~l~~~~~~~~  410 (469)
                      .++...++..+.+++..+.++.
T Consensus       136 a~L~~Kierrk~ElEr~rkRle  157 (338)
T KOG3647|consen  136 AALGSKIERRKAELERTRKRLE  157 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=85.97  E-value=7.1  Score=33.65  Aligned_cols=55  Identities=18%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHH
Q 012184          395 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE--NEVQILRQQKSAFEQEMER  449 (469)
Q Consensus       395 l~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e--~e~~~~~q~~~~~~~~~~~  449 (469)
                      ++.++.+++.+.+++.++++.++.+..+.-.-|=|+  +|+++..++++++|+.+.+
T Consensus        87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~  143 (175)
T PRK13182         87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK  143 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444455555554444443333333222  4555555555555554443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=85.95  E-value=18  Score=29.63  Aligned_cols=11  Identities=36%  Similarity=0.567  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 012184          429 IENEVQILRQQ  439 (469)
Q Consensus       429 ~e~e~~~~~q~  439 (469)
                      +++++.++.+.
T Consensus       103 le~e~~~~~~r  113 (132)
T PF07926_consen  103 LEKELSELEQR  113 (132)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=85.85  E-value=17  Score=32.30  Aligned_cols=43  Identities=7%  Similarity=0.084  Sum_probs=20.0

Q ss_pred             HHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184          355 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS  397 (469)
Q Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~  397 (469)
                      .|.++...+...+.+......+....+.++++.+.+.+.+-++
T Consensus        81 vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~  123 (204)
T PRK09174         81 IIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHS  123 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445544444444444444444444444444333

>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A

Probab=85.77  E-value=30  Score=32.08  Aligned_cols=156  Identities=13%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             eEEECCEEEEEccccCCCCCcceEEEEECCCC-eEEEeecCCCCCCCCcceEEEE-E-CCEEEEEeccCCCCCccCcEEE
Q 012184           58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVMETSGKVPVARGGHSVTL-V-GSRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~-~-~~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      +...++.+++. .+.........+..+..+.+ +|.......  +.......+.+ . ++.|+++--.. ..  ..-.+.
T Consensus       114 i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~--~~~~~~  187 (275)
T PF13088_consen  114 IQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GN--DDIYIS  187 (275)
T ss_dssp             EEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SS--TEEEEE
T ss_pred             eEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CC--CcEEEE
Confidence            44457888877 22221112334555666655 499887321  22233333333 3 56788775332 11  122344


Q ss_pred             EECC-CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce-EEE
Q 012184          135 LDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-AGI  212 (469)
Q Consensus       135 ~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-~~~  212 (469)
                      +..+ -.+|+.+.+. .+|.+.....++...++.++++.........-.+++-.-...+|..+....+-+...+.+ +++
T Consensus       188 ~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~  266 (275)
T PF13088_consen  188 RSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLT  266 (275)
T ss_dssp             EESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEE
T ss_pred             EECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeE
Confidence            4444 3579987643 445555555666666777888777322211122333233367798765332223223333 444


Q ss_pred             EE-CCEEEE
Q 012184          213 TI-DENWYI  220 (469)
Q Consensus       213 ~~-~~~l~v  220 (469)
                      .. +++|+|
T Consensus       267 ~~~dg~l~i  275 (275)
T PF13088_consen  267 QLPDGKLYI  275 (275)
T ss_dssp             EEETTEEEE
T ss_pred             EeCCCcCCC
Confidence            44 468876

...

>PRK11519 tyrosine kinase; Provisional

Probab=85.75  E-value=8.9  Score=41.41  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          413 EAQIAELQKMLESSQTIENEVQILRQQKS  441 (469)
Q Consensus       413 ~~~~~e~~~~l~~~~~~e~e~~~~~q~~~  441 (469)
                      ++++++++.+.....+.|+++.+++++.+
T Consensus       352 ~~~~~~l~~~~~~lp~~e~~~~~L~Re~~  380 (719)
T PRK11519        352 EDEKAKLNGRVTAMPKTQQEIVRLTRDVE  380 (719)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            33333333333333344444444444443

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=85.72  E-value=7.6  Score=35.90  Aligned_cols=68  Identities=28%  Similarity=0.415  Sum_probs=39.1

Q ss_pred             hhhcchhhHHHHHHHHHHHHHHh----hhH---HHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184          383 EVNSTHSELSKELSSVQGQLVAE----RSR---CFKLEAQIAELQKML-------ESSQTIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       383 ~~~~~~~e~~~el~~~~~~l~~~----~~~---~~~~~~~~~e~~~~l-------~~~~~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      +++..+.|+.++++.-++++..+    +++   +.+|-+-+.||++-.       -....++++.+++..++..+++||-
T Consensus         4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELA   83 (351)
T PF07058_consen    4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELA   83 (351)
T ss_pred             hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555544444333    222   233344455555552       2233788889999999999999886


Q ss_pred             Hh
Q 012184          449 RA  450 (469)
Q Consensus       449 ~~  450 (469)
                      ++
T Consensus        84 Ra   85 (351)
T PF07058_consen   84 RA   85 (351)
T ss_pred             Hh
Confidence            44

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=85.71  E-value=9.1  Score=39.90  Aligned_cols=47  Identities=19%  Similarity=0.426  Sum_probs=22.8

Q ss_pred             hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHH
Q 012184          349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL  395 (469)
Q Consensus       349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el  395 (469)
                      +..++..+..+...++..+........++..++++.+...+++++++
T Consensus       333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~  379 (594)
T PF05667_consen  333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL  379 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554444444444444444444444444444433

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=85.69  E-value=5.3  Score=40.62  Aligned_cols=19  Identities=16%  Similarity=0.254  Sum_probs=7.2

Q ss_pred             hhhhHhhhhhhhcchhhHH
Q 012184          374 NSRFREKIDEVNSTHSELS  392 (469)
Q Consensus       374 ~~~l~~~~~~~~~~~~e~~  392 (469)
                      ..-|..++++..+.+.+++
T Consensus       127 vsvLteqVeaQgEKIrDLE  145 (861)
T KOG1899|consen  127 VSVLTEQVEAQGEKIRDLE  145 (861)
T ss_pred             HHHHHHHHHHhhhhHHHHH
Confidence            3333333333333333333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=85.67  E-value=12  Score=30.95  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=11.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEMER  449 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~~  449 (469)
                      +++++++.++++++++.+.+++
T Consensus       112 ~l~~~l~~~~~~~~~~~~~l~~  133 (140)
T PRK03947        112 KLEEALQKLASRIAQLAQELQQ  133 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555543

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=85.64  E-value=15  Score=32.32  Aligned_cols=66  Identities=15%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             HHHHHhHHHHhhhhhhhh--hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184          354 DAIKEDKRVLELSLTEVR--TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL  419 (469)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~  419 (469)
                      ..++.........+++..  ..+++|+..+.+.+..+.+.++++.+.+.......++-...|+++.+|
T Consensus        12 d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L   79 (207)
T PF05546_consen   12 DSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL   79 (207)
T ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444  566777777777777777777777766666666655555555555544

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=85.62  E-value=4.7  Score=43.55  Aligned_cols=8  Identities=0%  Similarity=0.156  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q 012184          439 QKSAFEQE  446 (469)
Q Consensus       439 ~~~~~~~~  446 (469)
                      +..+++++
T Consensus       371 ~~~~L~R~  378 (726)
T PRK09841        371 EVLRLSRD  378 (726)
T ss_pred             HHHHHHHH
Confidence            33344444

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=85.52  E-value=8.2  Score=43.27  Aligned_cols=105  Identities=15%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             hhHHHHHHhHHHHhhhhhhhhhhhhhhHhh----------------hhhhhcchhhHHHHHHHHHHHHHHhhhHH-----
Q 012184          351 TDIDAIKEDKRVLELSLTEVRTENSRFREK----------------IDEVNSTHSELSKELSSVQGQLVAERSRC-----  409 (469)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~e~~~el~~~~~~l~~~~~~~-----  409 (469)
                      .+++..+++...++..+....++..+++++                ..+++.++.+...++++++++++.++.+.     
T Consensus        58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~  137 (1109)
T PRK10929         58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISD  137 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH


Q ss_pred             ---------HHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184          410 ---------FKLEAQIAELQKMLES------------SQTIENEVQILRQQKSAFEQEMERATSVQT  455 (469)
Q Consensus       410 ---------~~~~~~~~e~~~~l~~------------~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~  455 (469)
                               .+..++++|++.+++.            ...++.|+..+.++....+.++.-.+.+|.
T Consensus       138 ~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~  204 (1109)
T PRK10929        138 SLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQE  204 (1109)
T ss_pred             HHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=85.45  E-value=10  Score=36.69  Aligned_cols=30  Identities=17%  Similarity=0.290  Sum_probs=13.6

Q ss_pred             hhhhhhHhhhhhhhcchhhHHHHHHHHHHH
Q 012184          372 TENSRFREKIDEVNSTHSELSKELSSVQGQ  401 (469)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~  401 (469)
                      .+...++.++++.|.++.++++|..++..+
T Consensus        41 a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~   70 (459)
T KOG0288|consen   41 AESRAIKAKLQEKELELNRLQEENTQLNEE   70 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=85.44  E-value=11  Score=35.44  Aligned_cols=75  Identities=25%  Similarity=0.420  Sum_probs=48.5

Q ss_pred             hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 012184          367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS  441 (469)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~  441 (469)
                      +..+..++..|..++....+.....++++..+..++..++.++..+-.+.+|+++.|....    +|..|+.+++.+-.
T Consensus       208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~  286 (306)
T PF04849_consen  208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA  286 (306)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666666666666677777777777777777777777777777765544    45555555555443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=85.37  E-value=5.9  Score=38.45  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=14.6

Q ss_pred             hhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184          370 VRTENSRFREKIDEVNSTHSELSKELSSVQGQL  402 (469)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l  402 (469)
                      ...+...|+.++...+..+.+..++.+++-.++
T Consensus        13 t~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i   45 (344)
T PF12777_consen   13 TEEQVEEMQEELEEKQPELEEKQKEAEELLEEI   45 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444433333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=85.35  E-value=8.3  Score=35.23  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=24.2

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAER  406 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~  406 (469)
                      -+.-|+.++.+.+.++++.+.|+.+++.||...+
T Consensus        69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr  102 (305)
T PF15290_consen   69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMR  102 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3455666777777777777778888887777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=85.34  E-value=2.8  Score=38.95  Aligned_cols=34  Identities=29%  Similarity=0.217  Sum_probs=14.3

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 012184          398 VQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN  431 (469)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~  431 (469)
                      ++.++..++..+.+|+-++++++.+++++++.++
T Consensus        59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~   92 (263)
T PRK10803         59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK   92 (263)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444443333

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=85.29  E-value=30  Score=33.85  Aligned_cols=214  Identities=12%  Similarity=0.027  Sum_probs=93.9

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  135 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~  135 (469)
                      .+..-+++-++|+|...   ....+|.+|+.++.-.++.   +.+. ...+..++.-+..+|++-.       ...+..+
T Consensus        41 ~~ft~dG~kllF~s~~d---g~~nly~lDL~t~~i~QLT---dg~g~~~~g~~~s~~~~~~~Yv~~-------~~~l~~v  107 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFD---GNRNLYLLDLATGEITQLT---DGPGDNTFGGFLSPDDRALYYVKN-------GRSLRRV  107 (386)
T ss_dssp             --B-TTS-EEEEEE-TT---SS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEET-------TTEEEEE
T ss_pred             CCcCCCCCEEEEEeccC---CCcceEEEEcccCEEEECc---cCCCCCccceEEecCCCeEEEEEC-------CCeEEEE
Confidence            33444566666655432   2345999999999999998   4332 2333333333456766631       2358999


Q ss_pred             ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC----CC--------------CcccCcEEEEECCCCceEeee
Q 012184          136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC----SH--------------SIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~----~~--------------~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      |+.|.+=+.+.   ..|..-.+....+.+.+.-.++|=.    +.              ......+...|+.+++...+-
T Consensus       108 dL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~  184 (386)
T PF14583_consen  108 DLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF  184 (386)
T ss_dssp             ETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred             ECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence            99998866665   3444444444444332222232311    00              012356888899998887764


Q ss_pred             ecCCCCCCCcceEEE-EECCEEEEEecCCCCCCc-ceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEE
Q 012184          198 IKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGC-QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA  275 (469)
Q Consensus       198 ~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~-~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v  275 (469)
                      ..    ..-.+|... ..++.+++|.=-...... ..+|..|.......++..-.   +  ....+.-.+..+|....|+
T Consensus       185 ~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~---~--~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  185 ED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM---E--GESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             EE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T--TEEEEEEEE-TTSS-EEEE
T ss_pred             ec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC---C--CcccccccccCCCCEEEEE
Confidence            22    112244322 235667777321111222 36999999877666654321   1  2233444566665444443


Q ss_pred             EeccCCCCCceEEEEECCCCC
Q 012184          276 FGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       276 ~GG~~~~~~~~~~~~d~~~~~  296 (469)
                       +...+...--+..+|+.+..
T Consensus       256 -~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  256 -SYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             -EEETTT--EEEEEE-TTT--
T ss_pred             -eecCCCCceEEEeeCCCCCC
Confidence             33233222336667776653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=85.28  E-value=35  Score=34.74  Aligned_cols=54  Identities=15%  Similarity=0.040  Sum_probs=33.1

Q ss_pred             cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      .++||+||+..+.|-.+-.+.     ..+--++.++ -+.|+.+||.+     +.+..+|+.+..
T Consensus       154 g~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~ks  208 (703)
T KOG2321|consen  154 GSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACGTED-----GVVEFWDPRDKS  208 (703)
T ss_pred             CcceEEEEccccccccccccc-----cccceeeeecCccceEEecccC-----ceEEEecchhhh
Confidence            567999999999996653211     1122233333 23488888854     357777776544

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=85.24  E-value=11  Score=27.23  Aligned_cols=31  Identities=16%  Similarity=0.324  Sum_probs=13.3

Q ss_pred             hhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184          367 LTEVRTENSRFREKIDEVNSTHSELSKELSS  397 (469)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~  397 (469)
                      .+.+-..+.-|+-+++++++.+..+.++.+.
T Consensus        13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422         13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444333

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=85.24  E-value=8.8  Score=40.21  Aligned_cols=83  Identities=14%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHh
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      .++.++++.++.++.++.++++..+.++..........-.++.+.+++--.++    +.+++...+.+-..++...++++
T Consensus        82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~  161 (632)
T PF14817_consen   82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQL  161 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555544444444444444444422222    22333333333334455555555


Q ss_pred             hhhcccC
Q 012184          451 TSVQTQG  457 (469)
Q Consensus       451 ~~~q~q~  457 (469)
                      ++.++..
T Consensus       162 q~~~R~a  168 (632)
T PF14817_consen  162 QDIQRKA  168 (632)
T ss_pred             HHHHhhc
Confidence            5555543

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=85.01  E-value=13  Score=30.79  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=14.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184          428 TIENEVQILRQQKSAFEQEMERATSVQ  454 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q  454 (469)
                      ++++.++++-+...++++++++..+.+
T Consensus       112 ~l~~~l~~l~~~~~~l~~~~q~~~q~~  138 (145)
T COG1730         112 KLQQALAELAQRIEQLEQEAQQLQQKQ  138 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555556666655554444

>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long

Probab=84.92  E-value=15  Score=30.75  Aligned_cols=30  Identities=40%  Similarity=0.426  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          393 KELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      ++|...+.++..++.++..++..+++..++
T Consensus        67 kele~~~~qv~~Lr~~e~~le~~~~~a~~~   96 (152)
T PF07321_consen   67 KELEKWQQQVASLREREAELEQQLAEAEEQ   96 (152)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            344455555555555555555555544443

YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].

>PRK04406 hypothetical protein; Provisional

Probab=84.87  E-value=8.3  Score=28.00  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHH
Q 012184          395 LSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       395 l~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      +.+++.++.-...-+++|...+
T Consensus        13 i~~LE~~lAfQE~tIe~LN~~v   34 (75)
T PRK04406         13 INDLECQLAFQEQTIEELNDAL   34 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344333

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=84.71  E-value=13  Score=40.42  Aligned_cols=56  Identities=20%  Similarity=0.186  Sum_probs=28.0

Q ss_pred             hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      .+...+..++.++++.+.+.++++++.+.++..+.....+++.++.+.++++..++
T Consensus       643 ~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie  698 (1072)
T KOG0979|consen  643 AEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIE  698 (1072)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33344444455555555555555655555555555544555544444444433333

>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function

Probab=84.70  E-value=9.2  Score=31.18  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184          428 TIENEVQILRQQKSAFEQEMERATSV  453 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~~~~~~  453 (469)
                      +.++|.++..+++.++..++++.+.+
T Consensus        64 q~~~e~~~r~e~k~~l~~ql~qv~~L   89 (131)
T PF11068_consen   64 QFEQEKQERLEQKNQLLQQLEQVQKL   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55666666666666666666655433

; PDB: 4DCI_C.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=84.61  E-value=11  Score=41.65  Aligned_cols=19  Identities=5%  Similarity=-0.092  Sum_probs=9.4

Q ss_pred             eEEECCEEEEEccccCCCC
Q 012184           58 MVKWGTKLLILGGHYKKSS   76 (469)
Q Consensus        58 ~~~~~~~iy~~GG~~~~~~   76 (469)
                      +...+++||++--|..++.
T Consensus       143 AFQD~~~LYlVMdY~pGGD  161 (1317)
T KOG0612|consen  143 AFQDERYLYLVMDYMPGGD  161 (1317)
T ss_pred             HhcCccceEEEEecccCch
Confidence            3344555666555444443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=84.48  E-value=14  Score=39.47  Aligned_cols=17  Identities=12%  Similarity=0.333  Sum_probs=6.7

Q ss_pred             hhhhhhhhhHhhhhhhh
Q 012184          369 EVRTENSRFREKIDEVN  385 (469)
Q Consensus       369 ~~~~~~~~l~~~~~~~~  385 (469)
                      +.+....+++..+.+++
T Consensus       355 ear~~~~q~~~ql~~le  371 (980)
T KOG0980|consen  355 EARRRIEQYENQLLALE  371 (980)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333344444444333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=84.44  E-value=6.3  Score=38.26  Aligned_cols=51  Identities=24%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184          369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL  419 (469)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~  419 (469)
                      .......-++.++++++..+.+.+.+++..+.++...+.++..++.+.++.
T Consensus       211 ~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~  261 (344)
T PF12777_consen  211 EVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEA  261 (344)
T ss_dssp             HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455556677777777777777777777766666666666666555443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=84.35  E-value=16  Score=36.53  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCceeE
Q 012184          423 LESSQTIENEVQILRQQKSAFEQEMERATSVQT-QGSGGVWR  463 (469)
Q Consensus       423 l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~-q~~~~~~~  463 (469)
                      .+....+.+++..++...+++.++...++...+ .+..|.||
T Consensus       156 ~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG  197 (448)
T COG1322         156 AEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG  197 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence            344445556666666666666666555544432 66778886

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.31  E-value=25  Score=31.84  Aligned_cols=68  Identities=19%  Similarity=0.180  Sum_probs=36.6

Q ss_pred             hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHH
Q 012184          379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTIENEVQILRQQKSAFEQE  446 (469)
Q Consensus       379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~e~e~~~~~q~~~~~~~~  446 (469)
                      .-|++++.+...|..|....-++|++..+.+..++..+.+.+.+    ...++.++.|+..+..+...+..+
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666666666666666666666666676666543333    333334444444444444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=84.15  E-value=11  Score=39.29  Aligned_cols=17  Identities=29%  Similarity=0.585  Sum_probs=6.5

Q ss_pred             HHHhhhHHHHHHHHHHH
Q 012184          423 LESSQTIENEVQILRQQ  439 (469)
Q Consensus       423 l~~~~~~e~e~~~~~q~  439 (469)
                      |+..+.|++|++...++
T Consensus       215 le~kn~L~~e~~s~kk~  231 (916)
T KOG0249|consen  215 LEDKNRLEQELESVKKQ  231 (916)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333344333333333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.12  E-value=18  Score=34.21  Aligned_cols=19  Identities=21%  Similarity=0.326  Sum_probs=8.6

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQE  446 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~  446 (469)
                      .+..++.+++.++.+.++.
T Consensus       151 ~L~~e~~~Lre~L~~rdel  169 (302)
T PF09738_consen  151 SLREELDELREQLKQRDEL  169 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.92  E-value=15  Score=36.90  Aligned_cols=78  Identities=26%  Similarity=0.330  Sum_probs=41.6

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHH--------HHHHHHHHHHH----HHHhhhHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFK--------LEAQIAELQKM----LESSQTIENEVQILRQQK  440 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~--------~~~~~~e~~~~----l~~~~~~e~e~~~~~q~~  440 (469)
                      +...|++++++++....-.+.|+.+.++.+-+.+..-.+        .+..++|--.+    ++++-++|.|+-++++.+
T Consensus        44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el  123 (772)
T KOG0999|consen   44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL  123 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666666655554221111        11122222111    344446777777777777


Q ss_pred             HHHHHHHHHh
Q 012184          441 SAFEQEMERA  450 (469)
Q Consensus       441 ~~~~~~~~~~  450 (469)
                      .....+.++.
T Consensus       124 ~~~q~E~erl  133 (772)
T KOG0999|consen  124 TNVQEENERL  133 (772)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

>PF15358 TSKS: Testis-specific serine kinase substrate

Probab=83.83  E-value=5.5  Score=38.29  Aligned_cols=30  Identities=33%  Similarity=0.347  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHhh--hHHHHHHHHHHHHH
Q 012184          412 LEAQIAELQKMLESSQ--TIENEVQILRQQKS  441 (469)
Q Consensus       412 ~~~~~~e~~~~l~~~~--~~e~e~~~~~q~~~  441 (469)
                      |+.++.-++++++...  .++.+.+++.|+++
T Consensus       200 LEekLr~lq~qLqdE~prrqe~e~qELeqkle  231 (558)
T PF15358_consen  200 LEEKLRYLQQQLQDETPRRQEAEWQELEQKLE  231 (558)
T ss_pred             HHHHHHHHHHHhcccCcchhhhhHHHHHHHHh
Confidence            3444444444444444  23455555555443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=83.72  E-value=8.9  Score=42.06  Aligned_cols=6  Identities=33%  Similarity=0.706  Sum_probs=2.4

Q ss_pred             EEEEcc
Q 012184           18 MVFDLR   23 (469)
Q Consensus        18 ~~~d~~   23 (469)
                      .+||+.
T Consensus       618 ir~~~~  623 (1758)
T KOG0994|consen  618 IRYDPR  623 (1758)
T ss_pred             eeccCC
Confidence            344443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=83.60  E-value=23  Score=33.63  Aligned_cols=25  Identities=16%  Similarity=0.326  Sum_probs=10.1

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHhh
Q 012184          382 DEVNSTHSELSKELSSVQGQLVAER  406 (469)
Q Consensus       382 ~~~~~~~~e~~~el~~~~~~l~~~~  406 (469)
                      .+..+++..+..++..+++.+.+++
T Consensus        75 ~~sre~Nk~L~~Ev~~Lrqkl~E~q   99 (319)
T PF09789_consen   75 SESREQNKKLKEEVEELRQKLNEAQ   99 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333334444444444444443333

>PRK10780 periplasmic chaperone; Provisional

Probab=83.48  E-value=6.1  Score=33.78  Aligned_cols=27  Identities=11%  Similarity=0.225  Sum_probs=10.7

Q ss_pred             hhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184          376 RFREKIDEVNSTHSELSKELSSVQGQL  402 (469)
Q Consensus       376 ~l~~~~~~~~~~~~e~~~el~~~~~~l  402 (469)
                      +|+.+....+.+++.+..+++...+++
T Consensus        47 ~le~~~~~~q~el~~~~~elq~~~~~~   73 (165)
T PRK10780         47 QLENEFKGRASELQRMETDLQAKMQKL   73 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444333333

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=83.46  E-value=16  Score=28.07  Aligned_cols=8  Identities=25%  Similarity=0.692  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 012184          431 NEVQILRQ  438 (469)
Q Consensus       431 ~e~~~~~q  438 (469)
                      ++++.++.
T Consensus        61 kRV~~LQ~   68 (102)
T PF10205_consen   61 KRVEVLQE   68 (102)
T ss_pred             HHHHHHHH
Confidence            33333333

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=83.38  E-value=15  Score=32.05  Aligned_cols=15  Identities=27%  Similarity=0.346  Sum_probs=6.1

Q ss_pred             HHHHhHHHHhhhhhh
Q 012184          355 AIKEDKRVLELSLTE  369 (469)
Q Consensus       355 ~l~~~~~~~~~~~~~  369 (469)
                      .|+.+...|+..+..
T Consensus       100 rLkrELa~Le~~l~~  114 (195)
T PF12761_consen  100 RLKRELAELEEKLSK  114 (195)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444433333

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=83.37  E-value=29  Score=30.02  Aligned_cols=68  Identities=16%  Similarity=0.227  Sum_probs=42.7

Q ss_pred             CccCcEEEEECCCCeEEEeeeCCC--CCCCCCCceEEEEcCcEEEEEecCCCC--cccCcEEEEECCCCceEeee
Q 012184          127 KLLNDVHFLDLETMTWDAVEVTQT--PPAPRYDHSAALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       127 ~~~~~v~~~d~~t~~W~~~~~~g~--~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~  197 (469)
                      ....++|++|..++.|..+.....  --.|.  + +.-++|..|.|+=|...+  ..-..+|+|++.++.-..+.
T Consensus        85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~-i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly  156 (200)
T PF15525_consen   85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--Y-IEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY  156 (200)
T ss_pred             ccceeEEEEecCCCceEEEEecCcccccCCc--e-eEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence            357789999999998876644211  12344  2 333445555544443322  33468999999999988876

>PRK10698 phage shock protein PspA; Provisional

Probab=83.35  E-value=18  Score=32.59  Aligned_cols=38  Identities=11%  Similarity=0.261  Sum_probs=15.3

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhh
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSE  390 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e  390 (469)
                      ++.+++....+...+-.......++++++++.+..+.+
T Consensus        33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~   70 (222)
T PRK10698         33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE   70 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444443

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=83.34  E-value=30  Score=30.79  Aligned_cols=47  Identities=6%  Similarity=0.196  Sum_probs=24.9

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  399 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~  399 (469)
                      ...+.++...+...+.+.....++....+++++..+++.+.+.++..
T Consensus        74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii  120 (205)
T PRK06231         74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEII  120 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555555555544443

>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []

Probab=83.34  E-value=4.2  Score=40.52  Aligned_cols=47  Identities=28%  Similarity=0.417  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184          408 RCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQ  454 (469)
Q Consensus       408 ~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q  454 (469)
                      ++.+++.+++++.+++++..+.++++.++.+++++.+.+++++++..
T Consensus       250 ~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~  296 (406)
T PF02388_consen  250 KLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI  296 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444555566666666666666666555543

These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=83.29  E-value=14  Score=40.99  Aligned_cols=20  Identities=15%  Similarity=0.313  Sum_probs=10.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~  447 (469)
                      +++.+++.++++++++..+.
T Consensus       671 ~~e~~lk~~q~~~eq~~~E~  690 (1317)
T KOG0612|consen  671 KLERKLKMLQNELEQENAEH  690 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555554443

>KOG3990 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.28  E-value=4.6  Score=36.05  Aligned_cols=18  Identities=28%  Similarity=0.313  Sum_probs=10.1

Q ss_pred             HHHHHHhHHHHhhhhhhh
Q 012184          353 IDAIKEDKRVLELSLTEV  370 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~  370 (469)
                      +.+|+++.+.|...|.+.
T Consensus       227 i~~lkeeia~Lkk~L~qk  244 (305)
T KOG3990|consen  227 IQKLKEEIARLKKLLHQK  244 (305)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            666666666655444333

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.23  E-value=40  Score=31.54  Aligned_cols=204  Identities=19%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             CCCCCCCcc-eEEEEECCEEEEEecc----------------CCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184           98 GKVPVARGG-HSVTLVGSRLIIFGGE----------------DRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  160 (469)
Q Consensus        98 g~~p~~r~~-~~~~~~~~~lyi~GG~----------------~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~  160 (469)
                      |++|..-.. |.++..-+.+++|||+                -.-..-.+-|+.||+.+++-+-+-..+-..+.....-.
T Consensus        29 G~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEV  108 (339)
T PF09910_consen   29 GPPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEV  108 (339)
T ss_pred             cCCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccch


Q ss_pred             EEEc----CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          161 ALHA----NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       161 ~~~~----~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      .-+-    ++.|++.=+.+...  --+|..|.+++.-+.+.   ..|.+   -.+...+...+-+  .+-......+.+|
T Consensus       109 SdIlYdP~~D~LLlAR~DGh~n--LGvy~ldr~~g~~~~L~---~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i~~~  178 (339)
T PF09910_consen  109 SDILYDPYEDRLLLARADGHAN--LGVYSLDRRTGKAEKLS---SNPSL---KGTLVHDYACFGI--NNFHKGVSGIHCL  178 (339)
T ss_pred             hheeeCCCcCEEEEEecCCcce--eeeEEEcccCCceeecc---CCCCc---CceEeeeeEEEec--cccccCCceEEEE


Q ss_pred             ECCCCcE--EEec---cCCCCCCCCCCCcceEEEEEcCCcEEEEE--eccCCCCCceEEEEECC-CCCCCCccccCCCch
Q 012184          237 NMTKLAW--SILT---SVKGRNPLASEGLSVCSAIIEGEHHLVAF--GGYNGKYNNEVFVMRLK-PRDIPRPKIFQSPAA  308 (469)
Q Consensus       237 d~~~~~W--~~~~---~~~~~~p~~r~~~s~~~~~~~~~~~l~v~--GG~~~~~~~~~~~~d~~-~~~w~~~~~~~~~~~  308 (469)
                      |+.+++|  ...+   .+.+.....|..-.++++    .+++|.|  ||        +++.||- .....-...+..+..
T Consensus       179 Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~----ynR~faF~rGG--------i~vgnP~~~e~~~f~RlfDf~~~  246 (339)
T PF09910_consen  179 DLISGKWVIESFDVSLSVDGGPVIRPELGAMASA----YNRLFAFVRGG--------IFVGNPYNGEEFRFYRLFDFPYT  246 (339)
T ss_pred             EccCCeEEEEecccccCCCCCceEeeccccEEEE----eeeEEEEEecc--------EEEeCCCCCCceeEEEeeeccCC


Q ss_pred             hhcchhhhHHHhhcc
Q 012184          309 AAAAASVTAAYALAK  323 (469)
Q Consensus       309 ~~~~~~~~~~~~~gg  323 (469)
                      +-+...++.+..=||
T Consensus       247 ~yap~R~nal~~gGG  261 (339)
T PF09910_consen  247 FYAPFRVNALPIGGG  261 (339)
T ss_pred             ccCcceecceEeCCe

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=83.14  E-value=5.4  Score=37.39  Aligned_cols=25  Identities=12%  Similarity=0.331  Sum_probs=9.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184          423 LESSQTIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       423 l~~~~~~e~e~~~~~q~~~~~~~~~  447 (469)
                      |+...+.|+.+++...+.+++..++
T Consensus       237 lqteaqvek~i~EfdiEre~LRAel  261 (561)
T KOG1103|consen  237 LQTEAQVEKLIEEFDIEREFLRAEL  261 (561)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444443333333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=83.05  E-value=10  Score=38.65  Aligned_cols=10  Identities=30%  Similarity=0.338  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q 012184          432 EVQILRQQKS  441 (469)
Q Consensus       432 e~~~~~q~~~  441 (469)
                      ..+.|.+++.
T Consensus       205 ~~q~Lleel~  214 (546)
T KOG0977|consen  205 RVQTLLEELA  214 (546)
T ss_pred             HHHHHHHHHH
Confidence            3334444444

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.93  E-value=18  Score=32.49  Aligned_cols=26  Identities=0%  Similarity=0.203  Sum_probs=11.2

Q ss_pred             hhhhhhhhhhhHhhhhhhhcchhhHH
Q 012184          367 LTEVRTENSRFREKIDEVNSTHSELS  392 (469)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~~~e~~  392 (469)
                      +........++++++++.+..+.+.+
T Consensus        47 lA~~~a~~k~~e~~~~~~~~~~~~~~   72 (219)
T TIGR02977        47 SARTIADKKELERRVSRLEAQVADWQ   72 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.89  E-value=17  Score=35.74  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184          418 ELQKMLESSQTIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       418 e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      ..+++.+.+.+...+-.++|+++..+.+.++
T Consensus       397 niRKq~~DI~Kil~etreLqkq~ns~se~L~  427 (521)
T KOG1937|consen  397 NIRKQEQDIVKILEETRELQKQENSESEALN  427 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555566666666777777776666654

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=82.87  E-value=28  Score=29.41  Aligned_cols=45  Identities=18%  Similarity=0.186  Sum_probs=20.8

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS  397 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~  397 (469)
                      ...+.++...+...+.+......+.....+++++.+.+.+.+..+
T Consensus        48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~   92 (156)
T CHL00118         48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQL   92 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444544444444444444444444444444444444444333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=82.86  E-value=36  Score=30.78  Aligned_cols=140  Identities=21%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             cCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcE
Q 012184           54 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDV  132 (469)
Q Consensus        54 ~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v  132 (469)
                      .......-.|.|++.||.+       .+|..|+.+++....-    --..-+-|+++..+.. =++-|+.++      .+
T Consensus       118 Nam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~EDG------tv  180 (325)
T KOG0649|consen  118 NAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGAEDG------TV  180 (325)
T ss_pred             ceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecCCCc------cE
Confidence            3344444588999999743       3899999999977654    1122334444443322 233454443      26


Q ss_pred             EEEECCCCeEEEe-eeCC--CCCCCCCCc--eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc
Q 012184          133 HFLDLETMTWDAV-EVTQ--TPPAPRYDH--SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA  207 (469)
Q Consensus       133 ~~~d~~t~~W~~~-~~~g--~~p~~r~~~--~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~  207 (469)
                      .++|..|.+-..+ .+..  .+..|-.+-  .+...+.+ -++.||.      ..+-.+++.+.+-+.+-     |.|-.
T Consensus       181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgG------p~lslwhLrsse~t~vf-----pipa~  248 (325)
T KOG0649|consen  181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGG------PKLSLWHLRSSESTCVF-----PIPAR  248 (325)
T ss_pred             EEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCC------CceeEEeccCCCceEEE-----ecccc
Confidence            7788888765443 2211  122222333  33333344 4455543      23445565555444432     33333


Q ss_pred             ceEEEEECCEEEEEe
Q 012184          208 GHAGITIDENWYIVG  222 (469)
Q Consensus       208 ~~~~~~~~~~l~v~G  222 (469)
                      -|-+..+++.+++.|
T Consensus       249 v~~v~F~~d~vl~~G  263 (325)
T KOG0649|consen  249 VHLVDFVDDCVLIGG  263 (325)
T ss_pred             eeEeeeecceEEEec
Confidence            333344455555555

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=82.81  E-value=12  Score=30.25  Aligned_cols=48  Identities=15%  Similarity=0.285  Sum_probs=20.4

Q ss_pred             hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      .+-.++++..+..+..+.++.+++..+...+..+..++.-+..|+.++
T Consensus        72 ~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki  119 (126)
T PF07889_consen   72 RVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI  119 (126)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444333

The region featured in this family is approximately 100 amino acids long.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=82.75  E-value=47  Score=31.93  Aligned_cols=102  Identities=15%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCC---CCCcceEEEEECCCCeE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKK---SSDSMIVRFIDLETNLC   91 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~---~~~~~~~~~~d~~t~~W   91 (469)
                      .+++||..+++-.-.-                  +.+-.++.+..- +..+|+..-+-+.   +..+..+..||+.|..-
T Consensus        18 rv~viD~d~~k~lGmi------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~   79 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMI------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP   79 (342)
T ss_dssp             EEEEEETTTTEEEEEE------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred             eEEEEECCCCcEEEEe------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence            7899999888743333                  334555544444 5567766543322   22567799999999964


Q ss_pred             EEeecCCCCCC-CCcc------eEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEE
Q 012184           92 GVMETSGKVPV-ARGG------HSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWD  143 (469)
Q Consensus        92 ~~~~~~g~~p~-~r~~------~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~  143 (469)
                      ..=.   .+|. +|..      .....-++ .+|++-     -....+|.+.|+...+.-
T Consensus        80 ~~EI---~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv  131 (342)
T PF06433_consen   80 TGEI---EIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVV  131 (342)
T ss_dssp             EEEE---EETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEE
T ss_pred             cceE---ecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCcee
Confidence            3311   1222 2332      22222234 566652     124667999999887753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=82.60  E-value=56  Score=32.76  Aligned_cols=140  Identities=12%  Similarity=0.097  Sum_probs=67.8

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      ..++.+|+.++.-..+..   .+.. .......-+++ |++....++    ..++|.+|+.+.....+...   ..  ..
T Consensus       228 ~~i~i~dl~tg~~~~l~~---~~g~-~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~~--~~  294 (429)
T PRK01742        228 SQLVVHDLRSGARKVVAS---FRGH-NGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSG---AG--NN  294 (429)
T ss_pred             cEEEEEeCCCCceEEEec---CCCc-cCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccC---CC--Cc
Confidence            348999998887666652   2211 11111112444 444332222    23589999988877665421   11  11


Q ss_pred             ceEEEEcCcE-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          158 HSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       158 ~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      .......|+. |++......   ...+|.++..+..-..+.  .   .. .. ....-+++.+++.+.      +.++.+
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~--~---~~-~~-~~~SpDG~~ia~~~~------~~i~~~  358 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG--G---RG-YS-AQISADGKTLVMING------DNVVKQ  358 (429)
T ss_pred             CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec--C---CC-CC-ccCCCCCCEEEEEcC------CCEEEE
Confidence            2222223444 444332222   246788777655433321  1   11 11 111114444444332      357889


Q ss_pred             ECCCCcEEEec
Q 012184          237 NMTKLAWSILT  247 (469)
Q Consensus       237 d~~~~~W~~~~  247 (469)
                      |+.+..+..+.
T Consensus       359 Dl~~g~~~~lt  369 (429)
T PRK01742        359 DLTSGSTEVLS  369 (429)
T ss_pred             ECCCCCeEEec
Confidence            99998887654

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=82.46  E-value=16  Score=39.62  Aligned_cols=42  Identities=19%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA  414 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~  414 (469)
                      ++.++.+-+....+....+..++..++.++.+.-+++.+++.
T Consensus       398 ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~  439 (1200)
T KOG0964|consen  398 EIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELES  439 (1200)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444444444444444444444444433

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=82.22  E-value=25  Score=30.67  Aligned_cols=52  Identities=13%  Similarity=0.175  Sum_probs=30.9

Q ss_pred             hhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          365 LSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      ..|.....-.++|+.++.+.+..+++....|+..+........-..+.+.++
T Consensus        60 AaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~  111 (188)
T PF05335_consen   60 AALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQL  111 (188)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666777777777777777777666666555554444333333333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=82.12  E-value=16  Score=36.99  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 012184          430 ENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       430 e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      ..++.+.++++...+.+++.+
T Consensus       290 ~~~l~~~~~~l~~~~~~l~~a  310 (457)
T TIGR01000       290 KQEITDLNQKLLELESKIKSL  310 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555544433

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=81.87  E-value=21  Score=27.53  Aligned_cols=34  Identities=29%  Similarity=0.294  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          408 RCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  441 (469)
Q Consensus       408 ~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~  441 (469)
                      ...+++++..+++..++++..+++++.++.+--.
T Consensus        50 ~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~   83 (99)
T PF10046_consen   50 NLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVY   83 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555554444444443333

>KOG3215 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.87  E-value=19  Score=31.34  Aligned_cols=32  Identities=13%  Similarity=0.168  Sum_probs=13.1

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          386 STHSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      +++.+..+-..+.+.+.++.+.+...+..++.
T Consensus        89 re~e~~~q~k~Eiersi~~a~~kie~lkkql~  120 (222)
T KOG3215|consen   89 REIENLVQKKLEIERSIQKARNKIELLKKQLH  120 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=81.62  E-value=19  Score=39.03  Aligned_cols=9  Identities=11%  Similarity=0.098  Sum_probs=4.5

Q ss_pred             CcEEEEEec
Q 012184          270 EHHLVAFGG  278 (469)
Q Consensus       270 ~~~l~v~GG  278 (469)
                      +++.+|--|
T Consensus       134 NPYyIV~QG  142 (1200)
T KOG0964|consen  134 NPYYIVPQG  142 (1200)
T ss_pred             CCceEeech
Confidence            345555555

>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this

Probab=81.25  E-value=6.8  Score=37.27  Aligned_cols=19  Identities=21%  Similarity=0.260  Sum_probs=8.2

Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 012184          426 SQTIENEVQILRQQKSAFE  444 (469)
Q Consensus       426 ~~~~e~e~~~~~q~~~~~~  444 (469)
                      ++++++++.+.+..+..+|
T Consensus        70 i~~L~~~Ik~r~~~l~DmE   88 (330)
T PF07851_consen   70 IEKLEEDIKERRCQLFDME   88 (330)
T ss_pred             HHHHHHHHHHHHhhHHHHH
Confidence            3344444444444444443

; GO: 0016021 integral to membrane

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.03  E-value=15  Score=35.53  Aligned_cols=37  Identities=14%  Similarity=0.097  Sum_probs=20.2

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC  409 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~  409 (469)
                      +...++.+........++.|-+|+.+|.++.++.+++
T Consensus        35 q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~   71 (459)
T KOG0288|consen   35 QLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER   71 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444455555666666666666666654443

>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli

Probab=81.03  E-value=23  Score=28.13  Aligned_cols=42  Identities=12%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH
Q 012184          406 RSRCFKLEAQIAELQKMLESSQT--IENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       406 ~~~~~~~~~~~~e~~~~l~~~~~--~e~e~~~~~q~~~~~~~~~  447 (469)
                      +.++.+.+.+|.|.+.+|+..+.  -...+...++++.....+|
T Consensus        69 q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL  112 (115)
T PF06476_consen   69 QQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAEL  112 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            45555566666666666655552  1144444444444444444

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=80.95  E-value=35  Score=29.35  Aligned_cols=47  Identities=11%  Similarity=0.190  Sum_probs=24.2

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  399 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~  399 (469)
                      ...+.++...+...+........+.....++.+..+.+.+.+.+++.
T Consensus        44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii   90 (173)
T PRK13453         44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKIL   90 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555544443

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=80.94  E-value=12  Score=36.12  Aligned_cols=11  Identities=27%  Similarity=0.453  Sum_probs=4.4

Q ss_pred             hhHHHHHHhHH
Q 012184          351 TDIDAIKEDKR  361 (469)
Q Consensus       351 ~~~~~l~~~~~  361 (469)
                      .++.++++++.
T Consensus       107 kkiqal~keke  117 (552)
T KOG2129|consen  107 KKIQALFKEKE  117 (552)
T ss_pred             HHHHHhhcccc
Confidence            33444444333

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=80.88  E-value=36  Score=29.36  Aligned_cols=48  Identities=8%  Similarity=0.172  Sum_probs=26.6

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  400 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~  400 (469)
                      ...+.++...+...+........+....+++++..+++.+.+.++...
T Consensus        44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~   91 (175)
T PRK14472         44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIR   91 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555666555555555566666666555555554433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=80.86  E-value=11  Score=40.93  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184          392 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~  447 (469)
                      +.+.+..+.+...++.++.+++.++.++-+...+..+|+++.+..++..+.+.+.+
T Consensus       344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~  399 (754)
T TIGR01005       344 LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNY  399 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444444333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=80.82  E-value=15  Score=31.00  Aligned_cols=47  Identities=26%  Similarity=0.308  Sum_probs=20.4

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERS---RCFKLEAQIAELQKML  423 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~---~~~~~~~~~~e~~~~l  423 (469)
                      .+.++...+.++..++.+|.....++..++.   -..+|+.++++++.+.
T Consensus        18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~   67 (155)
T PF06810_consen   18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN   67 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444433   3344444444444443

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=80.72  E-value=13  Score=31.32  Aligned_cols=9  Identities=11%  Similarity=0.398  Sum_probs=3.2

Q ss_pred             hhhhhhhcc
Q 012184          379 EKIDEVNST  387 (469)
Q Consensus       379 ~~~~~~~~~  387 (469)
                      .++.+++..
T Consensus        34 ~ql~~~d~~   42 (155)
T PF06810_consen   34 TQLKEADKQ   42 (155)
T ss_pred             HHHHHHHHH
Confidence            333333333

The function of this family is unknown.; GO: 0005198 structural molecule activity

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=80.70  E-value=26  Score=36.42  Aligned_cols=11  Identities=18%  Similarity=-0.118  Sum_probs=5.7

Q ss_pred             EEEccCCceee
Q 012184           19 VFDLRSLAWSN   29 (469)
Q Consensus        19 ~~d~~~~~W~~   29 (469)
                      .||+..+-|.+
T Consensus        34 ~~~~~~Gg~d~   44 (961)
T KOG4673|consen   34 NFDNALGGDDK   44 (961)
T ss_pred             cCCcccCCCCc
Confidence            34555555544

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=80.60  E-value=28  Score=27.99  Aligned_cols=19  Identities=21%  Similarity=0.487  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 012184          429 IENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~~~~  447 (469)
                      +..++..++..++.++..+
T Consensus        86 l~~~l~~l~~~~~k~e~~l  104 (126)
T PF13863_consen   86 LKAELEELKSEISKLEEKL  104 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444433

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=80.51  E-value=14  Score=28.42  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=9.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      .|.=..++|.+..+.+..+++
T Consensus        51 SL~FrN~QL~kRV~~LQ~El~   71 (102)
T PF10205_consen   51 SLTFRNQQLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=80.39  E-value=21  Score=35.04  Aligned_cols=106  Identities=21%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             CCCCCccccchhhhHHHHHHhHHHHhhhhhhhhh----hhhhhHhhhhhhhcchhhHHHHHHH----HHHHHHHhhhHHH
Q 012184          339 GIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRT----ENSRFREKIDEVNSTHSELSKELSS----VQGQLVAERSRCF  410 (469)
Q Consensus       339 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~e~~~el~~----~~~~l~~~~~~~~  410 (469)
                      ..........+..++.++++....++..+...+.    +...+.+.+++..-+.+.++.++.+    .+.+...+|+.+.
T Consensus       207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa  286 (395)
T PF10267_consen  207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELA  286 (395)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHH--------HHHHHHHHhhhHHHHHH-HHHHHHHHHH
Q 012184          411 KLEAQIA--------ELQKMLESSQTIENEVQ-ILRQQKSAFE  444 (469)
Q Consensus       411 ~~~~~~~--------e~~~~l~~~~~~e~e~~-~~~q~~~~~~  444 (469)
                      ..+..++        ++++-++..|..-..+| +.+|+..++|
T Consensus       287 ~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e  329 (395)
T PF10267_consen  287 SMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLE  329 (395)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhc

Its function is unknown.

>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []

Probab=80.38  E-value=3.4  Score=38.08  Aligned_cols=37  Identities=16%  Similarity=0.288  Sum_probs=19.2

Q ss_pred             hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh
Q 012184          369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  405 (469)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~  405 (469)
                      ..+..+..|+++...+...+..++.++++.+.+|+..
T Consensus       177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~  213 (259)
T PF08657_consen  177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM  213 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555555555555555444

In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=80.36  E-value=15  Score=30.83  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=19.2

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHH
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQL--VAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l--~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ..++.++++++......+.|+..+...|  .+.|+.+++|..++.+-+++|
T Consensus        89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl  139 (201)
T KOG4603|consen   89 VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERL  139 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444434444444444333322  222344444444444444443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=80.26  E-value=21  Score=33.73  Aligned_cols=52  Identities=19%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  426 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~  426 (469)
                      ..|+.+++++++.+.++.++..+...++..++.....++.++.+++.++.+.
T Consensus       115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r  166 (302)
T PF09738_consen  115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR  166 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555565655555555443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=80.18  E-value=38  Score=29.24  Aligned_cols=28  Identities=18%  Similarity=0.258  Sum_probs=13.8

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQG  400 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~  400 (469)
                      +.++++.+.+.+.+.++|...+|..++.
T Consensus        43 DFeqLkien~~l~~kIeERn~eL~~Lk~   70 (177)
T PF13870_consen   43 DFEQLKIENQQLNEKIEERNKELLKLKK   70 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555444443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=80.03  E-value=25  Score=38.29  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=0.0

Q ss_pred             hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---
Q 012184          351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---  427 (469)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~---  427 (469)
                      .++....+....+-....+...+...++..++...+.+.....++..+.....+++++..+...+...+.++++.+.   
T Consensus       460 ~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l  539 (1195)
T KOG4643|consen  460 SRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELL  539 (1195)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184          428 -TIENEVQILRQQKSAFEQEMERATSVQTQ  456 (469)
Q Consensus       428 -~~e~e~~~~~q~~~~~~~~~~~~~~~q~q  456 (469)
                       -+|+|.+.++.+++.+... .+-..+.+|
T Consensus       540 ~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq  568 (1195)
T KOG4643|consen  540 GNLEEENAHLLKQIQSLKTT-SQNGALLEQ  568 (1195)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-hHHHHHHHH

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	469
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		5e-04

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 17/219 (7%)
Query: 64  KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 123
           ++ ++GG+  +S  S  V  +D   +  GV  +   + V RG    T +G  + + GG D
Sbjct: 64  RIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 124 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL 183
            SR+  +   + D     W  +   QT      + +  + A+  +   GG       N +
Sbjct: 123 GSRRHTSMERY-DPNIDQWSMLGDMQTAR----EGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 184 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 243
              D  T  W+       + T R+G     ++++ Y+VGG D           N+   +W
Sbjct: 178 EKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 244 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 282
           + +TS      + +    V + ++ G   L A  GY+G 
Sbjct: 235 TTVTS------MTTPRCYVGATVLRGR--LYAIAGYDGN 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	469
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-41
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-34
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-29
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	9e-29
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	8e-23
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	7e-22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-16
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	9e-15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-20
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-15
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-16
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	4e-17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	9e-15
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-15
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-13
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	6e-06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	1e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	8e-06
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	6e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	8e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  156 bits (395), Expect = 1e-41
 Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 31/282 (10%)

Query: 56  HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGGHSVTLV 112
             +   G  +  +GG      + ++   + +  +   +  +  +S +VPVAR  H+ T +
Sbjct: 391 GDVDVAGNDVFYMGGSNPYRVNEILQ--LSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI 448

Query: 113 G--SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 170
              ++L++ GG     + L+D    D++T  W    + ++    R+ HSA    +  +++
Sbjct: 449 SRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW---SMIKSLSHTRFRHSACSLPDGNVLI 505

Query: 171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW---YIVGGGDNN 227
            GG +       + + ++    +     K +        AG+  D       I+GGG  +
Sbjct: 506 LGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD 562

Query: 228 NGC----QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-- 281
                        +       I    K ++PL     S    I      L+  GG +   
Sbjct: 563 QTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI--TPRKLLIVGGTSPSG 620

Query: 282 --KYNNEVFV-----MRLKPRDIPRPKIFQSPAAAAAAASVT 316
                N +         L    I R          A  + V+
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS 662

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  136 bits (343), Expect = 1e-34
 Identities = 50/302 (16%), Positives = 102/302 (33%), Gaps = 21/302 (6%)

Query: 27  WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 86
           W +    T+ +  K E    LE       H ++   T             D  I      
Sbjct: 313 WESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINL- 371

Query: 87  ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 146
            T          + P+ R    V + G+ +   GG +  R  +N++  L +     D   
Sbjct: 372 -TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSIHYDKIDMKN 428

Query: 147 VTQTP---PAPRYDHSA-ALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGD 201
           +  +    P  R  H+   +  N  L++ GG  +     +D  + D++T EWS       
Sbjct: 429 IEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI---KS 485

Query: 202 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 261
           L   R  H+  ++ +   ++ GG         ++ N+T+  +  +T  K      S   +
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVT-PKDEFFQNSLVSA 542

Query: 262 VCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRD----IPRPKIFQSPAAAAAAASV 315
                   +  ++  GG+  +   +++  + +    +    I   K  Q P      + +
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602

Query: 316 TA 317
             
Sbjct: 603 KY 604

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  121 bits (304), Expect = 1e-29
 Identities = 35/277 (12%), Positives = 73/277 (26%), Gaps = 32/277 (11%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM--VKWGTKLLILGGHYKK 74
           ++   +         +E              EV      H    +    +LL++GG    
Sbjct: 414 ILQLSIHYDKIDMKNIEVSSS----------EVPVARMCHTFTTISRNNQLLLIGGRKAP 463

Query: 75  SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVH 133
                     D++T           +   R  HS   +    ++I GG          + 
Sbjct: 464 HQGLSDNWIFDMKTR---EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----PAML 516

Query: 134 FLDLETMTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFND-LHVLDLQ 189
             ++    +  V             +         + +I+ GG       +D   +    
Sbjct: 517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576

Query: 190 TNEWSQPEIK----GDLVTGRAGHAGITIDENWYIVGGGDNNNGC----QETIVLNMTKL 241
               ++P          +  R G     I     ++ GG + +G        I L+    
Sbjct: 577 AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636

Query: 242 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 278
             + +   +      S  L+  S +      +   GG
Sbjct: 637 TLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  119 bits (298), Expect = 9e-29
 Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 39/228 (17%)

Query: 17  VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP-PMSDHCMVKWG-TKLLILGGHYKK 74
             +FD+++  WS                 +++ L      H         +LILGG    
Sbjct: 470 NWIFDMKTREWS-----------------MIKSLSHTRFRHSACSLPDGNVLILGG---V 509

Query: 75  SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHS---VTLVGSRL-IIFGGEDRSRKLLN 130
           +    ++ + ++   +   +    +        +      V  +  I+ GG      + +
Sbjct: 510 TEGPAMLLY-NVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568

Query: 131 DVHFLDLE----TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF---NDL 183
                  +    T     ++  Q P   RY         R L++ GG S S  F   N +
Sbjct: 569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628

Query: 184 HVLDLQTNEWSQPEIKGDLVTG----RAGHAGITIDEN-WYIVGGGDN 226
             LD  +   +   I   +        AG + ++      +I+GGG  
Sbjct: 629 ISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 98.5 bits (245), Expect = 8e-23
 Identities = 43/293 (14%), Positives = 78/293 (26%), Gaps = 50/293 (17%)

Query: 50  LP-PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHS 108
            P P            + I  G     S       +D +         +      R   +
Sbjct: 6   TPVPFKSGTGAIDNDTVYIGLG-----SAGTAWYKLDTQAKDKKWTALAAFPGGPRDQAT 60

Query: 109 VTLVGSRLIIFGG----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA 164
              +   L +FGG     +   ++ NDVH  + +T +W  V++    P     H   +H 
Sbjct: 61  SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW--VKLMSHAPMGMAGHVTFVHN 118

Query: 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP---------------------------- 196
            +   V GG + +IF      L+    + +                              
Sbjct: 119 GK-AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177

Query: 197 ---EIKGDL-VTGRAGHAGITIDENWYIVGGGDNNNG-CQETIVLNMTKLAWSILTSVKG 251
                 G+    G AG A +   +  +++ G             L+ T            
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237

Query: 252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ 304
            +P    G     +       L+  GG   K + E +            K + 
Sbjct: 238 SSPDGVAGGFAGIS----NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS 286

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 82.7 bits (204), Expect = 2e-17
 Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 20/152 (13%)

Query: 102 VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAA 161
               G +V   G +  +  GE +     + V  LD         ++             A
Sbjct: 189 YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248

Query: 162 LHANRYLIVFGGCSHS-----------------IFFNDLHVLDLQTNEWSQPEIKGDLVT 204
             +N  LI  GG                            +      +W +    G+L  
Sbjct: 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK---SGELSQ 305

Query: 205 GRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236
           GRA    +  + +  I+GG           VL
Sbjct: 306 GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 41/301 (13%), Positives = 77/301 (25%), Gaps = 71/301 (23%)

Query: 51  PPMSDHCMVKWGTKLLILGGHYKKSSDSMIV-----RFIDLETN----LCGVMETSGKVP 101
            P            L + GG  K S     V     ++ + +TN    L          P
Sbjct: 54  GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKY-NPKTNSWVKLMSHA------P 106

Query: 102 VARGGHSVTLVGSRLIIFGGEDRSRKL--------------------------------- 128
           +   GH   +   +  + GG +++                                    
Sbjct: 107 MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF 166

Query: 129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLD 187
              +   D  T  W      ++P       +          +  G     +  + +  LD
Sbjct: 167 NKFLLSFDPSTQQW--SYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELD 223

Query: 188 LQTNEWSQPEIKGDLV-TGRAGHAGITIDENWYIVG-----GGDNNNGCQETIVLNMTKL 241
              N     ++       G AG      +++    G     G   N    +       K 
Sbjct: 224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKK 283

Query: 242 AWSILTSVKGRN------PLASEGLS-VCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRL 292
           ++S    +           L S+G +   S        L+  GG    GK   +  ++ +
Sbjct: 284 SYSTDIHLWHNGKWDKSGEL-SQGRAYGVSLPWNNS--LLIIGGETAGGKAVTDSVLITV 340

Query: 293 K 293
           K
Sbjct: 341 K 341

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 23/162 (14%), Positives = 41/162 (25%), Gaps = 22/162 (13%)

Query: 51  PPMSDHCMVKWGTKLLILGGHYKKSSDSMIV-RFIDLETNLCGVMETSGKVPVARGGHSV 109
              +   +V  G K  ++ G  K    +  V        NL          P    G   
Sbjct: 189 YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248

Query: 110 TLVGSRLIIFGGEDRS----------------RKLLNDVHFLDLETMTWDAVEVTQTPPA 153
            +    LI  GG                     K              W   + +     
Sbjct: 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW---DKSGELSQ 305

Query: 154 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWS 194
            R    +    N  L++ GG +       D  ++ ++ N+ +
Sbjct: 306 GRAYGVSLPWNNS-LLIIGGETAGGKAVTDSVLITVKDNKVT 346

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 10/58 (17%), Positives = 20/58 (34%)

Query: 95  ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP 152
           + SG++   R         + L+I GGE    K + D   + ++        +     
Sbjct: 298 DKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH 355

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 94.7 bits (236), Expect = 7e-22
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 50  LPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG 105
           LP +         V    ++ ++GG+  +S  S +    D   +  GV  +   + V RG
Sbjct: 46  LPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL-DYTADEDGVWYSVAPMNVRRG 104

Query: 106 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHA 164
               T +G  + + GG D SR     +   D     W  +          R      +  
Sbjct: 105 LAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSML----GDMQTAREGAGLVVA- 158

Query: 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG 224
           +  +   GG       N +   D  T  W+       + T R+G     ++++ Y+VGG 
Sbjct: 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMATKRSGAGVALLNDHIYVVGGF 215

Query: 225 DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281
           D           N+   +W+ +T       + +    V + ++ G   L A  GY+G
Sbjct: 216 DGTAHLSSVEAYNIRTDSWTTVT------SMTTPRCYVGATVLRG--RLYAIAGYDG 264

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 48/224 (21%), Positives = 76/224 (33%), Gaps = 28/224 (12%)

Query: 64  KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 123
            LL++GG   + S   +V   D +T           +   R   +   +  R+ + GG D
Sbjct: 16  VLLVVGGFGSQQSPIDVVEKYDPKTQEW---SFLPSITRKRRYVASVSLHDRIYVIGGYD 72

Query: 124 RSRKLLNDVHFLDL---ETMTWDAVEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSI 178
             R  L+ V  LD    E   W         P    R    A    +  + V GG   S 
Sbjct: 73  -GRSRLSSVECLDYTADEDGVW-----YSVAPMNVRRGLAGATTLGDM-IYVSGGFDGSR 125

Query: 179 FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI-VLN 237
               +   D   ++WS     GD+ T R G   +      Y +GG D  N    ++   +
Sbjct: 126 RHTSMERYDPNIDQWSM---LGDMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYD 181

Query: 238 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281
                W+ +T +         G  V         H+   GG++G
Sbjct: 182 PHTGHWTNVTPM----ATKRSGAGVALL----NDHIYVVGGFDG 217

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 48  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKV 100
            +L  M        +V     +  LGG+   +  + + ++ D  T        M      
Sbjct: 141 SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY-DPHTGHWTNVTPM------ 193

Query: 101 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHS 159
              R G  V L+   + + GG D +   L+ V   ++ T +W  V    T    PR    
Sbjct: 194 ATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDSWTTV----TSMTTPRCYVG 248

Query: 160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 216
           A +   R L    G   +   + +   D   + W    +   + T R       + E
Sbjct: 249 ATVLRGR-LYAIAGYDGNSLLSSIECYDPIIDSWE---VVTSMGTQRCDAGVCVLRE 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 17/184 (9%)

Query: 101 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP--PAPRYDH 158
              R    +      L++ GG    +  ++ V   D +T  W     +  P     R   
Sbjct: 3   QGPRTRARLGANE-VLLVVGGFGSQQSPIDVVEKYDPKTQEW-----SFLPSITRKRRYV 56

Query: 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 218
           ++    +R + V GG       + +  LD   +E         +   R      T+ +  
Sbjct: 57  ASVSLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMI 115

Query: 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 278
           Y+ GG D +         +     WS+L        + +        +  G   +   GG
Sbjct: 116 YVSGGFDGSRRHTSMERYDPNIDQWSMLG------DMQTAREGAGLVVASG--VIYCLGG 167

Query: 279 YNGK 282
           Y+G 
Sbjct: 168 YDGL 171

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 26/208 (12%)

Query: 50  LPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPV 102
           + PM            G  + + GG       + + R+ D   +   + G M        
Sbjct: 96  VAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERY-DPNIDQWSMLGDM------QT 148

Query: 103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP--APRYDHSA 160
           AR G  + +    +   GG D    L N V   D  T  W     T   P    R     
Sbjct: 149 AREGAGLVVASGVIYCLGGYDGLNIL-NSVEKYDPHTGHW-----TNVTPMATKRSGAGV 202

Query: 161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI 220
           AL  N ++ V GG   +   + +   +++T+ W+       + T R       +    Y 
Sbjct: 203 ALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT---VTSMTTPRCYVGATVLRGRLYA 258

Query: 221 VGGGDNNNGCQETIVLNMTKLAWSILTS 248
           + G D N+        +    +W ++TS
Sbjct: 259 IAGYDGNSLLSSIECYDPIIDSWEVVTS 286

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 44/244 (18%), Positives = 70/244 (28%), Gaps = 34/244 (13%)

Query: 50  LPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFI---DLETN---LCGVMETSGK 99
           L  +    S       G  L  +GG       +     +   +  TN    C  M     
Sbjct: 54  LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM----- 108

Query: 100 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDH 158
             V R    V ++   +   GG        N V   + E   W  V     P    R   
Sbjct: 109 -SVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLV----APMLTRRIGV 162

Query: 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 218
             A+     L   GG   +   N       + NEW        + T R+G     +    
Sbjct: 163 GVAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIRSGAGVCVLHNCI 218

Query: 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 278
           Y  GG D  +        ++    W+ +  +          L +   + +G   +   GG
Sbjct: 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRRSALGIT--VHQG--RIYVLGG 270

Query: 279 YNGK 282
           Y+G 
Sbjct: 271 YDGH 274

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 89.7 bits (223), Expect = 4e-20
 Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 28/237 (11%)

Query: 50  LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSV 109
           L P   H   K G  +   GG++++S     +   +              + V R G + 
Sbjct: 13  LVPRGSHA-PKVGRLIYTAGGYFRQSLSY--LEAYNPSNGTW---LRLADLQVPRSGLAG 66

Query: 110 TLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMTWDAVEVTQTPP--APRYDHSAALHA 164
            +VG  L   GG + S       + +   +  T  W     +   P   PR      +  
Sbjct: 67  CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW-----SPCAPMSVPRNRIGVGVID 121

Query: 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG 224
              +   GG    I  N +   + + +EW        ++T R G     ++   Y VGG 
Sbjct: 122 GH-IYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTRRIGVGVAVLNRLLYAVGGF 177

Query: 225 DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281
           D  N           +  W ++T++         G  VC       + + A GGY+G
Sbjct: 178 DGTNRLNSAECYYPERNEWRMITAM----NTIRSGAGVCVL----HNCIYAAGGYDG 226

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 24/171 (14%)

Query: 48  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKV 100
            ++ PM        +      L  +GG    +  +    +   E N   +   M      
Sbjct: 150 HLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY-YPERNEWRMITAM------ 202

Query: 101 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHS 159
              R G  V ++ + +   GG D     LN V   D+ET TW  V     P    R    
Sbjct: 203 NTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFV----APMKHRRSALG 257

Query: 160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 210
             +H  R + V GG     F + +   D  T+ WS       + +GR+G  
Sbjct: 258 ITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWS---EVTRMTSGRSGVG 304

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 30/223 (13%)

Query: 50  LPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPV 102
             PM    +   +      +  +GG +     + + R+ + E +   L   M        
Sbjct: 105 CAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERY-EPERDEWHLVAPM------LT 157

Query: 103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP--APRYDHSA 160
            R G  V ++   L   GG D + +L N       E   W              R     
Sbjct: 158 RRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEW-----RMITAMNTIRSGAGV 211

Query: 161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI 220
            +  +  +   GG       N +   D++T  W+       +   R+           Y+
Sbjct: 212 CVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAPMKHRRSALGITVHQGRIYV 267

Query: 221 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC 263
           +GG D +         +     WS +T +         G+ V 
Sbjct: 268 LGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVGVA 306

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 39/244 (15%), Positives = 72/244 (29%), Gaps = 36/244 (14%)

Query: 50  LPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPV 102
           +        D   V W   + ILGG          +   ++  +              P 
Sbjct: 39  IRCPFEKRRDAACVFWDNVVYILGGSQLFPIKR--MDCYNVVKDSWYSKLGP------PT 90

Query: 103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAA 161
            R   +      ++   GG +     L      D  T +W             R  H   
Sbjct: 91  PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK----PSMLTQRCSHGMV 146

Query: 162 LHANRYLIVFGGC----SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 217
              N  + V GG           N   V D  T  W++      ++  R  H  + + + 
Sbjct: 147 EA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIEARKNHGLVFVKDK 202

Query: 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG 277
            + VGG +   G       ++    W +++      P+  +G++V  A +     +    
Sbjct: 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVS------PMPWKGVTVKCAAVGS--IVYVLA 254

Query: 278 GYNG 281
           G+ G
Sbjct: 255 GFQG 258

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 32/197 (16%)

Query: 48  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFI---DLETN---LCGVMETS 97
              P M      H MV+    + + GG    +    ++      D  T        M   
Sbjct: 131 HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM--- 187

Query: 98  GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRY 156
                AR  H +  V  ++   GG++     L++V + D++   W  V    +P P    
Sbjct: 188 ---IEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMV----SPMPWKGV 239

Query: 157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 216
               A   +  + V  G         +   + +T++W        +         I +  
Sbjct: 240 TVKCAAVGSI-VYVLAGFQGVGRLGHILEYNTETDKWV---ANSKVRAFPVTSCLICV-- 293

Query: 217 NWYIVGGGDNNNGCQET 233
                 G   N    ET
Sbjct: 294 --VDTCGA--NEETLET 306

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 88.1 bits (219), Expect = 1e-19
 Identities = 51/315 (16%), Positives = 90/315 (28%), Gaps = 71/315 (22%)

Query: 1   MLLRCSIRNYTLLEGVVMV--------------FDLRSLAWSNLRLETELDADKTEDSGL 46
           M +R  +R    L  +++V              +D +   W  +                
Sbjct: 2   MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQV---------------- 45

Query: 47  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGK 99
                 +        MV     +  +GG         +  + D   +       M     
Sbjct: 46  ----AELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSY-DPVKDQWTSVANM----- 95

Query: 100 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDH 158
               R      ++   L   GG D S  L + V   ++++  W  V     P    R   
Sbjct: 96  -RDRRSTLGAAVLNGLLYAVGGFDGSTGL-SSVEAYNIKSNEWFHV----APMNTRRSSV 149

Query: 159 SAALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 216
              +     L   GG   +     + +   +  TNEW+      ++ T R+G     ++ 
Sbjct: 150 GVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRSGAGVGVLNN 205

Query: 217 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEGEHHLVA 275
             Y VGG D     +   V + T  AW  +  +   R        +     + G   L  
Sbjct: 206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-------NAGVCAVNG--LLYV 256

Query: 276 FGGYNG-KYNNEVFV 289
            GG +G      V  
Sbjct: 257 VGGDDGSCNLASVEY 271

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 36/178 (20%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 48  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSM--IVRFIDLETN---LCGVMETSG 98
             + PM    S   +   G  L  +GG+   S   +  +  + +  TN       M    
Sbjct: 137 FHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECY-NATTNEWTYIAEM---- 191

Query: 99  KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYD 157
                R G  V ++ + L   GG D    +   V   D  T  W  V          R +
Sbjct: 192 --STRRSGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTTNAWRQV----ADMNMCRRN 244

Query: 158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID 215
                     L V GG   S     +   +  T++W+   +   + TGR+      ID
Sbjct: 245 AGVCAVNGL-LYVVGGDDGSCNLASVEYYNPTTDKWT--VVSSCMSTGRSYAGVTVID 299

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 39/292 (13%), Positives = 78/292 (26%), Gaps = 63/292 (21%)

Query: 9   NYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM----SDHCMVKWGTK 64
               +    + FD     W  +                    PP+        + +    
Sbjct: 61  KEDPMSAYFLQFDHLDSEWLGM--------------------PPLPSPRCLFGLGEALNS 100

Query: 65  LLILGGHYKKSSDSMI--VRFIDLETN---LCGVMETSGKVPVARGGHSVTLVGSRLIIF 119
           + ++GG   K  +  +  V   D  +        +      P    GH+V      + + 
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL------PYVVYGHTVLSHMDLVYVI 154

Query: 120 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHSI 178
           GG+   RK LN +   D +   W  +     P    R    A +H +  +IV  G + + 
Sbjct: 155 GGKGSDRKCLNKMCVYDPKKFEWKEL----APMQTARSLFGATVH-DGRIIVAAGVTDTG 209

Query: 179 FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI---- 234
             +   V  +  N+W+           R+  + +++    Y +GG          +    
Sbjct: 210 LTSSAEVYSITDNKWAP---FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTE 266

Query: 235 -----VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281
                  N  +  W  +          +               L        
Sbjct: 267 LNDIWRYNEEEKKWEGVL------REIAYAAGATFL----PVRLNVLRLTKM 308

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 32/210 (15%)

Query: 85  DLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED-----RSRKLLNDVHFLDLET 139
           D   N C     S    V +   S+    +++ + GG       +   +       D   
Sbjct: 19  DPAANECYCASLS--SQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76

Query: 140 MTWDAVEVTQTPP--APRYDHSAALHANRYLIVFGGCSHS---IFFNDLHVLDLQTNEWS 194
             W        PP  +PR         N  + V GG          + +   D  + +W 
Sbjct: 77  SEW-----LGMPPLPSPRCLFGLGEALNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWG 130

Query: 195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI-VLNMTKLAWSILTSVK-GR 252
           +      L     GH  ++  +  Y++GG  ++  C   + V +  K  W  L  ++  R
Sbjct: 131 E---SDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR 187

Query: 253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGK 282
           +          + + +G   ++   G    
Sbjct: 188 S-------LFGATVHDG--RIIVAAGVTDT 208

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 45/241 (18%)

Query: 13  LEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLIL 68
           L+      D  S  W  L                    PP+        + +   K+ ++
Sbjct: 76  LQSYFFQLDNVSSEWVGL--------------------PPLPSARCLFGLGEVDDKIYVV 115

Query: 69  GGHYKKSSDSM-IV-RFIDLETN---LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 123
            G   ++  S+  V  + D           +      P+   GH+V      +   GG+ 
Sbjct: 116 AGKDLQTEASLDSVLCY-DPVAAKWSEVKNL------PIKVYGHNVISHNGMIYCLGGKT 168

Query: 124 RSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHSIFFND 182
             +K  N V   + +   W  +     P   PR     A+H    +++ GG +       
Sbjct: 169 DDKKCTNRVFIYNPKKGDWKDL----APMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSAS 223

Query: 183 LHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA 242
           +   DL+TN+W       +    R+  + +++  + Y +GG        +          
Sbjct: 224 VEAFDLKTNKWEV---MTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDI 280

Query: 243 W 243
           W
Sbjct: 281 W 281

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 39/230 (16%)

Query: 64  KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 123
            +L++         +  V + D   N C +   +    + R   S+    +++ + GG  
Sbjct: 17  LILLVND-------TAAVAY-DPMENECYLTALA--EQIPRNHSSIVTQQNQVYVVGGLY 66

Query: 124 -----RSRKLLNDVHFLDLETMTWDAVEVTQTPP--APRYDHSAALHANRYLIVFGGC-- 174
                + + L +    LD  +  W        PP  + R         ++ + V  G   
Sbjct: 67  VDEENKDQPLQSYFFQLDNVSSEW-----VGLPPLPSARCLFGLGEVDDK-IYVVAGKDL 120

Query: 175 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 234
                 + +   D    +WS+     +L     GH  I+ +   Y +GG  ++  C   +
Sbjct: 121 QTEASLDSVLCYDPVAAKWSE---VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV 177

Query: 235 -VLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 282
            + N  K  W  L  +K  R+           AI +G   +V  GG    
Sbjct: 178 FIYNPKKGDWKDLAPMKTPRS-------MFGVAIHKG--KIVIAGGVTED 218

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 38/180 (21%)

Query: 50  LPPM----SDHCMVKWGTKLLILGGHY--KKSSDSMIVRFIDLETN---LCGVMETSGKV 100
           +  +      H ++     +  LGG    KK ++ +   + + +         M      
Sbjct: 142 VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF-IY-NPKKGDWKDLAPM------ 193

Query: 101 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHS 159
              R    V +   +++I GG      L   V   DL+T  W+ +    T  P  R   S
Sbjct: 194 KTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVM----TEFPQERSSIS 248

Query: 160 AALHANRYLIVFGGCSH---------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 210
               A   L   GG +              ND+   +    EW+       L   R    
Sbjct: 249 LVSLAGS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIRYASG 302

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 28/132 (21%)

Query: 168 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 227
           +++    +   +       D   NE             R   + +T     Y+VGG   +
Sbjct: 18  ILLVNDTAAVAY-------DPMENECYLT--ALAEQIPRNHSSIVTQQNQVYVVGGLYVD 68

Query: 228 NGCQETIV------LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281
              ++  +      L+     W  L       PL S         ++    +    G + 
Sbjct: 69  EENKDQPLQSYFFQLDNVSSEWVGLP------PLPSARCLFGLGEVDD--KIYVVAGKDL 120

Query: 282 KYNN-----EVF 288
           +          +
Sbjct: 121 QTEASLDSVLCY 132

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 47.6 bits (112), Expect = 6e-06
 Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 14/142 (9%)

Query: 101 PVARGGHS-VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159
            VARG  S  T+   R+   GG         +       + TW ++   +  P    D  
Sbjct: 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 343

Query: 160 AALHANRYLIVFGGCSHSIFF---NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT--- 213
               ++ +  +FG    S+F    +        +         G   + R          
Sbjct: 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA-GKRQSNRGVAPDAMCGN 402

Query: 214 ------IDENWYIVGGGDNNNG 229
                 +       GG  +   
Sbjct: 403 AVMYDAVKGKILTFGGSPDYQD 424

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 92  GVMETSGKVPVARGGHSVTLVGS---------RLIIFGG--EDRSRKLLNDVHFLDLETM 140
           G ++++GK    RG     + G+         +++ FGG  + +      + H + L   
Sbjct: 380 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 439

Query: 141 TWDAVEVTQTP--PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVL------DLQTNE 192
                 V  +      R  H++ +  +    + GG    I F D   +        + + 
Sbjct: 440 GTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499

Query: 193 WSQPEIKGDLVTGRAGHAGITIDEN-WYIVGGGDNNNGCQET 233
           + +   +      R  H+   +  +     GGG     C   
Sbjct: 500 FYK---QNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN 538

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 357 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416
           ++    +  S++++ + N   +E+   + ++ S+  K+   +Q  L AER         I
Sbjct: 33  RKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI 92

Query: 417 AELQKMLESSQTIENEVQILRQQKSAFEQEMERA 450
            +LQ  +    +++ EV+ L+      E E + A
Sbjct: 93  GDLQARI---TSLQEEVKHLKHNLEKVEGERKEA 123

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 16/90 (17%), Positives = 33/90 (36%)

Query: 363 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422
           L+  L E         +    +  +H+E+SK +S ++      + R   LE   ++  K 
Sbjct: 11  LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKD 70

Query: 423 LESSQTIENEVQILRQQKSAFEQEMERATS 452
               Q I    +  R   S    +++   +
Sbjct: 71  YYQLQAILEAERRDRGHDSEMIGDLQARIT 100

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 17/105 (16%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 406
           ++++     ++  K   +    +++      R      +    +L   ++S+Q ++   +
Sbjct: 51  RELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110

Query: 407 SRCFKLEAQIAELQKMLESSQTIENEVQI-LRQQKSAFEQEMERA 450
               K+E +  E Q ML  S+  +N ++I L  +  + +Q +E+ 
Sbjct: 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 322  AKSEKLDIPKTLSSKFAGIGNDLSEK--DVRTDIDAIKEDKRVLELSLTEVRTENSRFRE 379
             + EK      L +K   + ++L  +          +++ KR LE   +++  + +  + 
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081

Query: 380  KIDEVNSTHSELSKELSSVQGQLVAERSRCFK-------LEAQIAELQKMLESSQT---- 428
            +I E+ +  ++  +EL +   +L  E S+          LE+ I++LQ+ LES +     
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 429  IENEVQILRQQKSAFEQEMERATS 452
             E + + L ++  A + E+E    
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 357  KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC------- 409
            + +K   +  + ++  +     ++ +++      L + +S +   L  E  +        
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 410  FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 452
             K E+ I+EL+  L+     E   Q L + K   E E      
Sbjct: 1035 NKHESMISELEVRLKKE---EKSRQELEKIKRKLEGESSDLHE 1074

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 347  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ----- 401
             D+   I  ++     L+  L +   E      ++++  S  +   K++  ++       
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 402  --LVAERSRCFKLEAQ-------IAELQKMLESSQTIENEVQILRQQKSAFEQE 446
              L +E++   K E Q       +  L+  LE +       Q LR      + +
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 406
           +D     + +     ++E  L            K  E+      ++  L S++ Q     
Sbjct: 156 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYS 215

Query: 407 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEMERA 450
            +  K E +I  L   L+ ++T     E  V  L +     E E+   
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 412
           +DAIK+  ++L+L                        +L  EL S+Q +L A      K 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 413 EAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERA 450
              + + Q+ LE ++      E +V  L ++   FE+E++RA
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 347  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 406
            K     ++  K+    LE  + +        + KIDE N  +  L +++++++     E 
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQ-------LQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 407  SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 452
                KL + +  L+   E ++   N V  L+++ +   +E+ +  +
Sbjct: 963  E---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	469
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.37
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.36
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.96
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.82
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.79
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.76
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.67
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.62
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.57
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.52
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.49
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.49
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.49
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.46
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.45
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.44
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.4
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.39
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.37
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.31
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.31
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.29
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.28
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.21
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.17
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.15
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.14
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.1
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.09
3jro_A	753	Fusion protein of protein transport protein SEC13	97.07
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.93
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.85
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.83
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.82
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.79
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.75
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.73
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.72
3jro_A	753	Fusion protein of protein transport protein SEC13	96.72
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.72
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.69
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.68
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.63
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.59
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.57
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.56
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.54
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.53
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.48
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.45
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.39
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.37
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.36
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.34
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.32
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.31
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.31
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.3
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.29
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.29
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.27
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.23
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.21
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.16
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.14
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.11
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.11
2pm7_B	297	Protein transport protein SEC13, protein transport	96.1
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.1
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.09
3ott_A	758	Two-component system sensor histidine kinase; beta	96.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.07
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.01
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.01
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.01
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.01
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.99
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.99
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.96
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	95.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.93
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.9
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.88
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.84
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.79
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.78
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.73
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.7
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.69
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.69
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.64
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.61
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.58
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.55
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.54
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.54
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.51
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.51
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.47
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.47
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	95.41
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.41
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.35
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.35
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.35
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.32
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.31
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.28
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.28
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.17
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.17
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.15
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.11
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.11
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.1
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.08
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.07
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.05
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	94.99
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	94.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	94.96
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	94.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	94.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	94.92
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.92
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.88
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.85
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.76
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	94.75
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	94.71
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	94.69
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	94.59
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	94.53
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.5
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.45
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.39
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	94.39
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	94.28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.24
2pm7_B	297	Protein transport protein SEC13, protein transport	94.2
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.14
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	94.09
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.97
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	93.91
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	93.89
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	93.87
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.82
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	93.73
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.69
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	93.68
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	93.57
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.52
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	93.5
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.47
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	93.47
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	93.42
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	93.37
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.34
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	93.33
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	93.27
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	93.26
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.23
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	93.23
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	93.2
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.19
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	93.14
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.13
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.1
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	93.04
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	92.9
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	92.88
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.85
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	92.84
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	92.79
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	92.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	92.72
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.66
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.47
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	92.47
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	92.42
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	92.36
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	92.33
3ott_A	758	Two-component system sensor histidine kinase; beta	92.31
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.31
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	92.15
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	92.07
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	92.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.98
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.96
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	91.95
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	91.79
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	91.74
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	91.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	91.49
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	91.48
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	91.39
4fi5_A	113	Nucleoprotein; structural genomics, niaid, nationa	91.39
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	91.3
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	91.22
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	91.21
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	91.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	91.1
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	90.97
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	90.95
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	90.88
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	90.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	90.77
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	90.76
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.51
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	90.5
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	90.45
2ic6_A	78	Nucleocapsid protein; hantavirus, bunyaviridae, ss	90.28
3bas_A	89	Myosin heavy chain, striated muscle/general contro	90.2
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	89.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	89.65
2ic9_A	96	Nucleocapsid protein; hantavirus, bunyaviridae, ss	89.47
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	89.36
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	89.19
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	89.15
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	89.09
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	88.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	88.82
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.68
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	88.2
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	88.16
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	87.91
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	87.88
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	87.87
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	87.72
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	87.64
3lay_A	175	Zinc resistance-associated protein; salmonella typ	87.58
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	87.43
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	87.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	87.08
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	87.04
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	86.87
3ibp_A	302	Chromosome partition protein MUKB; structural main	86.84
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	86.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	86.68
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	86.53
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	86.52
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	86.4
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	86.39
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	86.08
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	86.08
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	86.01
3vp9_A	92	General transcriptional corepressor TUP1; four hel	85.66
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	85.61
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	85.45
3m48_A	33	General control protein GCN4; leucine zipper, synt	85.42
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.19
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	84.97
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	84.92
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	84.89
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	84.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	84.58
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.49
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	84.33
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	84.27
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	84.13
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	84.03
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	83.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	83.8
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	83.69
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	83.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	83.17
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	83.01
3ibp_A	302	Chromosome partition protein MUKB; structural main	82.96
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	82.86
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	82.83
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	82.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	82.78
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	82.71
2ece_A	462	462AA long hypothetical selenium-binding protein;	82.59
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	82.59
1lwu_C	323	Fibrinogen gamma chain; heterotrimer, protein-pept	82.58
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	82.28
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	82.24
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	82.12
2bni_A	34	General control protein GCN4; four helix bundle, a	81.96
1uo4_A	34	General control protein GCN4; four helix bundle, c	81.88
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	81.79
2ece_A	462	462AA long hypothetical selenium-binding protein;	81.75
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	81.72
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	81.7
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	81.57
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	81.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	81.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	81.23
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	81.18
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	81.07
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	81.03
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	80.76
1uix_A	71	RHO-associated kinase; coiled-coil, transferase; H	80.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	80.65
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	80.4
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	80.4
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	80.34
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	80.28
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	80.22
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	80.15
1k32_A	1045	Tricorn protease; protein degradation, substrate g	80.02

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.6e-46  Score=359.53  Aligned_cols=277  Identities=18%  Similarity=0.241  Sum_probs=246.0

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEcccc---CCCCC
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY---KKSSD   77 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~---~~~~~   77 (469)
                      ||+|||. .+..++ ++++||+.+++|..++++                |.+|.+|++++++++||++||..   .....
T Consensus        27 i~v~GG~-~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~   88 (308)
T 1zgk_A           27 IYTAGGY-FRQSLS-YLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTD   88 (308)
T ss_dssp             EEEECCB-SSSBCC-CEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCEEEETTEEEE
T ss_pred             EEEEeCc-CCCCcc-eEEEEcCCCCeEeECCCC----------------CcccccceEEEECCEEEEECCCcCCCCCCee
Confidence            6999998 567778 999999999999999776                78999999999999999999984   22335


Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      .+++++||+.+++|+.++   ++|.+|.+|++++++++||++||..... ..+++++||+.+++|+.++   ++|.+|.+
T Consensus        89 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~  161 (308)
T 1zgk_A           89 SSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIG  161 (308)
T ss_dssp             CCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBS
T ss_pred             cceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECC---CCCccccc
Confidence            678999999999999998   7899999999999999999999987643 5889999999999999986   77899999


Q ss_pred             ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184          158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      |+++++ +++||+|||.+....++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....+++++||
T Consensus       162 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd  237 (308)
T 1zgk_A          162 VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD  237 (308)
T ss_dssp             CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC---CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEe
Confidence            999998 778999999987777899999999999999975   7899999999999999999999988777789999999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCCCchhhcchh
Q 012184          238 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS  314 (469)
Q Consensus       238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~  314 (469)
                      +.+++|+.++.+    |.+|.+|+++..    ++.|||+||.++. ..+++++||+.+++|..+..+|.++..+.+++
T Consensus       238 ~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~  307 (308)
T 1zgk_A          238 VETETWTFVAPM----KHRRSALGITVH----QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV  307 (308)
T ss_dssp             TTTTEEEECCCC----SSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred             CCCCcEEECCCC----CCCccceEEEEE----CCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccceeEe
Confidence            999999998754    566788887776    7899999998764 57899999999999999999999888776553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=357.07  Aligned_cols=274  Identities=14%  Similarity=0.253  Sum_probs=244.4

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI   80 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~   80 (469)
                      ||++||...   ++ ++++||+.+++|..++++                |.+|.+|++++++++||++||..  ....++
T Consensus        14 l~~~GG~~~---~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~   71 (306)
T 3ii7_A           14 RIALFGGSQ---PQ-SCRYFNPKDYSWTDIRCP----------------FEKRRDAACVFWDNVVYILGGSQ--LFPIKR   71 (306)
T ss_dssp             EEEEECCSS---TT-SEEEEETTTTEEEECCCC----------------SCCCBSCEEEEETTEEEEECCBS--SSBCCE
T ss_pred             EEEEeCCCC---Cc-eEEEecCCCCCEecCCCC----------------CcccceeEEEEECCEEEEEeCCC--CCCcce
Confidence            689999755   66 999999999999999876                78999999999999999999987  446788


Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  160 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~  160 (469)
                      +++||+.+++|..++   ++|.+|.+|++++++++||++||.+.....++++++||+.+++|+.+.   ++|.+|..|++
T Consensus        72 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~  145 (306)
T 3ii7_A           72 MDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGM  145 (306)
T ss_dssp             EEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEE
T ss_pred             EEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEE
Confidence            999999999999998   789999999999999999999999755557899999999999999985   78899999999


Q ss_pred             EEEcCcEEEEEecCCCCcc----cCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          161 ALHANRYLIVFGGCSHSIF----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~~~----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      +.+ +++||+|||......    ++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....+++++|
T Consensus       146 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y  221 (306)
T 3ii7_A          146 VEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY  221 (306)
T ss_dssp             EEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEE
T ss_pred             EEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECCEEEEEeCCCCCCCCceEEEe
Confidence            998 678999999866544    899999999999999985   789999999999999999999998777678899999


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCCCchhhcchh
Q 012184          237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS  314 (469)
Q Consensus       237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~  314 (469)
                      |+.+++|+.++.+    |.+|.+|+++.+    ++.|||+||.++. ..+++++||+.+++|..+..+|.++..+.++.
T Consensus       222 d~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~  292 (306)
T 3ii7_A          222 DIKLNEWKMVSPM----PWKGVTVKCAAV----GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC  292 (306)
T ss_dssp             ETTTTEEEECCCC----SCCBSCCEEEEE----TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEE
T ss_pred             eCCCCcEEECCCC----CCCccceeEEEE----CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEE
Confidence            9999999998755    456788887777    7899999998755 67899999999999999999988887776554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.3e-45  Score=350.20  Aligned_cols=277  Identities=18%  Similarity=0.252  Sum_probs=246.3

Q ss_pred             CEEEcc-cCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184            1 MLLRCS-IRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG-~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~   79 (469)
                      ||++|| ...+..++ +++.||+.+++|..++++                |.+|.+|++++++++||++||.... ...+
T Consensus        17 i~~~GG~~~~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~   78 (301)
T 2vpj_A           17 LLVVGGFGSQQSPID-VVEKYDPKTQEWSFLPSI----------------TRKRRYVASVSLHDRIYVIGGYDGR-SRLS   78 (301)
T ss_dssp             EEEECCEETTTEECC-CEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCBCSS-CBCC
T ss_pred             EEEEeCccCCCccee-EEEEEcCCCCeEEeCCCC----------------ChhhccccEEEECCEEEEEcCCCCC-ccCc
Confidence            699999 66667788 999999999999999876                7789999999999999999998743 3678


Q ss_pred             eEEEEECCCCe---EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           80 IVRFIDLETNL---CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        80 ~~~~~d~~t~~---W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      ++++||+.+++   |+.++   ++|.+|.+|++++++++||++||..... ..+++++||+.+++|+.++   ++|.+|.
T Consensus        79 ~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~  151 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLG---DMQTARE  151 (301)
T ss_dssp             CEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEE---ECSSCCB
T ss_pred             eEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECC---CCCCCcc
Confidence            89999999999   99997   8899999999999999999999998654 5889999999999999987   6789999


Q ss_pred             CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      +|+++++ +++||++||.+....++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....+++++|
T Consensus       152 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~y  227 (301)
T 2vpj_A          152 GAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAY  227 (301)
T ss_dssp             SCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC---CCCcccccceEEEECCEEEEEeCCCCCcccceEEEE
Confidence            9999998 678999999887778899999999999999985   789999999999999999999998877668899999


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCCCchhhcchh
Q 012184          237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS  314 (469)
Q Consensus       237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~  314 (469)
                      |+.+++|+.++.+    |.+|.+|+++..    ++.||++||.++. ..+++++||+.+++|..+..+|.++..+.++.
T Consensus       228 d~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~  298 (301)
T 2vpj_A          228 NIRTDSWTTVTSM----TTPRCYVGATVL----RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCV  298 (301)
T ss_dssp             ETTTTEEEEECCC----SSCCBSCEEEEE----TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEE
T ss_pred             eCCCCcEEECCCC----CCcccceeEEEE----CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEE
Confidence            9999999998755    566788887776    7899999998764 45889999999999999999988887776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.3e-45  Score=348.55  Aligned_cols=277  Identities=17%  Similarity=0.229  Sum_probs=242.7

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI   80 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~   80 (469)
                      ||++||... ..++ ++++||+.+++|..++++                |.+|.+|++++++++||++||..... ..++
T Consensus        18 i~v~GG~~~-~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~   78 (302)
T 2xn4_A           18 MVVVGGQAP-KAIR-SVECYDFKEERWHQVAEL----------------PSRRCRAGMVYMAGLVFAVGGFNGSL-RVRT   78 (302)
T ss_dssp             EEEECCBSS-SBCC-CEEEEETTTTEEEEECCC----------------SSCCBSCEEEEETTEEEEESCBCSSS-BCCC
T ss_pred             EEEECCCCC-CCCC-cEEEEcCcCCcEeEcccC----------------CcccccceEEEECCEEEEEeCcCCCc-cccc
Confidence            689999764 4567 999999999999999876                77899999999999999999987543 5678


Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  160 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~  160 (469)
                      +++||+.+++|+.++   ++|.+|.+|++++++++||++||.+... .++++++||+.+++|+.+.   ++|.+|.+|++
T Consensus        79 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~  151 (302)
T 2xn4_A           79 VDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTRRSSVGV  151 (302)
T ss_dssp             EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSCCBSCEE
T ss_pred             eEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCcccCceE
Confidence            999999999999998   7899999999999999999999987644 5789999999999999986   77899999999


Q ss_pred             EEEcCcEEEEEecCCCC--cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184          161 ALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  238 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~  238 (469)
                      +.+ +++||+|||.+..  ..++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....+++++||+
T Consensus       152 ~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~  227 (302)
T 2xn4_A          152 GVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP  227 (302)
T ss_dssp             EEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEET
T ss_pred             EEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECCEEEEECCCCCCcccceEEEEeC
Confidence            998 6789999998654  35799999999999999985   78999999999999999999999887766889999999


Q ss_pred             CCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCcc-ccCCCchhhcchhh
Q 012184          239 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPK-IFQSPAAAAAAASV  315 (469)
Q Consensus       239 ~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~-~~~~~~~~~~~~~~  315 (469)
                      .+++|+.++.+    |.+|.+|+++..    ++.|||+||.++. ..+++++||+.++.|..++ .+|.++..+.++++
T Consensus       228 ~~~~W~~~~~~----~~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~  298 (302)
T 2xn4_A          228 TTNAWRQVADM----NMCRRNAGVCAV----NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI  298 (302)
T ss_dssp             TTTEEEEECCC----SSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEE
T ss_pred             CCCCEeeCCCC----CCccccCeEEEE----CCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEe
Confidence            99999998765    456778887766    7899999998754 5788999999999999886 78888877765543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=6e-45  Score=349.68  Aligned_cols=280  Identities=19%  Similarity=0.244  Sum_probs=235.8

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEcccc-----CCC
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY-----KKS   75 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~-----~~~   75 (469)
                      ||++||       + +++.|||.+++|.. ++++              .|.+|.+|++++++++||++||..     ...
T Consensus         7 l~~~GG-------~-~~~~yd~~~~~W~~-~~~~--------------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~   63 (315)
T 4asc_A            7 IFMISE-------E-GAVAYDPAANECYC-ASLS--------------SQVPKNHVSLVTKENQVFVAGGLFYNEDNKED   63 (315)
T ss_dssp             EEEEET-------T-EEEEEETTTTEEEE-EECC--------------CCSCSSEEEEECTTCCEEEEEEEEECSSCSSS
T ss_pred             EEEEcC-------C-ceEEECCCCCeEec-CCCC--------------CCCCccceEEEEECCEEEEEcCcccCCCCCcc
Confidence            588999       4 89999999999986 4431              266899999999999999999973     122


Q ss_pred             CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC--CCCccCcEEEEECCCCeEEEeeeCCCCCC
Q 012184           76 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR--SRKLLNDVHFLDLETMTWDAVEVTQTPPA  153 (469)
Q Consensus        76 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~--~~~~~~~v~~~d~~t~~W~~~~~~g~~p~  153 (469)
                      ...+++++||+.+++|+.++   ++|.+|.+|++++++++||++||.+.  .....+++++||+.+++|+.+.   ++|.
T Consensus        64 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~  137 (315)
T 4asc_A           64 PMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPY  137 (315)
T ss_dssp             CEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSS
T ss_pred             ccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCC
Confidence            24567999999999999997   78999999999999999999999753  3457899999999999999986   7889


Q ss_pred             CCCCceEEEEcCcEEEEEecC-CCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcce
Q 012184          154 PRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  232 (469)
Q Consensus       154 ~r~~~~~~~~~~~~l~v~GG~-~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d  232 (469)
                      +|.+|+++.+ +++||+|||. .....++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....++
T Consensus       138 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  213 (315)
T 4asc_A          138 VVYGHTVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTGLTSS  213 (315)
T ss_dssp             CCBSCEEEEE-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSSEEEE
T ss_pred             cccceeEEEE-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCCccce
Confidence            9999999998 6679999998 55577899999999999999975   78999999999999999999999887777889


Q ss_pred             EEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCccc
Q 012184          233 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKI  302 (469)
Q Consensus       233 ~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~~  302 (469)
                      +++||+.+++|+.++++    |.+|.+|+++..    +++|||+||.++          ...+++++||+.++.|..+  
T Consensus       214 ~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--  283 (315)
T 4asc_A          214 AEVYSITDNKWAPFEAF----PQERSSLSLVSL----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--  283 (315)
T ss_dssp             EEEEETTTTEEEEECCC----SSCCBSCEEEEE----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--
T ss_pred             EEEEECCCCeEEECCCC----CCcccceeEEEE----CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--
Confidence            99999999999999754    567888887776    789999999853          2468899999999999987  


Q ss_pred             cCCCchhhcch-hhhHHHhhcc
Q 012184          303 FQSPAAAAAAA-SVTAAYALAK  323 (469)
Q Consensus       303 ~~~~~~~~~~~-~~~~~~~~gg  323 (469)
                      ++.++..+.++ ....+|++..
T Consensus       284 ~~~~r~~~~~~~~~~~l~v~~~  305 (315)
T 4asc_A          284 LREIAYAAGATFLPVRLNVLRL  305 (315)
T ss_dssp             ESCSSCCSSCEEEEEEECGGGS
T ss_pred             ccCCcCccceEEeCCEEEEEEe
Confidence            55555555433 3445666643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-43  Score=340.65  Aligned_cols=279  Identities=17%  Similarity=0.258  Sum_probs=234.5

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC-----C
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK-----S   75 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~-----~   75 (469)
                      ||++||.        +++.|||.+++|...+..               .|.+|.+|++++++++||++||....     .
T Consensus        18 i~~~GG~--------~~~~yd~~~~~W~~~~~~---------------~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~   74 (318)
T 2woz_A           18 ILLVNDT--------AAVAYDPMENECYLTALA---------------EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQ   74 (318)
T ss_dssp             EEEECSS--------EEEEEETTTTEEEEEEEC---------------TTSCSSEEEEECSSSCEEEEESSCC-------
T ss_pred             hhhcccc--------ceEEECCCCCceecccCC---------------ccCCccceEEEEECCEEEEECCcccCccccCC
Confidence            5899993        689999999999984332               15789999999999999999996321     1


Q ss_pred             CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC-CCCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184           76 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETMTWDAVEVTQTPPAP  154 (469)
Q Consensus        76 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~-~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~  154 (469)
                      ...+++++||+.+++|..++   ++|.+|.+|++++++++||++||... ....++++++||+.+++|+.+.   ++|.+
T Consensus        75 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~  148 (318)
T 2woz_A           75 PLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIK  148 (318)
T ss_dssp             CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSC
T ss_pred             CccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCc
Confidence            24456999999999999997   78999999999999999999999873 3446899999999999999986   78899


Q ss_pred             CCCceEEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceE
Q 012184          155 RYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQET  233 (469)
Q Consensus       155 r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~  233 (469)
                      |.+|+++++ +++||+|||.. ....++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....+++
T Consensus       149 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  224 (318)
T 2woz_A          149 VYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASV  224 (318)
T ss_dssp             EESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             ccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCEEEEEcCcCCCCccceE
Confidence            999999997 77899999974 3456899999999999999985   789999999999999999999998776667899


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCcccc
Q 012184          234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKIF  303 (469)
Q Consensus       234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~~~  303 (469)
                      ++||+.+++|+.++.+    |.+|.+|+++..    ++.|||+||.+.          ...+++|+||+.+++|..+  +
T Consensus       225 ~~yd~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~  294 (318)
T 2woz_A          225 EAFDLKTNKWEVMTEF----PQERSSISLVSL----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--L  294 (318)
T ss_dssp             EEEETTTCCEEECCCC----SSCCBSCEEEEE----TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--E
T ss_pred             EEEECCCCeEEECCCC----CCcccceEEEEE----CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--c
Confidence            9999999999998765    456788887776    789999999864          2468999999999999987  6


Q ss_pred             CCCchhhcchh-hhHHHhhc
Q 012184          304 QSPAAAAAAAS-VTAAYALA  322 (469)
Q Consensus       304 ~~~~~~~~~~~-~~~~~~~g  322 (469)
                      |.++..+.++. ...+|++.
T Consensus       295 ~~~r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          295 KEIRYASGASCLATRLNLFK  314 (318)
T ss_dssp             SCCGGGTTCEEEEEEEEGGG
T ss_pred             ccccccccceeeCCEEEEEE
Confidence            77777665444 33455553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=3.6e-40  Score=322.04  Aligned_cols=268  Identities=13%  Similarity=0.135  Sum_probs=210.9

Q ss_pred             CEEEcccCCCcccCCceEEEEcc--CCceeeeeecccccCCccccCCCCCCC-CCCcCeeeEEECCEEEEEccc-c---C
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLR--SLAWSNLRLETELDADKTEDSGLLEVL-PPMSDHCMVKWGTKLLILGGH-Y---K   73 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~p-~~r~~~~~~~~~~~iy~~GG~-~---~   73 (469)
                      |||+||...    + ++++||+.  +++|+.++++                | .+|.+|++++++++||++||. .   .
T Consensus        22 iyv~GG~~~----~-~~~~~d~~~~~~~W~~~~~~----------------p~~~R~~~~~~~~~~~lyv~GG~~~~~~~   80 (357)
T 2uvk_A           22 VYIGLGSAG----T-AWYKLDTQAKDKKWTALAAF----------------PGGPRDQATSAFIDGNLYVFGGIGKNSEG   80 (357)
T ss_dssp             EEEECGGGT----T-CEEEEETTSSSCCEEECCCC----------------TTCCCBSCEEEEETTEEEEECCEEECTTS
T ss_pred             EEEEeCcCC----C-eEEEEccccCCCCeeECCCC----------------CCCcCccceEEEECCEEEEEcCCCCCCCc
Confidence            699999653    4 89999998  5999999887                6 799999999999999999998 3   1


Q ss_pred             CCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC---------------------------
Q 012184           74 KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR---------------------------  126 (469)
Q Consensus        74 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~---------------------------  126 (469)
                      .....+++++||+.+++|+.+++..  |.+|.+|++++++++||+|||.+...                           
T Consensus        81 ~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (357)
T 2uvk_A           81 LTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD  158 (357)
T ss_dssp             CEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             cceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence            2235688999999999999998431  59999999999999999999986431                           


Q ss_pred             ------CccCcEEEEECCCCeEEEeeeCCCCCCCCC-CceEEEEcCcEEEEEecCCCC-cccCcEEEEEC--CCCceEee
Q 012184          127 ------KLLNDVHFLDLETMTWDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHS-IFFNDLHVLDL--QTNEWSQP  196 (469)
Q Consensus       127 ------~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~-~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~~d~--~~~~W~~~  196 (469)
                            .+++++++||+.+++|+.+.   ++|.+|. +|+++++ +++||||||.... ..++++++||+  .+++|+.+
T Consensus       159 ~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~  234 (357)
T 2uvk_A          159 KKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL  234 (357)
T ss_dssp             SCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEEC
T ss_pred             ccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEec
Confidence                  24689999999999999996   5666554 4888887 6789999997543 45789999987  89999998


Q ss_pred             eecCCCCCCCcceEEEEECCEEEEEecCCCC-----------------CCcceEEEEECCCCcEEEeccCCCCCCCCCCC
Q 012184          197 EIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----------------NGCQETIVLNMTKLAWSILTSVKGRNPLASEG  259 (469)
Q Consensus       197 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----------------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~  259 (469)
                      ... +.|.+|..|+++.++++|||+||.+..                 ..++++++||+.+++|+.++.+    |.+|.+
T Consensus       235 ~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~  309 (357)
T 2uvk_A          235 APV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL----SQGRAY  309 (357)
T ss_dssp             CCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC----SSCCBS
T ss_pred             CCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC----CCCccc
Confidence            632 334456788899999999999996432                 2346899999999999998765    466788


Q ss_pred             cceEEEEEcCCcEEEEEeccCCC--CCceEEEEECCCCCCCCccccC
Q 012184          260 LSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRDIPRPKIFQ  304 (469)
Q Consensus       260 ~s~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~d~~~~~w~~~~~~~  304 (469)
                      |+++..    +++||||||.+..  ..+++++|++++++|....+.|
T Consensus       310 ~~~~~~----~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          310 GVSLPW----NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             SEEEEE----TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             ceeEEe----CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            887666    7899999998653  4689999999999998766554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=310.41  Aligned_cols=234  Identities=19%  Similarity=0.235  Sum_probs=208.6

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI   80 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~   80 (469)
                      |||+||......++ ++++||+.+++|+.++++                |.+|.+|++++++++||++||..... ..++
T Consensus        64 lyv~GG~~~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~  125 (302)
T 2xn4_A           64 VFAVGGFNGSLRVR-TVDSYDPVKDQWTSVANM----------------RDRRSTLGAAVLNGLLYAVGGFDGST-GLSS  125 (302)
T ss_dssp             EEEESCBCSSSBCC-CEEEEETTTTEEEEECCC----------------SSCCBSCEEEEETTEEEEEEEECSSC-EEEE
T ss_pred             EEEEeCcCCCcccc-ceEEECCCCCceeeCCCC----------------CccccceEEEEECCEEEEEcCCCCCc-cCce
Confidence            69999988777788 999999999999999887                78999999999999999999987543 5688


Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC-CccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR-KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  159 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~-~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~  159 (469)
                      +++||+.+++|+.++   ++|.+|.+|++++++++||++||.+... ...+++++||+.+++|+.+.   ++|.+|.+|+
T Consensus       126 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~  199 (302)
T 2xn4_A          126 VEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAG  199 (302)
T ss_dssp             EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCE
T ss_pred             EEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCcccccccc
Confidence            999999999999998   7899999999999999999999987653 35889999999999999996   7889999999


Q ss_pred             EEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184          160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      ++++ +++||+|||.+.....+++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....+++++||+.
T Consensus       200 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          200 VGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA---DMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             EEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC---CCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence            9988 678999999887777899999999999999985   788999999999999999999998777678899999999


Q ss_pred             CCcEEEeccCCCCCCCCCCCcceEEE
Q 012184          240 KLAWSILTSVKGRNPLASEGLSVCSA  265 (469)
Q Consensus       240 ~~~W~~~~~~~~~~p~~r~~~s~~~~  265 (469)
                      +++|+.++.   ..|.+|.+|+++++
T Consensus       276 ~~~W~~~~~---~~~~~r~~~~~~~~  298 (302)
T 2xn4_A          276 TDKWTVVSS---CMSTGRSYAGVTVI  298 (302)
T ss_dssp             TTEEEECSS---CCSSCCBSCEEEEE
T ss_pred             CCeEEECCc---ccCcccccceEEEe
Confidence            999999862   22567888887765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.9e-40  Score=317.26  Aligned_cols=257  Identities=18%  Similarity=0.252  Sum_probs=217.1

Q ss_pred             CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccC---CCC
Q 012184           50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED---RSR  126 (469)
Q Consensus        50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~---~~~  126 (469)
                      |++|..|+++.+++.||++||.  .....+++++||+.+++|..++   ++|.+|.+|++++++++||+|||..   ...
T Consensus        12 ~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~   86 (308)
T 1zgk_A           12 GLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN   86 (308)
T ss_dssp             ---------CCCCCCEEEECCB--SSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEE
T ss_pred             CeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCC
Confidence            7899999999999999999998  2346778999999999999997   7899999999999999999999984   333


Q ss_pred             CccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCC
Q 012184          127 KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR  206 (469)
Q Consensus       127 ~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r  206 (469)
                      ...+++++||+.+++|+.++   ++|.+|..|+++++ +++||+|||......++++++||+.+++|+.+.   ++|.+|
T Consensus        87 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r  159 (308)
T 1zgk_A           87 TDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA---PMLTRR  159 (308)
T ss_dssp             EECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECC---CCSSCC
T ss_pred             eecceEEEECCCCCeEeECC---CCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECC---CCCccc
Confidence            46889999999999999986   78899999999998 678999999887777899999999999999975   789999


Q ss_pred             cceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCc
Q 012184          207 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNN  285 (469)
Q Consensus       207 ~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~  285 (469)
                      ..|+++.++++|||+||.+.....+++++||+.+++|+.++.+    |.+|.+|+++..    ++.|||+||.++. ..+
T Consensus       160 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~  231 (308)
T 1zgk_A          160 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM----NTIRSGAGVCVL----HNCIYAAGGYDGQDQLN  231 (308)
T ss_dssp             BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC----SSCCBSCEEEEE----TTEEEEECCBCSSSBCC
T ss_pred             cceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC----CCccccceEEEE----CCEEEEEeCCCCCCccc
Confidence            9999999999999999988777789999999999999998754    567888887776    7899999998754 578


Q ss_pred             eEEEEECCCCCCCCccccCCCchhhcch-hhhHHHhhccccc
Q 012184          286 EVFVMRLKPRDIPRPKIFQSPAAAAAAA-SVTAAYALAKSEK  326 (469)
Q Consensus       286 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~gg~~~  326 (469)
                      ++++||+.++.|..+..+|.++..+.++ ....+|++||...
T Consensus       232 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  273 (308)
T 1zgk_A          232 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG  273 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             eEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence            9999999999999999888887766444 4456889998654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.2e-40  Score=316.76  Aligned_cols=241  Identities=16%  Similarity=0.203  Sum_probs=210.3

Q ss_pred             CEEEccc-----CC-CcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC-
Q 012184            1 MLLRCSI-----RN-YTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-   73 (469)
Q Consensus         1 l~~~GG~-----~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~-   73 (469)
                      |||+||.     .. ....+ ++++||+.+++|+.++++                |.+|.+|++++++++||++||... 
T Consensus        48 iyv~GG~~~~~~~~~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~  110 (315)
T 4asc_A           48 VFVAGGLFYNEDNKEDPMSA-YFLQFDHLDSEWLGMPPL----------------PSPRCLFGLGEALNSIYVVGGREIK  110 (315)
T ss_dssp             EEEEEEEEECSSCSSSCEEE-EEEEEETTTTEEEECCCB----------------SSCEESCEEEEETTEEEEECCEESS
T ss_pred             EEEEcCcccCCCCCcccccc-ceEEecCCCCeEEECCCC----------------CcchhceeEEEECCEEEEEeCCcCC
Confidence            6999995     22 23334 799999999999999877                789999999999999999999763 


Q ss_pred             -CCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC
Q 012184           74 -KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  152 (469)
Q Consensus        74 -~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p  152 (469)
                       .....+++++||+.+++|+.++   ++|.+|.+|++++++++||++||.......++++++||+.+++|+.++   ++|
T Consensus       111 ~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p  184 (315)
T 4asc_A          111 DGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQ  184 (315)
T ss_dssp             TTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCS
T ss_pred             CCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCC
Confidence             3446788999999999999998   789999999999999999999999666667999999999999999986   788


Q ss_pred             CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC-----
Q 012184          153 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----  227 (469)
Q Consensus       153 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----  227 (469)
                      .+|.+|+++++ +++|||+||.+....++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+..     
T Consensus       185 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~  260 (315)
T 4asc_A          185 TARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE---AFPQERSSLSLVSLVGTLYAIGGFATLETESG  260 (315)
T ss_dssp             SCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred             CchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECC---CCCCcccceeEEEECCEEEEECCccccCcCCc
Confidence            99999999998 668999999987778899999999999999985   789999999999999999999997531     


Q ss_pred             ----CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEec
Q 012184          228 ----NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG  278 (469)
Q Consensus       228 ----~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG  278 (469)
                          ...+++++||+.+++|+.+.      |.+|.+|+++++    ++.||++..
T Consensus       261 ~~~~~~~~~v~~yd~~~~~W~~~~------~~~r~~~~~~~~----~~~l~v~~~  305 (315)
T 4asc_A          261 ELVPTELNDIWRYNEEEKKWEGVL------REIAYAAGATFL----PVRLNVLRL  305 (315)
T ss_dssp             CEEEEEEEEEEEEETTTTEEEEEE------SCSSCCSSCEEE----EEEECGGGS
T ss_pred             cccccccCcEEEecCCCChhhhhc------cCCcCccceEEe----CCEEEEEEe
Confidence                23678999999999999982      456888988877    788998864

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=309.58  Aligned_cols=233  Identities=13%  Similarity=0.155  Sum_probs=210.0

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI   80 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~   80 (469)
                      |||+||.. ...++ ++++||+.+++|+.++++                |.+|.+|++++++++||++||........++
T Consensus        58 lyv~GG~~-~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  119 (306)
T 3ii7_A           58 VYILGGSQ-LFPIK-RMDCYNVVKDSWYSKLGP----------------PTPRDSLAACAAEGKIYTSGGSEVGNSALYL  119 (306)
T ss_dssp             EEEECCBS-SSBCC-EEEEEETTTTEEEEEECC----------------SSCCBSCEEEEETTEEEEECCBBTTBSCCCC
T ss_pred             EEEEeCCC-CCCcc-eEEEEeCCCCeEEECCCC----------------CccccceeEEEECCEEEEECCCCCCCcEeee
Confidence            69999987 66778 999999999999999887                7899999999999999999998755557788


Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCC---ccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK---LLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~---~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      +++||+.+++|+.++   ++|.+|.+|++++++++||++||......   ..+++++||+.+++|+.+.   ++|.+|.+
T Consensus       120 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~  193 (306)
T 3ii7_A          120 FECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKN  193 (306)
T ss_dssp             EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBS
T ss_pred             EEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---Cccchhhc
Confidence            999999999999997   78999999999999999999999876543   3899999999999999997   78899999


Q ss_pred             ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184          158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      |+++.+ +++||++||.+....++++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+.....+++++||
T Consensus       194 ~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd  269 (306)
T 3ii7_A          194 HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS---PMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYN  269 (306)
T ss_dssp             CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECC---CCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEE
T ss_pred             ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC---CCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEc
Confidence            999998 678999999887777899999999999999975   7899999999999999999999998777789999999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184          238 MTKLAWSILTSVKGRNPLASEGLSVCSA  265 (469)
Q Consensus       238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~  265 (469)
                      +.+++|+.++.+    |.+|.+|+++++
T Consensus       270 ~~~~~W~~~~~~----~~~r~~~~~~~~  293 (306)
T 3ii7_A          270 TETDKWVANSKV----RAFPVTSCLICV  293 (306)
T ss_dssp             TTTTEEEEEEEE----ECCSCTTCEEEE
T ss_pred             CCCCeEEeCCCc----ccccceeEEEEE
Confidence            999999999776    456788887766

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-39  Score=312.59  Aligned_cols=241  Identities=16%  Similarity=0.233  Sum_probs=209.0

Q ss_pred             CEEEcccCC---C--cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC-C
Q 012184            1 MLLRCSIRN---Y--TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-K   74 (469)
Q Consensus         1 l~~~GG~~~---~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~-~   74 (469)
                      ||++||...   +  ..+++++++||+.+++|..++++                |.+|.+|++++++++||++||... .
T Consensus        59 lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~iyv~GG~~~~~  122 (318)
T 2woz_A           59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL----------------PSARCLFGLGEVDDKIYVVAGKDLQT  122 (318)
T ss_dssp             EEEEESSCC-------CCCBEEEEEETTTTEEEECSCB----------------SSCBCSCEEEEETTEEEEEEEEBTTT
T ss_pred             EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC----------------CccccccceEEECCEEEEEcCccCCC
Confidence            699999521   1  12332599999999999999877                789999999999999999999874 3


Q ss_pred             CCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184           75 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  154 (469)
Q Consensus        75 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~  154 (469)
                      ....+++++||+.+++|+.++   ++|.+|.+|++++++++||++||........+++++||+.+++|+.++   ++|.+
T Consensus       123 ~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~  196 (318)
T 2woz_A          123 EASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTP  196 (318)
T ss_dssp             CCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSC
T ss_pred             CcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCC
Confidence            446789999999999999998   789999999999999999999998766667899999999999999986   78899


Q ss_pred             CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC-------
Q 012184          155 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-------  227 (469)
Q Consensus       155 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-------  227 (469)
                      |..|+++++ +++||||||.+.....+++++||+.+++|+.+.   ++|.+|..|+++.++++|||+||.+..       
T Consensus       197 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~  272 (318)
T 2woz_A          197 RSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT---EFPQERSSISLVSLAGSLYAIGGFAMIQLESKEF  272 (318)
T ss_dssp             CBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECC---CCSSCCBSCEEEEETTEEEEECCBCCBC----CC
T ss_pred             cccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECC---CCCCcccceEEEEECCEEEEECCeeccCCCCcee
Confidence            999999988 668999999887777899999999999999975   789999999999999999999997642       


Q ss_pred             --CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEe
Q 012184          228 --NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG  277 (469)
Q Consensus       228 --~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~G  277 (469)
                        ...+++|+||+.+++|+.+  +    |.+|++|+++.+    +++|||+.
T Consensus       273 ~~~~~~~v~~yd~~~~~W~~~--~----~~~r~~~~~~~~----~~~iyi~~  314 (318)
T 2woz_A          273 APTEVNDIWKYEDDKKEWAGM--L----KEIRYASGASCL----ATRLNLFK  314 (318)
T ss_dssp             BCCBCCCEEEEETTTTEEEEE--E----SCCGGGTTCEEE----EEEEEGGG
T ss_pred             ccceeeeEEEEeCCCCEehhh--c----ccccccccceee----CCEEEEEE
Confidence              3468999999999999998  2    466788988887    78898764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=302.83  Aligned_cols=232  Identities=18%  Similarity=0.264  Sum_probs=208.4

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCc---eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCC
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLA---WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD   77 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~---W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~   77 (469)
                      ||++||......++ ++++||+.+++   |+.++++                |.+|.+|++++++++||++||..... .
T Consensus        65 l~v~GG~~~~~~~~-~~~~~d~~~~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~-~  126 (301)
T 2vpj_A           65 IYVIGGYDGRSRLS-SVECLDYTADEDGVWYSVAPM----------------NVRRGLAGATTLGDMIYVSGGFDGSR-R  126 (301)
T ss_dssp             EEEECCBCSSCBCC-CEEEEETTCCTTCCCEEECCC----------------SSCCBSCEEEEETTEEEEECCBCSSC-B
T ss_pred             EEEEcCCCCCccCc-eEEEEECCCCCCCeeEECCCC----------------CCCccceeEEEECCEEEEEcccCCCc-c
Confidence            69999988777788 99999999999   9999877                78999999999999999999987544 5


Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      .+++++||+.+++|+.++   ++|.+|.+|++++++++||++||.+... ..+++++||+.+++|+.+.   ++|.+|.+
T Consensus       127 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~  199 (301)
T 2vpj_A          127 HTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVT---PMATKRSG  199 (301)
T ss_dssp             CCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEEC---CCSSCCBS
T ss_pred             cceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCC---CCCccccc
Confidence            788999999999999998   7899999999999999999999987654 6899999999999999985   77899999


Q ss_pred             ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184          158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      |+++.+ +++||++||.+.....+++++||+.+++|..+.   ++|.+|..|+++.++++|||+||.+.....+++++||
T Consensus       200 ~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd  275 (301)
T 2vpj_A          200 AGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT---SMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYD  275 (301)
T ss_dssp             CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEE
T ss_pred             ceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECC---CCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEc
Confidence            999998 678999999987777899999999999999975   7899999999999999999999987776778999999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184          238 MTKLAWSILTSVKGRNPLASEGLSVCSA  265 (469)
Q Consensus       238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~  265 (469)
                      +.+++|+.++.+    |.+|.+|+++.+
T Consensus       276 ~~~~~W~~~~~~----~~~r~~~~~~~~  299 (301)
T 2vpj_A          276 PIIDSWEVVTSM----GTQRCDAGVCVL  299 (301)
T ss_dssp             TTTTEEEEEEEE----EEEEESCEEEEE
T ss_pred             CCCCeEEEcCCC----CcccccceEEEe
Confidence            999999999776    456778876654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=9.9e-39  Score=311.82  Aligned_cols=262  Identities=18%  Similarity=0.207  Sum_probs=209.5

Q ss_pred             CCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECC--CCeEEEeecCCCCC-CCCcceEEEEECCEEEEEecc-
Q 012184           47 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE--TNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGE-  122 (469)
Q Consensus        47 ~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~-  122 (469)
                      +++|.+|.+|++++++++||++||...     +++++||+.  +++|+.++   ++| .+|.+|++++++++||+|||. 
T Consensus         4 ~~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~   75 (357)
T 2uvk_A            4 PETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIG   75 (357)
T ss_dssp             CCCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEE
T ss_pred             CCCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCC
Confidence            456889999999999999999999864     359999998  59999998   788 899999999999999999998 


Q ss_pred             C---CCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc---------------------
Q 012184          123 D---RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---------------------  178 (469)
Q Consensus       123 ~---~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---------------------  178 (469)
                      .   .....++++++||+.+++|+.+.+..  |.+|.+|+++++ +++||||||.+...                     
T Consensus        76 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (357)
T 2uvk_A           76 KNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI  152 (357)
T ss_dssp             ECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence            2   22346899999999999999998533  589999999887 77899999976432                     


Q ss_pred             -------------ccCcEEEEECCCCceEeeeecCCCCCCC-cceEEEEECCEEEEEecCCCCC-CcceEEEEEC--CCC
Q 012184          179 -------------FFNDLHVLDLQTNEWSQPEIKGDLVTGR-AGHAGITIDENWYIVGGGDNNN-GCQETIVLNM--TKL  241 (469)
Q Consensus       179 -------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r-~~~~~~~~~~~l~v~GG~~~~~-~~~d~~~~d~--~~~  241 (469)
                                   .++++++||+.+++|+.+.   ++|.+| ..|+++.++++||||||.+... ..++++.||+  .++
T Consensus       153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~  229 (357)
T 2uvk_A          153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL  229 (357)
T ss_dssp             HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred             hhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence                         4689999999999999985   566655 4599999999999999975443 3678999987  899


Q ss_pred             cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC------------------CCceEEEEECCCCCCCCcccc
Q 012184          242 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK------------------YNNEVFVMRLKPRDIPRPKIF  303 (469)
Q Consensus       242 ~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~~~d~~~~~w~~~~~~  303 (469)
                      .|+.++.++  .|..|.+|+++..    +++|||+||.+..                  ..+++++||+.+++|..+..+
T Consensus       230 ~W~~~~~~~--~~~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  303 (357)
T 2uvk_A          230 KWNKLAPVS--SPDGVAGGFAGIS----NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL  303 (357)
T ss_dssp             EEEECCCSS--TTTCCBSCEEEEE----TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred             cEEecCCCC--CCcccccceEEEE----CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence            999998763  3344566766666    7899999997421                  236799999999999999999


Q ss_pred             CCCchhhcch-hhhHHHhhccccccc
Q 012184          304 QSPAAAAAAA-SVTAAYALAKSEKLD  328 (469)
Q Consensus       304 ~~~~~~~~~~-~~~~~~~~gg~~~~~  328 (469)
                      |.++..+.++ ....+|+|||.....
T Consensus       304 p~~r~~~~~~~~~~~i~v~GG~~~~~  329 (357)
T 2uvk_A          304 SQGRAYGVSLPWNNSLLIIGGETAGG  329 (357)
T ss_dssp             SSCCBSSEEEEETTEEEEEEEECGGG
T ss_pred             CCCcccceeEEeCCEEEEEeeeCCCC
Confidence            9988877555 445699999976543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=7.3e-38  Score=330.03  Aligned_cols=268  Identities=14%  Similarity=0.138  Sum_probs=220.1

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeee-ecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCC
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLR-LETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD   77 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~   77 (469)
                      |||+||... ..++ ++++||+.+++|+.++ +.+.           +.+|.+|.+|+++++  +++||++||.......
T Consensus       400 iyv~GG~~~-~~~~-~v~~yd~~~~~W~~~~~~~p~-----------~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~  466 (695)
T 2zwa_A          400 VFYMGGSNP-YRVN-EILQLSIHYDKIDMKNIEVSS-----------SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQG  466 (695)
T ss_dssp             EEEECCBSS-SBCC-CEEEEEECSSCEEEEECCCCC-----------SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCB
T ss_pred             EEEECCCCC-CCcC-cEEEEECCCCeEEEeccCCCC-----------CCCCccccceEEEEEccCCEEEEEcCCCCCCCc
Confidence            699999876 6778 9999999999999998 5321           234889999999999  9999999999876656


Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      .+++|+||+.+++|+.++   ++|.+|.+|+++++ +++||+|||.+...    ++++||+.+++|+.+.+.|.+|.+|.
T Consensus       467 ~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~  539 (695)
T 2zwa_A          467 LSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSL  539 (695)
T ss_dssp             CCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred             cccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCccc
Confidence            788999999999999997   89999999999997 99999999987654    89999999999999998888999999


Q ss_pred             CceEEEEc-C-cEEEEEecCCCC--cccCcEEEEECCCCc------eEeeeecCCCCCCCcceEEEEEC-CEEEEEecCC
Q 012184          157 DHSAALHA-N-RYLIVFGGCSHS--IFFNDLHVLDLQTNE------WSQPEIKGDLVTGRAGHAGITID-ENWYIVGGGD  225 (469)
Q Consensus       157 ~~~~~~~~-~-~~l~v~GG~~~~--~~~~~i~~~d~~~~~------W~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~  225 (469)
                      +|++++++ + ++||||||....  ..++++++||+.+++      |+.+..  .++.+|.+|+++.++ ++|||+||.+
T Consensus       540 ~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~iyv~GG~~  617 (695)
T 2zwa_A          540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYITPRKLLIVGGTS  617 (695)
T ss_dssp             BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEEEEECCBC
T ss_pred             ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEeCCCEEEEECCcc
Confidence            99977764 2 789999998543  567999999999999      888763  126889999999999 9999999986


Q ss_pred             CCC---CcceEEEEECCCCcEEEeccCCCCC----CCCCCCcceEEEEEcCCcEEEEEeccC-----CCCCceEEEEECC
Q 012184          226 NNN---GCQETIVLNMTKLAWSILTSVKGRN----PLASEGLSVCSAIIEGEHHLVAFGGYN-----GKYNNEVFVMRLK  293 (469)
Q Consensus       226 ~~~---~~~d~~~~d~~~~~W~~~~~~~~~~----p~~r~~~s~~~~~~~~~~~l~v~GG~~-----~~~~~~~~~~d~~  293 (469)
                      ...   ..+++++||+.+++|+.++ ++...    ++.+.+|+++.+   +++.|||+||..     +...+++|.+|+.
T Consensus       618 ~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~---~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~  693 (695)
T 2zwa_A          618 PSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVST---SMGTIHIIGGGATCYGFGSVTNVGLKLIAI  693 (695)
T ss_dssp             SSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSCEEECCCEEEEEC
T ss_pred             CCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEe---CCCEEEEEeCCccCcCccccccceEEEEEE
Confidence            543   4789999999999999653 23211    125677875544   233899999953     3345689999875


Q ss_pred             C
Q 012184          294 P  294 (469)
Q Consensus       294 ~  294 (469)
                      .
T Consensus       694 ~  694 (695)
T 2zwa_A          694 A  694 (695)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=1.4e-36  Score=320.16  Aligned_cols=260  Identities=16%  Similarity=0.260  Sum_probs=213.2

Q ss_pred             CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee-c--CCCCCCCCcceEEEEE--CCEEEEEeccCC
Q 012184           50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME-T--SGKVPVARGGHSVTLV--GSRLIIFGGEDR  124 (469)
Q Consensus        50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~-~--~g~~p~~r~~~~~~~~--~~~lyi~GG~~~  124 (469)
                      |.+|++|+++ +++.||++||...  ...+++++||+.+++|+.++ +  .+.+|.+|.+|+++++  +++||+|||.+.
T Consensus       386 p~rr~g~~~~-~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~  462 (695)
T 2zwa_A          386 INRKFGDVDV-AGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA  462 (695)
T ss_dssp             TCCBSCEEEE-CSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS
T ss_pred             CCCceeEEEE-ECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC
Confidence            6677776555 8999999999876  46788999999999999998 4  3568999999999999  999999999987


Q ss_pred             CCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCC
Q 012184          125 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT  204 (469)
Q Consensus       125 ~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~  204 (469)
                      ....++++++||+.+++|+.+.   ++|.+|++|+++++.+++||||||.+...   ++++||+.+++|+.+...+++|.
T Consensus       463 ~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~  536 (695)
T 2zwa_A          463 PHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQ  536 (695)
T ss_dssp             TTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGG
T ss_pred             CCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCC
Confidence            6657899999999999999985   78999999999997677899999987654   89999999999999987667899


Q ss_pred             CCcceEEEEEC---CEEEEEecCCCC--CCcceEEEEECCCCc------EEEeccCCCCCCCCCCCcceEEEEEcCC-cE
Q 012184          205 GRAGHAGITID---ENWYIVGGGDNN--NGCQETIVLNMTKLA------WSILTSVKGRNPLASEGLSVCSAIIEGE-HH  272 (469)
Q Consensus       205 ~r~~~~~~~~~---~~l~v~GG~~~~--~~~~d~~~~d~~~~~------W~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~  272 (469)
                      +|.+|+++.++   ++|||+||....  ...+++++||+.++.      |+.+..++   +.+|.+|+++.+    + ++
T Consensus       537 ~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p---~~~R~~~~~~~~----~~~~  609 (695)
T 2zwa_A          537 NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP---LFQRYGSQIKYI----TPRK  609 (695)
T ss_dssp             SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG---GGCCBSCEEEEE----ETTE
T ss_pred             cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC---CCCcccceEEEe----CCCE
Confidence            99999987776   899999998543  457899999999999      88887642   467889987766    6 89


Q ss_pred             EEEEeccCCC----CCceEEEEECCCCCCCCccccCC-------C-chhhcchh-hh-HHHhhccccc
Q 012184          273 LVAFGGYNGK----YNNEVFVMRLKPRDIPRPKIFQS-------P-AAAAAAAS-VT-AAYALAKSEK  326 (469)
Q Consensus       273 l~v~GG~~~~----~~~~~~~~d~~~~~w~~~~~~~~-------~-~~~~~~~~-~~-~~~~~gg~~~  326 (469)
                      |||+||.+..    ..+++++||+.++.|.... +|.       | ...+.++. .. .+|++||...
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~  676 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT  676 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence            9999998643    4789999999999998432 221       1 12233333 33 5889988653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=2e-33  Score=295.83  Aligned_cols=292  Identities=10%  Similarity=0.043  Sum_probs=217.5

Q ss_pred             CEEEcccCCCc------ccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCee--eE-EECCEEEEEccc
Q 012184            1 MLLRCSIRNYT------LLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC--MV-KWGTKLLILGGH   71 (469)
Q Consensus         1 l~~~GG~~~~~------~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~-~~~~~iy~~GG~   71 (469)
                      ||++||...+.      ..+ .+++||+.+++|+.++.+                |.+|..|+  ++ ..+++||++||+
T Consensus       200 l~v~GG~~~~~~~~~~~~~~-~~~~yd~~t~~w~~~~~~----------------~~~~~~~~~~~~~~~~g~lyv~GG~  262 (656)
T 1k3i_A          200 VLMWSSYRNDAFGGSPGGIT-LTSSWDPSTGIVSDRTVT----------------VTKHDMFCPGISMDGNGQIVVTGGN  262 (656)
T ss_dssp             EEEEEECCCTTTCSCCCSEE-EEEEECTTTCCBCCCEEE----------------ECSCCCSSCEEEECTTSCEEEECSS
T ss_pred             EEEEecccccccccCCCCeE-EEEEEeCCCCcEEeCccc----------------CCCCCCccccccCCCCCCEEEeCCC
Confidence            68999975432      234 789999999999999887                44554443  44 358999999997


Q ss_pred             cCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCC-
Q 012184           72 YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ-  149 (469)
Q Consensus        72 ~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g-  149 (469)
                      ...     ++++||+.+++|..++   ++|.+|.+|+++++ +++||++||........+++++||+.+++|+.++..+ 
T Consensus       263 ~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~  334 (656)
T 1k3i_A          263 DAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV  334 (656)
T ss_dssp             STT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred             CCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence            653     5999999999999997   89999999999999 9999999996444446889999999999999985432 


Q ss_pred             -CCCCCCCCceEEEEcCcEEEEEecCCCC----cccCcEEEEECCCCceEeeeecCCC----CCCCcceEEEE---ECCE
Q 012184          150 -TPPAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQTNEWSQPEIKGDL----VTGRAGHAGIT---IDEN  217 (469)
Q Consensus       150 -~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~~~~W~~~~~~~~~----p~~r~~~~~~~---~~~~  217 (469)
                       +++.++. ++++. .++++|+|||.++.    ...+++++||+.++.|.........    +.++..++++.   ++++
T Consensus       335 ~p~~~~~~-~~~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~  412 (656)
T 1k3i_A          335 NPMLTADK-QGLYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK  412 (656)
T ss_dssp             GGGCCCCT-TGGGT-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTE
T ss_pred             cccccccc-cceee-cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCe
Confidence             2333333 23333 36779999997643    2467899999999998764322111    12344555553   4899


Q ss_pred             EEEEecCCC---CCCcc---eEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC-------CCC
Q 012184          218 WYIVGGGDN---NNGCQ---ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-------KYN  284 (469)
Q Consensus       218 l~v~GG~~~---~~~~~---d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~-------~~~  284 (469)
                      |||+||.+.   ....+   ++++||+.++.|..+.  ....|.+|..|+++.+   ++++|||+||.+.       ...
T Consensus       413 i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~~~~~l---~~g~i~v~GG~~~~~~~~~~~~~  487 (656)
T 1k3i_A          413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFHTSVVL---PDGSTFITGGQRRGIPFEDSTPV  487 (656)
T ss_dssp             EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSCEEEEC---TTSCEEEECCBSBCCTTCCCSBC
T ss_pred             EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccCCeEEC---CCCCEEEECCcccCcCcCCCCcc
Confidence            999999643   22334   7889999999999876  1233567777764433   3579999999752       346


Q ss_pred             ceEEEEECCCCCCCCccccCCCchhhcchh---hhHHHhhccc
Q 012184          285 NEVFVMRLKPRDIPRPKIFQSPAAAAAAAS---VTAAYALAKS  324 (469)
Q Consensus       285 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~~gg~  324 (469)
                      +++++||+.++.|..+..++.++..|.+++   ...+|++||.
T Consensus       488 ~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          488 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            789999999999999999999988886554   3568889885

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.97  E-value=2.3e-29  Score=264.87  Aligned_cols=263  Identities=10%  Similarity=0.053  Sum_probs=197.4

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcc
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~   79 (469)
                      ||++||....     ++++||+.+++|+.++++                |.+|.+|+++++ +++||++||........+
T Consensus       256 lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~----------------~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          256 IVVTGGNDAK-----KTSLYDSSSDSWIPGPDM----------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             EEEECSSSTT-----CEEEEEGGGTEEEECCCC----------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred             EEEeCCCCCC-----ceEEecCcCCceeECCCC----------------CccccccceEEecCCeEEEEeCcccCCcccc
Confidence            6899997543     799999999999999876                779999999999 999999999654444678


Q ss_pred             eEEEEECCCCeEEEeecCC--CCCCCCcceEEEEECCEEEEEeccCCCC---CccCcEEEEECCCCeEEEeeeCCCC---
Q 012184           80 IVRFIDLETNLCGVMETSG--KVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMTWDAVEVTQTP---  151 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~lyi~GG~~~~~---~~~~~v~~~d~~t~~W~~~~~~g~~---  151 (469)
                      ++++||+.+++|+.++..+  +++.++.. +++..++++|+|||.+...   ...+++++||+.++.|.........   
T Consensus       315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~  393 (656)
T 1k3i_A          315 NGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG  393 (656)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             cceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence            8999999999999985432  34444443 5555789999999986431   2477899999999999765422111   


Q ss_pred             -CCCCCCceEEEE--cCcEEEEEecCCC---CcccC---cEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEE
Q 012184          152 -PAPRYDHSAALH--ANRYLIVFGGCSH---SIFFN---DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIV  221 (469)
Q Consensus       152 -p~~r~~~~~~~~--~~~~l~v~GG~~~---~~~~~---~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~  221 (469)
                       +.++..++++++  .+++||+|||...   ...++   .+++||+.+++|..+. .+.+|.+|..|+++.+ +++|||+
T Consensus       394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~  472 (656)
T 1k3i_A          394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFIT  472 (656)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEE
T ss_pred             cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEE
Confidence             223444555542  3788999999642   23344   7899999999999875 3578999999998888 8999999


Q ss_pred             ecCCC------CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC-CC---CCceEEEEE
Q 012184          222 GGGDN------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-GK---YNNEVFVMR  291 (469)
Q Consensus       222 GG~~~------~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~-~~---~~~~~~~~d  291 (469)
                      ||.+.      ....+++++||+.+++|+.++.+    |.+|.+|+++++.  ++++|||+||.. +.   ..-++.+|.
T Consensus       473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~----~~~R~~hs~a~ll--~dg~v~v~GG~~~~~~~~~~~~~e~~~  546 (656)
T 1k3i_A          473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----SIVRVYHSISLLL--PDGRVFNGGGGLCGDCTTNHFDAQIFT  546 (656)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC----SSCCCTTEEEEEC--TTSCEEEEECCCCTTCSCCCCEEEEEE
T ss_pred             CCcccCcCcCCCCcccceEEEcCCCCceeecCCC----CCccccccHhhcC--CCcEEEecCCCCCCCCCCCeeEEEEEe
Confidence            99653      23467899999999999998755    5678899866543  356899999953 21   223456666


Q ss_pred             C
Q 012184          292 L  292 (469)
Q Consensus       292 ~  292 (469)
                      +
T Consensus       547 P  547 (656)
T 1k3i_A          547 P  547 (656)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=8.8e-05  Score=66.40  Aligned_cols=205  Identities=15%  Similarity=0.019  Sum_probs=129.5

Q ss_pred             CcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcE
Q 012184           53 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV  132 (469)
Q Consensus        53 r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v  132 (469)
                      -+-+.....++.||...|..+.    +.+..+|+.|++=..-.   ++|....+.+++..+++||+...      ..+.+
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw------~~~~v   87 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTW------RNHEG   87 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEES------SSSEE
T ss_pred             cccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEe------eCCEE
Confidence            3445667779999999886543    35999999999876554   46667778888999999999853      35679


Q ss_pred             EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCC-cceE
Q 012184          133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR-AGHA  210 (469)
Q Consensus       133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r-~~~~  210 (469)
                      ++||+.+.+-..--     +.+..+.+++.. +++||+.-|      .+.++.+|+.+.+-.. +.+. ..+.+. ..-.
T Consensus        88 ~v~D~~tl~~~~ti-----~~~~~Gwglt~d-g~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNe  154 (243)
T 3mbr_X           88 FVYDLATLTPRARF-----RYPGEGWALTSD-DSHLYMSDG------TAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNE  154 (243)
T ss_dssp             EEEETTTTEEEEEE-----ECSSCCCEEEEC-SSCEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEE
T ss_pred             EEEECCcCcEEEEE-----eCCCCceEEeeC-CCEEEEECC------CCeEEEEeCCCCeEEEEEEEc-cCCccccccee
Confidence            99999998754432     223356666654 567888654      3679999999876433 3321 222332 2224


Q ss_pred             EEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCC-----CCCCcceEEEEEcC-CcEEEEEeccCCCCC
Q 012184          211 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL-----ASEGLSVCSAIIEG-EHHLVAFGGYNGKYN  284 (469)
Q Consensus       211 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~-----~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~  284 (469)
                      +..+++.+|+---     ..+++.+.|+.+.+-...-.+.+..|.     ...+..+--+..++ .+.|||.|-.    .
T Consensus       155 Le~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~----w  225 (243)
T 3mbr_X          155 LEWVNGELLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR----W  225 (243)
T ss_dssp             EEEETTEEEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT----C
T ss_pred             eEEeCCEEEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC----C
Confidence            5667888885432     256899999998765433332221111     11222333444554 6799988842    4


Q ss_pred             ceEEEEEC
Q 012184          285 NEVFVMRL  292 (469)
Q Consensus       285 ~~~~~~d~  292 (469)
                      ..+|...+
T Consensus       226 p~~~~v~~  233 (243)
T 3mbr_X          226 PMLYEIRL  233 (243)
T ss_dssp             SEEEEEEE
T ss_pred             CcEEEEEE
Confidence            45555544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.37  E-value=0.0016  Score=61.56  Aligned_cols=229  Identities=10%  Similarity=0.049  Sum_probs=134.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEE-Ee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~~   94 (469)
                      .+-.||+.++++...-....           ...+.+...+.++..++++|+....      .+.+.++|+.+++-. .+
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~-----------n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i   80 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRA-----------NGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRI   80 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHH-----------HSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCEEhhhhHhhh-----------cCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEc
Confidence            78999999998764321100           0014455567777889999999652      245999999998863 34


Q ss_pred             ecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCC-CCCceEEEEcCcEEEEEe
Q 012184           95 ETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP-RYDHSAALHANRYLIVFG  172 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~G  172 (469)
                      + .  ..   .-+.++. -++++|+....      .+.+.++|+.+++-...-..|..... ..-+.++. .++++|+..
T Consensus        81 ~-~--~~---~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~  147 (328)
T 3dsm_A           81 T-G--FT---SPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNC  147 (328)
T ss_dssp             E-C--CS---SEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEE
T ss_pred             C-C--CC---CCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEc
Confidence            3 1  11   1223333 57899987642      45699999999886543322321100 01223333 477899874


Q ss_pred             cCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCC-----cceEEEEECCCCcEEEe
Q 012184          173 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNG-----CQETIVLNMTKLAWSIL  246 (469)
Q Consensus       173 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~-----~~d~~~~d~~~~~W~~~  246 (469)
                      - +   ..+.+.++|+.+.+....-..+..|     +.++.. ++++|+.........     .+.++++|+.+.+....
T Consensus       148 ~-~---~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~  218 (328)
T 3dsm_A          148 W-S---YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ  218 (328)
T ss_dssp             C-T---TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred             C-C---CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence            2 1   1367999999988765432222222     223332 577877754321111     26799999998876532


Q ss_pred             ccCC-CCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184          247 TSVK-GRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       247 ~~~~-~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~  298 (469)
                      -.++ +..        ...+.+++ +..||+..+       .++++|+.+....
T Consensus       219 ~~~~~g~~--------p~~la~~~d~~~lyv~~~-------~v~~~d~~t~~~~  257 (328)
T 3dsm_A          219 FKFKLGDW--------PSEVQLNGTRDTLYWINN-------DIWRMPVEADRVP  257 (328)
T ss_dssp             EECCTTCC--------CEEEEECTTSCEEEEESS-------SEEEEETTCSSCC
T ss_pred             EecCCCCC--------ceeEEEecCCCEEEEEcc-------EEEEEECCCCcee
Confidence            2222 111        12334444 568887654       6999999877653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.36  E-value=0.00036  Score=66.08  Aligned_cols=226  Identities=8%  Similarity=-0.026  Sum_probs=128.8

Q ss_pred             ceEEEEccCCce-eeeeecccccCCccccCCCCCCCCCCcCeeeEE-ECCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAW-SNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W-~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+.++|+.+++- ..++..                   ...+.++. .+++||+...+      .+.+.++|+.+++-..
T Consensus        65 ~v~viD~~t~~~~~~i~~~-------------------~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRITGF-------------------TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITG  119 (328)
T ss_dssp             EEEEEETTTCCEEEEEECC-------------------SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEE
T ss_pred             EEEEEECcccEEEEEcCCC-------------------CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEE
Confidence            788899988775 333221                   11233334 67899998642      2459999999998654


Q ss_pred             eecCCCCC-CCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184           94 METSGKVP-VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  172 (469)
Q Consensus        94 ~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G  172 (469)
                      ....|... ....-..++..+++||+..- .    ..+.+.++|+.+++....-..+..|     +.++...++++|+..
T Consensus       120 ~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~  189 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTIT  189 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEB
T ss_pred             EEEcCCccccCCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEE
Confidence            33222200 00012234447889998741 1    2456999999999876543333222     334444467788765


Q ss_pred             cCCCCcc-----cCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          173 GCSHSIF-----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       173 G~~~~~~-----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      .......     .+.++++|+.+.+....-   ..+.......++..  ++.+|+..+        .+++||+.+.....
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~---~~~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQF---KFKLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPV  258 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEETTTTEEEEEE---ECCTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCS
T ss_pred             CCCccCCccccCCceEEEEECCCCeEEEEE---ecCCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceee
Confidence            3221111     368999999988765322   12222233344544  456777633        78999998776421


Q ss_pred             eccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184          246 LTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       246 ~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      ....+.      .+.....+.+++ ++.|||....+-...+.+++||++
T Consensus       259 ~~~~~~------~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          259 RPFLEF------RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SCSBCC------CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             eeeecC------CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            111110      022233455665 678998863222235679999987

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.22  E-value=0.00038  Score=62.82  Aligned_cols=192  Identities=9%  Similarity=-0.028  Sum_probs=118.6

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  135 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~  135 (469)
                      ......++.||+..|..+    .+.+.++|+.|++=..-.   +++....+.+++..+++||+...      ..+.+++|
T Consensus        46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~  112 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTW------KNGLGFVW  112 (262)
T ss_dssp             EEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEES------SSSEEEEE
T ss_pred             ceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEe------eCCEEEEE
Confidence            455555899999988654    245999999999865544   35556667778889999999854      25679999


Q ss_pred             ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecC-CCCCCCcceEEEE
Q 012184          136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKG-DLVTGRAGHAGIT  213 (469)
Q Consensus       136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~-~~p~~r~~~~~~~  213 (469)
                      |+.+.+-..--     +.+-.+.+++.. ++.||+.-|      .+.++.+|+.+.+-.. +.+.. ..|..... .+..
T Consensus       113 D~~t~~~~~ti-----~~~~eG~glt~d-g~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN-ELe~  179 (262)
T 3nol_A          113 NIRNLRQVRSF-----NYDGEGWGLTHN-DQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELN-ELEW  179 (262)
T ss_dssp             ETTTCCEEEEE-----ECSSCCCCEEEC-SSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEE-EEEE
T ss_pred             ECccCcEEEEE-----ECCCCceEEecC-CCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccc-eeEE
Confidence            99988754322     222355666654 566888644      3679999999876433 33211 11222211 3455


Q ss_pred             ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCC----CCCCcceEEEEEcC-CcEEEEEec
Q 012184          214 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL----ASEGLSVCSAIIEG-EHHLVAFGG  278 (469)
Q Consensus       214 ~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~----~r~~~s~~~~~~~~-~~~l~v~GG  278 (469)
                      .++.||+---     ..+++.+.|+.+.+-...-.+++..|.    ......+--+..++ .+.|||.|-
T Consensus       180 ~~G~lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          180 VDGEIFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ETTEEEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ECCEEEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6888886421     246899999998875543333321111    01122233344444 678998884

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.01  E-value=0.0012  Score=59.11  Aligned_cols=139  Identities=17%  Similarity=0.073  Sum_probs=92.9

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+..+|+.+++=..-.+.                |...++..++..+++||+...      ..+.+++||+.|.+-..--
T Consensus        44 ~v~~vD~~tgkv~~~~~l----------------~~~~fgeGi~~~~~~ly~ltw------~~~~v~v~D~~tl~~~~ti  101 (243)
T 3mbr_X           44 SVRKVDLETGRILQRAEV----------------PPPYFGAGIVAWRDRLIQLTW------RNHEGFVYDLATLTPRARF  101 (243)
T ss_dssp             EEEEEETTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeC----------------CCCcceeEEEEeCCEEEEEEe------eCCEEEEEECCcCcEEEEE
Confidence            789999999987665554                445577888899999999853      2355999999998754332


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce-EEEEcCcEEEEEecC
Q 012184           96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS-AALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~-~~~~~~~~l~v~GG~  174 (469)
                           |.+..+.+++.-++.||+--|       .+.++.+|+.|.+-..--..+..+.+..... +..+ +++||+-- +
T Consensus       102 -----~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv-w  167 (243)
T 3mbr_X          102 -----RYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV-W  167 (243)
T ss_dssp             -----ECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-T
T ss_pred             -----eCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE-C
Confidence                 222357777766778888643       4569999999977543322222233332222 2333 77788532 1


Q ss_pred             CCCcccCcEEEEECCCCceE
Q 012184          175 SHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       175 ~~~~~~~~i~~~d~~~~~W~  194 (469)
                          ..|+|.+.|+.+++-.
T Consensus       168 ----~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          168 ----LTSRIARIDPASGKVV  183 (243)
T ss_dssp             ----TTTEEEEECTTTCBEE
T ss_pred             ----CCCeEEEEECCCCCEE
Confidence                2478999999998743

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.96  E-value=0.0066  Score=55.17  Aligned_cols=205  Identities=14%  Similarity=-0.015  Sum_probs=120.4

Q ss_pred             eeeEEEC-CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEE
Q 012184           56 HCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        56 ~~~~~~~-~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      +.++..+ +.||+..|...    .+.+.++|+.|++=..-.   +++....+.+++..+++||+..-      ..+.+++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVW------LKNIGFI   90 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence            5566555 79999877432    245999999999865543   23444556677778899999843      3567999


Q ss_pred             EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCC-cceEEE
Q 012184          135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR-AGHAGI  212 (469)
Q Consensus       135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r-~~~~~~  212 (469)
                      ||+.+.+-..--+.| .|   .+.+++. +++++|+.-|      .+.++.+|+.+.+-.. +.+ +..+.+. ....+.
T Consensus        91 iD~~t~~v~~~i~~g-~~---~g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele  158 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQ-MK---DGWGLAT-DGKILYGSDG------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELE  158 (266)
T ss_dssp             EETTTTEEEEEEECC-SS---SCCEEEE-CSSSEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEE
T ss_pred             EECCCCcEEEEEECC-CC---CeEEEEE-CCCEEEEECC------CCeEEEEECCCCcEEEEEEE-CCCCcccccceeEE
Confidence            999988654332223 12   2344444 3566888643      3789999998876433 332 2222221 122444


Q ss_pred             EECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCC-----CCCCCcceEEEEEcC-CcEEEEEeccCCCCCce
Q 012184          213 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP-----LASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNE  286 (469)
Q Consensus       213 ~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p-----~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~  286 (469)
                      ..++.+|+--.     ..+++.+.|+.+.+-...-.+++..+     .........-+..++ .+++||.|+..    +.
T Consensus       159 ~~dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~----~~  229 (266)
T 2iwa_A          159 YINGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW----PK  229 (266)
T ss_dssp             EETTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC----SE
T ss_pred             EECCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC----Ce
Confidence            55888886532     24689999998876433222211000     000111222333443 57899998754    45


Q ss_pred             EEEEECCC
Q 012184          287 VFVMRLKP  294 (469)
Q Consensus       287 ~~~~d~~~  294 (469)
                      ++..++..
T Consensus       230 v~~i~l~~  237 (266)
T 2iwa_A          230 LFEIKLHL  237 (266)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            77777644

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.85  E-value=0.0009  Score=60.44  Aligned_cols=189  Identities=10%  Similarity=-0.063  Sum_probs=114.6

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  135 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~  135 (469)
                      +.....++.||+..|..+.      +..+|+.|++=..-.    +|....+.+++..+++||+...      ..+.+++|
T Consensus        58 qGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~  121 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTW------TEGLLFTW  121 (268)
T ss_dssp             EEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEES------SSCEEEEE
T ss_pred             ceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEc------cCCEEEEE
Confidence            5666679999999886432      889999998743322    2334456678888899999854      25569999


Q ss_pred             ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCCcc-eEEEE
Q 012184          136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG-HAGIT  213 (469)
Q Consensus       136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~-~~~~~  213 (469)
                      |+.+.+-..--+     .+..+.+++.. ++.||+.-|      .+.++.+|+.+.+-.. +.+. ..+.+... -.+..
T Consensus       122 D~~Tl~~~~ti~-----~~~eGwGLt~D-g~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~  188 (268)
T 3nok_A          122 SGMPPQRERTTR-----YSGEGWGLCYW-NGKLVRSDG------GTMLTFHEPDGFALVGAVQVK-LRGQPVELINELEC  188 (268)
T ss_dssp             ETTTTEEEEEEE-----CSSCCCCEEEE-TTEEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEE
T ss_pred             ECCcCcEEEEEe-----CCCceeEEecC-CCEEEEECC------CCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEE
Confidence            999987654322     22345666655 667999754      3689999999876443 3221 22222211 23455


Q ss_pred             ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCC---CC--CCCCCcceEEEEEcC-CcEEEEEec
Q 012184          214 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR---NP--LASEGLSVCSAIIEG-EHHLVAFGG  278 (469)
Q Consensus       214 ~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~---~p--~~r~~~s~~~~~~~~-~~~l~v~GG  278 (469)
                      .++.||+--     ...+++.+.|+.+.+-...-.+.+.   .+  .......+--+..++ .+.|||.|-
T Consensus       189 ~dG~lyanv-----w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          189 ANGVIYANI-----WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ETTEEEEEE-----TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             eCCEEEEEE-----CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            688888532     1246899999998765433222210   00  011122333444554 678888774

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.82  E-value=0.0023  Score=57.67  Aligned_cols=168  Identities=11%  Similarity=-0.041  Sum_probs=101.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+..+|+.+++=..--+.                +...++..++..+++||+...      ..+.+++||+.|.+-..--
T Consensus        66 ~v~~vD~~Tgkv~~~~~l----------------~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           66 SIRKVDIESGKTLQQIEL----------------GKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEECTTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCcEEEEEec----------------CCccceeEEEEeCCEEEEEEe------eCCEEEEEECccCcEEEEE
Confidence            788999999986555544                334567778889999999944      2345999999998754322


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc-eEEEEcCcEEEEEecC
Q 012184           96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-SAALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~~~~l~v~GG~  174 (469)
                           +.+-.+.+++.-++.||+.-|       .+.++.+|+.|.+-..--..+....+...- -+... +++||+--  
T Consensus       124 -----~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~--  188 (262)
T 3nol_A          124 -----NYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV--  188 (262)
T ss_dssp             -----ECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE--
T ss_pred             -----ECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE--
Confidence                 112266677766667887533       456999999987644322111111221111 13334 77788632  


Q ss_pred             CCCcccCcEEEEECCCCceEeeeecCCC--------CCCCcceEEEEE--CCEEEEEec
Q 012184          175 SHSIFFNDLHVLDLQTNEWSQPEIKGDL--------VTGRAGHAGITI--DENWYIVGG  223 (469)
Q Consensus       175 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~--------p~~r~~~~~~~~--~~~l~v~GG  223 (469)
                         -..+.|.+.|+.+++-...-..+.+        +..-....++..  .+.+||.|-
T Consensus       189 ---w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          189 ---WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ---TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ---ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence               1247899999999875432211111        111122345554  367888765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.79  E-value=0.0049  Score=60.06  Aligned_cols=226  Identities=13%  Similarity=0.068  Sum_probs=118.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .++.+|+.++.+..+.....                .....+++.. ++.+|+.++...      .+..+|+.++.....
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~s~~~~~~~~~~~~~------~i~~~d~~~g~~~~~  159 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKT----------------GFQPKSVRFIDNTRLAIPLLEDE------GMDVLDINSGQTVRL  159 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEEC----------------SSCBCCCEESSSSEEEEEBTTSS------SEEEEETTTCCEEEE
T ss_pred             EEEEECCCCCcceEEEEEcC----------------CCCceEEEEeCCCeEEEEeCCCC------eEEEEECCCCeEeee
Confidence            57888887776666655421                1111222222 778888776432      399999999887654


Q ss_pred             ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEE
Q 012184           95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVF  171 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~  171 (469)
                      ...+..........++.+  ++.+|+.|+.+      ..+.+||+.+.+....-..    ....-.+++... ++.+|+.
T Consensus       160 ~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~  229 (433)
T 3bws_A          160 SPPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCS  229 (433)
T ss_dssp             CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEE
T ss_pred             cCcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEE
Confidence            321111111122223334  56788777643      4589999988765433211    111112333333 3456666


Q ss_pred             ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCC---CcceEEEEECCCCcEEEec
Q 012184          172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNN---GCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~---~~~d~~~~d~~~~~W~~~~  247 (469)
                      ++.+     +.+++||+.+.+.....     +.......++.. ++..+++++.....   .-..+.+||+.+..-....
T Consensus       230 ~~~~-----~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~  299 (433)
T 3bws_A          230 NWIS-----EDISVIDRKTKLEIRKT-----DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI  299 (433)
T ss_dssp             ETTT-----TEEEEEETTTTEEEEEC-----CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred             ecCC-----CcEEEEECCCCcEEEEe-----cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence            5433     46999999887654322     111122233333 34455554432211   1346889999877544332


Q ss_pred             cCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          248 SVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       248 ~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      ..+.         ....+...+ +..+|+.++.++    .+.+||+.+..
T Consensus       300 ~~~~---------~~~~~~~~~~g~~l~~~~~~~~----~v~v~d~~~~~  336 (433)
T 3bws_A          300 GPPG---------NKRHIVSGNTENKIYVSDMCCS----KIEVYDLKEKK  336 (433)
T ss_dssp             EEEE---------CEEEEEECSSTTEEEEEETTTT----EEEEEETTTTE
T ss_pred             cCCC---------CcceEEECCCCCEEEEEecCCC----EEEEEECCCCc
Confidence            1111         111223344 347877766543    58888887543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.76  E-value=0.037  Score=54.16  Aligned_cols=198  Identities=15%  Similarity=0.176  Sum_probs=109.1

Q ss_pred             eEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184           58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++..++..++.|+.++      .+..||+.+..-...-     ........++.+++..++.|+.++      .+.+||+
T Consensus       244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~  306 (445)
T 2ovr_B          244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDV  306 (445)
T ss_dssp             EEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEET
T ss_pred             EEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEEC
Confidence            3444667777776432      2888898877543322     111122333444776677776543      4899999


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  217 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  217 (469)
                      .+.+-...-. +    ...........++ +++.|+.+     ..+.+||+.+.+-...- .+. .........+.+++.
T Consensus       307 ~~~~~~~~~~-~----~~~~v~~~~~~~~-~l~~~~~d-----g~i~vwd~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~  373 (445)
T 2ovr_B          307 ETGNCIHTLT-G----HQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL-QGP-NKHQSAVTCLQFNKN  373 (445)
T ss_dssp             TTCCEEEEEC-C----CCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-CST-TSCSSCEEEEEECSS
T ss_pred             CCCCEEEEEc-C----CcccEEEEEEeCC-EEEEEeCC-----CeEEEEECCCCcEEEEE-ccC-CCCCCCEEEEEECCC
Confidence            8876433221 1    1111223334354 56666644     45889998776533221 111 111222233445677


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEec-cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILT-SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~-~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      +++.|+.+     ..+.+||+.+......- .....    .....+..+...+++.++++|+.++.....+++||.+.
T Consensus       374 ~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          374 FVITSSDD-----GTVKLWDLKTGEFIRNLVTLESG----GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEEETT-----SEEEEEETTTCCEEEEEEECTTG----GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEeCC-----CeEEEEECCCCceeeeeeccccC----CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            77777743     36889999887654321 11100    01123344455667788899998887667788888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.68  E-value=0.028  Score=53.72  Aligned_cols=170  Identities=10%  Similarity=0.056  Sum_probs=94.6

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.||+.+++  |+.......              ...+...+.++.++.||+. ..      ...++.||+.+++  |
T Consensus       154 ~l~~~d~~tG~~~W~~~~~~~~--------------~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w  212 (376)
T 3q7m_A          154 QLQALNEADGAVKWTVNLDMPS--------------LSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIW  212 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC-------------------CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCc--------------eeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEE
Confidence            57888887765  765433210              1122233445557777663 21      1248999998775  7


Q ss_pred             EEeecCCCCCCCC--------cceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEE
Q 012184           92 GVMETSGKVPVAR--------GGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAA  161 (469)
Q Consensus        92 ~~~~~~g~~p~~r--------~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~  161 (469)
                      ..-.   ..|...        .....+..++.+|+.+.       ...++.||+.+++  |....     +.    ....
T Consensus       213 ~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~-----~~----~~~~  273 (376)
T 3q7m_A          213 QQRI---SQATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKREL-----GS----VNDF  273 (376)
T ss_dssp             EEEC---CC-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECC-----CC----EEEE
T ss_pred             EEec---ccCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccC-----CC----CCCc
Confidence            6543   111111        22333456778887531       2358999998774  65431     11    2223


Q ss_pred             EEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184          162 LHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       162 ~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      .+.++.+|+...      ...+++||+.+++  |....     ...+...+.+..++.+|+...      ...++.||+.
T Consensus       274 ~~~~~~l~~~~~------~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~  336 (376)
T 3q7m_A          274 IVDGNRIYLVDQ------NDRVMALTIDGGVTLWTQSD-----LLHRLLTSPVLYNGNLVVGDS------EGYLHWINVE  336 (376)
T ss_dssp             EEETTEEEEEET------TCCEEEEETTTCCEEEEECT-----TTTSCCCCCEEETTEEEEECT------TSEEEEEETT
T ss_pred             eEECCEEEEEcC------CCeEEEEECCCCcEEEeecc-----cCCCcccCCEEECCEEEEEeC------CCeEEEEECC
Confidence            334777888653      2469999998776  76521     122233344556788777632      2368999988


Q ss_pred             CCc
Q 012184          240 KLA  242 (469)
Q Consensus       240 ~~~  242 (469)
                      +.+
T Consensus       337 tG~  339 (376)
T 3q7m_A          337 DGR  339 (376)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.67  E-value=0.017  Score=52.51  Aligned_cols=181  Identities=9%  Similarity=-0.106  Sum_probs=106.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+..+|+.+++=..--+.                +....+..++..+++||+..-      ..+.+++||+.+.+=..--
T Consensus        45 ~v~~iD~~tg~v~~~i~l----------------~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           45 SVRQVALQTGKVENIHKM----------------DDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEEETTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEET------TCSEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEec----------------CCCcceEEEEEeCCEEEEEEe------cCCEEEEEECCCCcEEEEE
Confidence            789999999885444333                233456677888999999943      3345999999988643322


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC-ceEEEEcCcEEEEEecC
Q 012184           96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~-~~~~~~~~~~l~v~GG~  174 (469)
                      +.| .   ..+.+++.-++++|+.-|       .+.++.+|+.+.+-..--..|..+.|... ..+... ++++|+--. 
T Consensus       103 ~~g-~---~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~-  169 (266)
T 2iwa_A          103 THQ-M---KDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW-  169 (266)
T ss_dssp             ECC-S---SSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-
T ss_pred             ECC-C---CCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC-
Confidence            222 1   234555555667887632       56799999999775443322322223221 233334 678886432 


Q ss_pred             CCCcccCcEEEEECCCCceEe-eeecCC--------CCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCC
Q 012184          175 SHSIFFNDLHVLDLQTNEWSQ-PEIKGD--------LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       175 ~~~~~~~~i~~~d~~~~~W~~-~~~~~~--------~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                          ..+.|.+.|+.+++-.. +...+.        .+..-....++..  ++.+||.|+.     .+.++..++..
T Consensus       170 ----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~-----~~~v~~i~l~~  237 (266)
T 2iwa_A          170 ----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL-----WPKLFEIKLHL  237 (266)
T ss_dssp             ----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT-----CSEEEEEEEEE
T ss_pred             ----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC-----CCeEEEEEEec
Confidence                24789999999886432 211110        0111122344544  3578888874     34566666543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.011  Score=56.07  Aligned_cols=233  Identities=11%  Similarity=0.072  Sum_probs=116.4

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEEC----CEEEEEccccCCCCCcceEEEEECCCCeE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG----TKLLILGGHYKKSSDSMIVRFIDLETNLC   91 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~----~~iy~~GG~~~~~~~~~~~~~~d~~t~~W   91 (469)
                      .+..||.....+..+....                .......++.+.    +.+++.|+.++      .+..||+.++.|
T Consensus        34 ~i~iw~~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~   91 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLT----------------GHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRW   91 (379)
T ss_dssp             CEEEEEEETTEEEEEEEEC----------------CCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEETTEE
T ss_pred             cEEEEecCCCcceeeeEec----------------CCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEcCCCce
Confidence            6788888877776666542                112223333332    56777776543      288899999988


Q ss_pred             EEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEECCCCeE-EEeeeCCCCCCCCCCceEEEEc--
Q 012184           92 GVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQTPPAPRYDHSAALHA--  164 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~--  164 (469)
                      ..+...   ........++.+.    +.+++.|+.+      ..+.+||+.+... ......+   ....-.++....  
T Consensus        92 ~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           92 SQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC---CTTCEEEEEECCCC
T ss_pred             eEeeee---cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC---CCCceEEEEEcCcc
Confidence            776632   2222223333332    4566676643      3488888876632 1111101   011111222222  


Q ss_pred             -----------CcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEE-C---CEEEEEecCCCC
Q 012184          165 -----------NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-D---ENWYIVGGGDNN  227 (469)
Q Consensus       165 -----------~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~---~~l~v~GG~~~~  227 (469)
                                 ++.+++.|+.++     .+.+||+.+..  +..+.....  ....-.+++.. +   +.+++.|+.++ 
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg-  231 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR-  231 (379)
T ss_dssp             ----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTS-
T ss_pred             ccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCC-
Confidence                       355777776543     57888876543  444332111  11111233333 3   57777777543 


Q ss_pred             CCcceEEEEECCCCc--EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC-CCCCCCcccc
Q 012184          228 NGCQETIVLNMTKLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK-PRDIPRPKIF  303 (469)
Q Consensus       228 ~~~~d~~~~d~~~~~--W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~-~~~w~~~~~~  303 (469)
                          .+.+||+.+..  +..... ..    ......+..+...+++.++++|+.++.    +.+|++. ...|.....+
T Consensus       232 ----~i~iwd~~~~~~~~~~~~~-~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~----i~iw~~~~~~~~~~~~~~  297 (379)
T 3jrp_A          232 ----TCIIWTQDNEQGPWKKTLL-KE----EKFPDVLWRASWSLSGNVLALSGGDNK----VTLWKENLEGKWEPAGEV  297 (379)
T ss_dssp             ----CEEEEEESSTTSCCEEEES-SS----SCCSSCEEEEEECSSSCCEEEEESSSS----EEEEEEEETTEEEEEEEE
T ss_pred             ----EEEEEeCCCCCccceeeee-cc----ccCCCcEEEEEEcCCCCEEEEecCCCc----EEEEeCCCCCccccccce
Confidence                46777776642  221111 10    001123344445556667777776553    6666665 3455544443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.57  E-value=0.017  Score=55.25  Aligned_cols=214  Identities=16%  Similarity=0.101  Sum_probs=113.4

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+.++|+.+++-...-...                  ..-++++..  +..||+.|+..      ..+.++|+.+++...
T Consensus        13 ~v~v~d~~~~~~~~~~~~~------------------~~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~   68 (391)
T 1l0q_A           13 NISVIDVTSNKVTATIPVG------------------SNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIA   68 (391)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCeEEEEeecC------------------CCcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEE
Confidence            7889999887654433221                  111223322  45677776543      249999999988655


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIV  170 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v  170 (469)
                      ....   +.  .-..++..  +..||+.|..      .+.+++||+.+++.......+     .....++...+ +.+|+
T Consensus        69 ~~~~---~~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           69 TVPA---GS--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG-----KSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             EEEC---SS--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEE
T ss_pred             EEEC---CC--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCC-----CCcceEEECCCCCEEEE
Confidence            4422   11  11222222  3356665432      245999999998765543221     11233333333 45767


Q ss_pred             EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184          171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  248 (469)
                      .++.+     +.++++|+.+.+.......+     .....++..  +..+|+.++.+     ..+.+||+.+........
T Consensus       133 ~~~~~-----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~  197 (391)
T 1l0q_A          133 TNNGD-----KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVK  197 (391)
T ss_dssp             EETTT-----TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEE
T ss_pred             EeCCC-----CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEe
Confidence            66533     47999999888765433211     112233333  23566665532     368999998876543322


Q ss_pred             CCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECCCC
Q 012184          249 VKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       249 ~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      ..         .....+...++ ..|++.+. + .....+++||+.+.
T Consensus       198 ~~---------~~~~~~~~~~~g~~l~~~~~-~-~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          198 VE---------AAPSGIAVNPEGTKAYVTNV-D-KYFNTVSMIDTGTN  234 (391)
T ss_dssp             CS---------SEEEEEEECTTSSEEEEEEE-C-SSCCEEEEEETTTT
T ss_pred             cC---------CCccceEECCCCCEEEEEec-C-cCCCcEEEEECCCC
Confidence            11         11223334443 45555442 1 12346888888654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.56  E-value=0.016  Score=56.42  Aligned_cols=228  Identities=9%  Similarity=-0.057  Sum_probs=113.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..||+.+++..........             .........+.+  ++.+|+.|+.+      ..+.+||+.+++...
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKY-------------KKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKA  205 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHH-------------HTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCeEeeecCcccc-------------cccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEE
Confidence            588899988776543332110             011111222333  77888887643      248999998876543


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF  171 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~  171 (469)
                      ...   .. ...-..++..  +..+|+.++.+      +.+.+||+.+.+......     ....-..++...++..+++
T Consensus       206 ~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          206 TVD---LT-GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             EEE---CS-SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEE
T ss_pred             EEc---CC-CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEE
Confidence            321   11 1111222222  34576665432      359999999887654321     1111223333334434444


Q ss_pred             ecCCCCc---ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184          172 GGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       172 GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~  246 (469)
                      ++.....   .-..+++||+.+.+-......   +.  ....++..  ++.+|+.++.+     ..+.+||+.+..-...
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred             EECCCCccccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEE
Confidence            4432211   124799999987764432210   11  11122222  23577776532     3688999987654332


Q ss_pred             ccCCCCCCCCCCCcceEEEEEcCCc-EEEEEeccCCC----------CCceEEEEECCCCC
Q 012184          247 TSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGK----------YNNEVFVMRLKPRD  296 (469)
Q Consensus       247 ~~~~~~~p~~r~~~s~~~~~~~~~~-~l~v~GG~~~~----------~~~~~~~~d~~~~~  296 (469)
                      -  +..       .....+...+++ .+++.+...+.          ....+++||+.+..
T Consensus       341 ~--~~~-------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          341 I--PVF-------DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             E--ECS-------SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             e--cCC-------CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            1  111       112233444444 45544432211          12479999987654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.52  E-value=0.067  Score=51.00  Aligned_cols=217  Identities=11%  Similarity=0.141  Sum_probs=113.2

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .+..||+.+++  |+........      .   ..........+.++.++.||+....       ..++.||..+++  |
T Consensus        64 ~v~a~d~~tG~~~W~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           64 LVKALNADDGKEIWSVSLAEKDG------W---FSKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAW  127 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC---------C---CSCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEE
T ss_pred             eEEEEEccCCceeeeecCccccc------c---ccccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEE
Confidence            68999998764  7654332100      0   0000122334455668888886431       349999998876  7


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLI  169 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~  169 (469)
                      +.-... .     ...+.+..++.+|+..+       ...++.||+.+++  |...... +....+...+.+.. ++.+|
T Consensus       128 ~~~~~~-~-----~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~-~~~v~  192 (376)
T 3q7m_A          128 QTKVAG-E-----ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDM-PSLSLRGESAPTTA-FGAAV  192 (376)
T ss_dssp             EEECSS-C-----CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC------CCCCCCEEE-TTEEE
T ss_pred             EEeCCC-c-----eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCC-CceeecCCCCcEEE-CCEEE
Confidence            654311 1     12223445777776432       3359999998875  8764321 11111112233333 66566


Q ss_pred             EEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCC--------cceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184          170 VFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGR--------AGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       170 v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r--------~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      + |..+     ..++.||+.+++  |....   ..|...        .....+..++.+|+.+.      ...++.||+.
T Consensus       193 ~-g~~~-----g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~~~d~~  257 (376)
T 3q7m_A          193 V-GGDN-----GRVSAVLMEQGQMIWQQRI---SQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NGNLTALDLR  257 (376)
T ss_dssp             E-CCTT-----TEEEEEETTTCCEEEEEEC---CC-----------CCCCCCEEETTEEEEECT------TSCEEEEETT
T ss_pred             E-EcCC-----CEEEEEECCCCcEEEEEec---ccCCCCcccccccccCCCcEEECCEEEEEec------CcEEEEEECC
Confidence            5 3321     468999998765  77532   111111        11233445777777542      2368899987


Q ss_pred             CC--cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          240 KL--AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       240 ~~--~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      +.  .|..-.  ..        ..  ...+. ++.+|+...     ...++.||+.+..
T Consensus       258 tG~~~w~~~~--~~--------~~--~~~~~-~~~l~~~~~-----~g~l~~~d~~tG~  298 (376)
T 3q7m_A          258 SGQIMWKREL--GS--------VN--DFIVD-GNRIYLVDQ-----NDRVMALTIDGGV  298 (376)
T ss_dssp             TCCEEEEECC--CC--------EE--EEEEE-TTEEEEEET-----TCCEEEEETTTCC
T ss_pred             CCcEEeeccC--CC--------CC--CceEE-CCEEEEEcC-----CCeEEEEECCCCc
Confidence            65  466421  10        11  11222 567777653     2248888887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.49  E-value=0.0076  Score=54.39  Aligned_cols=138  Identities=11%  Similarity=-0.018  Sum_probs=88.7

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+..+|+.+++=..-- .                +...++..++..+++||+...      ..+.+++||+.|.+-..--
T Consensus        76 ~v~~iD~~Tgkv~~~~-l----------------~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           76 TLRQLSLESAQPVWME-R----------------LGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEECCSSCSSCSEEE-E----------------CTTCCEEEEEECSSCEEEEES------SSCEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCcEEeEE-C----------------CCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCcCcEEEEE
Confidence            4778899888754444 3                334566778888999999844      2345999999998754332


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce-EEEEcCcEEEEEecC
Q 012184           96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS-AALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~-~~~~~~~~l~v~GG~  174 (469)
                           +.+..+.+++.-++.||+.-|       .+.++.+|+.|.+-..--..+..+.+...-. +... +++||+-- +
T Consensus       133 -----~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv-w  198 (268)
T 3nok_A          133 -----RYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI-W  198 (268)
T ss_dssp             -----ECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-T
T ss_pred             -----eCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE-C
Confidence                 112346777777888998743       5579999999976543322222222322222 2333 77788522 1


Q ss_pred             CCCcccCcEEEEECCCCceE
Q 012184          175 SHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       175 ~~~~~~~~i~~~d~~~~~W~  194 (469)
                          ..+.|.+.|+.+++-.
T Consensus       199 ----~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          199 ----HSSDVLEIDPATGTVV  214 (268)
T ss_dssp             ----TCSEEEEECTTTCBEE
T ss_pred             ----CCCeEEEEeCCCCcEE
Confidence                2478999999998743

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.49  E-value=0.019  Score=54.96  Aligned_cols=216  Identities=12%  Similarity=0.029  Sum_probs=113.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..||+.+++....-..+                .  .-.+++..  +..||+.|...      ..+++||+.++....
T Consensus        55 ~i~v~d~~~~~~~~~~~~~----------------~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPAG----------------S--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAG  110 (391)
T ss_dssp             EEEEEETTTTEEEEEEECS----------------S--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEEEEECC----------------C--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEE
Confidence            7888999887654433321                1  12222222  45566665421      349999999987655


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIV  170 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v  170 (469)
                      ....+     ..-.+++..  +..||+.++.      .+.+++||+.+.+.......+..     -..++...+ +.+|+
T Consensus       111 ~~~~~-----~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          111 TVKTG-----KSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVGRS-----PKGIAVTPDGTKVYV  174 (391)
T ss_dssp             EEECS-----SSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECCSS-----EEEEEECTTSSEEEE
T ss_pred             EEeCC-----CCcceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEecCCC-----cceEEECCCCCEEEE
Confidence            44211     112233332  2357676643      34699999999887655432211     123333333 46667


Q ss_pred             EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccC
Q 012184          171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  249 (469)
Q Consensus       171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~  249 (469)
                      .++.+     +.++++|+.+........     .......++.. ++..+++++...  ....+.+||+.+..-...  +
T Consensus       175 ~~~~~-----~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~--~~~~v~~~d~~~~~~~~~--~  240 (391)
T 1l0q_A          175 ANFDS-----MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDK--YFNTVSMIDTGTNKITAR--I  240 (391)
T ss_dssp             EETTT-----TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEECS--SCCEEEEEETTTTEEEEE--E
T ss_pred             EeCCC-----CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEecCc--CCCcEEEEECCCCeEEEE--E
Confidence            66543     469999998876544321     11112223322 344444443211  134789999987654322  2


Q ss_pred             CCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          250 KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       250 ~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      +...       ....+...+ +..|++.++.++    .+.+||+.+..
T Consensus       241 ~~~~-------~~~~~~~s~dg~~l~~s~~~d~----~v~v~d~~~~~  277 (391)
T 1l0q_A          241 PVGP-------DPAGIAVTPDGKKVYVALSFXN----TVSVIDTATNT  277 (391)
T ss_dssp             ECCS-------SEEEEEECTTSSEEEEEETTTT----EEEEEETTTTE
T ss_pred             ecCC-------CccEEEEccCCCEEEEEcCCCC----EEEEEECCCCc
Confidence            1111       122333444 446777766543    58888886543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.49  E-value=0.062  Score=49.54  Aligned_cols=150  Identities=16%  Similarity=0.169  Sum_probs=77.0

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+..||+.++.-...-     +........+.+  ++.+++.|+.+.      .+.+||+.+
T Consensus       118 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~  180 (312)
T 4ery_A          118 QSNLIVSGSFDE------SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTAS  180 (312)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Confidence            455666766443      2889999887643322     111112222333  456677776543      488999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE-ECCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l  218 (469)
                      .+.........   ......+....++..++.|+.+     +.+.+||+.+..-.... .+............. .++.+
T Consensus       181 ~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          181 GQCLKTLIDDD---NPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             CCEEEEECCSS---CCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSCE
T ss_pred             CceeeEEeccC---CCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCcE
Confidence            76543321111   1111122222355566666644     46889999877543321 111111112222222 24566


Q ss_pred             EEEecCCCCCCcceEEEEECCCCc
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      ++.|+.+     ..+.+||+.+..
T Consensus       252 l~sg~~d-----g~i~vwd~~~~~  270 (312)
T 4ery_A          252 IVSGSED-----NLVYIWNLQTKE  270 (312)
T ss_dssp             EEECCTT-----SCEEEEETTTCC
T ss_pred             EEEECCC-----CEEEEEECCCch
Confidence            7776643     257889987765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.46  E-value=0.02  Score=53.91  Aligned_cols=237  Identities=12%  Similarity=0.045  Sum_probs=109.5

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .++.+|+.++++..+......               ......+..-+++||+.+...    ....+++||+.++.+..+.
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~---------------~~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~   79 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAAT---------------QNPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLN   79 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC---------------SCCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeecc---------------CCcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEee
Confidence            477888888988876554211               111112222367777665321    1245899999888887765


Q ss_pred             cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECC-CCeEEEee---eCCCCCCCCC----CceEEEEcCc
Q 012184           96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVE---VTQTPPAPRY----DHSAALHANR  166 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~-t~~W~~~~---~~g~~p~~r~----~~~~~~~~~~  166 (469)
                      ... .......+.+..-++ .||+.+. .     .+.+.+|++. +.....+.   ..+..|.+|.    .+.++...++
T Consensus        80 ~~~-~~~~~p~~~a~spdg~~l~~~~~-~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg  152 (347)
T 3hfq_A           80 TVV-APGTPPAYVAVDEARQLVYSANY-H-----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN  152 (347)
T ss_dssp             EEE-EESCCCSEEEEETTTTEEEEEET-T-----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS
T ss_pred             eee-cCCCCCEEEEECCCCCEEEEEeC-C-----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC
Confidence            310 011111122222234 4665542 1     2457788874 33333332   1222222221    2233443455


Q ss_pred             EEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCcceEEEEE--CCCC
Q 012184          167 YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLN--MTKL  241 (469)
Q Consensus       167 ~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d--~~~~  241 (469)
                      ++|+.+..+     +.+++|++. ++....+... ..+.......++.. ++ .+|+.+..+     +.+.+|+  ..+.
T Consensus       153 ~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g  221 (347)
T 3hfq_A          153 RLAVIDLGS-----DKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTG  221 (347)
T ss_dssp             CEEEEETTT-----TEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTT
T ss_pred             cEEEEeCCC-----CEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC
Confidence            666654322     468899987 5555543211 11111111123322 34 467665422     2444444  4456


Q ss_pred             cEEEeccCCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECC
Q 012184          242 AWSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       242 ~W~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      .+..+..................+.+.++ .+||+.+..+    +.+.+|++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----~~v~v~~~~  270 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----NTLAVFAVT  270 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----TEEEEEEEC
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----CEEEEEEEC
Confidence            66544332211100001122333445554 4576665432    357777775

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.45  E-value=0.062  Score=49.69  Aligned_cols=211  Identities=15%  Similarity=0.031  Sum_probs=108.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..||+.+.+.........                .......+.+  ++..++.|+.++      .+..||+.++....
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~~  177 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTS----------------SAPACYALAISPDSKVCFSCCSDG------NIAVWDLHNQTLVR  177 (337)
T ss_dssp             EEEEEECCCC--EEEEEEEC----------------SSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred             cEEEEECCCCCcceeeeccc----------------CCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCceee
Confidence            67888888877544444321                1111222222  555666666432      28899998886544


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF  171 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~  171 (469)
                      ..   ....  .....+.+  ++..++.|+.+      ..+.+||+.+..-.....   .  ...-.++....++.++++
T Consensus       178 ~~---~~~~--~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~--~~~v~~~~~s~~~~~l~~  241 (337)
T 1gxr_A          178 QF---QGHT--DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---F--TSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             EE---CCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---C--SSCEEEEEECTTSSEEEE
T ss_pred             ee---eccc--CceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---C--CCceEEEEECCCCCEEEE
Confidence            33   1111  12222333  45566666533      358999998876544321   1  111223333345556777


Q ss_pred             ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC
Q 012184          172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  250 (469)
Q Consensus       172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~  250 (469)
                      |+.+     ..+.+||+.+..-..+.   .  ....-.+++.. ++.+++.|+.+     ..+.+||+.+..-...... 
T Consensus       242 ~~~~-----~~i~~~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~~-  305 (337)
T 1gxr_A          242 GMES-----SNVEVLHVNKPDKYQLH---L--HESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSKE-  305 (337)
T ss_dssp             EETT-----SCEEEEETTSSCEEEEC---C--CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEEC-
T ss_pred             EcCC-----CcEEEEECCCCCeEEEc---C--CccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEecC-
Confidence            7643     45889998876533321   1  11112223332 45666776642     3588899887664422111 


Q ss_pred             CCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                              ......+...+++.+++.|+.++.    +.+|++
T Consensus       306 --------~~~v~~~~~s~~~~~l~~~~~dg~----i~iw~~  335 (337)
T 1gxr_A          306 --------SSSVLSCDISVDDKYIVTGSGDKK----ATVYEV  335 (337)
T ss_dssp             --------SSCEEEEEECTTSCEEEEEETTSC----EEEEEE
T ss_pred             --------CCcEEEEEECCCCCEEEEecCCCe----EEEEEE
Confidence                    112333444455567777776553    555553

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.44  E-value=0.028  Score=54.30  Aligned_cols=198  Identities=12%  Similarity=0.100  Sum_probs=97.9

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEE
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      .++.+++.+++.|+.+      ..+..||+.+..-......+    ......++.+  ++.+++.|+.+      +.+.+
T Consensus       180 ~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d------~~v~i  243 (401)
T 4aez_A          180 GCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG----HSSEVCGLAWRSDGLQLASGGND------NVVQI  243 (401)
T ss_dssp             EEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETT------SCEEE
T ss_pred             EEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC----CCCCeeEEEEcCCCCEEEEEeCC------CeEEE
Confidence            3444466677777644      23888998743322111111    1112222333  45677777654      34899


Q ss_pred             EECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE
Q 012184          135 LDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT  213 (469)
Q Consensus       135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~  213 (469)
                      ||+.+..-.....  .  ....-.++.... +..+++.||...   -..+.+||+.+..-.....     ....-.+++.
T Consensus       244 wd~~~~~~~~~~~--~--~~~~v~~~~~~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~  311 (401)
T 4aez_A          244 WDARSSIPKFTKT--N--HNAAVKAVAWCPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVD-----AGSQVTSLIW  311 (401)
T ss_dssp             EETTCSSEEEEEC--C--CSSCCCEEEECTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEE-----CSSCEEEEEE
T ss_pred             ccCCCCCccEEec--C--CcceEEEEEECCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEe-----CCCcEEEEEE
Confidence            9998765433221  1  111122333322 345777765221   1468999988766443221     1111122222


Q ss_pred             E-CC-EEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          214 I-DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       214 ~-~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      . ++ .+++.+|...    ..+.+||+.+.....+..+....      ..+..+...+++.+++.||.++    .+.+||
T Consensus       312 s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~~h~------~~v~~~~~s~dg~~l~s~~~dg----~i~iw~  377 (401)
T 4aez_A          312 SPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIPAHD------TRVLYSALSPDGRILSTAASDE----NLKFWR  377 (401)
T ss_dssp             CSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEECCS------SCCCEEEECTTSSEEEEECTTS----EEEEEE
T ss_pred             CCCCCeEEEEeecCC----CcEEEEecCCccceeEEEecCCC------CCEEEEEECCCCCEEEEEeCCC----cEEEEE
Confidence            2 33 4444445322    36888888887666544332221      1122233444556677777654    588888


Q ss_pred             CCCCC
Q 012184          292 LKPRD  296 (469)
Q Consensus       292 ~~~~~  296 (469)
                      +.+..
T Consensus       378 ~~~~~  382 (401)
T 4aez_A          378 VYDGD  382 (401)
T ss_dssp             CCC--
T ss_pred             CCCCc
Confidence            86654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.40  E-value=0.086  Score=49.26  Aligned_cols=224  Identities=12%  Similarity=-0.035  Sum_probs=114.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .++.+|+.+++-...-..+.                 . .+.++..  ++.+|+.++..      +.++.||+.+++-..
T Consensus        70 ~v~~~d~~~~~~~~~~~~~~-----------------~-~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~  125 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHNDL-----------------K-PFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKG  125 (353)
T ss_dssp             EEEEECTTTCCEEEEEEESS-----------------C-CCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEE
T ss_pred             cEEEEcCCCCeEEEEEecCC-----------------C-cceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEE
Confidence            68889998876544333221                 1 2222222  45677776532      359999999887533


Q ss_pred             eecCCCCCC-----CCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee-CCCCCCCCCCceEEEEc-
Q 012184           94 METSGKVPV-----ARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV-TQTPPAPRYDHSAALHA-  164 (469)
Q Consensus        94 ~~~~g~~p~-----~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~-~g~~p~~r~~~~~~~~~-  164 (469)
                      ....+....     +..-+.++..  ++.+|+.+...     ...+++||+.+.+-..... .+.     ..+.++... 
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~d  195 (353)
T 3vgz_A          126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSE  195 (353)
T ss_dssp             EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETT
T ss_pred             EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCC-----ccceEEECCC
Confidence            322211111     0111223332  34677665221     3459999999887544332 111     112233333 


Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      ++++|+...      .+.+++||+.+.+-......+..........++..  ++.+|+....     .+.+++||+.+..
T Consensus       196 g~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~  264 (353)
T 3vgz_A          196 GKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGN  264 (353)
T ss_dssp             TTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCC
T ss_pred             CCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCc
Confidence            455666543      25788999988764432212111111222233333  3456665432     3579999998876


Q ss_pred             EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          243 WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       243 W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      .......+.  +     .. ..+..+ +.++|+.+..+    +.+.++|+.+...
T Consensus       265 ~~~~~~~~~--~-----~~-~~~s~d-g~~l~v~~~~~----~~v~~~d~~~~~~  306 (353)
T 3vgz_A          265 ILAKVAAPE--S-----LA-VLFNPA-RNEAYVTHRQA----GKVSVIDAKSYKV  306 (353)
T ss_dssp             EEEEEECSS--C-----CC-EEEETT-TTEEEEEETTT----TEEEEEETTTTEE
T ss_pred             EEEEEEcCC--C-----ce-EEECCC-CCEEEEEECCC----CeEEEEECCCCeE
Confidence            544322211  1     11 222222 45677766433    3688999876543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.39  E-value=0.026  Score=55.06  Aligned_cols=198  Identities=9%  Similarity=0.038  Sum_probs=104.4

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      +++.+++++....   ...++.+|+.+++...+.   ..+.   ...++.+  ++ .|++.+..+.    ...++++|+.
T Consensus       189 dg~~la~~s~~~~---~~~i~~~d~~tg~~~~l~---~~~~---~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~  255 (415)
T 2hqs_A          189 DGSKLAYVTFESG---RSALVIQTLANGAVRQVA---SFPR---HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLA  255 (415)
T ss_dssp             TSSEEEEEECTTS---SCEEEEEETTTCCEEEEE---CCSS---CEEEEEECTTSSEEEEEECTTS----SCEEEEEETT
T ss_pred             CCCEEEEEEecCC---CcEEEEEECCCCcEEEee---cCCC---cccCEEEcCCCCEEEEEEecCC----CceEEEEECC
Confidence            4555555554322   245999999999887665   2221   2223333  34 4554544322    4469999999


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  217 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  217 (469)
                      +.....+..   .  ...........++..+++++...  ....++++|+.+..-..+..     .......++.. +++
T Consensus       256 ~~~~~~l~~---~--~~~~~~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          256 SGQIRQVTD---G--RSNNTEPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGK  323 (415)
T ss_dssp             TCCEEECCC---C--SSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSS
T ss_pred             CCCEEeCcC---C--CCcccceEECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCC
Confidence            988765531   1  11112222223554455544321  12479999998876544321     11222222222 455


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      .+++++...  ....++++|+.+.....+....          ........+++..+++++.++. ...+|++|+.....
T Consensus       324 ~l~~~~~~~--g~~~i~~~d~~~~~~~~l~~~~----------~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          324 FMVMVSSNG--GQQHIAKQDLATGGVQVLSSTF----------LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDGRFK  390 (415)
T ss_dssp             EEEEEEECS--SCEEEEEEETTTCCEEECCCSS----------SCEEEEECTTSSEEEEEEEETT-EEEEEEEETTSCCE
T ss_pred             EEEEEECcC--CceEEEEEECCCCCEEEecCCC----------CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECCCCcE
Confidence            555554322  1357999999988876553211          1122333445556666654332 34799999875543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.37  E-value=0.056  Score=50.00  Aligned_cols=188  Identities=15%  Similarity=0.070  Sum_probs=98.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++..++.|+.+      ..+..||+.+.........   ........++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAEL---TSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEE---ECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeeec---ccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCC
Confidence            45566666543      2488999988875443311   111112222333  45566666643      3489999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      .+....-.  .  ....-.++....++..++.|+.+     ..+.+||+.+..-....   ..+  ....+++.. ++.+
T Consensus       173 ~~~~~~~~--~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~---~~~--~~v~~~~~s~~~~~  238 (337)
T 1gxr_A          173 QTLVRQFQ--G--HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQH---DFT--SQIFSLGYCPTGEW  238 (337)
T ss_dssp             TEEEEEEC--C--CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE---ECS--SCEEEEEECTTSSE
T ss_pred             Cceeeeee--c--ccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeee---cCC--CceEEEEECCCCCE
Confidence            87544321  1  11112233333355566666643     46899998876543321   111  112233332 4566


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      +++|+.+     ..+.+||+.+..-..+...         ...+..+...+++.+++.|+.++    .+.+||+.+..
T Consensus       239 l~~~~~~-----~~i~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg----~i~~~~~~~~~  298 (337)
T 1gxr_A          239 LAVGMES-----SNVEVLHVNKPDKYQLHLH---------ESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGA  298 (337)
T ss_dssp             EEEEETT-----SCEEEEETTSSCEEEECCC---------SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTCC
T ss_pred             EEEEcCC-----CcEEEEECCCCCeEEEcCC---------ccceeEEEECCCCCEEEEecCCC----cEEEEECCCCe
Confidence            7776643     3588999887654333211         11233444455556677777554    58888886654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.31  E-value=0.04  Score=53.78  Aligned_cols=190  Identities=15%  Similarity=0.149  Sum_probs=98.4

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  135 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~  135 (469)
                      ..++..++.+++.|+.++      .+.++|+.++.-...-     ........++.+.+.+++.|+.++      .+.+|
T Consensus       176 v~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg------~i~vw  238 (435)
T 1p22_A          176 VLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKDR------SIAVW  238 (435)
T ss_dssp             EEEEECCSSEEEEEETTS------CEEEEESSSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETTS------CEEEE
T ss_pred             EEEEEECCCEEEEEcCCC------eEEEEECCCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCCC------cEEEE
Confidence            344445777888877543      2889999888654332     111222334444555666776443      48889


Q ss_pred             ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC
Q 012184          136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID  215 (469)
Q Consensus       136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~  215 (469)
                      |+.+..-.....  ..........++.++++ .++.|+.+     ..+.+||+.+..-...-     ........++..+
T Consensus       239 d~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~  305 (435)
T 1p22_A          239 DMASPTDITLRR--VLVGHRAAVNVVDFDDK-YIVSASGD-----RTIKVWNTSTCEFVRTL-----NGHKRGIACLQYR  305 (435)
T ss_dssp             ECSSSSCCEEEE--EECCCSSCEEEEEEETT-EEEEEETT-----SEEEEEETTTCCEEEEE-----ECCSSCEEEEEEE
T ss_pred             eCCCCCCceeee--EecCCCCcEEEEEeCCC-EEEEEeCC-----CeEEEEECCcCcEEEEE-----cCCCCcEEEEEeC
Confidence            987654221100  00111112233334344 55666543     45889998876543321     1111122333346


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      +.+++.|+.+     ..+.+||+.+..-..  .+....      ..+..+..  ++.+++.|+.++    .+.+||+..
T Consensus       306 ~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~h~------~~v~~~~~--~~~~l~sg~~dg----~i~vwd~~~  365 (435)
T 1p22_A          306 DRLVVSGSSD-----NTIRLWDIECGACLR--VLEGHE------ELVRCIRF--DNKRIVSGAYDG----KIKVWDLVA  365 (435)
T ss_dssp             TTEEEEEETT-----SCEEEEETTTCCEEE--EECCCS------SCEEEEEC--CSSEEEEEETTS----CEEEEEHHH
T ss_pred             CCEEEEEeCC-----CeEEEEECCCCCEEE--EEeCCc------CcEEEEEe--cCCEEEEEeCCC----cEEEEECCC
Confidence            6777777743     358899988764322  222111      11222223  345677787665    377787643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.024  Score=60.30  Aligned_cols=224  Identities=11%  Similarity=0.006  Sum_probs=122.4

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .++.||+.++++..+....               .....-++++.. ++.|++.. .       .-+++||+.++.|..+
T Consensus       428 Gl~~~~~~~~~~~~~~~~~---------------~~~~~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEK---------------NELLDVRVFYEDKNKKIWIGT-H-------AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             EEEEECSSSCEEEECCSTT---------------TCCCCEEEEEECTTSEEEEEE-T-------TEEEEEESSSSSCCEE
T ss_pred             CEEEEcCCCCcEEEeccCC---------------CCCCeEEEEEECCCCCEEEEE-C-------CceEEEeCCCCeEEec
Confidence            6788898888887765421               112222333333 46666642 1       2299999999999887


Q ss_pred             ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184           95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  172 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G  172 (469)
                      ......+.......+...  ++.|++- ...      +-+++||+.+.++........+|.. .-.+++...++.|++..
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~------~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIG-TFG------GGVGIYTPDMQLVRKFNQYEGFCSN-TINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEE-ESS------SCEEEECTTCCEEEEECTTTTCSCS-CEEEEEECTTSCEEEEE
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEE-EcC------CCEEEEeCCCCeEEEccCCCCCCCC-eeEEEEECCCCCEEEEE
Confidence            632111111111112222  4567653 221      2389999999999887532222211 11233333356677743


Q ss_pred             cCCCCcccCcE-EEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC
Q 012184          173 GCSHSIFFNDL-HVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  250 (469)
Q Consensus       173 G~~~~~~~~~i-~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~  250 (469)
                      .       +-+ ++||+.+.++........+|.... .+++.. ++.|++.+.       +-+.+||+.+..+.......
T Consensus       557 ~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~d  621 (781)
T 3v9f_A          557 G-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSN  621 (781)
T ss_dssp             T-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGG
T ss_pred             C-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccC
Confidence            2       236 899999888877654333444333 344433 456776532       35889999999888765432


Q ss_pred             CCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      +.. .  ..+...++..+.++.|+ |||.++     +..|+++.
T Consensus       622 Gl~-~--~~f~~~~~~~~~~G~l~-~g~~~G-----l~~f~p~~  656 (781)
T 3v9f_A          622 NIP-Q--GSFISGCVTKDHNGLIY-FGSING-----LCFFNPDI  656 (781)
T ss_dssp             TCC-S--SCEEEEEEEECTTSCEE-EEETTE-----EEEECSCC
T ss_pred             Ccc-c--cccccCceEECCCCEEE-EECCCc-----eEEEChhh
Confidence            211 1  12222334444455655 566443     67777754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.29  E-value=0.089  Score=54.87  Aligned_cols=196  Identities=12%  Similarity=-0.024  Sum_probs=98.8

Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC-eEEEeeeCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAP  154 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~-~W~~~~~~g~~p~~  154 (469)
                      ...++++|+.++.-..+..   ..........+.+  +++.++++..+... ....++++|+.++ .+..+.........
T Consensus       234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeE
Confidence            4569999999988665542   1111122233333  44444444433221 2457999999998 77665421110000


Q ss_pred             CCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CC-EEEEEecCCCCCC
Q 012184          155 RYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNNG  229 (469)
Q Consensus       155 r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~  229 (469)
                      -....+....  ++.+++.+..++   ...+|.+|........+.. +    .........+  ++ .||+.+. .....
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-~----~~~v~~~~~~spdg~~l~~~~~-~~~~~  380 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-G----EWEVTNFAGFDPKGTRLYFEST-EASPL  380 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-S----SSCEEEEEEECTTSSEEEEEES-SSCTT
T ss_pred             CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-C----CeEEEeeeEEcCCCCEEEEEec-CCCCc
Confidence            0012223333  666655554332   3678888877666665531 1    1111121223  34 4555443 32222


Q ss_pred             cceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          230 CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       230 ~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      ...+|.+|+.+.....+...          .....+...+++..+++...+.....+++++|+.+..
T Consensus       381 ~~~l~~~d~~~~~~~~l~~~----------~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          381 ERHFYCIDIKGGKTKDLTPE----------SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CBEEEEEETTCCCCEESCCS----------SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             eEEEEEEEcCCCCceeccCC----------CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            45799999988775555311          1122334444445555554444445678888876553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.28  E-value=0.14  Score=50.00  Aligned_cols=190  Identities=17%  Similarity=0.197  Sum_probs=97.4

Q ss_pred             EEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECC
Q 012184           59 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        59 ~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      +..++..++.|+.+      ..+..||+.++.-...-.     .......++.+++..++.|+.+.      .+.+||+.
T Consensus       205 ~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~  267 (445)
T 2ovr_B          205 MHLHEKRVVSGSRD------ATLRVWDIETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPE  267 (445)
T ss_dssp             EEEETTEEEEEETT------SEEEEEESSSCCEEEEEE-----CCSSCEEEEEECSSCEEEEETTS------CEEEEEGG
T ss_pred             EEecCCEEEEEeCC------CEEEEEECCCCcEEEEEc-----CCcccEEEEEECCCEEEEEcCCC------EEEEEECC
Confidence            33344555665543      238888888776433221     11122234445777777776543      48889988


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  218 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  218 (469)
                      +..-...-.     ........+.+ ++..++.|+.+     +.+.+||+.+.+-...- .+    ..........++.+
T Consensus       268 ~~~~~~~~~-----~~~~~v~~~~~-~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~-~~----~~~~v~~~~~~~~~  331 (445)
T 2ovr_B          268 TETCLHTLQ-----GHTNRVYSLQF-DGIHVVSGSLD-----TSIRVWDVETGNCIHTL-TG----HQSLTSGMELKDNI  331 (445)
T ss_dssp             GTEEEEEEC-----CCSSCEEEEEE-CSSEEEEEETT-----SCEEEEETTTCCEEEEE-CC----CCSCEEEEEEETTE
T ss_pred             CCcEeEEec-----CCCCceEEEEE-CCCEEEEEeCC-----CeEEEEECCCCCEEEEE-cC----CcccEEEEEEeCCE
Confidence            776433221     11112233334 44466666654     45889998876543221 11    11112223345566


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      ++.|+.+     ..+.+||+.+..-..  .+.....   ....+..+..+  +.+++.|+.++    .+.+||+.+...
T Consensus       332 l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~---~~~~v~~~~~~--~~~l~s~~~dg----~v~iwd~~~~~~  394 (445)
T 2ovr_B          332 LVSGNAD-----STVKIWDIKTGQCLQ--TLQGPNK---HQSAVTCLQFN--KNFVITSSDDG----TVKLWDLKTGEF  394 (445)
T ss_dssp             EEEEETT-----SCEEEEETTTCCEEE--EECSTTS---CSSCEEEEEEC--SSEEEEEETTS----EEEEEETTTCCE
T ss_pred             EEEEeCC-----CeEEEEECCCCcEEE--EEccCCC---CCCCEEEEEEC--CCEEEEEeCCC----eEEEEECCCCce
Confidence            6777643     357889987655322  1111110   11122233333  35667777654    588899876643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.21  E-value=0.07  Score=50.25  Aligned_cols=233  Identities=11%  Similarity=0.056  Sum_probs=112.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+..||+.++.|..+......               ...-.+++.. ++.+++.|+.++      .+..||+.++.+...
T Consensus        31 ~v~i~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~   89 (372)
T 1k8k_C           31 EVHIYEKSGNKWVQVHELKEH---------------NGQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPT   89 (372)
T ss_dssp             EEEEEEEETTEEEEEEEEECC---------------SSCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEE
T ss_pred             EEEEEeCCCCcEEeeeeecCC---------------CCcccEEEEeCCCCEEEEEcCCC------eEEEEECCCCeeeee
Confidence            788999999987776665311               1111122222 566666766432      288899988887665


Q ss_pred             ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCCCCCceEEEEcCcEEEEE
Q 012184           95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLIVF  171 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~  171 (469)
                      ...   ........++.+  ++.+++.|+.+      ..+.+||+.+.. |...... ..+....-.++....++.+++.
T Consensus        90 ~~~---~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           90 LVI---LRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEC---CCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEE
T ss_pred             EEe---ecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEE
Confidence            421   111222233333  45566666643      236666665543 3222211 1111112223333335557777


Q ss_pred             ecCCCCcccCcEEEEECCCCc---------e-------EeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEE
Q 012184          172 GGCSHSIFFNDLHVLDLQTNE---------W-------SQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETI  234 (469)
Q Consensus       172 GG~~~~~~~~~i~~~d~~~~~---------W-------~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~  234 (469)
                      |+.+     ..+.+||+....         |       ..+....  .....-.+++.. ++.+++.|+.+     ..+.
T Consensus       160 ~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~  227 (372)
T 1k8k_C          160 GSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHD-----STVC  227 (372)
T ss_dssp             EETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETT-----TEEE
T ss_pred             EcCC-----CCEEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEeCC-----CEEE
Confidence            7654     457888864211         1       1111000  011111122222 44566666643     3588


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC--CCCCCccccC
Q 012184          235 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP--RDIPRPKIFQ  304 (469)
Q Consensus       235 ~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~--~~w~~~~~~~  304 (469)
                      +||+.+..-...  +....      ..+..+...+++.+++.| .++    .+.+|++..  ..|.....+.
T Consensus       228 i~d~~~~~~~~~--~~~~~------~~v~~~~~~~~~~~l~~~-~d~----~i~i~~~~~~~~~~~~~~~~~  286 (372)
T 1k8k_C          228 LADADKKMAVAT--LASET------LPLLAVTFITESSLVAAG-HDC----FPVLFTYDSAAGKLSFGGRLD  286 (372)
T ss_dssp             EEEGGGTTEEEE--EECSS------CCEEEEEEEETTEEEEEE-TTS----SCEEEEEETTTTEEEECCCCC
T ss_pred             EEECCCCceeEE--EccCC------CCeEEEEEecCCCEEEEE-eCC----eEEEEEccCcCceEEEeeccC
Confidence            999876653321  11111      112222333355666666 433    366666666  7776555443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.17  E-value=0.1  Score=49.28  Aligned_cols=195  Identities=11%  Similarity=0.093  Sum_probs=88.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .++.+|+.++++..+... ..               ....+.+..- +..||+.+.. ......-.+|.+|..++....+
T Consensus        30 ~~~~~d~~~g~~~~~~~~-~~---------------~~p~~l~~spdg~~l~~~~~~-~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           30 YTFRFNEETGESLPLSDA-EV---------------ANPSYLIPSADGKFVYSVNEF-SKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEETTTCCEEEEEEE-EC---------------SCCCSEEECTTSSEEEEEECC-SSTTCEEEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCCEEEeecc-cC---------------CCCceEEECCCCCEEEEEEcc-CCCCCcEEEEEEeCCCCcEEEe
Confidence            356667888888877664 11               1111112222 4456665442 1111222356667777888776


Q ss_pred             ecCCCCCC-CCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECCCCe-EE----EeeeCCCCCCC-----CCCceEEE
Q 012184           95 ETSGKVPV-ARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLETMT-WD----AVEVTQTPPAP-----RYDHSAAL  162 (469)
Q Consensus        95 ~~~g~~p~-~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~-W~----~~~~~g~~p~~-----r~~~~~~~  162 (469)
                      ...   +. ...-+.++. +++ ||+.+ +.     .+.+.+|++.+.. ..    .....|..|.+     ...|.++.
T Consensus        93 ~~~---~~~~~~p~~~~~-dg~~l~~~~-~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  162 (361)
T 3scy_A           93 NTQ---KTMGADPCYLTT-NGKNIVTAN-YS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI  162 (361)
T ss_dssp             EEE---ECSSSCEEEEEE-CSSEEEEEE-TT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred             eEe---ccCCCCcEEEEE-CCCEEEEEE-CC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence            532   11 112222333 554 55543 22     2457888876432 11    11111221211     11133444


Q ss_pred             EcCc-EEEEEecCCCCcccCcEEEEECCCCc-------eEee---eecCCCCCCCcceEEEEE-CC-EEEEEecCCCCCC
Q 012184          163 HANR-YLIVFGGCSHSIFFNDLHVLDLQTNE-------WSQP---EIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNG  229 (469)
Q Consensus       163 ~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~-------W~~~---~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~  229 (469)
                      ..++ ++|+.+..     .+.+++|++....       ....   ... ..+.......++.. ++ .+|+.+..     
T Consensus       163 spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~-----  231 (361)
T 3scy_A          163 TPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNSDGKFAYLINEI-----  231 (361)
T ss_dssp             CTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT-----
T ss_pred             CCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcCCCCEEEEEcCC-----
Confidence            4455 46665421     2467788766543       2111   000 11111112233333 34 46666432     


Q ss_pred             cceEEEEECCCCcEEEecc
Q 012184          230 CQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       230 ~~d~~~~d~~~~~W~~~~~  248 (469)
                      .+.+.+||+.+..+..+..
T Consensus       232 ~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          232 GGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             TCEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEecCCceEEeEE
Confidence            2368888887777655443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.15  E-value=0.072  Score=48.02  Aligned_cols=229  Identities=10%  Similarity=0.030  Sum_probs=114.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCC-CeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET-NLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t-~~W~~~   94 (469)
                      .++.+|+.++....+....                 ......+..-++..+++++ .      ..++.+|+.+ +....+
T Consensus        23 ~i~~~d~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~l~~~~-~------~~i~~~d~~~~~~~~~~   78 (297)
T 2ojh_A           23 SIEIFNIRTRKMRVVWQTP-----------------ELFEAPNWSPDGKYLLLNS-E------GLLYRLSLAGDPSPEKV   78 (297)
T ss_dssp             EEEEEETTTTEEEEEEEES-----------------SCCEEEEECTTSSEEEEEE-T------TEEEEEESSSCCSCEEC
T ss_pred             eEEEEeCCCCceeeeccCC-----------------cceEeeEECCCCCEEEEEc-C------CeEEEEeCCCCCCceEe
Confidence            7999999998877655431                 1111111222455555543 1      2499999998 776655


Q ss_pred             ecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEe
Q 012184           95 ETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFG  172 (469)
Q Consensus        95 ~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~G  172 (469)
                      ..   .+. .........-+++.+++++....  ....++.+++.+.....+...    .+  .+.+....++ .|++.+
T Consensus        79 ~~---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~----~~--~~~~~~spdg~~l~~~~  147 (297)
T 2ojh_A           79 DT---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKN----LP--SYWHGWSPDGKSFTYCG  147 (297)
T ss_dssp             CC---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSS----SS--EEEEEECTTSSEEEEEE
T ss_pred             cc---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecC----CC--ccceEECCCCCEEEEEE
Confidence            42   121 11111122224555555553322  256799999887765444311    11  2222332244 455444


Q ss_pred             cCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184          173 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  251 (469)
Q Consensus       173 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~  251 (469)
                      +.+..   ..+|.+++.+.....+..     .+.....++.. ++..+++++...  ....+|.+++.......+...  
T Consensus       148 ~~~~~---~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~--  215 (297)
T 2ojh_A          148 IRDQV---FDIYSMDIDSGVETRLTH-----GEGRNDGPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERITDS--  215 (297)
T ss_dssp             EETTE---EEEEEEETTTCCEEECCC-----SSSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEECCCC--
T ss_pred             CCCCc---eEEEEEECCCCcceEccc-----CCCccccceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEEecC--
Confidence            43321   367777887776655431     11111222222 444444433211  245788888877766655321  


Q ss_pred             CCCCCCCCcceEEEEEcCCcEEEEEeccCCC-------CCceEEEEECCCCCCC
Q 012184          252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-------YNNEVFVMRLKPRDIP  298 (469)
Q Consensus       252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-------~~~~~~~~d~~~~~w~  298 (469)
                             ..........+++..+++++.++.       ....++++|+.+....
T Consensus       216 -------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          216 -------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             -------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred             -------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence                   122223334444444555544321       2356999999876554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.14  E-value=0.15  Score=46.79  Aligned_cols=192  Identities=13%  Similarity=0.083  Sum_probs=95.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.+      ..+..||+.++.-...-.   ..  .....++.+  ++.+++.|+.+.      .+.+||+.+
T Consensus        76 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~  138 (312)
T 4ery_A           76 DSNLLVSASDD------KTLKIWDVSSGKCLKTLK---GH--SNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKT  138 (312)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCEEEEEE---CC--SSCEEEEEECSSSSEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEECCC------CEEEEEECCCCcEEEEEc---CC--CCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Confidence            55667776643      238889998876433221   11  111122223  345666776543      488999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      .+-...-.  ..  ...-.++....++.+++.|+.+     ..+.+||+.+.+......  ....+.. ..++.. ++..
T Consensus       139 ~~~~~~~~--~~--~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~  206 (312)
T 4ery_A          139 GKCLKTLP--AH--SDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLI--DDDNPPV-SFVKFSPNGKY  206 (312)
T ss_dssp             CCEEEEEC--CC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEEC--CSSCCCE-EEEEECTTSSE
T ss_pred             CEEEEEec--CC--CCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeEEe--ccCCCce-EEEEECCCCCE
Confidence            76433221  10  1111222222355577777654     358899988765433211  1111111 112222 4556


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      ++.|+.+     ..+.+||+.+..-...  ...... ..... ...+.. .++.+++.|+.++    .+.+||+.+..
T Consensus       207 l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~-~~~~~-~~~~~~-~~~~~l~sg~~dg----~i~vwd~~~~~  270 (312)
T 4ery_A          207 ILAATLD-----NTLKLWDYSKGKCLKT--YTGHKN-EKYCI-FANFSV-TGGKWIVSGSEDN----LVYIWNLQTKE  270 (312)
T ss_dssp             EEEEETT-----TEEEEEETTTTEEEEE--ECSSCC-SSSCC-CEEEEC-SSSCEEEECCTTS----CEEEEETTTCC
T ss_pred             EEEEcCC-----CeEEEEECCCCcEEEE--EEecCC-ceEEE-EEEEEe-CCCcEEEEECCCC----EEEEEECCCch
Confidence            6666643     3688999987653321  111111 01111 112222 2456777887665    38888886553

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.044  Score=51.70  Aligned_cols=194  Identities=12%  Similarity=0.131  Sum_probs=101.5

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++.+++.|+.++      .+.+||+....+..+...   ........++.+.    +.+++.|+.+.      .+.+||+
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSDK------TIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETTS------CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEE
T ss_pred             CCCEEEEEECCC------cEEEEecCCCcceeeeEe---cCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEc
Confidence            455666666432      277888876776665421   1122222333332    56666776543      4889999


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEE-cC--cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALH-AN--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  214 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  214 (469)
                      .+..|..+.....   .......+.+ .+  +.+++.|+.+     ..+.+||+.+..-.........  ...-.+++..
T Consensus        87 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~--~~~v~~~~~~  156 (379)
T 3jrp_A           87 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAH--AIGVNSASWA  156 (379)
T ss_dssp             ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECC--TTCEEEEEEC
T ss_pred             CCCceeEeeeecC---CCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCC--CCceEEEEEc
Confidence            9998876654221   1122223333 23  4567777654     4588888876632211110011  1111122222


Q ss_pred             --------------CCEEEEEecCCCCCCcceEEEEECCC--CcEEEeccCCCCCCCCCCCcceEEEEEcCC---cEEEE
Q 012184          215 --------------DENWYIVGGGDNNNGCQETIVLNMTK--LAWSILTSVKGRNPLASEGLSVCSAIIEGE---HHLVA  275 (469)
Q Consensus       215 --------------~~~l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~---~~l~v  275 (469)
                                    ++.+++.|+.++     .+.+||+.+  ..+..+..+....      ..+..+...++   ..+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h~------~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHS------DWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             CCC----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCS------SCEEEEEECCCCSSSEEEE
T ss_pred             CccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEeccc------CcEeEEEECCCCCCCCeEE
Confidence                          356777777543     466777644  3455444333221      12334444555   68888


Q ss_pred             EeccCCCCCceEEEEECCCC
Q 012184          276 FGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       276 ~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .|+.++.    +.+||+...
T Consensus       226 s~~~dg~----i~iwd~~~~  241 (379)
T 3jrp_A          226 SVSQDRT----CIIWTQDNE  241 (379)
T ss_dssp             EEETTSC----EEEEEESST
T ss_pred             EEeCCCE----EEEEeCCCC
Confidence            8887663    677777654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.09  E-value=0.096  Score=55.68  Aligned_cols=225  Identities=12%  Similarity=0.061  Sum_probs=119.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+.+||+.++++..+.... +           . .....-.+++.. ++.|++...   .+     +++||+.++.|..+
T Consensus       428 Gl~~~d~~~~~~~~~~~~~-~-----------~-l~~~~v~~i~~d~~g~lwigt~---~G-----l~~~~~~~~~~~~~  486 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRN-S-----------Q-LVNENVYAILPDGEGNLWLGTL---SA-----LVRFNPEQRSFTTI  486 (795)
T ss_dssp             EEEEEETTTCCEEEECTTT-S-----------C-CSCSCEEEEEECSSSCEEEEES---SC-----EEEEETTTTEEEEC
T ss_pred             ceeEEeCCCCcEEEeecCC-C-----------C-cCCCeeEEEEECCCCCEEEEec---Cc-----eeEEeCCCCeEEEc
Confidence            6788999988887775421 0           0 111112233332 456666532   22     89999999999887


Q ss_pred             ecCCCC-CCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC-CC-CCCceEEEEcCcEEE
Q 012184           95 ETSGKV-PVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-AP-RYDHSAALHANRYLI  169 (469)
Q Consensus        95 ~~~g~~-p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p-~~-r~~~~~~~~~~~~l~  169 (469)
                      ...... +.......+...  ++.|++-..        +-+++||+.+..+ ........+ .+ ..-.+++...++.|+
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lW  557 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIW  557 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence            632100 111111112222  456776432        2389999999888 443110101 11 112223333456677


Q ss_pred             EEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184          170 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       170 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  248 (469)
                      +...       +-+++||+.+.++........+|... ..+++.. ++.|++.+.       +-+.+||+.+..+.....
T Consensus       558 igT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~  622 (795)
T 4a2l_A          558 VGTR-------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTE  622 (795)
T ss_dssp             EEES-------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECG
T ss_pred             EEeC-------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCC
Confidence            6432       24899999999888765333344332 2333333 456777643       358899999998887654


Q ss_pred             CCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          249 VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       249 ~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      ..+. +.  ..+...++..+.++.|+ |||.++     +..|+++.
T Consensus       623 ~dGl-~~--~~f~~~~~~~~~~G~l~-~g~~~G-----l~~~~p~~  659 (795)
T 4a2l_A          623 SDGL-QS--NQFNTASYCRTSVGQMY-FGGING-----ITTFRPEL  659 (795)
T ss_dssp             GGTC-SC--SCEEEEEEEECTTSCEE-EEETTE-----EEEECGGG
T ss_pred             cCCC-cc--ccCccCceeECCCCeEE-EecCCc-----eEEEcHHH
Confidence            3221 11  12222334444455665 566443     66777643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.031  Score=59.08  Aligned_cols=236  Identities=10%  Similarity=0.042  Sum_probs=116.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--C--CEEEEEccccCCCCCcceEEEEECCCCeE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKKSSDSMIVRFIDLETNLC   91 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~iy~~GG~~~~~~~~~~~~~~d~~t~~W   91 (469)
                      .+.+||...+.+..+....                .......++.+  .  +.+++.|+.++      .+..||+.++.|
T Consensus        32 ~I~vwd~~~~~~~~~~~l~----------------~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~   89 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLT----------------GHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRW   89 (753)
T ss_dssp             EEEEEEEETTEEEEEEEEC----------------CCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEE
T ss_pred             cEEEEecCCCCCccceecc----------------CCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCcc
Confidence            6888898877887776652                12223333333  2  56777777543      288899999988


Q ss_pred             EEeecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc---
Q 012184           92 GVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA---  164 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~--~--~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~---  164 (469)
                      ..+...   ........++.+  +  +.+++.|+.++      .+.+||+.+..-.........+.+  -.++....   
T Consensus        90 ~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~~~--v~~l~~~p~~~  158 (753)
T 3jro_A           90 SQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATI  158 (753)
T ss_dssp             EEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCSSC--EEEEEECCCC-
T ss_pred             cccccc---cCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCCCc--eEEEEecCccc
Confidence            776632   222222333333  2  56777776443      478888776521111000011111  11111111   


Q ss_pred             ----------CcEEEEEecCCCCcccCcEEEEECCCC--ceEeeeecCCCCCCCcceEEEEE-C---CEEEEEecCCCCC
Q 012184          165 ----------NRYLIVFGGCSHSIFFNDLHVLDLQTN--EWSQPEIKGDLVTGRAGHAGITI-D---ENWYIVGGGDNNN  228 (469)
Q Consensus       165 ----------~~~l~v~GG~~~~~~~~~i~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~-~---~~l~v~GG~~~~~  228 (469)
                                ++.+++.|+.+     ..|.+||+.+.  .+..+.....  ....-.+++.. +   +.+++.||.++  
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg--  229 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR--  229 (753)
T ss_dssp             --------CGGGCCEEEEETT-----SCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSS--
T ss_pred             ccccccccCCCCCEEEEEECC-----CeEEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCC--
Confidence                      34567777654     34778887654  3433322111  11112223332 3   57788877543  


Q ss_pred             CcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC-CCCCCcccc
Q 012184          229 GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP-RDIPRPKIF  303 (469)
Q Consensus       229 ~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~-~~w~~~~~~  303 (469)
                         .+.+||+.+..-..........   .....+..+...+++.+++.||.++.    +.+||+.. ..|.....+
T Consensus       230 ---~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~s~s~Dg~----I~vwd~~~~~~~~~~~~~  295 (753)
T 3jro_A          230 ---TCIIWTQDNEQGPWKKTLLKEE---KFPDVLWRASWSLSGNVLALSGGDNK----VTLWKENLEGKWEPAGEV  295 (753)
T ss_dssp             ---CEEEEEESSSSSCCBCCBSSSS---CCSSCCCCEEECTTTCCEEEECSSSC----EECCBCCSSSCCBCCCCB
T ss_pred             ---EEEEecCCCCCCcceeEEeccC---CCCCceEEEEEcCCCCEEEEEcCCCE----EEEEecCCCCCccccccc
Confidence               4677777654211000111000   01112222333445667778876653    77777763 455544433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.06  E-value=0.045  Score=53.42  Aligned_cols=149  Identities=11%  Similarity=0.147  Sum_probs=76.8

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEE
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD  136 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d  136 (469)
                      .++...+..++.|+.++      .+..||+.+..-.....  ..........++.+++..++.|+.+      ..+.+||
T Consensus       217 ~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd  282 (435)
T 1p22_A          217 LHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWN  282 (435)
T ss_dssp             EEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEE
T ss_pred             EEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEE
Confidence            33444556667766432      28888887765221110  0011122223344456666666643      3488999


Q ss_pred             CCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC
Q 012184          137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  216 (469)
Q Consensus       137 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  216 (469)
                      +.+..-...-. +    ......++.++++ +++.|+.+     +.+.+||+.+..-...-  ..   ......++.+++
T Consensus       283 ~~~~~~~~~~~-~----~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~--~~---h~~~v~~~~~~~  346 (435)
T 1p22_A          283 TSTCEFVRTLN-G----HKRGIACLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVL--EG---HEELVRCIRFDN  346 (435)
T ss_dssp             TTTCCEEEEEE-C----CSSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE--CC---CSSCEEEEECCS
T ss_pred             CCcCcEEEEEc-C----CCCcEEEEEeCCC-EEEEEeCC-----CeEEEEECCCCCEEEEE--eC---CcCcEEEEEecC
Confidence            98876433221 1    1112233344344 66666654     45889999876533211  11   111222334477


Q ss_pred             EEEEEecCCCCCCcceEEEEECCC
Q 012184          217 NWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       217 ~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      ..++.|+.++     .+.+||+.+
T Consensus       347 ~~l~sg~~dg-----~i~vwd~~~  365 (435)
T 1p22_A          347 KRIVSGAYDG-----KIKVWDLVA  365 (435)
T ss_dssp             SEEEEEETTS-----CEEEEEHHH
T ss_pred             CEEEEEeCCC-----cEEEEECCC
Confidence            7888887543     477788644

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.97  E-value=0.14  Score=49.25  Aligned_cols=220  Identities=15%  Similarity=0.133  Sum_probs=112.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..||..++.........                 ......++.+  ++.+++.|+.++      .+..||+.++....
T Consensus       114 ~v~lw~~~~~~~~~~~~~~-----------------~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~  170 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETD-----------------ESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLR  170 (401)
T ss_dssp             EEEEEETTTCCEEEEEECC-----------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEE
T ss_pred             eEEEeeCCCCcEeEeeecC-----------------CCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEE
Confidence            6888899888766555431                 1112223333  556666766432      38899998876544


Q ss_pred             eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184           94 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  173 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG  173 (469)
                      .-   .  .......++.+++.+++.|+.+      ..+.+||+.+..-......+   ....-.++....++.+++.|+
T Consensus       171 ~~---~--~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          171 TM---A--GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             EE---C--CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEE
T ss_pred             Ee---c--CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEEe
Confidence            33   1  1122233344466677777644      35888998743321111111   111112233333555777777


Q ss_pred             CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184          174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  251 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~  251 (469)
                      .+     +.+.+||+.+..-....  ..  ....-.+++..  ++.+++.||....   ..+.+||+.+..-...-..  
T Consensus       237 ~d-----~~v~iwd~~~~~~~~~~--~~--~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~--  302 (401)
T 4aez_A          237 ND-----NVVQIWDARSSIPKFTK--TN--HNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA--  302 (401)
T ss_dssp             TT-----SCEEEEETTCSSEEEEE--CC--CSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC--
T ss_pred             CC-----CeEEEccCCCCCccEEe--cC--CcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC--
Confidence            54     46889998875433211  11  11112233333  3467777753222   3688999887654332211  


Q ss_pred             CCCCCCCCcceEEEEEcC-CcEEEEEec-cCCCCCceEEEEECCCCCC
Q 012184          252 RNPLASEGLSVCSAIIEG-EHHLVAFGG-YNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       252 ~~p~~r~~~s~~~~~~~~-~~~l~v~GG-~~~~~~~~~~~~d~~~~~w  297 (469)
                             ...+..+...+ +..+++.+| .++    .+.+||+.....
T Consensus       303 -------~~~v~~~~~s~~~~~l~~~~g~~dg----~i~v~~~~~~~~  339 (401)
T 4aez_A          303 -------GSQVTSLIWSPHSKEIMSTHGFPDN----NLSIWSYSSSGL  339 (401)
T ss_dssp             -------SSCEEEEEECSSSSEEEEEECTTTC----EEEEEEEETTEE
T ss_pred             -------CCcEEEEEECCCCCeEEEEeecCCC----cEEEEecCCccc
Confidence                   11233334444 345555544 333    577777765433

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.97  E-value=0.12  Score=47.95  Aligned_cols=152  Identities=13%  Similarity=0.070  Sum_probs=74.3

Q ss_pred             EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184          115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  194 (469)
                      .+++.|+.+      ..+.+||+.+........ +   ....-.+++...++.+++.|+.+     ..+.+||+.+..-.
T Consensus       186 ~~~~s~~~d------~~i~i~d~~~~~~~~~~~-~---h~~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~  250 (340)
T 4aow_A          186 PIIVSCGWD------KLVKVWNLANCKLKTNHI-G---HTGYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKHL  250 (340)
T ss_dssp             CEEEEEETT------SCEEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEE
T ss_pred             cEEEEEcCC------CEEEEEECCCCceeeEec-C---CCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCcee
Confidence            455555543      238889998877544321 1   11111233333356677777755     35788898766533


Q ss_pred             eeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE-eccCCCCCCCCCCCcceEEEEEcCCcEE
Q 012184          195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHL  273 (469)
Q Consensus       195 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~~~~p~~r~~~s~~~~~~~~~~~l  273 (469)
                      ....     ....-.+++...+..++.++.+     ..+.+||+.+..-.. +...............+..+...+++.+
T Consensus       251 ~~~~-----~~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          251 YTLD-----GGDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             EEEE-----CSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             eeec-----CCceEEeeecCCCCceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence            2211     1111223333344455555532     357788887665332 1111100000011122333444555667


Q ss_pred             EEEeccCCCCCceEEEEECCCC
Q 012184          274 VAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       274 ~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      ++.||.++.    +.+||+++.
T Consensus       321 l~sgs~Dg~----v~iW~~~tG  338 (340)
T 4aow_A          321 LFAGYTDNL----VRVWQVTIG  338 (340)
T ss_dssp             EEEEETTSC----EEEEEEEC-
T ss_pred             EEEEeCCCE----EEEEeCCCc
Confidence            778887663    777777554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.93  E-value=0.15  Score=47.27  Aligned_cols=164  Identities=10%  Similarity=0.039  Sum_probs=76.3

Q ss_pred             CEEEEEeccCCCCCccCcEEEEECCC-CeEEEee--eCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECC
Q 012184          114 SRLIIFGGEDRSRKLLNDVHFLDLET-MTWDAVE--VTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQ  189 (469)
Q Consensus       114 ~~lyi~GG~~~~~~~~~~v~~~d~~t-~~W~~~~--~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~  189 (469)
                      ..||+.+..      .+.+.+||+.+ .+...+.  .. ..+....-..++...++ ++|+.+..+     +.+.+||+.
T Consensus       141 ~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~  208 (343)
T 1ri6_A          141 RTLWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELK  208 (343)
T ss_dssp             SEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESS
T ss_pred             CEEEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEec
Confidence            357665422      24589999887 6665432  11 11111111123333343 566665322     468889884


Q ss_pred             --CCceEeeeecCCCCCC----CcceEEEEE-CC-EEEEEecCCCCCCcceEEEEECC--CCcEEEeccCCCCCCCCCCC
Q 012184          190 --TNEWSQPEIKGDLVTG----RAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEG  259 (469)
Q Consensus       190 --~~~W~~~~~~~~~p~~----r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d~~--~~~W~~~~~~~~~~p~~r~~  259 (469)
                        +..+.........+..    .....++.. ++ .+|+.+..     .+.+.+||+.  +..+..+..++....     
T Consensus       209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~-----  278 (343)
T 1ri6_A          209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLSKEGFQPTETQ-----  278 (343)
T ss_dssp             CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEEEEEEEECSSS-----
T ss_pred             CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceEEeeeecCCCc-----
Confidence              4555433221122221    111123333 23 56655432     2367788876  555665544332110     


Q ss_pred             cceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCCCcccc
Q 012184          260 LSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIF  303 (469)
Q Consensus       260 ~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~~  303 (469)
                        ...+...+ +.+||+.++.++  .-.+|.+|+.+..+..+..+
T Consensus       279 --~~~~~~s~dg~~l~~~~~~~~--~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          279 --PRGFNVDHSGKYLIAAGQKSH--HISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             --CCCEEECTTSSEEEEECTTTC--EEEEEEEETTTTEEEEEEEE
T ss_pred             --cceEEECCCCCEEEEecCCCC--eEEEEEEcCCCceeeEcccc
Confidence              11122333 345666554333  22355557767666554444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.89  E-value=0.41  Score=49.77  Aligned_cols=125  Identities=14%  Similarity=0.062  Sum_probs=70.6

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCC--CC---CCCcceEEEEECCEEEEEeccCCCCCc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGK--VP---VARGGHSVTLVGSRLIIFGGEDRSRKL  128 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~--~p---~~r~~~~~~~~~~~lyi~GG~~~~~~~  128 (469)
                      .+-++.++.||+....       +.++.+|..|++  |+.-.....  .+   ......+.+..+++||+...       
T Consensus        71 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------  136 (677)
T 1kb0_A           71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------  136 (677)
T ss_dssp             CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred             eCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------
Confidence            3445679999998652       349999999887  876542110  00   00122345557788887532       


Q ss_pred             cCcEEEEECCCCe--EEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184          129 LNDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       129 ~~~v~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  196 (469)
                      ...++.+|..|++  |+.-... ..+.. ....+.++. ++.+|+..+.........++.||..+++  |..-
T Consensus       137 dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          137 DGRLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TSEEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            3459999998875  7764210 11111 111122333 6767664432221234679999998876  8764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.85  E-value=0.15  Score=53.86  Aligned_cols=178  Identities=13%  Similarity=0.107  Sum_probs=88.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++..+++|+.+      ..+.+||..++.......   ...  ....++.+  ++..++.|+.+      ..+.+||+.+
T Consensus        66 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~---~~~--~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~  128 (814)
T 3mkq_A           66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFE---AHP--DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWEN  128 (814)
T ss_dssp             GGTEEEEEETT------SEEEEEETTTCCEEEEEE---CCS--SCEEEEEECSSSSEEEEEETT------SEEEEEEGGG
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEe---cCC--CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCC
Confidence            55566666642      248999998887654331   111  11222233  34455566533      3488899877


Q ss_pred             C-eEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE---
Q 012184          140 M-TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---  214 (469)
Q Consensus       140 ~-~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---  214 (469)
                      + ....... +   ....-.+++... ++.++++|+.+     ..+.+||+.+..-......   ........++..   
T Consensus       129 ~~~~~~~~~-~---~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~  196 (814)
T 3mkq_A          129 NWALEQTFE-G---HEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLP  196 (814)
T ss_dssp             TSEEEEEEE-C---CSSCEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEEC---CCTTCCCEEEECCST
T ss_pred             CceEEEEEc-C---CCCcEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEec---CCCCCEEEEEEEECC
Confidence            6 3332221 1   111112233333 45677777654     3588999876543222111   111122223332   


Q ss_pred             CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184          215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  281 (469)
Q Consensus       215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~  281 (469)
                      ++.++++|+.+     ..+.+||+.+..-..  .+...      ...+..+...+++.+++.|+.++
T Consensus       197 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~--~~~~~------~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          197 DKPYMITASDD-----LTIKIWDYQTKSCVA--TLEGH------MSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             TCCEEEEECTT-----SEEEEEETTTTEEEE--EEECC------SSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCcEEE--EEcCC------CCCEEEEEEcCCCCEEEEEeCCC
Confidence            45677777643     358889987765322  11111      11233344445555667777554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.83  E-value=0.055  Score=52.67  Aligned_cols=186  Identities=10%  Similarity=0.013  Sum_probs=100.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE---CCEEEEEccccCCCCCcceEEEEECCCCeEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCG   92 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~   92 (469)
                      .++.+|+.+++...+...                + .  ....+.+   +..|++.+....    ...++.+|+.++...
T Consensus       204 ~i~~~d~~tg~~~~l~~~----------------~-~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~  260 (415)
T 2hqs_A          204 ALVIQTLANGAVRQVASF----------------P-R--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIR  260 (415)
T ss_dssp             EEEEEETTTCCEEEEECC----------------S-S--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEE
T ss_pred             EEEEEECCCCcEEEeecC----------------C-C--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEE
Confidence            788999988877654432                1 1  1222222   344655544322    235999999998876


Q ss_pred             EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEE
Q 012184           93 VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV  170 (469)
Q Consensus        93 ~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v  170 (469)
                      .+..   .+   .......+  +++.+++++...   ....++++|+.+..-..+..     .......+....++..++
T Consensus       261 ~l~~---~~---~~~~~~~~spdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~  326 (415)
T 2hqs_A          261 QVTD---GR---SNNTEPTWFPDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMV  326 (415)
T ss_dssp             ECCC---CS---SCEEEEEECTTSSEEEEEECTT---SSCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEE
T ss_pred             eCcC---CC---CcccceEECCCCCEEEEEECCC---CCcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEE
Confidence            6542   11   12223333  444444443221   13469999998877544431     111222223323554555


Q ss_pred             EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184          171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  248 (469)
                      +++....  ...++++|+.+.....+..  .   . ...+.+.. ++..+++++.+..  ...++++|+.......++.
T Consensus       327 ~~~~~~g--~~~i~~~d~~~~~~~~l~~--~---~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          327 MVSSNGG--QQHIAKQDLATGGVQVLSS--T---F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             EEEECSS--CEEEEEEETTTCCEEECCC--S---S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECCC
T ss_pred             EEECcCC--ceEEEEEECCCCCEEEecC--C---C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEeeC
Confidence            5543321  3579999999888765431  1   1 22233332 4566666654322  3479999998877666643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.82  E-value=0.33  Score=45.48  Aligned_cols=70  Identities=11%  Similarity=-0.017  Sum_probs=36.9

Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCC--C
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK--L  241 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~--~  241 (469)
                      ++..++.|+.+     +.+.+||+.+.+-...-.  . ... .-.+++.. ++.+++.| .+     ..+.+||+..  +
T Consensus       213 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~--~-~~~-~v~~~~~~~~~~~l~~~-~d-----~~i~i~~~~~~~~  277 (372)
T 1k8k_C          213 NGSRVAWVSHD-----STVCLADADKKMAVATLA--S-ETL-PLLAVTFITESSLVAAG-HD-----CFPVLFTYDSAAG  277 (372)
T ss_dssp             SSSEEEEEETT-----TEEEEEEGGGTTEEEEEE--C-SSC-CEEEEEEEETTEEEEEE-TT-----SSCEEEEEETTTT
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCceeEEEc--c-CCC-CeEEEEEecCCCEEEEE-eC-----CeEEEEEccCcCc
Confidence            55566666643     458899987765432211  1 111 11223333 55655554 32     2456777766  8


Q ss_pred             cEEEeccC
Q 012184          242 AWSILTSV  249 (469)
Q Consensus       242 ~W~~~~~~  249 (469)
                      .|..+..+
T Consensus       278 ~~~~~~~~  285 (372)
T 1k8k_C          278 KLSFGGRL  285 (372)
T ss_dssp             EEEECCCC
T ss_pred             eEEEeecc
Confidence            88876443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.16  Score=48.48  Aligned_cols=147  Identities=12%  Similarity=0.047  Sum_probs=72.7

Q ss_pred             ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ..+..++.|+..+      .+..||+.+..-....   ...... -.+++.. ++.+++.|+.+      ..+.+||+.+
T Consensus       215 ~~~~~~~~~~~~g------~i~~~d~~~~~~~~~~---~~~~~~-i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~  278 (425)
T 1r5m_A          215 VDDDKFVIPGPKG------AIFVYQITEKTPTGKL---IGHHGP-ISVLEFNDTNKLLLSASDD------GTLRIWHGGN  278 (425)
T ss_dssp             EETTEEEEECGGG------CEEEEETTCSSCSEEE---CCCSSC-EEEEEEETTTTEEEEEETT------SCEEEECSSS
T ss_pred             cCCCEEEEEcCCC------eEEEEEcCCCceeeee---ccCCCc-eEEEEECCCCCEEEEEcCC------CEEEEEECCC
Confidence            3344466665432      3899998876432221   111111 1222222 45566666543      2488888877


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      ......-.  .  ....-.++....++ +++.|+.+     ..+.+||+.+.+-.....  .  ....-.+++.. ++.+
T Consensus       279 ~~~~~~~~--~--~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~--~--~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          279 GNSQNCFY--G--HSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSI--V--DGVPIFAGRISQDGQK  344 (425)
T ss_dssp             BSCSEEEC--C--CSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEE--C--TTCCEEEEEECTTSSE
T ss_pred             CccceEec--C--CCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecc--c--CCccEEEEEEcCCCCE
Confidence            54322211  1  11122334444466 66666644     468999988765433221  1  11111222222 4567


Q ss_pred             EEEecCCCCCCcceEEEEECCCCc
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      +++|+.+     ..+.+||+.+..
T Consensus       345 l~~~~~d-----g~i~i~~~~~~~  363 (425)
T 1r5m_A          345 YAVAFMD-----GQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEETT-----SCEEEEECHHHH
T ss_pred             EEEEECC-----CeEEEEECCCCc
Confidence            7776643     257788876544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.75  E-value=0.087  Score=49.60  Aligned_cols=187  Identities=9%  Similarity=0.040  Sum_probs=97.0

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.||.+.      .+..+|+.++.|.......  ........++.+  ++.+++.|+.+.      .+.++|..+
T Consensus        27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS------CEEEEEEETTEEEEEEEEC--SSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECC
T ss_pred             CCCEEEEEcCCC------eEEEEEcCCCcceeeeeec--cccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccC
Confidence            667777777543      2788888888876433210  111112223333  456677776543      377788777


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCCCCCCcceEEEEE-CCE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DEN  217 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~~  217 (469)
                      ..+..+......  ...-.++....++.+++.|+.+     ..+.++|+.+.. +..+........  .-.+++.. ++.
T Consensus        93 ~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~  163 (345)
T 3fm0_A           93 DDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQE  163 (345)
T ss_dssp             C-EEEEEEECCC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEECCCCS--CEEEEEECSSSS
T ss_pred             CCeEEEEEccCC--CCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEecCcCC--CeEEEEECCCCC
Confidence            766544321111  1111223333356677777755     357888876543 333321111111  11122222 456


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK  282 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~  282 (469)
                      +++.|+.++     .+.+||..+..|..+..+.+..      ..+..+...+++.+++.|+.++.
T Consensus       164 ~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~h~------~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          164 LLASASYDD-----TVKLYREEEDDWVCCATLEGHE------STVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             CEEEEETTS-----CEEEEEEETTEEEEEEEECCCS------SCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEeCCC-----cEEEEEecCCCEEEEEEecCCC------CceEEEEECCCCCEEEEEeCCCe
Confidence            677776543     4778888888887654443322      22334445556677778887653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.73  E-value=0.37  Score=44.73  Aligned_cols=184  Identities=11%  Similarity=0.071  Sum_probs=94.4

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++..++.|+..      ..+..||..++.-.....   .. . ....++.+  ++++++.|+.+.      .+.+||+.+
T Consensus       133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~---~~-~-~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~  195 (321)
T 3ow8_A          133 DSQYLATGTHV------GKVNIFGVESGKKEYSLD---TR-G-KFILSIAYSPDGKYLASGAIDG------IINIFDIAT  195 (321)
T ss_dssp             TSSEEEEECTT------SEEEEEETTTCSEEEEEE---CS-S-SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCceeEEec---CC-C-ceEEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence            55666666543      238888888776432221   01 1 11222233  456667776543      488999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      .+-...- .+ ...  .-.+++...++.+++.|+.+     ..+.+||+.+......- .+   ....-.+++.. ++..
T Consensus       196 ~~~~~~~-~~-h~~--~v~~l~~spd~~~l~s~s~d-----g~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~sp~~~~  262 (321)
T 3ow8_A          196 GKLLHTL-EG-HAM--PIRSLTFSPDSQLLVTASDD-----GYIKIYDVQHANLAGTL-SG---HASWVLNVAFCPDDTH  262 (321)
T ss_dssp             TEEEEEE-CC-CSS--CCCEEEECTTSCEEEEECTT-----SCEEEEETTTCCEEEEE-CC---CSSCEEEEEECTTSSE
T ss_pred             CcEEEEE-cc-cCC--ceeEEEEcCCCCEEEEEcCC-----CeEEEEECCCcceeEEE-cC---CCCceEEEEECCCCCE
Confidence            8643322 11 111  11233333466677777754     35889998776543321 11   11111122222 4567


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      ++.|+.++     .+.++|+.+..-..  .+....      -.+..+...+++..++.||.++.    +.+||.
T Consensus       263 l~s~s~D~-----~v~iwd~~~~~~~~--~~~~h~------~~v~~v~~s~~g~~l~s~~~d~~----i~vwd~  319 (321)
T 3ow8_A          263 FVSSSSDK-----SVKVWDVGTRTCVH--TFFDHQ------DQVWGVKYNGNGSKIVSVGDDQE----IHIYDC  319 (321)
T ss_dssp             EEEEETTS-----CEEEEETTTTEEEE--EECCCS------SCEEEEEECTTSSEEEEEETTCC----EEEEEC
T ss_pred             EEEEeCCC-----cEEEEeCCCCEEEE--EEcCCC------CcEEEEEECCCCCEEEEEeCCCe----EEEEeC
Confidence            77777532     47888987765332  222111      12333444555566777876653    666663

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.72  E-value=0.37  Score=44.70  Aligned_cols=188  Identities=13%  Similarity=0.112  Sum_probs=97.4

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.+++.|+.+.      .+..+|+.++.-......+  +.. . .+++.. ++..++.|+.+      ..+.+||+.+.
T Consensus        91 ~~~~l~s~s~D~------~i~lWd~~~~~~~~~~~~~--~~~-~-~~~~~spdg~~l~~g~~d------g~v~i~~~~~~  154 (321)
T 3ow8_A           91 TLPIAASSSLDA------HIRLWDLENGKQIKSIDAG--PVD-A-WTLAFSPDSQYLATGTHV------GKVNIFGVESG  154 (321)
T ss_dssp             SSSEEEEEETTS------EEEEEETTTTEEEEEEECC--TTC-C-CCEEECTTSSEEEEECTT------SEEEEEETTTC
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCCEEEEEeCC--Ccc-E-EEEEECCCCCEEEEEcCC------CcEEEEEcCCC
Confidence            345666666432      3888999888754332211  111 1 122222 45566666543      34888898876


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWY  219 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~  219 (469)
                      .-..... +   ....-.+++...++.+++.|+.+     ..+.+||+.+.+-...- .+ ...+  -.+++.. ++.++
T Consensus       155 ~~~~~~~-~---~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~-~~-h~~~--v~~l~~spd~~~l  221 (321)
T 3ow8_A          155 KKEYSLD-T---RGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTL-EG-HAMP--IRSLTFSPDSQLL  221 (321)
T ss_dssp             SEEEEEE-C---SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE-CC-CSSC--CCEEEECTTSCEE
T ss_pred             ceeEEec-C---CCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-cc-cCCc--eeEEEEcCCCCEE
Confidence            5432211 0   11112233333466677777755     35889999877543221 11 1111  1122322 45677


Q ss_pred             EEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          220 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       220 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +.|+.++     .+.+||+.+.....  .+.+..      ..+..+...+++.+++.|+.++    .+.+||+.+.
T Consensus       222 ~s~s~dg-----~i~iwd~~~~~~~~--~~~~h~------~~v~~~~~sp~~~~l~s~s~D~----~v~iwd~~~~  280 (321)
T 3ow8_A          222 VTASDDG-----YIKIYDVQHANLAG--TLSGHA------SWVLNVAFCPDDTHFVSSSSDK----SVKVWDVGTR  280 (321)
T ss_dssp             EEECTTS-----CEEEEETTTCCEEE--EECCCS------SCEEEEEECTTSSEEEEEETTS----CEEEEETTTT
T ss_pred             EEEcCCC-----eEEEEECCCcceeE--EEcCCC------CceEEEEECCCCCEEEEEeCCC----cEEEEeCCCC
Confidence            7777532     47888987765432  122111      1233344455556777887665    3778887654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.045  Score=57.91  Aligned_cols=194  Identities=12%  Similarity=0.130  Sum_probs=100.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++.+++.||.++      .+.+||+.+..+..+...   ......-.++.+  +  +.+++.|+.++      .+.+||+
T Consensus        20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSDK------TIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETTT------EEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEE
T ss_pred             CCCeEEEEECCC------cEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEEC
Confidence            455666666432      378888877777766532   222222333333  2  56777776543      4889999


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEE-cC--cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALH-AN--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  214 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  214 (469)
                      .++.|..+.....   ....-..+.+ .+  +.+++.|+.+     ..+.+||+.+..-.........+.  .-.+++..
T Consensus        85 ~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~  154 (753)
T 3jro_A           85 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAI--GVNSASWA  154 (753)
T ss_dssp             ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSSSCCCCEEEECCSS--CEEEEEEC
T ss_pred             CCCcccccccccC---CCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecCCCcceeEeecCCC--ceEEEEec
Confidence            9998876653221   1122222333 23  5577777754     358888887653211111001111  11122221


Q ss_pred             --------------CCEEEEEecCCCCCCcceEEEEECCC--CcEEEeccCCCCCCCCCCCcceEEEEEcCC---cEEEE
Q 012184          215 --------------DENWYIVGGGDNNNGCQETIVLNMTK--LAWSILTSVKGRNPLASEGLSVCSAIIEGE---HHLVA  275 (469)
Q Consensus       215 --------------~~~l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~---~~l~v  275 (469)
                                    ++.+++.|+.++     .+.+||+.+  ..+..+..+....      ..+..+...++   +.+++
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h~------~~V~~l~~sp~~~~~~~l~  223 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHS------DWVRDVAWSPTVLLRSYLA  223 (753)
T ss_dssp             CCC---------CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCS------SCEEEEEECCCCSSSEEEE
T ss_pred             CcccccccccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCCC------CcEEEEEeccCCCCCCEEE
Confidence                          246677776533     366676644  3444443332221      12334444555   68888


Q ss_pred             EeccCCCCCceEEEEECCCC
Q 012184          276 FGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       276 ~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .||.++.    +.+||+...
T Consensus       224 s~s~Dg~----I~iwd~~~~  239 (753)
T 3jro_A          224 SVSQDRT----CIIWTQDNE  239 (753)
T ss_dssp             EEESSSC----EEEEEESSS
T ss_pred             EEecCCE----EEEecCCCC
Confidence            8887653    667776553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.72  E-value=0.26  Score=51.23  Aligned_cols=153  Identities=11%  Similarity=0.065  Sum_probs=78.1

Q ss_pred             cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC-ceEeeeecCCCCCCC-
Q 012184          129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQPEIKGDLVTGR-  206 (469)
Q Consensus       129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~~~~~~~~p~~r-  206 (469)
                      ...++++|+.+..-..+...  .........+....|++.++++..+.......++++|+.+. ....+..... .... 
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~~  310 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYVE  310 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCCC
T ss_pred             eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeEC
Confidence            45699999999886555321  01111112222223554455544443334468999999988 6665532111 1100 


Q ss_pred             cceEEEEE---CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEE-EEEcC-CcEEEEEeccCC
Q 012184          207 AGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS-AIIEG-EHHLVAFGGYNG  281 (469)
Q Consensus       207 ~~~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~-~~~~~-~~~l~v~GG~~~  281 (469)
                      ....++..   ++++++.+..+   ....+|.+|........+..  +.       ..... ....+ +..|++.+..++
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~---g~~~l~~~~~~~~~~~~l~~--~~-------~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRD---GWNHLYLYDTTGRLIRQVTK--GE-------WEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTT---SSCEEEEEETTSCEEEECCC--SS-------SCEEEEEEECTTSSEEEEEESSSC
T ss_pred             ccCCceeecCCCCEEEEEEccC---CccEEEEEECCCCEEEecCC--CC-------eEEEeeeEEcCCCCEEEEEecCCC
Confidence            00122222   56666555433   24678999977776666532  11       11111 23344 345665555444


Q ss_pred             CCCceEEEEECCCCC
Q 012184          282 KYNNEVFVMRLKPRD  296 (469)
Q Consensus       282 ~~~~~~~~~d~~~~~  296 (469)
                      .....+|.+|+.+..
T Consensus       379 ~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          379 PLERHFYCIDIKGGK  393 (706)
T ss_dssp             TTCBEEEEEETTCCC
T ss_pred             CceEEEEEEEcCCCC
Confidence            334578888876654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.70  E-value=0.2  Score=53.18  Aligned_cols=236  Identities=9%  Similarity=0.069  Sum_probs=117.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+..||+.++.+..+......          +.......-+++... ++.|++. .. ..+     +..||+.+..+..+
T Consensus       283 Gl~~~~~~~~~~~~~~~~~~~----------~~~l~~~~i~~i~~D~~g~lWig-t~-~~G-----l~~~~~~~~~~~~~  345 (795)
T 4a2l_A          283 DLNIYHEGTDSFASYSSNPVE----------NGSLSQRSVRSIFMDSQGGMWLG-TY-FGG-----LNYYHPIRNRFKNI  345 (795)
T ss_dssp             CEEEEETTTTEEEEECCCTTS----------TTSCSSSCEEEEEECTTSCEEEE-ES-SSC-----EEEECGGGGSSEEE
T ss_pred             hhheEcCCCCeEEEEecCCCC----------CCCCCCCcEEEEEEeCCcCEEEE-EC-CCC-----eEEeCCCcccceEE
Confidence            467788888888776543211          000111122233332 4556653 22 122     88899888877776


Q ss_pred             ecCCCCCCCCc---ceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC----CCCCCceEEEEcCc
Q 012184           95 ETSGKVPVARG---GHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP----APRYDHSAALHANR  166 (469)
Q Consensus        95 ~~~g~~p~~r~---~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p----~~r~~~~~~~~~~~  166 (469)
                      .... .+....   -.+++.- ++.|++ |...      .-+.+||+.+..+.........+    ....-++++...++
T Consensus       346 ~~~~-~~~~l~~~~V~~i~~d~~g~lWi-Gt~~------~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          346 RNIP-YKNSLSDNVVSCIVEDKDKNLWI-GTND------GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             CCCT-TSSSCSCSSEEEEEECTTSCEEE-EESS------SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             cCCC-CCCCCCCCeeEEEEECCCCCEEE-EECC------CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            5321 111111   1122222 356776 3221      23889999999888765321011    11222344444466


Q ss_pred             E-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          167 Y-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       167 ~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      . |++ |..+     .-+++||+.++++..+....+......-.+++.. ++.|+|-..       .-+++||+.+..|.
T Consensus       418 ~~lWi-gt~~-----~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          418 SLVYI-GTHA-----GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFT  484 (795)
T ss_dssp             TEEEE-EETT-----TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTTEEE
T ss_pred             CEEEE-EeCc-----CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCCeEE
Confidence            6 665 3322     3589999999888776421111111122233322 355665432       24889999999998


Q ss_pred             EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          245 ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       245 ~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      .+.....  +.......+..+..+.++.|++... .+     +++||+.+..+
T Consensus       485 ~~~~~~~--~~~~~~~~i~~i~~d~~g~lWigt~-~G-----l~~~~~~~~~~  529 (795)
T 4a2l_A          485 TIEKEKD--GTPVVSKQITTLFRDSHKRLWIGGE-EG-----LSVFKQEGLDI  529 (795)
T ss_dssp             ECCBCTT--CCBCCCCCEEEEEECTTCCEEEEES-SC-----EEEEEEETTEE
T ss_pred             Ecccccc--ccccCCceEEEEEECCCCCEEEEeC-Cc-----eEEEeCCCCeE
Confidence            7653211  1111112233444555666766442 22     66666654443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.69  E-value=0.64  Score=47.23  Aligned_cols=125  Identities=10%  Similarity=0.102  Sum_probs=69.6

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEEC-CCCe--EEEeecCCCCCC--C---CcceEEEEECCEEEEEeccCCCCC
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETNL--CGVMETSGKVPV--A---RGGHSVTLVGSRLIIFGGEDRSRK  127 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~g~~p~--~---r~~~~~~~~~~~lyi~GG~~~~~~  127 (469)
                      .+-++.++.||+....      ...++.+|. .+++  |+.-........  .   ....+.+..+++||+...      
T Consensus        56 ~~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------  123 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------  123 (571)
T ss_dssp             SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------
T ss_pred             cccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------
Confidence            3445679999998652      124999999 7776  886442110000  0   112234567888887532      


Q ss_pred             ccCcEEEEECCCC--eEEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184          128 LLNDVHFLDLETM--TWDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       128 ~~~~v~~~d~~t~--~W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  196 (469)
                       ...++.+|..|+  .|+.-..  ..+.. ....+.++. ++.+|+-.+.........++.||+.+++  |+.-
T Consensus       124 -dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          124 -NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             -TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             -CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence             345999999887  4875421  11111 111122333 6767664432111123579999998765  8753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.68  E-value=0.53  Score=45.92  Aligned_cols=146  Identities=10%  Similarity=0.121  Sum_probs=77.7

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      ++.+++.|+.+      ..+.+||+.+..-...-. +   ....-.++....++..++.|+.+     ..+.+||+.+.+
T Consensus       279 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~  343 (464)
T 3v7d_B          279 HGNIVVSGSYD------NTLIVWDVAQMKCLYILS-G---HTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE  343 (464)
T ss_dssp             ETTEEEEEETT------SCEEEEETTTTEEEEEEC-C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEec-C---CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence            44556666543      248999998876543321 1   11122233344455566667654     358999998765


Q ss_pred             eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcE
Q 012184          193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH  272 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~  272 (469)
                      -...-     .........+.+++..++.|+.+     ..+.+||+.+..-........       ......+..  ++.
T Consensus       344 ~~~~~-----~~h~~~v~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~-------~~~~~~~~~--~~~  404 (464)
T 3v7d_B          344 LMYTL-----QGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDYSRKFSYHHTN-------LSAITTFYV--SDN  404 (464)
T ss_dssp             EEEEE-----CCCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEECTT-------CCCEEEEEE--CSS
T ss_pred             EEEEE-----eCCCCcEEEEEEcCCEEEEEeCC-----CcEEEEECCCCceeeeecCCC-------CccEEEEEe--CCC
Confidence            33211     11112223344566777777753     257888987755322211111       122223333  445


Q ss_pred             EEEEeccCCCCCceEEEEECCCCCC
Q 012184          273 LVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       273 l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      +++.|+ +    ..+.+||+.+..-
T Consensus       405 ~l~~~~-d----g~i~iwd~~~g~~  424 (464)
T 3v7d_B          405 ILVSGS-E----NQFNIYNLRSGKL  424 (464)
T ss_dssp             EEEEEE-T----TEEEEEETTTCCE
T ss_pred             EEEEec-C----CeEEEEECCCCcE
Confidence            666776 3    3588999877643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.65  E-value=0.14  Score=48.47  Aligned_cols=236  Identities=14%  Similarity=0.091  Sum_probs=102.6

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCe-EE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL-CG   92 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~   92 (469)
                      .+..||+.++.|..+.....                ......++.+  ++.+++.|+.+.      .+..||+.++. |.
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~   91 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSD----------------HDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWK   91 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCC----------------CSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCC
T ss_pred             EEEEEEccCCceEEEEEEec----------------CCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCcee
Confidence            67888998888877666521                1222223333  456677766432      28888888776 44


Q ss_pred             EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184           93 VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLI  169 (469)
Q Consensus        93 ~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~  169 (469)
                      .....   ........++.+  ++.+++.|+.+.      .+.+||+.+.. |........ +....-.++....++.++
T Consensus        92 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           92 QTLVL---LRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             CEEEC---CCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEE
T ss_pred             eeeEe---cccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEE
Confidence            43321   111122223333  455666666433      37788877664 222211111 111122233333355677


Q ss_pred             EEecCCCCcccCcEEEEECCCCceEeeee-------------cCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEE
Q 012184          170 VFGGCSHSIFFNDLHVLDLQTNEWSQPEI-------------KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIV  235 (469)
Q Consensus       170 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~-------------~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~  235 (469)
                      +.|+.+     ..+.+||+.+........             .........-.+++.. ++.+++.|+.+     ..+.+
T Consensus       162 ~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i  231 (377)
T 3dwl_C          162 AAGCAD-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD-----SSVTI  231 (377)
T ss_dssp             EEEESS-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT-----TEEC-
T ss_pred             EEEeCC-----CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC-----CcEEE
Confidence            777754     357888875433211100             0011111111122222 45666666643     24667


Q ss_pred             EECCCCcE--EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCccccC
Q 012184          236 LNMTKLAW--SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ  304 (469)
Q Consensus       236 ~d~~~~~W--~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~~~  304 (469)
                      ||+.+..-  ..+..+....      ..+..+...+++.+++.|+.+     .+.+|+.....|.....+.
T Consensus       232 wd~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~  291 (377)
T 3dwl_C          232 AYPSAPEQPPRALITVKLSQ------LPLRSLLWANESAIVAAGYNY-----SPILLQGNESGWAHTRDLD  291 (377)
T ss_dssp             CEECSTTSCEEECCCEECSS------SCEEEEEEEETTEEEEEESSS-----SEEEECCCC---CCSBCCC
T ss_pred             EECCCCCCcceeeEeecCCC------CceEEEEEcCCCCEEEEEcCC-----cEEEEEeCCCceEEEeeec
Confidence            77765432  1122221111      112233333456777777533     3567777766666555543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.63  E-value=0.55  Score=49.03  Aligned_cols=192  Identities=9%  Similarity=-0.026  Sum_probs=97.2

Q ss_pred             cceEEEEECCCCeEE--EeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCC------C--eEEEe
Q 012184           78 SMIVRFIDLETNLCG--VMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLET------M--TWDAV  145 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~--~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t------~--~W~~~  145 (469)
                      ...++++++.+....  .+. .+ ...+....+...- ++ +|++.......  ..++++++|+.+      .  .+..+
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~-~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCA-EF-PDEPKWMGGAELSDDGRYVLLSIREGCD--PVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEE-CC-TTCTTCEEEEEECTTSCEEEEEEECSSS--SCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             CCEEEEEECCCCcccceEEe-cc-CCCCeEEEEEEEcCCCCEEEEEEEccCC--CccEEEEEECcccccccCCccceEEe
Confidence            455999999887632  222 11 1112222222222 34 45544332211  257899999876      4  57776


Q ss_pred             eeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC---ceEeeeecCCCCCCCcceEEEEE-CCEEEEE
Q 012184          146 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITI-DENWYIV  221 (469)
Q Consensus       146 ~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~  221 (469)
                      ...    .. ........+++.||+.+..+.  ....++++|+.+.   .|..+..  ..+. .....++.. ++.+++.
T Consensus       283 ~~~----~~-~~~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~--~~~~-~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          283 IDN----FE-GEYDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVP--EHEK-DVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             ECS----SS-SCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEEC--CCSS-CEEEEEEEETTTEEEEE
T ss_pred             eCC----CC-cEEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccC--CCCC-CeEEEEEEEcCCEEEEE
Confidence            521    11 112223334667888765432  2357999999875   5887642  1111 122234445 5677766


Q ss_pred             ecCCCCCCcceEEEEECCCCc-EEEeccCCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECCCCC
Q 012184          222 GGGDNNNGCQETIVLNMTKLA-WSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       222 GG~~~~~~~~d~~~~d~~~~~-W~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      ...+   ....++++|+.++. ...+..   +.     + .+..+...++ ..+++. ..+......+|.||+.+..
T Consensus       353 ~~~~---g~~~l~~~~~~~g~~~~~l~~---~~-----~-~v~~~~~s~d~~~l~~~-~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          353 YLHD---VKNTLQLHDLATGALLKIFPL---EV-----G-SVVGYSGQKKDTEIFYQ-FTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEET---TEEEEEEEETTTCCEEEEECC---CS-----S-EEEEEECCTTCSEEEEE-EECSSCCCEEEEEETTSSS
T ss_pred             EEEC---CEEEEEEEECCCCCEEEecCC---CC-----c-eEEEEecCCCCCEEEEE-EeCCCCCCEEEEEECCCCc
Confidence            5432   24578999985544 344431   11     1 2222333332 333332 2223335679999987765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.59  E-value=0.19  Score=46.62  Aligned_cols=147  Identities=15%  Similarity=0.054  Sum_probs=70.6

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+.++|+.+++....-..+                .....+.++..  ++.+|+.+..      ...+++||+.+++-..
T Consensus        22 ~v~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B           22 NLHVVDVASDTVYKSCVMP----------------DKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             EEEEEETTTTEEEEEEECS----------------SCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEE
T ss_pred             eEEEEECCCCcEEEEEecC----------------CCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcEEE
Confidence            7899999988765433331                10012233322  4457777532      2349999999987654


Q ss_pred             eecCCCCCC--CCcceEEEEE-CC-EEEEEecc--CCCCC---ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184           94 METSGKVPV--ARGGHSVTLV-GS-RLIIFGGE--DRSRK---LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA  164 (469)
Q Consensus        94 ~~~~g~~p~--~r~~~~~~~~-~~-~lyi~GG~--~~~~~---~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~  164 (469)
                      ....+..|.  ...-+.++.. ++ .||+.+..  .....   ..+.+++||+.++.-........  .++.-.++....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~  157 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAAD  157 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECT
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECC
Confidence            332111111  1111222322 34 45554321  00000   13579999988743211100011  122233344444


Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  194 (469)
                      ++++|+.+        ++++++|+.+.+-.
T Consensus       158 dg~l~~~~--------~~i~~~d~~~~~~~  179 (349)
T 1jmx_B          158 DGSLYVAG--------PDIYKMDVKTGKYT  179 (349)
T ss_dssp             TSCEEEES--------SSEEEECTTTCCEE
T ss_pred             CCcEEEcc--------CcEEEEeCCCCcee
Confidence            55677632        24888998776643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.57  E-value=0.27  Score=47.43  Aligned_cols=187  Identities=11%  Similarity=0.055  Sum_probs=91.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.||.+..      +..||+.+..-...     +........++.+  ++..++.|+.+      ..+.+||+.+
T Consensus       161 ~~~~l~sgs~D~~------i~iwd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~  223 (410)
T 1vyh_C          161 SGKLLASCSADMT------IKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQT  223 (410)
T ss_dssp             TSSEEEEEETTSC------CCEEETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEeCCCe------EEEEeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCC
Confidence            5667777775432      66778776543221     1111122233333  34566666644      3488999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE------
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT------  213 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~------  213 (469)
                      +.....-. +.   ...-..+....++.+++.|+.+     +.+.++|+.+......- .+ ...  .-.+++.      
T Consensus       224 ~~~~~~~~-~h---~~~v~~~~~~~~g~~l~s~s~D-----~~v~vwd~~~~~~~~~~-~~-h~~--~v~~~~~~~~~~~  290 (410)
T 1vyh_C          224 GYCVKTFT-GH---REWVRMVRPNQDGTLIASCSND-----QTVRVWVVATKECKAEL-RE-HRH--VVECISWAPESSY  290 (410)
T ss_dssp             CCEEEEEE-CC---SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEE-CC-CSS--CEEEEEECCSCGG
T ss_pred             CcEEEEEe-CC---CccEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCceeeEe-cC-CCc--eEEEEEEcCcccc
Confidence            76533221 11   1111122223356677777755     35778888766543211 00 000  0001111      


Q ss_pred             ---------------ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEec
Q 012184          214 ---------------IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG  278 (469)
Q Consensus       214 ---------------~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG  278 (469)
                                     ..+.+++.|+.+     ..+.+||+.+..-.  ..+.+..      ..+..+...+++.+++.||
T Consensus       291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D-----~~i~iwd~~~~~~~--~~~~~h~------~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          291 SSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCL--MTLVGHD------NWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             GGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEE--EEEECCS------SCEEEEEECSSSSCEEEEE
T ss_pred             cchhhhccccccccCCCCCEEEEEeCC-----CeEEEEECCCCceE--EEEECCC------CcEEEEEEcCCCCEEEEEe
Confidence                           124566666643     35888998776422  1222111      1223334455556677777


Q ss_pred             cCCCCCceEEEEECCCC
Q 012184          279 YNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       279 ~~~~~~~~~~~~d~~~~  295 (469)
                      .++    .+.+||+.+.
T Consensus       358 ~D~----~i~vwd~~~~  370 (410)
T 1vyh_C          358 DDK----TLRVWDYKNK  370 (410)
T ss_dssp             TTT----EEEEECCTTS
T ss_pred             CCC----eEEEEECCCC
Confidence            655    4778887554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.56  E-value=0.3  Score=46.35  Aligned_cols=205  Identities=8%  Similarity=0.041  Sum_probs=95.2

Q ss_pred             EEEEEccccCCCCCcceEEEEECCCCe------EEEeecCCCCCCC---CcceEEEEE-----CCEE-EEEeccCCCCCc
Q 012184           64 KLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVPVA---RGGHSVTLV-----GSRL-IIFGGEDRSRKL  128 (469)
Q Consensus        64 ~iy~~GG~~~~~~~~~~~~~~d~~t~~------W~~~~~~g~~p~~---r~~~~~~~~-----~~~l-yi~GG~~~~~~~  128 (469)
                      .+++.|+.++      .+..||+.++.      +..+..   .+..   ..-.+++..     ++.. ++.|+.+     
T Consensus        82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----  147 (397)
T 1sq9_A           82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----  147 (397)
T ss_dssp             EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETT-----
T ss_pred             cEEEEEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----
Confidence            7777776532      27788877666      666642   1111   112223333     3445 6776654     


Q ss_pred             cCcEEEEECCC------Ce---EE---Eeee--CCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184          129 LNDVHFLDLET------MT---WD---AVEV--TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       129 ~~~v~~~d~~t------~~---W~---~~~~--~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  194 (469)
                       ..+.+||+.+      ..   |.   .+..  .........-.++....++ +++.|+.+     ..+.+||+.+..-.
T Consensus       148 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~  220 (397)
T 1sq9_A          148 -GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPL  220 (397)
T ss_dssp             -SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEE
T ss_pred             -CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCcee
Confidence             2477777665      21   11   1110  0000112222344444466 77776644     46899999876543


Q ss_pred             eeeecCC-CC-CCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEE-eccCC--CCCCCCC--CCcceEEEE
Q 012184          195 QPEIKGD-LV-TGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVK--GRNPLAS--EGLSVCSAI  266 (469)
Q Consensus       195 ~~~~~~~-~p-~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~--~~~p~~r--~~~s~~~~~  266 (469)
                      ..-.... .+ ....-.+++.. ++.+++.|+.++  ....+.+||+.+..-.. +....  ...+...  ....+..+.
T Consensus       221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             EEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred             EEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence            3221100 10 01112223322 456677766431  11468899987664322 21100  0000000  112333444


Q ss_pred             EcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          267 IEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       267 ~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      ..+++.+++.|+.++    .+.+||+.+.
T Consensus       299 ~~~~~~~l~~~~~dg----~i~iwd~~~~  323 (397)
T 1sq9_A          299 FNDSGETLCSAGWDG----KLRFWDVKTK  323 (397)
T ss_dssp             ECSSSSEEEEEETTS----EEEEEETTTT
T ss_pred             ECCCCCEEEEEeCCC----eEEEEEcCCC
Confidence            455556677777554    5888888654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.54  E-value=0.62  Score=44.92  Aligned_cols=222  Identities=15%  Similarity=0.121  Sum_probs=107.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .|.++|..+++-..+-...                .....-.++.+  ++..++.|+.++      .+..+|+.+++-..
T Consensus       126 tV~lWd~~tg~~~~~~~~~----------------~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~  183 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQME----------------QPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLR  183 (420)
T ss_dssp             EEEEEETTTCCEEEEEECC----------------STTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEEec----------------CCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEE
Confidence            6888899888766554431                11112233333  566777776543      28899998886443


Q ss_pred             eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184           94 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  173 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG  173 (469)
                      ..   ....  ....+...++.+++.|+.+.      .+..+|..+.........+.   ......+....++..++.|+
T Consensus       184 ~~---~~h~--~~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h---~~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          184 NM---TSHS--ARVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             EE---CCCS--SCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEEE
T ss_pred             EE---eCCC--CceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEeccc---ccceeeeeecCCCCeeeeee
Confidence            32   1122  22334455667777776543      36777766544332221111   11111222223455666666


Q ss_pred             CCCCcccCcEEEEECCCCce--EeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccC
Q 012184          174 CSHSIFFNDLHVLDLQTNEW--SQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  249 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~W--~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~  249 (469)
                      .+     +.+.+++..+..-  ..+.....  ....-.+++..  +..+++.+|...+   ..+.+||+.+..-......
T Consensus       250 ~D-----~~v~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~~  319 (420)
T 4gga_A          250 ND-----NLVNVWPSAPGEGGWVPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDA  319 (420)
T ss_dssp             TT-----SCEEEEESSCCSSCSCCSEEECC--CSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEEC
T ss_pred             cc-----ccceEEeeccccccceeeeeecc--cCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeecc
Confidence            44     3577777765431  11111101  11111122222  3456555543222   2577889988764432211


Q ss_pred             CCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCC
Q 012184          250 KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       250 ~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .         .........+ ...+++.+|..   .+.+.+||..+.
T Consensus       320 ~---------~~v~~~~~~~~~~~lv~~sg~~---d~~I~iwd~~~~  354 (420)
T 4gga_A          320 H---------SQVCSILWSPHYKELISGHGFA---QNQLVIWKYPTM  354 (420)
T ss_dssp             S---------SCEEEEEEETTTTEEEEEECTT---TCCEEEEETTTC
T ss_pred             c---------cceeeeeecCCCCeEEEEEecC---CCEEEEEECCCC
Confidence            1         1122222222 45666655542   234888887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.53  E-value=0.52  Score=43.97  Aligned_cols=192  Identities=16%  Similarity=0.085  Sum_probs=94.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.||.+      ..+..||+.+..  ....... .............-++. ++.|+.+      ..+.+||+.+
T Consensus       108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~  173 (340)
T 1got_B          108 SGNYVACGGLD------NICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIET  173 (340)
T ss_dssp             TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECC------CcEEEEECCC
Confidence            55666677643      237888887652  1111100 00111111111112455 4455433      3488999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      ......- .+   ....-.++....++.+++.|+.+     ..+.++|+.+..-...- .+   ....-.+++.. ++.+
T Consensus       174 ~~~~~~~-~~---h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~~~~~~-~~---h~~~v~~v~~~p~~~~  240 (340)
T 1got_B          174 GQQTTTF-TG---HTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGMCRQTF-TG---HESDINAICFFPNGNA  240 (340)
T ss_dssp             TEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEEEEE-CC---CSSCEEEEEECTTSSE
T ss_pred             CcEEEEE-cC---CCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCeeEEEE-cC---CcCCEEEEEEcCCCCE
Confidence            8754332 11   11112233333456677777755     35888998776533211 11   11111122322 4567


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      ++.|+.++     .+.+||+.+..-...  .....    ....+..+...+++.+++.|+.++    .+.+||+.+.
T Consensus       241 l~s~s~d~-----~v~iwd~~~~~~~~~--~~~~~----~~~~v~~~~~s~~g~~l~~g~~d~----~i~vwd~~~~  302 (340)
T 1got_B          241 FATGSDDA-----TCRLFDLRADQELMT--YSHDN----IICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA  302 (340)
T ss_dssp             EEEEETTS-----CEEEEETTTTEEEEE--ECCTT----CCSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC
T ss_pred             EEEEcCCC-----cEEEEECCCCcEEEE--EccCC----cccceEEEEECCCCCEEEEECCCC----eEEEEEcccC
Confidence            77777432     477889877643221  11110    112334445556667788887654    4888887543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.52  E-value=0.36  Score=46.30  Aligned_cols=192  Identities=11%  Similarity=0.058  Sum_probs=96.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+..||+.++.-....     ........++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~  170 (420)
T 3vl1_A          108 QMRRFILGTTEG------DIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKD  170 (420)
T ss_dssp             SSCEEEEEETTS------CEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEECCC------CEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCC
Confidence            667777776432      3888998877644332     111122223333  45566666643      3488999887


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE------
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT------  213 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~------  213 (469)
                      .+-...-. +   ....-.++....++..++.|+.+     ..+.+||+.+.+-.........+. ..-.+++.      
T Consensus       171 ~~~~~~~~-~---h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          171 GSNPRTLI-G---HRATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTIHTFNRKENPH-DGVNSIALFVGTDR  240 (420)
T ss_dssp             CCCCEEEE-C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECBTTBTT-CCEEEEEEEECCCS
T ss_pred             CcCceEEc-C---CCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCceeEEeecCCCCC-CCccEEEEecCCcc
Confidence            64222110 1   11112233333455566677654     358888988765332211100011 11111111      


Q ss_pred             ----------------ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcE-EEEE
Q 012184          214 ----------------IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH-LVAF  276 (469)
Q Consensus       214 ----------------~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~-l~v~  276 (469)
                                      -++.+++.|+.+     ..+.+||+.+..-....  ...     ....+..+...+++. +++.
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~-----~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAGHVS-----GVITVHNVFSKEQTIQL--PSK-----FTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEEETT-----SCEEEEETTTCCEEEEE--CCT-----TSSCEEEEEECSSCTTEEEE
T ss_pred             eeeecccCcccceEEcCCCCEEEEEcCC-----CeEEEEECCCCceeEEc--ccc-----cCCCceeEEEeCCCCCEEEE
Confidence                            145677776643     24789998776532211  110     112233444455444 7777


Q ss_pred             eccCCCCCceEEEEECCCCC
Q 012184          277 GGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       277 GG~~~~~~~~~~~~d~~~~~  296 (469)
                      |+.++    .+.+||+.+..
T Consensus       309 g~~dg----~i~vwd~~~~~  324 (420)
T 3vl1_A          309 GYENG----MLAQWDLRSPE  324 (420)
T ss_dssp             EETTS----EEEEEETTCTT
T ss_pred             EeCCC----eEEEEEcCCCc
Confidence            77654    58889987653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.52  E-value=0.22  Score=46.07  Aligned_cols=185  Identities=10%  Similarity=0.026  Sum_probs=88.8

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCc-EEEEECCCCe-EEEeeeCCCCCCCC
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLND-VHFLDLETMT-WDAVEVTQTPPAPR  155 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~-v~~~d~~t~~-W~~~~~~g~~p~~r  155 (469)
                      .+++||+.++........+..     -+.++.. ++ .||+.+..      .+. +.+|++.... ...... ...+...
T Consensus       109 ~i~v~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~------~~~~i~~~~~~~~g~~~~~~~-~~~~~~~  176 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIPYD-----AVGIAISPNGNGLILIDRS------SANTVRRFKIDADGVLFDTGQ-EFISGGT  176 (331)
T ss_dssp             EEEEEETTTTEEEEEEECCTT-----EEEEEECTTSSCEEEEEET------TTTEEEEEEECTTCCEEEEEE-EEECSSS
T ss_pred             cEEEEECCCCCeEEEEECCCC-----ccceEECCCCCEEEEEecC------CCceEEEEEECCCCcEeecCC-ccccCCC
Confidence            599999999886554422211     1333333 33 57766542      234 6667655422 111100 0011111


Q ss_pred             CCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCce---EeeeecCCCCCCCcceEEEEE-CCE-EEEEecCCCCCC
Q 012184          156 YDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEW---SQPEIKGDLVTGRAGHAGITI-DEN-WYIVGGGDNNNG  229 (469)
Q Consensus       156 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W---~~~~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~  229 (469)
                      ....++...++ ++|+.+..     .+.+.+||+.+.+.   ...-     +.+.....++.. +++ +|+....     
T Consensus       177 ~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~-----  241 (331)
T 3u4y_A          177 RPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAV-----GTNNLPGTIVVSRDGSTVYVLTES-----  241 (331)
T ss_dssp             SEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEE-----ECSSCCCCEEECTTSSEEEEECSS-----
T ss_pred             CccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeec-----cCCCCCceEEECCCCCEEEEEEcC-----
Confidence            12333333344 57776533     25699999987775   2211     111222233333 344 6665431     


Q ss_pred             cceEEEEECCCCcEEEeccCCCCCC-CCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCC
Q 012184          230 CQETIVLNMTKLAWSILTSVKGRNP-LASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       230 ~~d~~~~d~~~~~W~~~~~~~~~~p-~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .+.++++|+.+.....+...+.... .++..+....+...+ +..||+.+..+    +.+.+||+...
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----~~v~v~d~~~~  305 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS----RELKVFTISGK  305 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT----TEEEEEETTSC
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC----CcEEEEEecCC
Confidence            3458899999887755443322110 011111111123333 45676665533    35888998654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.50  E-value=0.083  Score=56.04  Aligned_cols=183  Identities=9%  Similarity=0.008  Sum_probs=102.5

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+++||+.+++|.........           . .....-.+++.. ++.|++.. . ..+     +++||+.++++..+
T Consensus       470 Gl~~~~~~~~~~~~~~~~~~~-----------~-~~~~~i~~i~~d~~g~lWigt-~-~~G-----l~~~~~~~~~~~~~  530 (781)
T 3v9f_A          470 GVFVIDLASKKVIHHYDTSNS-----------Q-LLENFVRSIAQDSEGRFWIGT-F-GGG-----VGIYTPDMQLVRKF  530 (781)
T ss_dssp             EEEEEESSSSSCCEEECTTTS-----------S-CSCSCEEEEEECTTCCEEEEE-S-SSC-----EEEECTTCCEEEEE
T ss_pred             ceEEEeCCCCeEEecccCccc-----------c-cccceeEEEEEcCCCCEEEEE-c-CCC-----EEEEeCCCCeEEEc
Confidence            688899999988877643210           0 111112222222 55666642 2 112     89999999999988


Q ss_pred             ecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcE-EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184           95 ETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDV-HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  172 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v-~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G  172 (469)
                      .....+|..... +++. -++.|++-..        +-+ ++||+.+.++........+|... .++++...++.|++.+
T Consensus       531 ~~~~~l~~~~i~-~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          531 NQYEGFCSNTIN-QIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWAST  600 (781)
T ss_dssp             CTTTTCSCSCEE-EEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEEC
T ss_pred             cCCCCCCCCeeE-EEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEc
Confidence            643223322221 2222 2456776421        236 89999998887775433344332 2455555567788754


Q ss_pred             cCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce-EEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          173 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-AGITIDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       173 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      .       +-+.+||+.+.++........++...+.. +++...+..+.|||.      +-+..||+..
T Consensus       601 ~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~------~Gl~~f~p~~  656 (781)
T 3v9f_A          601 N-------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSI------NGLCFFNPDI  656 (781)
T ss_dssp             S-------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEET------TEEEEECSCC
T ss_pred             C-------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECC------CceEEEChhh
Confidence            2       45899999999888765433344443332 344443444556663      2355666643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.48  E-value=0.49  Score=43.05  Aligned_cols=224  Identities=12%  Similarity=-0.079  Sum_probs=111.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .++.||+.++ ...+...                 .. ..++++.. ++.||+....      ...+++||+.+++...+
T Consensus        51 ~i~~~~~~~~-~~~~~~~-----------------~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~  105 (296)
T 3e5z_A           51 RTWAWSDDGQ-LSPEMHP-----------------SH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGGEWESI  105 (296)
T ss_dssp             EEEEEETTSC-EEEEESS-----------------CS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEE
T ss_pred             EEEEEECCCC-eEEEECC-----------------CC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEE
Confidence            6788888877 5444332                 11 12233332 5677766421      13499999999988776


Q ss_pred             ecCC-CCCCCCcceEEEEECCEEEEE----eccC------C-CCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEE
Q 012184           95 ETSG-KVPVARGGHSVTLVGSRLIIF----GGED------R-SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL  162 (469)
Q Consensus        95 ~~~g-~~p~~r~~~~~~~~~~~lyi~----GG~~------~-~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~  162 (469)
                      .... ..+..+....++.-++.||+.    |...      . .......+++|++. +....+..  ....+   ..++.
T Consensus       106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~  179 (296)
T 3e5z_A          106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAF  179 (296)
T ss_dssp             ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEE
T ss_pred             eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEE
Confidence            4210 111111122222235678875    4311      0 01113579999987 55554431  11111   23333


Q ss_pred             EcCcEEEEEecCCCCcccCcEEEEECC-CCce-EeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECC
Q 012184          163 HANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEW-SQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       163 ~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W-~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      ..++.+++....     .+.+++|++. ++.. ...... ...... ...++.. ++++|+..+       +.+.+||+.
T Consensus       180 s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~-p~~i~~d~~G~l~v~~~-------~~v~~~~~~  245 (296)
T 3e5z_A          180 LPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHF-TVEPGK-TDGLRVDAGGLIWASAG-------DGVHVLTPD  245 (296)
T ss_dssp             CTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEE-CCSSSC-CCSEEEBTTSCEEEEET-------TEEEEECTT
T ss_pred             CCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEe-eCCCCC-CCeEEECCCCCEEEEcC-------CeEEEECCC
Confidence            335555544322     2578999986 4555 222211 111111 1123332 567887752       368899998


Q ss_pred             CCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184          240 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       240 ~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~  298 (469)
                      ......+.. +.. |      +.+++.-.....||+...      ..+|+|++.+..-.
T Consensus       246 g~~~~~~~~-~~~-~------~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~~~  290 (296)
T 3e5z_A          246 GDELGRVLT-PQT-T------SNLCFGGPEGRTLYMTVS------TEFWSIETNVRGLE  290 (296)
T ss_dssp             SCEEEEEEC-SSC-C------CEEEEESTTSCEEEEEET------TEEEEEECSCCBCC
T ss_pred             CCEEEEEEC-CCC-c------eeEEEECCCCCEEEEEcC------CeEEEEEccccccc
Confidence            655444432 111 1      222222112346776542      25999999776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.58  Score=43.53  Aligned_cols=199  Identities=12%  Similarity=0.099  Sum_probs=90.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++..++.|+.+      ..+..||+.++.-.....   .+.+  -.+++.. ++..++.++.+... ....+.+||+.+.
T Consensus        85 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~~~--v~~~~~~~~~~~l~~~~~~~~~-~~g~i~~~d~~~~  152 (369)
T 3zwl_B           85 FTKYCVTGSAD------YSIKLWDVSNGQCVATWK---SPVP--VKRVEFSPCGNYFLAILDNVMK-NPGSINIYEIERD  152 (369)
T ss_dssp             TSSEEEEEETT------TEEEEEETTTCCEEEEEE---CSSC--EEEEEECTTSSEEEEEECCBTT-BCCEEEEEEEEEC
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEee---cCCC--eEEEEEccCCCEEEEecCCccC-CCCEEEEEEecCC
Confidence            45566666643      248899998887554432   1111  1112222 34455555443111 2345777776543


Q ss_pred             e----EEEeeeCC--CC--CCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCC-CceEeeeecCCCCCCCcceE
Q 012184          141 T----WDAVEVTQ--TP--PAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHA  210 (469)
Q Consensus       141 ~----W~~~~~~g--~~--p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~  210 (469)
                      .    +.......  ..  .........+.+ .++..++.|+.+     ..+.+||+.+ ..-.... . .  ....-.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~-~-~--~~~~v~~  223 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSI-D-L--HEKSISD  223 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEE-E-C--CSSCEEE
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEE-e-c--CCCceeE
Confidence            2    22111000  00  000012222223 355566666644     4689999887 3322211 1 1  1111222


Q ss_pred             EEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-------
Q 012184          211 GITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-------  282 (469)
Q Consensus       211 ~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-------  282 (469)
                      ++.. ++.+++.|+.+     ..+.+||+.+......-.  .       ......+...+++.++++|+.++.       
T Consensus       224 ~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  289 (369)
T 3zwl_B          224 MQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKKYE--T-------DCPLNTAVITPLKEFIILGGGQEAKDVTTTS  289 (369)
T ss_dssp             EEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE--C-------SSCEEEEEECSSSSEEEEEECCC--------
T ss_pred             EEECCCCCEEEEecCC-----ceEEEEECCCCceeeeec--C-------CCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence            3332 45566666532     368899998766443222  1       112333444454555555554331       


Q ss_pred             ---CCceEEEEECCCC
Q 012184          283 ---YNNEVFVMRLKPR  295 (469)
Q Consensus       283 ---~~~~~~~~d~~~~  295 (469)
                         ....+.+||....
T Consensus       290 ~~~~~~~i~~~d~~~~  305 (369)
T 3zwl_B          290 ANEGKFEARFYHKIFE  305 (369)
T ss_dssp             -----CEEEEEETTTC
T ss_pred             cCCCcceeEEEecCCC
Confidence               1125677776544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.39  E-value=0.084  Score=51.51  Aligned_cols=189  Identities=10%  Similarity=0.053  Sum_probs=95.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ++.+++.|+.++.      |.++|+.+..-..+..   .......-.++.+   ++.+++-|+.+.      .|.++|+.
T Consensus       131 ~~~~lasGs~dg~------i~lWd~~~~~~~~~~~---~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGGD------IMLWNFGIKDKPTFIK---GIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTSC------EEEECSSCCSCCEEEC---CCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETT
T ss_pred             CCCEEEEEeCCCE------EEEEECCCCCceeEEE---ccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeecc
Confidence            4567777775432      8888887765433321   1111112223333   345666676543      38889998


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE---C
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---D  215 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~  215 (469)
                      +..........  .......++....++.+++.|+.+     ..|.++|+.+..-..+.      .....-..+.+   +
T Consensus       196 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~~------~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          196 GNILRVFASSD--TINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKELWNLR------MHKKKVTHVALNPCC  262 (435)
T ss_dssp             SCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCBCCCSB------CCSSCEEEEEECTTC
T ss_pred             CCceeEEeccC--CCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcceeEEEe------cccceEEeeeecCCC
Confidence            88766554321  122222334444466677777754     35888898654322211      11111122222   2


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCc--ceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGL--SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~--s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      +.+++.|+.++     .+.+||+.+..-..  .+     ....+|  .+..+...+++..++.|+.++    .+.+||+.
T Consensus       263 ~~~~~s~s~d~-----~v~iwd~~~~~~~~--~~-----~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd~~  326 (435)
T 4e54_B          263 DWFLATASVDQ-----TVKIWDLRQVRGKA--SF-----LYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYSAS  326 (435)
T ss_dssp             SSEEEEEETTS-----BCCEEETTTCCSSS--CC-----SBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEESS
T ss_pred             ceEEEEecCcc-----eeeEEecccccccc--eE-----EEeeeccccccceeECCCCCeeEEEcCCC----EEEEEECC
Confidence            34677776433     35677876543111  00     011122  233333445556777777665    37777775


Q ss_pred             C
Q 012184          294 P  294 (469)
Q Consensus       294 ~  294 (469)
                      .
T Consensus       327 ~  327 (435)
T 4e54_B          327 Q  327 (435)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.37  E-value=0.63  Score=43.14  Aligned_cols=153  Identities=10%  Similarity=0.048  Sum_probs=80.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeec-CCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET-SGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~-~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.+|+.+...     ...++.||+.+++-..... .+..|   .+.....-++.||+...       .+.+++||+.+.
T Consensus       152 g~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~  216 (353)
T 3vgz_A          152 TNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMS---TGLALDSEGKRLYTTNA-------DGELITIDTADN  216 (353)
T ss_dssp             TTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTC---CCCEEETTTTEEEEECT-------TSEEEEEETTTT
T ss_pred             CCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCcc---ceEEECCCCCEEEEEcC-------CCeEEEEECCCC
Confidence            56677775322     2349999999887544432 22111   11111112345666532       346889999988


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  217 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  217 (469)
                      +-......+..........++... ++.+|+....     .+.+++||+.+.+.......   +.+   ..++..  ++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~---~~~---~~~~~s~dg~~  285 (353)
T 3vgz_A          217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAA---PES---LAVLFNPARNE  285 (353)
T ss_dssp             EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEEC---SSC---CCEEEETTTTE
T ss_pred             eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEc---CCC---ceEEECCCCCE
Confidence            755433222211111122233333 4557665432     26799999988775443211   222   123332  345


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      +|+.+..     .+.+.+||+.+.....
T Consensus       286 l~v~~~~-----~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          286 AYVTHRQ-----AGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             EEEEETT-----TTEEEEEETTTTEEEE
T ss_pred             EEEEECC-----CCeEEEEECCCCeEEE
Confidence            7776542     2478999998876544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.36  E-value=0.38  Score=42.91  Aligned_cols=191  Identities=10%  Similarity=0.000  Sum_probs=97.3

Q ss_pred             eeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEE
Q 012184           57 CMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        57 ~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      +++.. ++.||+...  .     ..+++||+.+.....+...    ....-++++.- +++||+....      .+.+++
T Consensus        71 ~i~~~~~g~l~v~~~--~-----~~i~~~d~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~------~~~i~~  133 (270)
T 1rwi_B           71 GLAVDGAGTVYVTDF--N-----NRVVTLAAGSNNQTVLPFD----GLNYPEGLAVDTQGAVYVADRG------NNRVVK  133 (270)
T ss_dssp             CEEECTTCCEEEEET--T-----TEEEEECTTCSCCEECCCC----SCSSEEEEEECTTCCEEEEEGG------GTEEEE
T ss_pred             eeEECCCCCEEEEcC--C-----CEEEEEeCCCceEeeeecC----CcCCCcceEECCCCCEEEEECC------CCEEEE
Confidence            34433 567887754  1     2489999887765444311    11112233333 4678876432      345888


Q ss_pred             EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184          135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  214 (469)
Q Consensus       135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  214 (469)
                      |+..+........ ...   ..-..++...++.+|+....     .+.+++||+.+..-..... ...   .....++..
T Consensus       134 ~~~~~~~~~~~~~-~~~---~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~d  200 (270)
T 1rwi_B          134 LAAGSKTQTVLPF-TGL---NDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPF-TDI---TAPWGIAVD  200 (270)
T ss_dssp             ECTTCCSCEECCC-CSC---CSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCC-SSC---CSEEEEEEC
T ss_pred             EECCCceeEeecc-ccC---CCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeecc-cCC---CCceEEEEC
Confidence            8876655433221 111   12234444445678886542     2568999987765433211 111   222233433


Q ss_pred             -CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          215 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       215 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                       ++.+|+....     .+.+.+||+....-..... ..       ......+.+++++.||+....+    +.+.+|++.
T Consensus       201 ~~g~l~v~~~~-----~~~v~~~~~~~~~~~~~~~-~~-------~~~p~~i~~~~~g~l~v~~~~~----~~v~~~~~~  263 (270)
T 1rwi_B          201 EAGTVYVTEHN-----TNQVVKLLAGSTTSTVLPF-TG-------LNTPLAVAVDSDRTVYVADRGN----DRVVKLTSL  263 (270)
T ss_dssp             TTCCEEEEETT-----TSCEEEECTTCSCCEECCC-CS-------CSCEEEEEECTTCCEEEEEGGG----TEEEEECCC
T ss_pred             CCCCEEEEECC-----CCcEEEEcCCCCcceeecc-CC-------CCCceeEEECCCCCEEEEECCC----CEEEEEcCC
Confidence             3478877542     2358899987654332211 00       0122334455555788776543    357777764


Q ss_pred             C
Q 012184          294 P  294 (469)
Q Consensus       294 ~  294 (469)
                      .
T Consensus       264 ~  264 (270)
T 1rwi_B          264 E  264 (270)
T ss_dssp             G
T ss_pred             C
Confidence            3

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.36  E-value=0.69  Score=43.46  Aligned_cols=186  Identities=12%  Similarity=0.074  Sum_probs=91.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C-CEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ++..++.|+.+.      .+..+|+.++.-...-   ....  ..-.++.+  + ..+++-|+.+.      .|.+||+.
T Consensus       138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~---~~h~--~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~  200 (344)
T 4gqb_B          138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY---RAHA--AQVTCVAASPHKDSVFLSCSEDN------RILLWDTR  200 (344)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCS--SCEEEEEECSSCTTEEEEEETTS------CEEEEETT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cCcC--CceEEEEecCCCCCceeeecccc------cccccccc
Confidence            566777776543      2889999888643322   1111  11222233  2 34777776543      38889998


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEE--cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D  215 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~  215 (469)
                      +.+-...-   ...........+.+  .++.+++.|+.+     ..|.+||+.+.+-...- .+   ....-.+++.. +
T Consensus       201 ~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~~~~~-~~---h~~~v~~v~fsp~  268 (344)
T 4gqb_B          201 CPKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSCVLSS-AV---HSQCVTGLVFSPH  268 (344)
T ss_dssp             SSSCEEEC---C----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--CCEEE-EC---CSSCEEEEEECSS
T ss_pred             ccceeeee---ecceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcEEEEE-cC---CCCCEEEEEEccC
Confidence            77643321   11111111122222  245577777654     35888998765422110 01   11111222322 2


Q ss_pred             -CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184          216 -ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       216 -~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                       ..+++.|+.++     .+.+||+.+..-..+   .+..      ..+..+...+ +..+++.||.++.    +.++++.
T Consensus       269 g~~~lasgs~D~-----~i~vwd~~~~~~~~~---~~H~------~~V~~v~~sp~~~~llas~s~D~~----v~~w~v~  330 (344)
T 4gqb_B          269 SVPFLASLSEDC-----SLAVLDSSLSELFRS---QAHR------DFVRDATWSPLNHSLLTTVGWDHQ----VVHHVVP  330 (344)
T ss_dssp             SSCCEEEEETTS-----CEEEECTTCCEEEEE---CCCS------SCEEEEEECSSSTTEEEEEETTSC----EEEEECC
T ss_pred             CCeEEEEEeCCC-----eEEEEECCCCcEEEE---cCCC------CCEEEEEEeCCCCeEEEEEcCCCe----EEEEECC
Confidence             35666666432     477889887754332   1111      1233333344 3467878887764    6666664


Q ss_pred             C
Q 012184          294 P  294 (469)
Q Consensus       294 ~  294 (469)
                      +
T Consensus       331 ~  331 (344)
T 4gqb_B          331 T  331 (344)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.34  E-value=0.8  Score=47.75  Aligned_cols=208  Identities=13%  Similarity=0.075  Sum_probs=102.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCC----------CCcc
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRS----------RKLL  129 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~----------~~~~  129 (469)
                      +++.++|+....+. ....++++|+.++........+    ..  ...+.+  +++.++++.....          ....
T Consensus       135 Dg~~la~~~~~~G~-~~~~i~v~d~~tg~~~~~~~~~----~~--~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          135 DGEYFAYGLSASGS-DWVTIKFMKVDGAKELPDVLER----VK--FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             TSSEEEEEEEETTC-SCEEEEEEETTTTEEEEEEEEE----EC--SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             CCCEEEEEEcCCCC-ceEEEEEEECCCCCCCcccccC----cc--cceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence            55555554332221 2236999999999987654211    11  122233  4443444433221          0234


Q ss_pred             CcEEEEECCCCeEE--EeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC------C--ceEeeeec
Q 012184          130 NDVHFLDLETMTWD--AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------N--EWSQPEIK  199 (469)
Q Consensus       130 ~~v~~~d~~t~~W~--~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~------~--~W~~~~~~  199 (469)
                      ..++++++.+....  .+. . ....+........-.|++.+++.........++++++|+.+      .  .+..+...
T Consensus       208 ~~v~~~~l~t~~~~~~~v~-~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCA-E-FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEE-C-CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CEEEEEECCCCcccceEEe-c-cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence            56999999887632  221 1 11112222333333355444444332222257899999876      4  57766421


Q ss_pred             CCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCC---cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEE
Q 012184          200 GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL---AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAF  276 (469)
Q Consensus       200 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~---~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~  276 (469)
                          ...........++.+|+.+..+  .....++++|+.+.   .|..+.....       ...+..+...+++++++.
T Consensus       286 ----~~~~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          286 ----FEGEYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVPEHE-------KDVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             ----SSSCEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEECCCS-------SCEEEEEEEETTTEEEEE
T ss_pred             ----CCcEEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccCCCC-------CCeEEEEEEEcCCEEEEE
Confidence                1111122333467788776532  22457999999775   5877643211       011222222234566666


Q ss_pred             eccCCCCCceEEEEECC
Q 012184          277 GGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       277 GG~~~~~~~~~~~~d~~  293 (469)
                      ...++  ...++++++.
T Consensus       353 ~~~~g--~~~l~~~~~~  367 (710)
T 2xdw_A          353 YLHDV--KNTLQLHDLA  367 (710)
T ss_dssp             EEETT--EEEEEEEETT
T ss_pred             EEECC--EEEEEEEECC
Confidence            55443  3456777763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.32  E-value=0.19  Score=50.81  Aligned_cols=193  Identities=16%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             eEEEEECCCCeEEEeecC-CC-------CCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCC
Q 012184           80 IVRFIDLETNLCGVMETS-GK-------VPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  150 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~-g~-------~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~  150 (469)
                      .+.++|..+.+-...-.. +.       .|.++....+..- +..+|+-. .     ..+.++++|..+..-..+...  
T Consensus       249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~-----~~g~i~vvd~~~~~~l~~~~i--  320 (543)
T 1nir_A          249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-K-----ETGKVLLVNYKDIDNLTVTSI--  320 (543)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-T-----TTTEEEEEECTTSSSCEEEEE--
T ss_pred             eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-C-----CCCeEEEEEecCCCcceeEEe--
Confidence            488889988775443221 11       0122322222222 33444433 2     245699999877432111111  


Q ss_pred             CCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q 012184          151 PPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNN  227 (469)
Q Consensus       151 ~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~  227 (469)
                       +..+.-+.+....++ ++|+.+..     .+.|.++|+.+++-...-..+..|.+..+... ..  ++.+|+.+...  
T Consensus       321 -~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~--  391 (543)
T 1nir_A          321 -GAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG--  391 (543)
T ss_dssp             -ECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS--
T ss_pred             -ccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC--
Confidence             112223344443344 45554322     36788999998875543323444444333222 23  25677765421  


Q ss_pred             CCcceEEEEECCCC-----cEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCC--CCceEEEEECCCCCC
Q 012184          228 NGCQETIVLNMTKL-----AWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGK--YNNEVFVMRLKPRDI  297 (469)
Q Consensus       228 ~~~~d~~~~d~~~~-----~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~--~~~~~~~~d~~~~~w  297 (469)
                        .+.+-++|+.+.     .|+.+..++....    + .+ .+...+ ..+||+-.-.+..  ....+.+||+.+..-
T Consensus       392 --d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~----~-~~-~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          392 --DGSISLIGTDPKNHPQYAWKKVAELQGQGG----G-SL-FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             --SSEEEEEECCTTTCTTTBTSEEEEEECSCS----C-CC-CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             --CceEEEEEeCCCCCchhcCeEEEEEEcCCC----C-ce-EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence              235778887662     3777666543321    1 11 122334 4566653311111  245799999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.31  E-value=0.7  Score=48.02  Aligned_cols=195  Identities=11%  Similarity=0.063  Sum_probs=92.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC--C--EEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG--S--RLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~--~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++..++.|+.+.      .+.++|.....-..+...  ....+....++.+.  +  .+++.|+.+.      .|.+||+
T Consensus       483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~  548 (694)
T 3dm0_A          483 DNRQIVSASRDR------TIKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNL  548 (694)
T ss_dssp             TSSCEEEEETTS------CEEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEET
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEEC
Confidence            455666666432      277777765432233211  11122223334442  1  3555565432      4889999


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  217 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  217 (469)
                      .+......- .+   ....-.+++...++.+++.|+.+     ..|.++|+.+.+-..     .......-++++...+.
T Consensus       549 ~~~~~~~~~-~~---h~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~~~~-----~~~~~~~v~~~~~sp~~  614 (694)
T 3dm0_A          549 SNCKLRSTL-AG---HTGYVSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGKKLY-----SLEANSVIHALCFSPNR  614 (694)
T ss_dssp             TTCCEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SBCEEEETTTTEEEE-----CCBCSSCEEEEEECSSS
T ss_pred             CCCcEEEEE-cC---CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEE-----EecCCCcEEEEEEcCCC
Confidence            877654322 11   11111223333466677777755     357889988765322     11122223344444444


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEeccCCC-----------CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCce
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG-----------RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE  286 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~-----------~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~  286 (469)
                      .+++++.+     ..+.+||+.+..-...-....           +....+....+..+...+++.+++.|+.++    .
T Consensus       615 ~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg----~  685 (694)
T 3dm0_A          615 YWLCAATE-----HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG----V  685 (694)
T ss_dssp             SEEEEEET-----TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS----E
T ss_pred             cEEEEEcC-----CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC----e
Confidence            44444432     247888988765432111000           000011111233344555667778888766    3


Q ss_pred             EEEEECC
Q 012184          287 VFVMRLK  293 (469)
Q Consensus       287 ~~~~d~~  293 (469)
                      +.++++.
T Consensus       686 i~iW~i~  692 (694)
T 3dm0_A          686 IRVWGIG  692 (694)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            6667653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.31  E-value=0.71  Score=43.06  Aligned_cols=166  Identities=14%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      +..||+.++.-...-   .....  ...++.+  ++.+++.|+.+.      .+.+||+.+..-...- .+   ....-.
T Consensus       166 i~~wd~~~~~~~~~~---~~h~~--~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~-~~---h~~~v~  230 (340)
T 1got_B          166 CALWDIETGQQTTTF---TGHTG--DVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTF-TG---HESDIN  230 (340)
T ss_dssp             EEEEETTTTEEEEEE---CCCSS--CEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEE-CC---CSSCEE
T ss_pred             EEEEECCCCcEEEEE---cCCCC--ceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEE-cC---CcCCEE
Confidence            889999888654332   11111  1222223  456777776543      4888998877643321 11   111112


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEE
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      +++...++.+++.|+.+     ..+.+||+.+..-....   ..+........+.+  ++.+++.|+.+     ..+.+|
T Consensus       231 ~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~g~~d-----~~i~vw  297 (340)
T 1got_B          231 AICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTY---SHDNIICGITSVSFSKSGRLLLAGYDD-----FNCNVW  297 (340)
T ss_dssp             EEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE---CCTTCCSCEEEEEECTTSSEEEEEETT-----SEEEEE
T ss_pred             EEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEE---ccCCcccceEEEEECCCCCEEEEECCC-----CeEEEE
Confidence            33333356677777755     35889998776533211   11111122222223  45677777643     357888


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184          237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK  282 (469)
Q Consensus       237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~  282 (469)
                      |+.+..-.  ..+.+..      ..+..+...+++.+++.||.++.
T Consensus       298 d~~~~~~~--~~~~~h~------~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          298 DALKADRA--GVLAGHD------NRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             ETTTCCEE--EEEECCS------SCEEEEEECTTSSCEEEEETTSC
T ss_pred             EcccCcEe--eEeecCC------CcEEEEEEcCCCCEEEEEcCCcc
Confidence            88665422  2222211      12333344456677788887653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.30  E-value=0.094  Score=47.23  Aligned_cols=192  Identities=6%  Similarity=-0.030  Sum_probs=93.5

Q ss_pred             ceEEEEccC-CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .++.+|+.+ +....+....               ........+..-++..+++++....  ....+|.+|..+..-..+
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~  125 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGF---------------ATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLM  125 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTT---------------CCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEEC
T ss_pred             eEEEEeCCCCCCceEecccc---------------ccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEe
Confidence            678888887 6655444321               1111122222225555555543322  234599999888775555


Q ss_pred             ecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE-EEEE
Q 012184           95 ETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVF  171 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~v~  171 (469)
                      ...   . .  ...++.. ++ .|++.++.+.    ...+|.+++.+.....+..   .  +.....+....++. |++.
T Consensus       126 ~~~---~-~--~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~s~dg~~l~~~  190 (297)
T 2ojh_A          126 TKN---L-P--SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTH---G--EGRNDGPDYSPDGRWIYFN  190 (297)
T ss_dssp             CSS---S-S--EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCC---S--SSCEEEEEECTTSSEEEEE
T ss_pred             ecC---C-C--ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEccc---C--CCccccceECCCCCEEEEE
Confidence            421   1 1  2222222 33 4555554332    2357888888777655431   1  11112222223444 4444


Q ss_pred             ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCC------CcceEEEEECCCCcEE
Q 012184          172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNN------GCQETIVLNMTKLAWS  244 (469)
Q Consensus       172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~------~~~d~~~~d~~~~~W~  244 (469)
                      +..+.   ...+|.+++.+.....+.   .  .......++.. ++..+++++.+...      ....++++|+.+....
T Consensus       191 ~~~~~---~~~i~~~~~~~~~~~~~~---~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          191 SSRTG---QMQIWRVRVDGSSVERIT---D--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             ECTTS---SCEEEEEETTSSCEEECC---C--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred             ecCCC---CccEEEECCCCCCcEEEe---c--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence            33232   356888887776665543   1  11111122222 44555555433221      1356999999887766


Q ss_pred             Eec
Q 012184          245 ILT  247 (469)
Q Consensus       245 ~~~  247 (469)
                      .+.
T Consensus       263 ~~~  265 (297)
T 2ojh_A          263 TLF  265 (297)
T ss_dssp             EEE
T ss_pred             eee
Confidence            554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.29  E-value=0.63  Score=42.86  Aligned_cols=184  Identities=13%  Similarity=0.044  Sum_probs=81.9

Q ss_pred             eEEEEECC--CCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCC
Q 012184           80 IVRFIDLE--TNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP  154 (469)
Q Consensus        80 ~~~~~d~~--t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~  154 (469)
                      .+..|++.  ++.+..+...   +....-..++.. ++ .||+.+. .     .+.+.+||+.... ...+.....   .
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~-~-----~~~i~~~d~~~~~~~~~~~~~~~---~  128 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAES---ALPGSLTHISTDHQGQFVFVGSY-N-----AGNVSVTRLEDGLPVGVVDVVEG---L  128 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEE---ECSSCCSEEEECTTSSEEEEEET-T-----TTEEEEEEEETTEEEEEEEEECC---C
T ss_pred             eEEEEEecCCCCceeecccc---ccCCCCcEEEEcCCCCEEEEEec-C-----CCeEEEEECCCCccccccccccC---C
Confidence            36666665  7788766522   111111222222 33 4655543 2     2348888874322 222221111   1


Q ss_pred             CCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCC-CceEeee--ecCCCCCCCcceEEEEE-CC-EEEEEecCCCCC
Q 012184          155 RYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPE--IKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNN  228 (469)
Q Consensus       155 r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~--~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~  228 (469)
                      ...+.++...+ +.+|+.+..+     +.+++||+.+ .+...+.  .. ..+.......++.. ++ .+|+.+..    
T Consensus       129 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~----  198 (343)
T 1ri6_A          129 DGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL----  198 (343)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT----
T ss_pred             CCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC----
Confidence            11233333334 4566654222     4689999887 6665332  11 11111111123332 33 46666532    


Q ss_pred             CcceEEEEECC--CCcEEEe---ccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184          229 GCQETIVLNMT--KLAWSIL---TSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       229 ~~~d~~~~d~~--~~~W~~~---~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                       .+.+.+||+.  +..+..+   ...+....   .......+...+ +..||+.+..+    +.+.+||+.
T Consensus       199 -~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~i~~s~dg~~l~v~~~~~----~~i~v~d~~  261 (343)
T 1ri6_A          199 -NSSVDVWELKDPHGNIECVQTLDMMPENFS---DTRWAADIHITPDGRHLYACDRTA----SLITVFSVS  261 (343)
T ss_dssp             -TTEEEEEESSCTTSCCEEEEEEECSCTTCC---SCCCEEEEEECTTSSEEEEEETTT----TEEEEEEEC
T ss_pred             -CCEEEEEEecCCCCcEEEEeeccccCcccc---ccCCccceEECCCCCEEEEEecCC----CEEEEEEEc
Confidence             2367888884  4444332   22221110   011222334444 34677665432    357778776

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.29  E-value=0.088  Score=44.27  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      ++.+|.+.+.++..++.++..+..++.+...+
T Consensus        47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K   78 (189)
T 2v71_A           47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEK   78 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555544444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.27  E-value=0.61  Score=42.03  Aligned_cols=215  Identities=8%  Similarity=-0.037  Sum_probs=112.6

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+..||+. +.+.......                ....-++++.. ++.||+....      ...+++||+. +....+
T Consensus        37 ~v~~~d~~-~~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~   92 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPT----------------PDAKVMCLTISSDGEVWFTENA------ANKIGRITKK-GIIKEY   92 (299)
T ss_dssp             EEEEECTT-CCEEEEECSS----------------TTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEE
T ss_pred             cEEEEcCC-CCeEEecCCc----------------ccCceeeEEECCCCCEEEeCCC------CCeEEEECCC-CcEEEE
Confidence            57888887 7766554321                11222333332 5678776432      1248999986 556555


Q ss_pred             ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184           95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  173 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG  173 (469)
                      ...   .....-++++.. ++.||+....      .+.+++||+ ++.........   ....-+.++...++.+|+...
T Consensus        93 ~~~---~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           93 TLP---NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEET
T ss_pred             eCC---CcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeC
Confidence            421   111122333333 4678876432      345899998 66665543211   112223444444667887542


Q ss_pred             CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCC
Q 012184          174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR  252 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~  252 (469)
                      .     .+.+++||+ +++...+....   .......++.. ++.+|+....     .+.+.+||+ +.....+.. +..
T Consensus       160 ~-----~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~-~~~  223 (299)
T 2z2n_A          160 Q-----NNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKI-PTP  223 (299)
T ss_dssp             T-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC-SST
T ss_pred             C-----CCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEEC-CCC
Confidence            1     256899999 77766542111   11122233333 4577776432     246889999 666655421 111


Q ss_pred             CCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       253 ~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                            ......+..++++.||+....    .+.+++||++
T Consensus       224 ------~~~~~~i~~~~~g~l~v~~~~----~~~i~~~d~~  254 (299)
T 2z2n_A          224 ------NARPHAITAGAGIDLWFTEWG----ANKIGRLTSN  254 (299)
T ss_dssp             ------TCCEEEEEECSTTCEEEEETT----TTEEEEEETT
T ss_pred             ------CCCceeEEECCCCCEEEeccC----CceEEEECCC
Confidence                  112334445555677776422    2358888873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.27  E-value=0.013  Score=60.18  Aligned_cols=11  Identities=18%  Similarity=0.157  Sum_probs=5.0

Q ss_pred             EEEEECCCCCC
Q 012184          287 VFVMRLKPRDI  297 (469)
Q Consensus       287 ~~~~d~~~~~w  297 (469)
                      +-.+++..+.|
T Consensus       347 L~~L~l~~N~~  357 (597)
T 3oja_B          347 LKNLTLSHNDW  357 (597)
T ss_dssp             CSEEECCSSCE
T ss_pred             CCEEEeeCCCC
Confidence            33445544444

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.23  E-value=0.26  Score=46.81  Aligned_cols=194  Identities=10%  Similarity=0.055  Sum_probs=89.2

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C-CEEEEEeccCCCCCccCcEEEEECCC
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      +.+++.|+.++      .+..||+.+..-...-     ........++.+  + ..+++.|+.++      .+.+||+.+
T Consensus       156 ~~~~~~~~~~~------~v~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~  218 (408)
T 4a11_B          156 HCLVAVGTRGP------KVQLCDLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRR  218 (408)
T ss_dssp             CCEEEEEESSS------SEEEEESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTC
T ss_pred             CcEEEEEcCCC------eEEEEeCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCC
Confidence            34666665432      2888998776532222     111112223333  2 23677776543      388888866


Q ss_pred             Ce--EEEeeeC-C----CC----CCCCCC-ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc
Q 012184          140 MT--WDAVEVT-Q----TP----PAPRYD-HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA  207 (469)
Q Consensus       140 ~~--W~~~~~~-g----~~----p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~  207 (469)
                      ..  ...+... +    ..    ...... .++....++..++.|+.+     +.+.+||+.+..-..............
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~  293 (408)
T 4a11_B          219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKK  293 (408)
T ss_dssp             SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred             CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccc
Confidence            43  1111100 0    00    011111 122233355566666654     358899988765432211111111111


Q ss_pred             --ceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCc
Q 012184          208 --GHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNN  285 (469)
Q Consensus       208 --~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~  285 (469)
                        ........+..+++++.+     ..+.+||+.+..-..  .+.+..      ..+..+...+++.+++.|+.++    
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~--~~~~~~------~~v~~~~~s~~~~~l~s~~~dg----  356 (408)
T 4a11_B          294 GLKFTVSCGCSSEFVFVPYG-----STIAVYTVYSGEQIT--MLKGHY------KTVDCCVFQSNFQELYSGSRDC----  356 (408)
T ss_dssp             CCCCEECCSSSSCEEEEEET-----TEEEEEETTTCCEEE--EECCCS------SCEEEEEEETTTTEEEEEETTS----
T ss_pred             cceeEEecCCCceEEEEecC-----CEEEEEECcCCccee--eeccCC------CeEEEEEEcCCCCEEEEECCCC----
Confidence              111111123334444322     368899987765332  222111      1223334445556777787665    


Q ss_pred             eEEEEECCCC
Q 012184          286 EVFVMRLKPR  295 (469)
Q Consensus       286 ~~~~~d~~~~  295 (469)
                      .+.+||+.+.
T Consensus       357 ~i~iw~~~~~  366 (408)
T 4a11_B          357 NILAWVPSLY  366 (408)
T ss_dssp             CEEEEEECC-
T ss_pred             eEEEEeCCCC
Confidence            3777777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.21  E-value=0.74  Score=42.85  Aligned_cols=196  Identities=13%  Similarity=0.088  Sum_probs=89.5

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECC-CCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~-t~~W~~   93 (469)
                      .+++||+.++++..+.....              ......+.+..- +..||+.+. .     ...+..||+. ++....
T Consensus        64 ~v~~~~~~~g~~~~~~~~~~--------------~~~~p~~~a~spdg~~l~~~~~-~-----~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           64 GIAAWQIDGQTAHKLNTVVA--------------PGTPPAYVAVDEARQLVYSANY-H-----KGTAEVMKIAADGALTL  123 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEE--------------ESCCCSEEEEETTTTEEEEEET-T-----TTEEEEEEECTTSCEEE
T ss_pred             eEEEEEecCCcEEEeeeeec--------------CCCCCEEEEECCCCCEEEEEeC-C-----CCEEEEEEeCCCCCeee
Confidence            68889988888777665321              111112222222 445666542 1     1237777774 444443


Q ss_pred             ee---cCCCCCCCCc---ceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC-CCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184           94 ME---TSGKVPVARG---GHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHA  164 (469)
Q Consensus        94 ~~---~~g~~p~~r~---~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~  164 (469)
                      +.   ..+..|..|.   ....+.+  ++++|+.+..      .+.+++|++. ++....+... ..+....-..++...
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~sp  196 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSP  196 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECT
T ss_pred             cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECC
Confidence            32   2222232221   1122333  4566665432      3468899987 5655543321 111111111233333


Q ss_pred             Cc-EEEEEecCCCCcccCcEEEEECC--CCceEeeeecCCCCCC----CcceEEEEE-CC-EEEEEecCCCCCCcceEEE
Q 012184          165 NR-YLIVFGGCSHSIFFNDLHVLDLQ--TNEWSQPEIKGDLVTG----RAGHAGITI-DE-NWYIVGGGDNNNGCQETIV  235 (469)
Q Consensus       165 ~~-~l~v~GG~~~~~~~~~i~~~d~~--~~~W~~~~~~~~~p~~----r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~  235 (469)
                      ++ ++|+.+..+     +.+.+|++.  +..+..+......+..    .....++.. ++ .||+.+..     .+.+.+
T Consensus       197 dg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----~~~v~v  266 (347)
T 3hfq_A          197 DGQYAFLAGELS-----SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----YNTLAV  266 (347)
T ss_dssp             TSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----TTEEEE
T ss_pred             CCCEEEEEeCCC-----CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----CCEEEE
Confidence            44 577765432     345556554  5666544322222221    112223322 34 46666542     246778


Q ss_pred             EECC-CCcEEEecc
Q 012184          236 LNMT-KLAWSILTS  248 (469)
Q Consensus       236 ~d~~-~~~W~~~~~  248 (469)
                      ||+. ...+..+..
T Consensus       267 ~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          267 FAVTADGHLTLIQQ  280 (347)
T ss_dssp             EEECGGGCEEEEEE
T ss_pred             EEECCCCcEEEeEE
Confidence            8875 334555443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.19  E-value=0.85  Score=42.87  Aligned_cols=137  Identities=13%  Similarity=0.042  Sum_probs=70.0

Q ss_pred             cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE--cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184          131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  208 (469)
Q Consensus       131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  208 (469)
                      .+.++|+.+.+....-. +. ..+  -.++...  .++.+++.|+.+     ..+.++|+.+.+....- . . .. ..-
T Consensus       177 ~v~lwd~~~~~~~~~~~-~h-~~~--v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~~~~-~-~-h~-~~v  243 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFH-GH-GAD--VLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCVQAF-E-T-HE-SDV  243 (354)
T ss_dssp             EEEEEETTTCCEEEEEE-CC-SSC--EEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEEEEE-C-C-CS-SCE
T ss_pred             cEEEEeCCCCeEEEEEc-CC-CCC--eEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe-c-C-CC-CCe
Confidence            48889998876543221 11 111  1111111  134577777765     35889999887654321 0 1 11 111


Q ss_pred             eEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceE
Q 012184          209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEV  287 (469)
Q Consensus       209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~  287 (469)
                      .+++.. ++.+++.|+.++     .+.+||+.+..-..+-.  ...    .......+...+++.+++.|+.++    .+
T Consensus       244 ~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~--~~~----~~~~~~~~~~s~~g~~l~~g~~d~----~i  308 (354)
T 2pbi_B          244 NSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYS--KES----IIFGASSVDFSLSGRLLFAGYNDY----TI  308 (354)
T ss_dssp             EEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC--CTT----CCSCEEEEEECTTSSEEEEEETTS----CE
T ss_pred             EEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEc--CCC----cccceeEEEEeCCCCEEEEEECCC----cE
Confidence            122222 456777777532     47788887764322211  110    112233444455567777777654    48


Q ss_pred             EEEECCCC
Q 012184          288 FVMRLKPR  295 (469)
Q Consensus       288 ~~~d~~~~  295 (469)
                      .+||+.+.
T Consensus       309 ~vwd~~~~  316 (354)
T 2pbi_B          309 NVWDVLKG  316 (354)
T ss_dssp             EEEETTTC
T ss_pred             EEEECCCC
Confidence            88887554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.16  E-value=0.71  Score=43.60  Aligned_cols=201  Identities=12%  Similarity=0.027  Sum_probs=97.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .++.+|+.++.-..+....                .......+..- +..|++... .      ..++.+|+.++.-..+
T Consensus        61 ~l~~~d~~~g~~~~lt~~~----------------~~~~~~~~~spdg~~l~~~~~-~------~~l~~~d~~~g~~~~~  117 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGR----------------GDNTFGGFLSPDDDALFYVKD-G------RNLMRVDLATLEENVV  117 (388)
T ss_dssp             EEEEEETTTCEEEECCCSS----------------CBCSSSCEECTTSSEEEEEET-T------TEEEEEETTTCCEEEE
T ss_pred             eEEEEeCCCCceEEeeeCC----------------CCCccceEEcCCCCEEEEEeC-C------CeEEEEECCCCcceee
Confidence            5888888888776665432                11111112222 444554432 1      3599999999886666


Q ss_pred             ecCCCCCCCCcceEEEEE--CCEEEE-Ee--ccCC-------------CCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           95 ETSGKVPVARGGHSVTLV--GSRLII-FG--GEDR-------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~--~~~lyi-~G--G~~~-------------~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      .   ..|...........  ++.+++ +-  +...             .......++++|+.++.-..+....    ...
T Consensus       118 ~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~  190 (388)
T 3pe7_A          118 Y---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN----QWL  190 (388)
T ss_dssp             E---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES----SCE
T ss_pred             e---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC----ccc
Confidence            5   23333222222222  233322 11  0000             0112367999999998766664211    111


Q ss_pred             CceEEEEc-CcEEEEEecCCC-CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceE
Q 012184          157 DHSAALHA-NRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQET  233 (469)
Q Consensus       157 ~~~~~~~~-~~~l~v~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~  233 (469)
                       .....-. ++..++|..... ......++.+|+.+.....+..   ..........+.. +++.+++...........+
T Consensus       191 -~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (388)
T 3pe7_A          191 -GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI  266 (388)
T ss_dssp             -EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred             -cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence             2223333 444444443322 1224689999998776665531   1111111112222 4443333222222112359


Q ss_pred             EEEECCCCcEEEeccCC
Q 012184          234 IVLNMTKLAWSILTSVK  250 (469)
Q Consensus       234 ~~~d~~~~~W~~~~~~~  250 (469)
                      +++|+.+..-..+...+
T Consensus       267 ~~~d~~~g~~~~l~~~~  283 (388)
T 3pe7_A          267 YSADPETLENRQLTSMP  283 (388)
T ss_dssp             EEECTTTCCEEEEEEEC
T ss_pred             EEEecCCCceEEEEcCC
Confidence            99999988876665443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.14  E-value=0.85  Score=42.36  Aligned_cols=235  Identities=12%  Similarity=0.005  Sum_probs=121.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCC--eEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETN--LCG   92 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~   92 (469)
                      .+.++|+.+++........               . ....+.+++. ++.||+....      ...+.+||+...  .-.
T Consensus        70 ~i~~~d~~~g~~~~~~~~~---------------~-~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~  127 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKN---------------L-FYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLL  127 (329)
T ss_dssp             CEEEECTTTCCEEEEECTT---------------T-CSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSE
T ss_pred             cEEEEECCCCeEEeccCCC---------------c-cCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEE
Confidence            5888888877754322211               1 1122333333 5678887542      234899998655  222


Q ss_pred             EeecCC---CCCCCCcce-EEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCC----CCCCC-CceEE
Q 012184           93 VMETSG---KVPVARGGH-SVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP----PAPRY-DHSAA  161 (469)
Q Consensus        93 ~~~~~g---~~p~~r~~~-~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~----p~~r~-~~~~~  161 (469)
                      .+...+   ..+...... .++.-  ++.||+..++.     .+.|.+||+....-..+...+..    +.... -+.++
T Consensus       128 ~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia  202 (329)
T 3fvz_A          128 ILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLA  202 (329)
T ss_dssp             EESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred             EecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence            332211   101111122 33333  46899987532     34589999665444444322221    11111 23444


Q ss_pred             EEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCC--CCCcceEEEEEC
Q 012184          162 LHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN--NNGCQETIVLNM  238 (469)
Q Consensus       162 ~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~d~~~~d~  238 (469)
                      +..+ +.||+....+     +.|.+||+.+++....-.  .........+++...+.+|+..|...  ......+.++|+
T Consensus       203 ~d~~~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~--~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~  275 (329)
T 3fvz_A          203 LVPHLDQLCVADREN-----GRIQCFKTDTKEFVREIK--HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF  275 (329)
T ss_dssp             EETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEC--CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEET
T ss_pred             EECCCCEEEEEECCC-----CEEEEEECCCCcEEEEEe--ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEc
Confidence            4444 7899876432     569999998776654321  11122222344444567777776422  222346889998


Q ss_pred             CCCcEEEecc-CCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          239 TKLAWSILTS-VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       239 ~~~~W~~~~~-~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      .+......-. ...      .......+.+++++.|||....++    .+++|+++.
T Consensus       276 ~~g~~~~~~~~~~~------~~~~p~~ia~~~dG~lyvad~~~~----~I~~~~~~~  322 (329)
T 3fvz_A          276 SSGEIIDVFKPVRK------HFDMPHDIVASEDGTVYIGDAHTN----TVWKFTLTE  322 (329)
T ss_dssp             TTCCEEEEECCSSS------CCSSEEEEEECTTSEEEEEESSSC----CEEEEEEEE
T ss_pred             CCCeEEEEEcCCCC------ccCCeeEEEECCCCCEEEEECCCC----EEEEEeCCc
Confidence            8776554311 111      111223445566678998875443    588887743

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.12  E-value=1.1  Score=43.54  Aligned_cols=186  Identities=12%  Similarity=0.061  Sum_probs=95.6

Q ss_pred             EECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           60 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        60 ~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ..++.+++.|+.++      .+..||+.+..-...-   ....... .+++.. ++..++.|+.+.      .+.+||+.
T Consensus       277 ~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~~v-~~~~~~~~~~~l~sg~~dg------~i~vwd~~  340 (464)
T 3v7d_B          277 SGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTDRI-YSTIYDHERKRCISASMDT------TIRIWDLE  340 (464)
T ss_dssp             EEETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSCE-EEEEEETTTTEEEEEETTS------CEEEEETT
T ss_pred             cCCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCCCE-EEEEEcCCCCEEEEEeCCC------cEEEEECC
Confidence            33455666666432      2899999887654332   1111111 222222 445666666442      48999998


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  218 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  218 (469)
                      +.+-...- .+    ....-..+.+.++ .++.|+.+     ..+.+||+.+..-....   . ........+...++.+
T Consensus       341 ~~~~~~~~-~~----h~~~v~~~~~~~~-~l~s~s~d-----g~v~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          341 NGELMYTL-QG----HTALVGLLRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSY---H-HTNLSAITTFYVSDNI  405 (464)
T ss_dssp             TTEEEEEE-CC----CSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEE---E-CTTCCCEEEEEECSSE
T ss_pred             CCcEEEEE-eC----CCCcEEEEEEcCC-EEEEEeCC-----CcEEEEECCCCceeeee---c-CCCCccEEEEEeCCCE
Confidence            87643322 11    1122233444444 66666654     35889998876532211   1 1112222334446677


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      ++.|+ +     ..+.+||+.+..-........       ...+..+..+ +..+++.++.++  ..-++++|.
T Consensus       406 l~~~~-d-----g~i~iwd~~~g~~~~~~~~~~-------~~~v~~v~~~-~~~l~~~~~~~g--~~~i~~ldf  463 (464)
T 3v7d_B          406 LVSGS-E-----NQFNIYNLRSGKLVHANILKD-------ADQIWSVNFK-GKTLVAAVEKDG--QSFLEILDF  463 (464)
T ss_dssp             EEEEE-T-----TEEEEEETTTCCEEESCTTTT-------CSEEEEEEEE-TTEEEEEEEETT--EEEEEEEEC
T ss_pred             EEEec-C-----CeEEEEECCCCcEEehhhccC-------CCcEEEEEec-CCEEEEEEEeCC--eEEEEEeec
Confidence            77766 2     368899998876543211111       1222333333 567777776555  234556654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.11  E-value=0.038  Score=52.48  Aligned_cols=196  Identities=11%  Similarity=0.035  Sum_probs=90.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+..||+.++.|..+..   +........++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus        22 ~g~~l~~~~~d~------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTATN------QVELYEQDGNGWKHART---FSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSSS------CBCEEEEETTEEEECCC---BCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC----
T ss_pred             CCCEEEEecCCC------EEEEEEccCCceEEEEE---EecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCC
Confidence            556666766432      27778888888877652   2222222333333  35666676644      2488889887


Q ss_pred             Ce-EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCCCCCCcceEEEEE-CC
Q 012184          140 MT-WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE  216 (469)
Q Consensus       140 ~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~  216 (469)
                      .. |........  ....-.++....++.+++.|+.+     ..+.+||+.+.. |..+..... +....-.+++.. ++
T Consensus        87 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~  158 (377)
T 3dwl_C           87 DGTWKQTLVLLR--LNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNN  158 (377)
T ss_dssp             --CCCCEEECCC--CSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTS
T ss_pred             CCceeeeeEecc--cCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCC
Confidence            76 433322111  11111222222355566777654     357788887664 433321111 111122233333 45


Q ss_pred             EEEEEecCCCCCCcceEEEEECCCCcEE----------------EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184          217 NWYIVGGGDNNNGCQETIVLNMTKLAWS----------------ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  280 (469)
Q Consensus       217 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~----------------~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~  280 (469)
                      .+++.|+.+     ..+.+||+......                .+..+       .....+..+...+++.+++.|+.+
T Consensus       159 ~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          159 VLLAAGCAD-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             SEEEEEESS-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTTSSCEEEEETT
T ss_pred             CEEEEEeCC-----CEEEEEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCCCCEEEEEeCC
Confidence            677777754     24677777533211                11111       011223444455556677777765


Q ss_pred             CCCCceEEEEECCCCC
Q 012184          281 GKYNNEVFVMRLKPRD  296 (469)
Q Consensus       281 ~~~~~~~~~~d~~~~~  296 (469)
                      +    .+.+||+.+..
T Consensus       227 ~----~i~iwd~~~~~  238 (377)
T 3dwl_C          227 S----SVTIAYPSAPE  238 (377)
T ss_dssp             T----EEC-CEECSTT
T ss_pred             C----cEEEEECCCCC
Confidence            4    46777776554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.11  E-value=0.63  Score=43.99  Aligned_cols=188  Identities=8%  Similarity=0.008  Sum_probs=99.8

Q ss_pred             EEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcce-EEEEEC--CEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           64 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVG--SRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        64 ~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~--~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      .+++.|+.++      .+.+||+.+........   ........ +++...  +.+++.|+.+      ..+.++|+.+.
T Consensus        87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG------DIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS------CEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSC
T ss_pred             CEEEEEcCCC------eEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCC
Confidence            5777776532      28899999887665542   11122222 233333  3566666543      34889999987


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE-E
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN-W  218 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-l  218 (469)
                      ....+....  .....-.++....++.+++.|+.+     ..+.+||+....-..+.   .  ....-.+++.. ++. +
T Consensus       152 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~--h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          152 VIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEK---L--HKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEE---C--SSSCEEEEEECSSCTTE
T ss_pred             ceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEec---c--CCCcEEEEEECCCCCCE
Confidence            766654211  111122233334455577777654     46889998544333332   1  11112223332 233 7


Q ss_pred             EEEecCCCCCCcceEEEEECCC----CcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTK----LAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~----~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      ++.|+.+     ..+.+||+.+    ........  .       ...+..+...+ ++.+++.|+.++    .+.+||+.
T Consensus       220 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~--~-------~~~v~~~~~s~~~~~~l~~~~~d~----~i~iwd~~  281 (383)
T 3ei3_B          220 MATSSVD-----ATVKLWDLRNIKDKNSYIAEMP--H-------EKPVNAAYFNPTDSTKLLTTDQRN----EIRVYSSY  281 (383)
T ss_dssp             EEEEETT-----SEEEEEEGGGCCSTTCEEEEEE--C-------SSCEEEEEECTTTSCEEEEEESSS----EEEEEETT
T ss_pred             EEEEeCC-----CEEEEEeCCCCCcccceEEEec--C-------CCceEEEEEcCCCCCEEEEEcCCC----cEEEEECC
Confidence            7777643     3578888876    33222111  0       12233444555 566777777654    58888886


Q ss_pred             CCC
Q 012184          294 PRD  296 (469)
Q Consensus       294 ~~~  296 (469)
                      +..
T Consensus       282 ~~~  284 (383)
T 3ei3_B          282 DWS  284 (383)
T ss_dssp             BTT
T ss_pred             CCc
Confidence            543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.10  E-value=0.77  Score=41.84  Aligned_cols=63  Identities=10%  Similarity=0.084  Sum_probs=33.6

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEECC
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      +.+++.|+.+.      .+..+|+.++.|..+...   ........++.+.    +.+++.|+.+      ..+.+||+.
T Consensus        67 g~~l~s~s~D~------~v~iWd~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~  131 (297)
T 2pm7_B           67 GTILASCSYDG------KVMIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFK  131 (297)
T ss_dssp             CSEEEEEETTT------EEEEEEBSSSCBCCCEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBC
T ss_pred             CCEEEEEcCCC------EEEEEEcCCCceEEEEEe---ecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEec
Confidence            56777776542      388888888776554321   1111122233332    4466666543      236777776


Q ss_pred             CC
Q 012184          139 TM  140 (469)
Q Consensus       139 t~  140 (469)
                      +.
T Consensus       132 ~~  133 (297)
T 2pm7_B          132 EN  133 (297)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.10  E-value=0.76  Score=41.41  Aligned_cols=191  Identities=8%  Similarity=-0.078  Sum_probs=98.4

Q ss_pred             eeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEE
Q 012184           56 HCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVH  133 (469)
Q Consensus        56 ~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~  133 (469)
                      ++++.. ++.||+....      ...+++||+ ++....+....   ....-..++.- ++.+|+...      ..+.++
T Consensus       102 ~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~------~~~~i~  165 (299)
T 2z2n_A          102 YGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTEN------QNNAIG  165 (299)
T ss_dssp             EEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEET------TTTEEE
T ss_pred             eeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeC------CCCEEE
Confidence            344443 5778876432      234899998 77766654211   11122333333 457887542      134699


Q ss_pred             EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCC-CcceEEE
Q 012184          134 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG-RAGHAGI  212 (469)
Q Consensus       134 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~  212 (469)
                      +||+ +++.........   ...-..++...++.+|+....     .+.+++||+ ++.+..+..    +.. ...++++
T Consensus       166 ~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~  231 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKI----PTPNARPHAIT  231 (299)
T ss_dssp             EECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEE
T ss_pred             EEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEEC----CCCCCCceeEE
Confidence            9999 777766532111   111223444445668876432     256899999 777665421    111 1222333


Q ss_pred             EE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          213 TI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       213 ~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      .. ++.+|+....     .+.+.+||+ +.....+.. +..      ......+.. .++.|++...     .+.+.+|+
T Consensus       232 ~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~-~~~------~~~~~~i~~-~~g~l~v~~~-----~~~l~~~~  292 (299)
T 2z2n_A          232 AGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPI-QIK------SAEPHGICF-DGETIWFAME-----CDKIGKLT  292 (299)
T ss_dssp             ECSTTCEEEEETT-----TTEEEEEET-TTEEEEEEC-SSS------SCCEEEEEE-CSSCEEEEET-----TTEEEEEE
T ss_pred             ECCCCCEEEeccC-----CceEEEECC-CCceEEEeC-CCC------CCccceEEe-cCCCEEEEec-----CCcEEEEE
Confidence            33 4577776421     246889998 444444321 111      111222223 4567777653     23588888


Q ss_pred             CCCC
Q 012184          292 LKPR  295 (469)
Q Consensus       292 ~~~~  295 (469)
                      +.+.
T Consensus       293 ~~~~  296 (299)
T 2z2n_A          293 LIKD  296 (299)
T ss_dssp             EC--
T ss_pred             cCcc
Confidence            7654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.09  E-value=0.54  Score=45.37  Aligned_cols=92  Identities=10%  Similarity=0.045  Sum_probs=47.8

Q ss_pred             CcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCC
Q 012184          181 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE  258 (469)
Q Consensus       181 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~  258 (469)
                      ..|.++|+.+..-......   ..  ...+++..  ++.+++.+|...    +.+.+||+.+..  .+..+.+..     
T Consensus       301 ~~I~iwd~~t~~~~~~~~~---~~--~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~--~v~~l~gH~-----  364 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDA---HS--QVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMA--KVAELKGHT-----  364 (420)
T ss_dssp             CEEEEEETTTTEEEEEEEC---SS--CEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCC--EEEEECCCS-----
T ss_pred             CEEEEEeCCccccceeecc---cc--ceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCc--EEEEEcCCC-----
Confidence            3588999888765442211   11  11222222  344555545322    358889987654  333333221     


Q ss_pred             CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          259 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       259 ~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                       ..+..+...+++.+++.||.++    .+.++|+.
T Consensus       365 -~~V~~l~~spdg~~l~S~s~D~----tvriWdv~  394 (420)
T 4gga_A          365 -SRVLSLTMSPDGATVASAAADE----TLRLWRCF  394 (420)
T ss_dssp             -SCEEEEEECTTSSCEEEEETTT----EEEEECCS
T ss_pred             -CCEEEEEEcCCCCEEEEEecCC----eEEEEECC
Confidence             1233444555667777888765    36666664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.07  E-value=0.86  Score=47.95  Aligned_cols=223  Identities=5%  Similarity=-0.002  Sum_probs=110.6

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCC------
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLET------   88 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t------   88 (469)
                      .+.+||+.++++.........           .......-+++... ++.|++. ... .+     +++||+.+      
T Consensus       393 GL~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~i~~d~~g~lWig-T~~-~G-----l~~~~~~~~~~~~~  454 (758)
T 3ott_A          393 SINRYDYATRQFIHYNIVDNT-----------GTYNTNWTYYIFEDTAGQLWIS-TCL-GG-----IFVVDKHKLMQSTS  454 (758)
T ss_dssp             EEEEEETTTTEEEEEEEECCC-------------CBSSSEEEEEECTTSEEEEE-ESS-SC-----EEEEEHHHHHHCCS
T ss_pred             cHhhcCcCCCcEEEeecCCCc-----------CCCCCceEEEEEEcCCCCEEEE-ECC-Cc-----eEEEccccccccCC
Confidence            578899999988877643210           00011122333333 4667763 221 12     78888653      


Q ss_pred             CeEE---EeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184           89 NLCG---VMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA  164 (469)
Q Consensus        89 ~~W~---~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~  164 (469)
                      ..+.   .......++.... +++.. -++.|+++||..      +-+++||+.+.++...... ..+......+++...
T Consensus       455 ~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~  526 (758)
T 3ott_A          455 GQYIAEQNYSVHNGLSGMFI-NQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDE  526 (758)
T ss_dssp             SEEECSEEECGGGTCSCSCE-EEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECT
T ss_pred             cceeccccccccccccccee-eeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEecCC-CcCCCcccceEEECC
Confidence            2232   1111111222111 12222 246788876643      2399999999999877421 111111222333334


Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      ++.|++- ..      +-+.+||+.+..+.... ...+|. ....+++.-++.|++...       +-+.+||+.+....
T Consensus       527 ~g~lWig-t~------~Gl~~~~~~~~~~~~~~-~~gl~~-~~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~  590 (758)
T 3ott_A          527 DGLLWVG-FH------GGVMRINPKDESQQSIS-FGSFSN-NEILSMTCVKNSIWVSTT-------NGLWIIDRKTMDAR  590 (758)
T ss_dssp             TSCEEEE-ET------TEEEEECC--CCCCBCC-CCC----CCEEEEEEETTEEEEEES-------SCEEEEETTTCCEE
T ss_pred             CCCEEEE-ec------CceEEEecCCCceEEec-ccCCCc-cceEEEEECCCCEEEECC-------CCeEEEcCCCceeE
Confidence            5778763 21      24899999988876653 122332 223344444677777642       35889999988776


Q ss_pred             EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          245 ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       245 ~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      ... ++..    .  +.. ++....++.|+ |||.+|     +..|+|+.
T Consensus       591 ~~~-~~~~----~--~~~-~~~~~~~G~l~-fG~~~G-----l~~f~p~~  626 (758)
T 3ott_A          591 QQN-MTNK----R--FTS-LLFDPKEDCVY-LGGADG-----FGISHSNL  626 (758)
T ss_dssp             EC---CCC----C--CSE-EEEETTTTEEE-EECBSE-----EEEEEC--
T ss_pred             Eec-CCCC----c--eee-eEEECCCCcEE-EecCCc-----eEEEChhh
Confidence            542 2211    1  121 22222245555 677544     66777753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.07  E-value=0.71  Score=47.98  Aligned_cols=115  Identities=16%  Similarity=0.124  Sum_probs=62.6

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.+|..+++  |+.-......       .. +.........+.++.++.||+...       ...++.+|..|++  |
T Consensus        88 ~v~AlD~~tG~~~W~~~~~~~~~-------~~-~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           88 VVHAIDTRTGNRIWTYDPQIDRS-------TG-FKGCCDVVNRGVALWKGKVYVGAW-------DGRLIALDAATGKEVW  152 (677)
T ss_dssp             CEEEEETTTTEEEEEECCCCCGG-------GG-GGSSSCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEEEEcCCCCcc-------cc-ccccccCCCCCceEECCEEEEEcC-------CCEEEEEECCCCCEEe
Confidence            78999998865  8765543210       00 000001122345667888888642       1349999998886  8


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  146 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~  146 (469)
                      +.-.............+.++.++.+|+-.+.. .......++.||..|++  |+.-.
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~-~~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA-EYGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEES
T ss_pred             eecCCcCcCcCcccccCcEEECCEEEEEeccc-ccCCCCEEEEEECCCCcEEEEecc
Confidence            76532011111112223345677777643322 11134679999998875  77643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.01  E-value=1  Score=42.12  Aligned_cols=171  Identities=9%  Similarity=0.079  Sum_probs=84.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..||..++.|........               .......++.+  ++..++.|+.+..      +..+|..+..+..
T Consensus        39 ~i~iw~~~~~~~~~~~~~~~---------------~h~~~v~~~~~sp~g~~l~s~s~D~~------v~iw~~~~~~~~~   97 (345)
T 3fm0_A           39 RIRIWGTEGDSWICKSVLSE---------------GHQRTVRKVAWSPCGNYLASASFDAT------TCIWKKNQDDFEC   97 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECS---------------SCSSCEEEEEECTTSSEEEEEETTSC------EEEEEECCC-EEE
T ss_pred             eEEEEEcCCCcceeeeeecc---------------ccCCcEEEEEECCCCCEEEEEECCCc------EEEEEccCCCeEE
Confidence            67788888888765443211               01112222333  5667777765432      6777777776655


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC-eEEEeeeCCCCCCCCCCceEEEEcCcEEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPRYDHSAALHANRYLIV  170 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v  170 (469)
                      +...   ........++.+  ++.+++.|+.+.      .+.++|+.+. .+..+.......  ..-.+++...++.+++
T Consensus        98 ~~~~---~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~  166 (345)
T 3fm0_A           98 VTTL---EGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHT--QDVKHVVWHPSQELLA  166 (345)
T ss_dssp             EEEE---CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCC--SCEEEEEECSSSSCEE
T ss_pred             EEEc---cCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcC--CCeEEEEECCCCCEEE
Confidence            4421   111112223333  456777776543      3788887664 233332211111  1111222233555777


Q ss_pred             EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCC
Q 012184          171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGD  225 (469)
Q Consensus       171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~  225 (469)
                      .|+.+     ..+.+||..+..|..+.......  ..-.+++.. ++..++.|+.+
T Consensus       167 s~s~d-----~~i~~w~~~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          167 SASYD-----DTVKLYREEEDDWVCCATLEGHE--STVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             EEETT-----SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred             EEeCC-----CcEEEEEecCCCEEEEEEecCCC--CceEEEEECCCCCEEEEEeCC
Confidence            77655     35788888888876543221111  111122222 45677777654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.01  E-value=0.5  Score=43.64  Aligned_cols=203  Identities=11%  Similarity=0.087  Sum_probs=92.4

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCccCcEEEEECC
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      +.+++.|+.+.      .+..+|+.++.|..+...   ........++.+  +  +.+++.|+.+.      .+.++|+.
T Consensus        71 ~~~l~s~s~D~------~v~iWd~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYDR------KVIIWREENGTWEKSHEH---AGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYT  135 (316)
T ss_dssp             SSCEEEEETTS------CEEEECCSSSCCCEEEEE---CCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEEC
T ss_pred             CCEEEEEECCC------EEEEEECCCCcceEEEEc---cCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecC
Confidence            56777776543      288889888777554321   111111222233  2  45666666543      37777776


Q ss_pred             CC-eEEEeeeCCCCCCCCCCceEEEEc------------------CcEEEEEecCCCCcccCcEEEEECCC-CceEeeee
Q 012184          139 TM-TWDAVEVTQTPPAPRYDHSAALHA------------------NRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEI  198 (469)
Q Consensus       139 t~-~W~~~~~~g~~p~~r~~~~~~~~~------------------~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~  198 (469)
                      +. .|...........+.   ..+.+.                  ++.+++.|+.+     +.+.++|+.+ ..|..+..
T Consensus       136 ~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~~~~~~~~  207 (316)
T 3bg1_A          136 GEGQWEVKKINNAHTIGC---NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD-----NLIKLWKEEEDGQWKEEQK  207 (316)
T ss_dssp             SSSCEEECCBTTSSSSCB---CCCEECCCCCC------CCSCCCCCCCBEECCBTT-----SBCCEEEECTTSCEEEEEC
T ss_pred             CCCCcceeeeeccccCCc---ceEEEccccCCccccccccccCccccceEEEecCC-----CeEEEEEeCCCCccceeee
Confidence            65 464432211100000   001110                  12355666544     3456677653 34655431


Q ss_pred             cCCCCCCCcceEEEEEC------CEEEEEecCCCCCCcceEEEEECCC---CcEEEeccCCCCCCCCCCCcceEEEEEcC
Q 012184          199 KGDLVTGRAGHAGITID------ENWYIVGGGDNNNGCQETIVLNMTK---LAWSILTSVKGRNPLASEGLSVCSAIIEG  269 (469)
Q Consensus       199 ~~~~p~~r~~~~~~~~~------~~l~v~GG~~~~~~~~d~~~~d~~~---~~W~~~~~~~~~~p~~r~~~s~~~~~~~~  269 (469)
                         +......-..+.+.      +.+++.|+.++     .+.++|+.+   ..|... .+..      ....+..+...+
T Consensus       208 ---l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~-~~~~------~~~~v~~v~~sp  272 (316)
T 3bg1_A          208 ---LEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-----RVFIWTCDDASSNTWSPK-LLHK------FNDVVWHVSWSI  272 (316)
T ss_dssp             ---CBCCSSCEEEEECCCCSSCSCCEEEEEETTC-----EEEEEECSSTTCCCCBCC-EEEE------CSSCEEEEEECT
T ss_pred             ---cccCCCceEEEEecCCCCCCCceEEEEcCCC-----eEEEEEccCccccchhhh-hhhc------CCCcEEEEEEcC
Confidence               11111111122221      25667766432     466777654   222210 0000      011233344455


Q ss_pred             CcEEEEEeccCCCCCceEEEEECC-CCCCCCccccCCCc
Q 012184          270 EHHLVAFGGYNGKYNNEVFVMRLK-PRDIPRPKIFQSPA  307 (469)
Q Consensus       270 ~~~l~v~GG~~~~~~~~~~~~d~~-~~~w~~~~~~~~~~  307 (469)
                      ++.+++.||.++.    +.+|+.. ...|..+..+....
T Consensus       273 ~g~~las~~~D~~----v~lw~~~~~g~~~~~~~~~~~~  307 (316)
T 3bg1_A          273 TANILAVSGGDNK----VTLWKESVDGQWVCISDVNKGQ  307 (316)
T ss_dssp             TTCCEEEEESSSC----EEEEEECTTSCEEEEEECC---
T ss_pred             CCCEEEEEcCCCe----EEEEEECCCCcEEEeeeccCCC
Confidence            6677788886653    5566654 35676665555443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.01  E-value=1  Score=42.50  Aligned_cols=176  Identities=11%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE---CCEEEEEccccCCCCCcceEEEEECCCCeEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCG   92 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~   92 (469)
                      .+..||+.++.....-...                .......++.+   ++.+++.|+.+      ..+..+|+.+....
T Consensus        97 ~i~iwd~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~  154 (383)
T 3ei3_B           97 DIILWDYDVQNKTSFIQGM----------------GPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQ  154 (383)
T ss_dssp             CEEEEETTSTTCEEEECCC----------------STTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEE
T ss_pred             eEEEEeCCCcccceeeecC----------------CcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceE
Confidence            6788898877765544321                11112222333   34677776543      23888999887776


Q ss_pred             EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE-EE
Q 012184           93 VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LI  169 (469)
Q Consensus        93 ~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~  169 (469)
                      .+...   ........++.+  ++.+++.|+.+      ..+.+||+....-..+..     ....-.++....++. ++
T Consensus       155 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          155 VFAKT---DSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL-----HKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEECC---CCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC-----SSSCEEEEEECSSCTTEE
T ss_pred             EEecc---CCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc-----CCCcEEEEEECCCCCCEE
Confidence            66521   111111222222  45566666643      358899986554444331     111112233333444 67


Q ss_pred             EEecCCCCcccCcEEEEECCC----CceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          170 VFGGCSHSIFFNDLHVLDLQT----NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       170 v~GG~~~~~~~~~i~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      +.|+.+     ..+.+||+.+    .......     .....-.+++..  ++.+++.|+.+     ..+.+||+.+..
T Consensus       221 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~~  284 (383)
T 3ei3_B          221 ATSSVD-----ATVKLWDLRNIKDKNSYIAEM-----PHEKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDWS  284 (383)
T ss_dssp             EEEETT-----SEEEEEEGGGCCSTTCEEEEE-----ECSSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBTT
T ss_pred             EEEeCC-----CEEEEEeCCCCCcccceEEEe-----cCCCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCCc
Confidence            777654     3588899876    2222211     111122223322  35667777643     357888886543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.01  E-value=0.11  Score=39.33  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHH
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFE  444 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~  444 (469)
                      ..++.++...+....+++.++..++..++.+...+...+..+.+...++...+    .-|.++.-+.+.++.++
T Consensus        26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444444444444444444555544444444444444444444433333332    23334444444444433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.99  E-value=0.59  Score=43.46  Aligned_cols=106  Identities=17%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      +.+++.|+.++      .+.+||+.++.-...-.     .....-.++.+   ++.+++.|+.+.      .+.+||+.+
T Consensus        85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSRG------IIRIINPITMQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETTC------EEEEECTTTCCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTT
T ss_pred             CCEEEEecCCC------EEEEEEchhceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeec
Confidence            56777777442      38899988776433221     01112222333   456777776533      489999988


Q ss_pred             CeEEEeeeCCCCC-CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          140 MTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       140 ~~W~~~~~~g~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      .+-.....  ... ....-.++....++..++.|+.+     +.+.+||+.+..
T Consensus       148 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  194 (366)
T 3k26_A          148 DTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR  194 (366)
T ss_dssp             TEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred             CeEEEEec--ccccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence            87544321  111 11122223333355566777654     458899987654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.99  E-value=0.17  Score=47.00  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=78.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+|+.++..      ..++++|+.+++.......   +....-+.++.. ++ .+|+.+..      .+.+++||+.+
T Consensus        10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t   74 (349)
T 1jmx_B           10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT   74 (349)
T ss_dssp             TCEEEEEEETT------TEEEEEETTTTEEEEEEEC---SSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred             CCEEEEEeCCC------CeEEEEECCCCcEEEEEec---CCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence            67788877642      3499999999876544321   210012233332 33 57776532      34699999998


Q ss_pred             CeEEEeeeCCCCCC--CCCCceEEEEcCc-EEEEEecC---CCC---cccCcEEEEECCCCceEeeeecCCCCCCCcceE
Q 012184          140 MTWDAVEVTQTPPA--PRYDHSAALHANR-YLIVFGGC---SHS---IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  210 (469)
Q Consensus       140 ~~W~~~~~~g~~p~--~r~~~~~~~~~~~-~l~v~GG~---~~~---~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  210 (469)
                      ++.......+..+.  ...-+.++...++ ++|+.+..   ...   ...+.+++||+.++.-........  .++..++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~  152 (349)
T 1jmx_B           75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYL  152 (349)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCC
T ss_pred             CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccc
Confidence            87654332211110  1112333333344 55554421   000   012579999988744222110111  1222233


Q ss_pred             EEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          211 GITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       211 ~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      ++.. ++++|+.++        +++++|+.+..-.
T Consensus       153 ~~~s~dg~l~~~~~--------~i~~~d~~~~~~~  179 (349)
T 1jmx_B          153 MRAADDGSLYVAGP--------DIYKMDVKTGKYT  179 (349)
T ss_dssp             EEECTTSCEEEESS--------SEEEECTTTCCEE
T ss_pred             eeECCCCcEEEccC--------cEEEEeCCCCcee
Confidence            3332 456666422        4889998776644

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.96  E-value=0.88  Score=40.98  Aligned_cols=212  Identities=9%  Similarity=-0.031  Sum_probs=107.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+..||+. +++..+....                .....++++.. ++.||+....      ...++.||+. +....+
T Consensus        84 ~v~~~d~~-g~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~  139 (300)
T 2qc5_A           84 KIGKLSKK-GGFTEYPLPQ----------------PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEY  139 (300)
T ss_dssp             EEEEECTT-SCEEEEECSS----------------TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEE
T ss_pred             eEEEECCC-CCeEEecCCC----------------CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEc
Confidence            57778877 6665443321                11223344443 5778876432      2348999988 766655


Q ss_pred             ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184           95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  173 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG  173 (469)
                      ....   ....-+.++.- +++||+...      ..+.+++||+ +++.......+..   ..-..++...++.+|+...
T Consensus       140 ~~~~---~~~~~~~i~~d~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          140 DLPN---KGSYPAFITLGSDNALWFTEN------QNNSIGRITN-TGKLEEYPLPTNA---AAPVGITSGNDGALWFVEI  206 (300)
T ss_dssp             ECSS---TTCCEEEEEECTTSSEEEEET------TTTEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEET
T ss_pred             cCCC---CCCCceeEEECCCCCEEEEec------CCCeEEEECC-CCcEEEeeCCCCC---CCcceEEECCCCCEEEEcc
Confidence            4211   11112233322 456777542      1345899998 6776665321111   1122333333566887543


Q ss_pred             CCCCcccCcEEEEECCCCceEeeeecCCCCCCCc-ceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184          174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA-GHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  251 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~  251 (469)
                      .     .+.+++||+ +..+.....    +.... ..+++.. ++.+|+....     .+.+.+||+ +........ +.
T Consensus       207 ~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~-~~  269 (300)
T 2qc5_A          207 M-----GNKIGRITT-TGEISEYDI----PTPNARPHAITAGKNSEIWFTEWG-----ANQIGRITN-DNTIQEYQL-QT  269 (300)
T ss_dssp             T-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-TSCEEEEEC-CS
T ss_pred             C-----CCEEEEEcC-CCcEEEEEC----CCCCCCceEEEECCCCCEEEeccC-----CCeEEEECC-CCcEEEEEC-Cc
Confidence            2     246899998 566655431    11112 2233332 4577776521     246889998 455554321 11


Q ss_pred             CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      ..      .....+..++++.|++.+.     . .+++||++
T Consensus       270 ~~------~~~~~i~~~~~g~l~v~~~-----~-~i~~~~p~  299 (300)
T 2qc5_A          270 EN------AEPHGITFGKDGSVWFALK-----C-KIGKLNLN  299 (300)
T ss_dssp             TT------CCCCCEEECTTSCEEEECS-----S-EEEEEEEC
T ss_pred             cC------CccceeEeCCCCCEEEEcc-----C-ceEEeCCC
Confidence            11      0111233444566776543     2 57888764

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=95.95  E-value=0.079  Score=39.67  Aligned_cols=20  Identities=15%  Similarity=0.345  Sum_probs=9.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~  447 (469)
                      ++..|.+++++++..+.+++
T Consensus        87 kl~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           87 KLVEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHH
Confidence            34444444444444444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.95  E-value=0.21  Score=52.23  Aligned_cols=105  Identities=6%  Similarity=-0.079  Sum_probs=50.0

Q ss_pred             cEEEEECCC-CceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCc
Q 012184          182 DLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGL  260 (469)
Q Consensus       182 ~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~  260 (469)
                      .++++|+.+ ..-..+...  .........++.-+++.++++..+......+++++|+.+.....+.......  .....
T Consensus       264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~~~  339 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT--WVPLH  339 (741)
T ss_dssp             EEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS--CCCCC
T ss_pred             EEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC--cCCcC
Confidence            788889887 765544311  0111111122223344444444333334568999999988876653321110  00001


Q ss_pred             ceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          261 SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       261 s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      ....+  .+++.+++.++.++  ...+|.+|...
T Consensus       340 ~~~~~--spdg~~~~~~~~~g--~~~l~~~~~~~  369 (741)
T 2ecf_A          340 NSLRF--LDDGSILWSSERTG--FQHLYRIDSKG  369 (741)
T ss_dssp             SCCEE--CTTSCEEEEECTTS--SCEEEEECSSS
T ss_pred             CceEE--CCCCeEEEEecCCC--ccEEEEEcCCC
Confidence            11122  22334555555443  35677777543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.93  E-value=0.19  Score=47.53  Aligned_cols=148  Identities=9%  Similarity=0.047  Sum_probs=74.2

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE-c-CcEEEEEecCCCCcccCcEEEEECCC
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQT  190 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~  190 (469)
                      ++.+++.|+.+.      .|.+||+.+++....-. +    ....-..+.+ . ++.+++.++.+     ..+.++|+.+
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~-~----h~~~v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~  213 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN-A----HSSEVNCVAACPGKDTIFLSCGED-----GRILLWDTRK  213 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEEEC-C----CSSCEEEEEECTTCSSCEEEEETT-----SCEEECCTTS
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEEc-C----CCCCEEEEEEccCCCceeeeeccC-----CceEEEECCC
Confidence            456666776543      38899999887544321 1    1111122222 2 33466777654     3477888876


Q ss_pred             CceEeeeecCCCCCCCc-ceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEE
Q 012184          191 NEWSQPEIKGDLVTGRA-GHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII  267 (469)
Q Consensus       191 ~~W~~~~~~~~~p~~r~-~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~  267 (469)
                      .+-....   ....... ..+++..  ++.+++.|+.+     ..+.+||+.+..-..  .+...      ...+..+..
T Consensus       214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~~~~--~~~~~------~~~v~~l~~  277 (357)
T 4g56_B          214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPDSAQ--TSAVH------SQNITGLAY  277 (357)
T ss_dssp             SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGGGCE--EECCC------SSCEEEEEE
T ss_pred             Cceeeee---eeccccccccchhhhhcccceEEEeecc-----cceeEEECCCCcEeE--EEecc------ceeEEEEEE
Confidence            6533211   1111111 1223322  35677777643     247888987654211  11111      112233333


Q ss_pred             cC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          268 EG-EHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       268 ~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      .+ +..+++.|+.++    .+.+||+.+..
T Consensus       278 sp~~~~~lasgs~D~----~i~iwd~~~~~  303 (357)
T 4g56_B          278 SYHSSPFLASISEDC----TVAVLDADFSE  303 (357)
T ss_dssp             CSSSSCCEEEEETTS----CEEEECTTSCE
T ss_pred             cCCCCCEEEEEeCCC----EEEEEECCCCc
Confidence            33 346777777665    37788876553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.90  E-value=0.93  Score=40.80  Aligned_cols=196  Identities=8%  Similarity=0.068  Sum_probs=99.1

Q ss_pred             eeeEE--ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcE
Q 012184           56 HCMVK--WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDV  132 (469)
Q Consensus        56 ~~~~~--~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v  132 (469)
                      +.++.  .++.||+.+...     ...+.+||.....-..+..   .... .-+.++.- ++++|+....      .+.+
T Consensus        80 ~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~~---~~~~-~~~~i~~~~~g~l~v~~~~------~~~i  144 (286)
T 1q7f_A           80 NRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFVRKFGA---TILQ-HPRGVTVDNKGRIIVVECK------VMRV  144 (286)
T ss_dssp             EEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEEEEECT---TTCS-CEEEEEECTTSCEEEEETT------TTEE
T ss_pred             eEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEEEEecC---ccCC-CceEEEEeCCCCEEEEECC------CCEE
Confidence            34444  267898886321     1348999955443333331   1111 11233332 4678876432      3469


Q ss_pred             EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE
Q 012184          133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI  212 (469)
Q Consensus       133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~  212 (469)
                      ++||+.......+...+..   ..-..++...++.+|+....     .+.|++||+.......+...+..   .....++
T Consensus       145 ~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~  213 (286)
T 1q7f_A          145 IIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGIT---NYPIGVG  213 (286)
T ss_dssp             EEECTTSCEEEEEECTTTC---SSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTS---CSEEEEE
T ss_pred             EEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCcc---CCCcEEE
Confidence            9999876554444321111   11234444446788886542     25799999866544333211111   1122333


Q ss_pred             EE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          213 TI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       213 ~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      .. ++.+|+....++    ..+.+||.....-..+... ...      .....+.+++++.||+... +    +.+.+|+
T Consensus       214 ~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~-~~~------~~~~~i~~~~~g~l~vs~~-~----~~v~v~~  277 (286)
T 1q7f_A          214 INSNGEILIADNHNN----FNLTIFTQDGQLISALESK-VKH------AQCFDVALMDDGSVVLASK-D----YRLYIYR  277 (286)
T ss_dssp             ECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEES-SCC------SCEEEEEEETTTEEEEEET-T----TEEEEEE
T ss_pred             ECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEccc-CCC------CcceeEEECCCCcEEEECC-C----CeEEEEE
Confidence            32 467888764321    1688999765544433321 111      1122344455668888742 2    4577777


Q ss_pred             CC
Q 012184          292 LK  293 (469)
Q Consensus       292 ~~  293 (469)
                      +.
T Consensus       278 ~~  279 (286)
T 1q7f_A          278 YV  279 (286)
T ss_dssp             CS
T ss_pred             cc
Confidence            64

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.88  E-value=0.95  Score=40.74  Aligned_cols=214  Identities=9%  Similarity=-0.051  Sum_probs=111.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+.+||+. ++...+....                .....++++.. ++.||+....      ...+++||+. +.+..+
T Consensus        42 ~v~~~~~~-~~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~   97 (300)
T 2qc5_A           42 KISSLDQS-GRIKEFEVPT----------------PDAKVMCLIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEY   97 (300)
T ss_dssp             EEEEECTT-SCEEEEECSS----------------TTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEE
T ss_pred             eEEEECCC-CceEEEECCC----------------CCCcceeEEECCCCCEEEEecC------CCeEEEECCC-CCeEEe
Confidence            67778877 6665543321                11122333333 5678876421      2348999988 777666


Q ss_pred             ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184           95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  173 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG  173 (469)
                      ...+   ....-++++.- ++.+|+....      .+.+++||+. ++........   ....-+.++...++.+|+...
T Consensus        98 ~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A           98 PLPQ---PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             ECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEET
T ss_pred             cCCC---CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCceeEEECCCCCEEEEec
Confidence            5211   11222333333 4678876421      3458999987 6665443211   112223444444566887543


Q ss_pred             CCCCcccCcEEEEECCCCceEeeeecCCCCCC-CcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184          174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG-RAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  251 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~  251 (469)
                      .     .+.+++||+ +++...+..    +.. .....++.. ++.+|+....     .+.+++||+ +..+..... +.
T Consensus       165 ~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~-~~  227 (300)
T 2qc5_A          165 Q-----NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDI-PT  227 (300)
T ss_dssp             T-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC-SS
T ss_pred             C-----CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEEC-CC
Confidence            2     246899998 666665431    111 122233332 4678776431     235889998 555554421 11


Q ss_pred             CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      .      ......+..++++.||+....    .+.+.+||++
T Consensus       228 ~------~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~~  259 (300)
T 2qc5_A          228 P------NARPHAITAGKNSEIWFTEWG----ANQIGRITND  259 (300)
T ss_dssp             T------TCCEEEEEECSTTCEEEEETT----TTEEEEECTT
T ss_pred             C------CCCceEEEECCCCCEEEeccC----CCeEEEECCC
Confidence            1      112234455555667776532    2358888873

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.84  E-value=1.1  Score=41.02  Aligned_cols=189  Identities=12%  Similarity=0.062  Sum_probs=91.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.+      ..+.+||+.++.-...-. +    ....-.++.+  ++.+++.|+.+.      .+.++|+.+
T Consensus        66 ~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~-~----h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~  128 (304)
T 2ynn_A           66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFE-A----HPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWEN  128 (304)
T ss_dssp             GGTEEEEEETT------SEEEEEETTTCCEEEEEE-C----CSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGG
T ss_pred             CCCEEEEECCC------CEEEEEECCCCcEEEEEe-C----CCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCC
Confidence            55566666643      238889988876332210 1    1111222223  345666666543      378888876


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE---
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---  214 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---  214 (469)
                      ..-......+.   .. .-..+.+.  ++.+++.|+.+     ..+.++|+.+..-......   ...+....+...   
T Consensus       129 ~~~~~~~~~~h---~~-~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~  196 (304)
T 2ynn_A          129 NWALEQTFEGH---EH-FVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLP  196 (304)
T ss_dssp             TTEEEEEECCC---CS-CEEEEEECTTCTTEEEEEETT-----SEEEEEETTCSSCSEEEEC---CCTTCEEEEEECCST
T ss_pred             Ccchhhhhccc---CC-cEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCccceecc---CCcCcEEEEEEEEcC
Confidence            52111111111   11 11223332  44577777765     3578888765432111100   111111122221   


Q ss_pred             CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      ++.+++.|+.+     ..+.++|+.+..-.  ..+.+..      ..+..+...++..+++.|+.++.    +.+||+.+
T Consensus       197 ~~~~l~s~s~D-----~~i~iWd~~~~~~~--~~~~~h~------~~v~~~~~~p~~~~l~s~s~Dg~----i~iWd~~~  259 (304)
T 2ynn_A          197 DKPYMITASDD-----LTIKIWDYQTKSCV--ATLEGHM------SNVSFAVFHPTLPIIISGSEDGT----LKIWNSST  259 (304)
T ss_dssp             TCCEEEEEETT-----SEEEEEETTTTEEE--EEEECCS------SCEEEEEECSSSSEEEEEETTSC----EEEEETTT
T ss_pred             CCCEEEEEcCC-----CeEEEEeCCCCccc--eeeCCCC------CCEEEEEECCCCCEEEEEcCCCe----EEEEECCC
Confidence            34566666643     35788898776432  2222221      12333445555667788887664    77888765


Q ss_pred             CC
Q 012184          295 RD  296 (469)
Q Consensus       295 ~~  296 (469)
                      ..
T Consensus       260 ~~  261 (304)
T 2ynn_A          260 YK  261 (304)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.84  E-value=0.22  Score=47.38  Aligned_cols=117  Identities=12%  Similarity=-0.034  Sum_probs=55.9

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCC-CCC-CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ-TPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  190 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g-~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~  190 (469)
                      ++ +++.|+.+      ..+.+||+.+......-... ..+ ....-.++....++.+++.|+.+.  ....+.+||+.+
T Consensus       197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~  267 (397)
T 1sq9_A          197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEF  267 (397)
T ss_dssp             TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTT
T ss_pred             Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCC
Confidence            35 66666543      34899999887654332110 000 011122333333555666666431  114689999877


Q ss_pred             CceEeeeecCCCC---------CCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184          191 NEWSQPEIKGDLV---------TGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       191 ~~W~~~~~~~~~p---------~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      .+-...-.....+         ....-.+++.. ++.+++.|+.+     ..+.+||+.+..-
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~  325 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTKER  325 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCce
Confidence            6532211010000         11111222322 45666776642     3688999877653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.79  E-value=0.85  Score=43.07  Aligned_cols=151  Identities=9%  Similarity=-0.021  Sum_probs=75.9

Q ss_pred             cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcE-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCC
Q 012184          129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR  206 (469)
Q Consensus       129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r  206 (469)
                      ...++++|+.++....+...     ........... ++. |++............++++|+.+..+..+..    ..+.
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~  237 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE----HAEG  237 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC----CCTT
T ss_pred             cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec----cCCC
Confidence            45799999999887766521     11112222222 343 4443321111122579999998877766531    1111


Q ss_pred             cce-EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC----
Q 012184          207 AGH-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN----  280 (469)
Q Consensus       207 ~~~-~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~----  280 (469)
                      ... ..+.. +++.+++...........++++|+.+.....+...+        ++. ..+... ++.++++.+..    
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------~~~-~~~s~~-dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--------PCS-HLMSNF-DGSLMVGDGCDAPVD  307 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--------SEE-EEEECS-SSSEEEEEECCC---
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--------CCC-CCccCC-CCceEEEecCCccee
Confidence            111 22222 444444433222222234999999888776664332        122 233330 23355554321    


Q ss_pred             --------CCCCceEEEEECCCCCCC
Q 012184          281 --------GKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       281 --------~~~~~~~~~~d~~~~~w~  298 (469)
                              ......++++|+.+....
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBCC
T ss_pred             eccccccccCCCCcEEEEecccCceE
Confidence                    123467999999876654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.65  Score=43.15  Aligned_cols=196  Identities=8%  Similarity=-0.022  Sum_probs=95.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+.+||+.++.-...-   ..  ......++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus        43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~---~~--h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~  105 (369)
T 3zwl_B           43 EGDLLFSCSKDS------SASVWYSLNGERLGTL---DG--HTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSN  105 (369)
T ss_dssp             TSCEEEEEESSS------CEEEEETTTCCEEEEE---CC--CSSCEEEEEECTTSSEEEEEETT------TEEEEEETTT
T ss_pred             CCCEEEEEeCCC------EEEEEeCCCchhhhhh---hh--cCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCC
Confidence            556666666432      3889998887644332   11  1112222333  35566666543      3589999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc----eEeeeecC----CCCCCCcceEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIKG----DLVTGRAGHAG  211 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~~----~~p~~r~~~~~  211 (469)
                      .+......     .+..-.++....++..++.++.+.......+.+||+.+..    +.......    ...........
T Consensus       106 ~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          106 GQCVATWK-----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             CCEEEEEE-----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             CcEEEEee-----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            87654432     1111223333335556666654422233567888875442    11111000    00001002222


Q ss_pred             EEE--CCEEEEEecCCCCCCcceEEEEECCC-CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEE
Q 012184          212 ITI--DENWYIVGGGDNNNGCQETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVF  288 (469)
Q Consensus       212 ~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~-~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~  288 (469)
                      +.+  ++..+++|+.+     ..+.+||+.+ ..-...  +...      ...+..+...+++.+++.|+.++    .+.
T Consensus       181 ~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~~------~~~v~~~~~~~~~~~l~~~~~d~----~i~  243 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDS--IDLH------EKSISDMQFSPDLTYFITSSRDT----NSF  243 (369)
T ss_dssp             EEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEE--EECC------SSCEEEEEECTTSSEEEEEETTS----EEE
T ss_pred             EEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEE--EecC------CCceeEEEECCCCCEEEEecCCc----eEE
Confidence            222  34566666642     3688999987 332221  1111      11233344445556667776544    578


Q ss_pred             EEECCCCC
Q 012184          289 VMRLKPRD  296 (469)
Q Consensus       289 ~~d~~~~~  296 (469)
                      +||+.+..
T Consensus       244 v~d~~~~~  251 (369)
T 3zwl_B          244 LVDVSTLQ  251 (369)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            88886543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.77  E-value=1.2  Score=40.96  Aligned_cols=224  Identities=9%  Similarity=0.012  Sum_probs=109.5

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeE-EE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLC-GV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W-~~   93 (469)
                      .+..||+.+++....-..+.                .-. ..+..- +..||+.+...      ..++.+|+.++.. ..
T Consensus        21 ~v~~~d~~~~~~~~~~~~~~----------------~~~-~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~   77 (331)
T 3u4y_A           21 RISFFSTDTLEILNQITLGY----------------DFV-DTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVV   77 (331)
T ss_dssp             EEEEEETTTCCEEEEEECCC----------------CEE-EEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEE
T ss_pred             eEEEEeCcccceeeeEEccC----------------Ccc-eEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEE
Confidence            78999999988865544321                111 122222 44577765422      2599999998875 33


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIV  170 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v  170 (469)
                      ....+..|    .++++..  +..|| .+....   ....+++||+.+++.......+..     .+.++...++ ++|+
T Consensus        78 ~~~~~~~~----~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           78 AIQEGQSS----MADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIPIPYD-----AVGIAISPNGNGLIL  144 (331)
T ss_dssp             EEEECSSC----CCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEECCTT-----EEEEEECTTSSCEEE
T ss_pred             ecccCCCC----ccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEECCCC-----ccceEECCCCCEEEE
Confidence            22221111    1212222  33566 332211   122699999999887554432221     1344444444 5777


Q ss_pred             EecCCCCcccCc-EEEEECCCCc-eEeeeecCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCcceEEEEECCCCcE-EE
Q 012184          171 FGGCSHSIFFND-LHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLAW-SI  245 (469)
Q Consensus       171 ~GG~~~~~~~~~-i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~  245 (469)
                      .+..+     +. +.+|++.... ....... ..+.......++.. ++ .+|+.+..     .+.+.+||+.+... ..
T Consensus       145 ~~~~~-----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~  213 (331)
T 3u4y_A          145 IDRSS-----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITL  213 (331)
T ss_dssp             EEETT-----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEE
T ss_pred             EecCC-----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccce
Confidence            65432     35 7777765432 1111000 01112222333333 34 46666542     24689999987664 11


Q ss_pred             eccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          246 LTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       246 ~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      +..++...    ....   +.+.+ +.++|+....    .+.++++|+.+...
T Consensus       214 ~~~~~~~~----~~~~---~~~spdg~~l~v~~~~----~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          214 LNAVGTNN----LPGT---IVVSRDGSTVYVLTES----TVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEEECSS----CCCC---EEECTTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred             eeeccCCC----CCce---EEECCCCCEEEEEEcC----CCEEEEEECCCCce
Confidence            11121111    0111   22333 3456665442    33588899877655

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.75  E-value=0.34  Score=45.92  Aligned_cols=202  Identities=8%  Similarity=-0.019  Sum_probs=97.3

Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  154 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~  154 (469)
                      ...++.+|+.++....+...   + ... ......  ++. |++... .........++++|+.+..+..+..    ..+
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~---~-~~~-~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~----~~~  236 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQD---T-AWL-GHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE----HAE  236 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEE---S-SCE-EEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC----CCT
T ss_pred             cceEEEEECCCCcEEeeccC---C-ccc-ccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec----cCC
Confidence            34789999999887776521   1 111 122222  244 544432 2211123579999998887766542    111


Q ss_pred             CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCC------
Q 012184          155 RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN------  226 (469)
Q Consensus       155 r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~------  226 (469)
                      ........+ .++..+++...........++++|+.++....+..   .+.  .. .+..- +++++++.+.+.      
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~  310 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMVGDGCDAPVDVAD  310 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEEEEECCC------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEEEecCCcceeecc
Confidence            111111222 24443333332222212349999998887766542   121  11 22222 566666654321      


Q ss_pred             -----CCCcceEEEEECCCCcEEEeccCCCCCC---CCCC-CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          227 -----NNGCQETIVLNMTKLAWSILTSVKGRNP---LASE-GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       227 -----~~~~~d~~~~d~~~~~W~~~~~~~~~~p---~~r~-~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                           ......++++|+.+.....+........   ..+. ......+..+ +.+|+......+  ...+|.+++....+
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~s~~~~--~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPN-DDGVLFTSDFEG--VPAIYIADVPESYK  387 (396)
T ss_dssp             ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTS--SCEEEEEECCTTCC
T ss_pred             ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccC-CCeEEEEecCCC--CceEEEEEEccccc
Confidence                 1123579999998877665543221100   0000 0111122222 334544443332  45799999877665


Q ss_pred             C
Q 012184          298 P  298 (469)
Q Consensus       298 ~  298 (469)
                      .
T Consensus       388 ~  388 (396)
T 3c5m_A          388 H  388 (396)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.73  E-value=1.1  Score=46.49  Aligned_cols=150  Identities=9%  Similarity=-0.025  Sum_probs=77.9

Q ss_pred             cceEEEEECCCCeE--EEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCC
Q 012184           78 SMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  153 (469)
Q Consensus        78 ~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~  153 (469)
                      ...++.+++.+..-  ..+.   ..+........+.+  +++.++++.....  ..++++++|..+..|..+....    
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~----  271 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGV----  271 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECS----
T ss_pred             CCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCC----
Confidence            34599999988763  2222   11211112222223  3443344332221  3567999988778888876321    


Q ss_pred             CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc---eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCc
Q 012184          154 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC  230 (469)
Q Consensus       154 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~  230 (469)
                      . .....+...++ +|+....+  .....++++|+.+..   |..+..  ..+ ...-..+...++.+++....++   .
T Consensus       272 ~-~~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~-~~~l~~~~~~~~~lv~~~~~dg---~  341 (695)
T 2bkl_A          272 G-AKYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPARASWKEIVP--EDS-SASLLSVSIVGGHLSLEYLKDA---T  341 (695)
T ss_dssp             S-CCEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEEC--CCS-SCEEEEEEEETTEEEEEEEETT---E
T ss_pred             C-ceEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCCccCCeEEec--CCC-CCeEEEEEEECCEEEEEEEECC---E
Confidence            1 11222223344 66654432  223679999987754   877642  111 1122233444788877755322   4


Q ss_pred             ceEEEEECCCCcEEEe
Q 012184          231 QETIVLNMTKLAWSIL  246 (469)
Q Consensus       231 ~d~~~~d~~~~~W~~~  246 (469)
                      ..+|.+|+....-..+
T Consensus       342 ~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTV  357 (695)
T ss_dssp             EEEEEEETTCCEEEEC
T ss_pred             EEEEEEeCCCCeeEEe
Confidence            5789999765443433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.72  E-value=1.5  Score=41.78  Aligned_cols=201  Identities=9%  Similarity=0.017  Sum_probs=95.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecC--CCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLD  136 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d  136 (469)
                      ++.+++.|+.++      .+.+||+.++........  ..+........++.+  ++ .+++.|+.+      ..+.+||
T Consensus        93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd  160 (402)
T 2aq5_A           93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWD  160 (402)
T ss_dssp             CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEE
T ss_pred             CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEE
Confidence            566777776432      388888887643110000  000001111222333  22 467677654      3489999


Q ss_pred             CCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184          137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D  215 (469)
Q Consensus       137 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~  215 (469)
                      +.+......-..  ......-.++....++.+++.|+.+     ..+.+||+.+..-...... .....+. ..++.. +
T Consensus       161 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~~-~~~~~~~~  231 (402)
T 2aq5_A          161 VGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDR-PHEGTRP-VHAVFVSE  231 (402)
T ss_dssp             TTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEEC-SSCSSSC-CEEEECST
T ss_pred             CCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeecc-CCCCCcc-eEEEEcCC
Confidence            998876543210  0111112233333355567777644     4689999987764332101 1111112 223333 5


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcE-EEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      +.+++.|...  .....+.+||+.+..- .........       .....+...+ +..|++.|+.++    .+.+||+.
T Consensus       232 ~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~g~~dg----~i~i~d~~  298 (402)
T 2aq5_A          232 GKILTTGFSR--MSERQVALWDTKHLEEPLSLQELDTS-------SGVLLPFFDPDTNIVYLCGKGDS----SIRYFEIT  298 (402)
T ss_dssp             TEEEEEEECT--TCCEEEEEEETTBCSSCSEEEECCCC-------SSCEEEEEETTTTEEEEEETTCS----CEEEEEEC
T ss_pred             CcEEEEeccC--CCCceEEEEcCccccCCceEEeccCC-------CceeEEEEcCCCCEEEEEEcCCC----eEEEEEec
Confidence            6676666211  1134688999876431 011111111       1122223333 456667776554    47777776


Q ss_pred             CCC
Q 012184          294 PRD  296 (469)
Q Consensus       294 ~~~  296 (469)
                      +..
T Consensus       299 ~~~  301 (402)
T 2aq5_A          299 SEA  301 (402)
T ss_dssp             SST
T ss_pred             CCC
Confidence            554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.70  E-value=2.4  Score=43.93  Aligned_cols=124  Identities=15%  Similarity=0.086  Sum_probs=69.7

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCC-----CCCCcceEEEEECCEEEEEeccCCCCCc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV-----PVARGGHSVTLVGSRLIIFGGEDRSRKL  128 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~-----p~~r~~~~~~~~~~~lyi~GG~~~~~~~  128 (469)
                      .+-++.++.||+....       ..++.+|..|++  |+.-......     .......+.++.+++||+...       
T Consensus        60 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  125 (668)
T 1kv9_A           60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (668)
T ss_dssp             CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             cCCEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------
Confidence            3445679999998642       349999998886  8864321000     000112234556788876431       


Q ss_pred             cCcEEEEECCCCe--EEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184          129 LNDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       129 ~~~v~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  196 (469)
                      ...++.+|..|++  |+....  ..+.. ....+.++. ++.+|+..+.........++.||+.+++  |..-
T Consensus       126 dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          126 DGRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             TSEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEeeeeccC--CCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            3459999998875  876431  11111 111222333 6666663322111233579999998876  8764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.69  E-value=0.068  Score=58.28  Aligned_cols=16  Identities=13%  Similarity=0.457  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 012184          429 IENEVQILRQQKSAFE  444 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~  444 (469)
                      |++|.+.++|++..++
T Consensus      1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444333

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.69  E-value=0.23  Score=46.99  Aligned_cols=202  Identities=10%  Similarity=0.057  Sum_probs=85.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-E-CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-V-GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~-~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+..........++.|+..++.-...... .......+..++. . ++.++ .++.+      ..|.+||+.+
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~l-~~s~d------g~v~lWd~~~  124 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGIL-VASDS------GAVELWEILE  124 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEEE-EEETT------SCEEEC----
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCEE-EEECC------CEEEEeeccc
Confidence            677778777543322234577777655431100000 0000111122222 2 34554 45433      2488888876


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  217 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  217 (469)
                      ++-..............-.++....++..++.|+.+     ..|.++|+.+.+-...-   ..... .-.+++..  ++.
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~~~~~~---~~h~~-~v~~v~~s~~~~~  195 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKAVLKSY---NAHSS-EVNCVAACPGKDT  195 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTEEEEEE---CCCSS-CEEEEEECTTCSS
T ss_pred             cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE---cCCCC-CEEEEEEccCCCc
Confidence            643221100000001111222333356677777755     35889998877644321   11111 11122222  234


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +++.+|.++     .+.+||+.+..-.......      ........+...+ +..+++.|+.++    .+.+||+.+.
T Consensus       196 ~~~s~~~dg-----~v~~wd~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~~la~g~~d~----~i~~wd~~~~  259 (357)
T 4g56_B          196 IFLSCGEDG-----RILLWDTRKPKPATRIDFC------ASDTIPTSVTWHPEKDDTFACGDETG----NVSLVNIKNP  259 (357)
T ss_dssp             CEEEEETTS-----CEEECCTTSSSCBCBCCCT------TCCSCEEEEEECTTSTTEEEEEESSS----CEEEEESSCG
T ss_pred             eeeeeccCC-----ceEEEECCCCceeeeeeec------cccccccchhhhhcccceEEEeeccc----ceeEEECCCC
Confidence            677776432     4677887765422111110      0111222333333 456777887655    3778887654

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.67  E-value=0.27  Score=41.27  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184          392 SKELSSVQGQLVAERSRCFKLEAQIAELQK  421 (469)
Q Consensus       392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~  421 (469)
                      +.++..++.....++.++.++++..-++++
T Consensus        94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr  123 (189)
T 2v71_A           94 EDDLSQTRAIKEQLHKYVRELEQANDDLER  123 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            333333333333444444444443333333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.64  E-value=2.3  Score=43.36  Aligned_cols=125  Identities=13%  Similarity=0.059  Sum_probs=67.4

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEEC-CCCe--EEEeecCCC--CCCC---CcceEEEE--ECCE----EEEEec
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETNL--CGVMETSGK--VPVA---RGGHSVTL--VGSR----LIIFGG  121 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~g~--~p~~---r~~~~~~~--~~~~----lyi~GG  121 (469)
                      .+-++.++.||+.+..      ...++.||. .|++  |+.-.....  .+..   ....+.++  .++.    ||+...
T Consensus        56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL  129 (599)
T ss_dssp             SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred             eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence            3446679999998652      224999999 7876  887542110  0000   11123344  4666    766421


Q ss_pred             cCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184          122 EDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       122 ~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  196 (469)
                             ...++.+|..|++  |+.-..  ..... ....+-++. ++.+|+-.+.........++.||..+++  |..-
T Consensus       130 -------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          130 -------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             -------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             -------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence                   2359999998875  875421  11000 111122334 6666653321111123579999998876  8764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.63  E-value=1.6  Score=41.42  Aligned_cols=191  Identities=10%  Similarity=0.011  Sum_probs=94.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCC-----------CCcceEEEEECCEEEEEeccCCCCCccC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV-----------ARGGHSVTLVGSRLIIFGGEDRSRKLLN  130 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~-----------~r~~~~~~~~~~~lyi~GG~~~~~~~~~  130 (469)
                      ++..++.|+.++      .+..||+.++...........+.           ...-..++...+..++.|+.+      .
T Consensus       160 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g  227 (425)
T 1r5m_A          160 DGTHIISMDVEN------VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------G  227 (425)
T ss_dssp             TSSEEEEEETTC------CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------G
T ss_pred             CCCEEEEEecCC------eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------C
Confidence            455555665432      28899998887554432111110           000222222333445666543      3


Q ss_pred             cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceE
Q 012184          131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  210 (469)
Q Consensus       131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  210 (469)
                      .+.+||+.+..-.....  .  ....-.++....++.+++.|+.+     ..+.+||+.+.......   . .....-.+
T Consensus       228 ~i~~~d~~~~~~~~~~~--~--~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~-~~~~~i~~  294 (425)
T 1r5m_A          228 AIFVYQITEKTPTGKLI--G--HHGPISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCF---Y-GHSQSIVS  294 (425)
T ss_dssp             CEEEEETTCSSCSEEEC--C--CSSCEEEEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEE---C-CCSSCEEE
T ss_pred             eEEEEEcCCCceeeeec--c--CCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEe---c-CCCccEEE
Confidence            58999988764322110  0  11112233333455566666644     35888998765433221   1 11112233


Q ss_pred             EEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184          211 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM  290 (469)
Q Consensus       211 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  290 (469)
                      ++...+.+++.|+.+     ..+.+||+.+..-....  ...      ...+..+...+++.++++|+.++    .+.+|
T Consensus       295 ~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~~~------~~~i~~~~~s~~~~~l~~~~~dg----~i~i~  357 (425)
T 1r5m_A          295 ASWVGDDKVISCSMD-----GSVRLWSLKQNTLLALS--IVD------GVPIFAGRISQDGQKYAVAFMDG----QVNVY  357 (425)
T ss_dssp             EEEETTTEEEEEETT-----SEEEEEETTTTEEEEEE--ECT------TCCEEEEEECTTSSEEEEEETTS----CEEEE
T ss_pred             EEECCCCEEEEEeCC-----CcEEEEECCCCcEeEec--ccC------CccEEEEEEcCCCCEEEEEECCC----eEEEE
Confidence            444433366666643     36889998776533221  111      11233444455566777777654    47788


Q ss_pred             ECCC
Q 012184          291 RLKP  294 (469)
Q Consensus       291 d~~~  294 (469)
                      |+.+
T Consensus       358 ~~~~  361 (425)
T 1r5m_A          358 DLKK  361 (425)
T ss_dssp             ECHH
T ss_pred             ECCC
Confidence            8754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.61  E-value=1.5  Score=41.20  Aligned_cols=210  Identities=10%  Similarity=-0.006  Sum_probs=94.6

Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      ...++.+|+.++.-..+...   + ....+....- +++.+++............++.+|+.+.....+..   ......
T Consensus       167 ~~~l~~~d~~~g~~~~l~~~---~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~  239 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVILQE---N-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGES  239 (388)
T ss_dssp             CEEEEEEETTTCCEEEEEEE---S-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEE
T ss_pred             cceEEEEECCCCceEEeecC---C-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcc
Confidence            36799999999987666521   1 1222222222 34444443322222235679999998877665542   111111


Q ss_pred             CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC---CCCcceEEEEECCEEEEEec---CCCCCCc
Q 012184          157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV---TGRAGHAGITIDENWYIVGG---GDNNNGC  230 (469)
Q Consensus       157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p---~~r~~~~~~~~~~~l~v~GG---~~~~~~~  230 (469)
                      ........|++.+++...........++++|+.+++-..+.......   ......+...-+..|++...   .......
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  319 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND  319 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence            11122222443333322221111124999999988766554211100   00011112222333333210   0011224


Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCC---CCC-CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          231 QETIVLNMTKLAWSILTSVKGRNPL---ASE-GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       231 ~d~~~~d~~~~~W~~~~~~~~~~p~---~r~-~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      ..++++|+.+..-..+.........   .+. ......+..+ +.+|+.....++  ...+|.+++....|
T Consensus       320 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD-g~~l~~~s~~~g--~~~l~~~~l~~~~~  387 (388)
T 3pe7_A          320 PFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD-DKQILFTSDVHG--KPALYLATLPESVW  387 (388)
T ss_dssp             CEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred             CEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCC-CCEEEEEecCCC--ceeEEEEECChhcc
Confidence            5799999998887766543321100   000 0111223222 234554443333  45799999876655

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.58  E-value=1.1  Score=42.86  Aligned_cols=152  Identities=16%  Similarity=0.063  Sum_probs=76.8

Q ss_pred             EEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           64 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        64 ~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      .+++.|+.++      .+..||+.++.....-.   .........++.+  ++.+++.|+.+      ..+.+||+.+..
T Consensus       145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  209 (402)
T 2aq5_A          145 NVLLSAGCDN------VILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGT  209 (402)
T ss_dssp             TEEEEEETTS------CEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTE
T ss_pred             CEEEEEcCCC------EEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCc
Confidence            5777776542      28999999887554331   0111112223333  45666666643      359999999877


Q ss_pred             EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce-EeeeecCCCCCCCcceEEEEE-C-CEE
Q 012184          142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQPEIKGDLVTGRAGHAGITI-D-ENW  218 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~~-~-~~l  218 (469)
                      -......+  ........++...++.+++.|....  ....+.+||+.+..- ....   .........+++.. + ..+
T Consensus       210 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l  282 (402)
T 2aq5_A          210 VVAEKDRP--HEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQ---ELDTSSGVLLPFFDPDTNIV  282 (402)
T ss_dssp             EEEEEECS--SCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEE---ECCCCSSCEEEEEETTTTEE
T ss_pred             eeeeeccC--CCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEE---eccCCCceeEEEEcCCCCEE
Confidence            54332111  1111123344445777777763111  125688999876442 1111   11111112233333 3 345


Q ss_pred             EEEecCCCCCCcceEEEEECCCCc
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      ++.|+.+     ..+.+||+.+..
T Consensus       283 ~~~g~~d-----g~i~i~d~~~~~  301 (402)
T 2aq5_A          283 YLCGKGD-----SSIRYFEITSEA  301 (402)
T ss_dssp             EEEETTC-----SCEEEEEECSST
T ss_pred             EEEEcCC-----CeEEEEEecCCC
Confidence            5666533     257788887665

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.56  E-value=1.5  Score=40.65  Aligned_cols=195  Identities=14%  Similarity=0.106  Sum_probs=91.4

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCC--CeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++..++.|+.+.      .+..+|+..  ..+..+...   ........++.+  ++.+++.|+.+.      .+.++|.
T Consensus       118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRDK------SVWIWETDESGEEYECISVL---QEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETTS------CEEEEECCTTCCCCEEEEEE---CCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred             CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEe---ccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence            566666766443      278888743  234433311   111112223333  355667776543      3778888


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcC--cEEEEEecCCCCcccCcEEEEECCC------CceEeeeecCCCCCCCcce
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQT------NEWSQPEIKGDLVTGRAGH  209 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~------~~W~~~~~~~~~p~~r~~~  209 (469)
                      .+..|..+........+  -.++....+  +..++.|+.+.     .+.++|+.+      ..|..+..... .....-.
T Consensus       183 ~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~  254 (330)
T 2hes_X          183 YDDDWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVY  254 (330)
T ss_dssp             ETTEEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEE
T ss_pred             CCCCeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeeccc-ccccceE
Confidence            77777665432111111  112222222  44566666543     355565532      23544432111 1112222


Q ss_pred             EEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC-CCCCCCCCCcceEEEEEcC--CcEEEEEeccCCCCCce
Q 012184          210 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEG--EHHLVAFGGYNGKYNNE  286 (469)
Q Consensus       210 ~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~-~~~p~~r~~~s~~~~~~~~--~~~l~v~GG~~~~~~~~  286 (469)
                      +++...+.+++.||.++     .+.+||..+..|..+.... ...     .+.+..+...+  ++.+++.||.++    .
T Consensus       255 ~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~h~-----~~~v~~v~~~~~~~~~~las~s~Dg----~  320 (330)
T 2hes_X          255 NVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVFAKRALCHG-----VYEINVVKWLELNGKTILATGGDDG----I  320 (330)
T ss_dssp             EEEECTTSCEEEEETTS-----CEEEEEEETTEEEEEEEESCTTT-----TSCEEEEEEC-----CCEEEEETTS----E
T ss_pred             EEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEEeccccccc-----cceEEEEEEecCCCceEEEEecCCC----c
Confidence            33333455666776432     4677888888886543321 111     11222222222  356778888765    3


Q ss_pred             EEEEECC
Q 012184          287 VFVMRLK  293 (469)
Q Consensus       287 ~~~~d~~  293 (469)
                      +.++|+.
T Consensus       321 v~~W~~~  327 (330)
T 2hes_X          321 VNFWSLE  327 (330)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEec
Confidence            6667654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.66  Score=44.20  Aligned_cols=197  Identities=13%  Similarity=0.076  Sum_probs=94.3

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCe------EEEeecCCCCCCCCcceEEEEE--C-CEEEEEeccCCCCCccCcEE
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVH  133 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~------W~~~~~~g~~p~~r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~  133 (469)
                      +.+++.|+.++      .+..||+.+..      -....  ...........++.+  + +.+++.|+.+      ..+.
T Consensus       126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~  191 (416)
T 2pm9_A          126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSS------NFAS  191 (416)
T ss_dssp             TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEE
T ss_pred             CCEEEEEcCCC------eEEEEECCCCcccccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEE
Confidence            66777776432      28888887764      11110  001111111222233  2 4677777654      3489


Q ss_pred             EEECCCCeEEEeeeCCCCCCC-CCCceEEEEc-Cc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC--CCCcc
Q 012184          134 FLDLETMTWDAVEVTQTPPAP-RYDHSAALHA-NR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--TGRAG  208 (469)
Q Consensus       134 ~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~~-~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--~~r~~  208 (469)
                      +||+.+............... ......+.+. ++ .+++.|+.+..  ...+.+||+.+..-...    ...  ....-
T Consensus       192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~~~----~~~~~~~~~v  265 (416)
T 2pm9_A          192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTPLQ----TLNQGHQKGI  265 (416)
T ss_dssp             EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSCSB----CCCSCCSSCE
T ss_pred             EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCCcE----EeecCccCce
Confidence            999998875443311100000 1222233332 32 46666665431  12688899876531111    111  11112


Q ss_pred             eEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc-EEEEEeccCCCCCc
Q 012184          209 HAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNN  285 (469)
Q Consensus       209 ~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~-~l~v~GG~~~~~~~  285 (469)
                      .+++..  ++.+++.|+.+     ..+.+||+.+..-..  .+....      ..+..+...+++ .+++.|+.++    
T Consensus       266 ~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~--~~~~~~------~~v~~~~~s~~~~~~l~s~~~d~----  328 (416)
T 2pm9_A          266 LSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAEQLS--QFPARG------NWCFKTKFAPEAPDLFACASFDN----  328 (416)
T ss_dssp             EEEEECSSCSSCEEEEESS-----SEEEEECSSSCCEEE--EEECSS------SCCCCEEECTTCTTEEEECCSSS----
T ss_pred             eEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCccce--eecCCC------CceEEEEECCCCCCEEEEEecCC----
Confidence            223332  45677777743     358888987765332  111111      011122233343 6778887655    


Q ss_pred             eEEEEECCCCC
Q 012184          286 EVFVMRLKPRD  296 (469)
Q Consensus       286 ~~~~~d~~~~~  296 (469)
                      .+.+||+....
T Consensus       329 ~i~iw~~~~~~  339 (416)
T 2pm9_A          329 KIEVQTLQNLT  339 (416)
T ss_dssp             EEEEEESCCCC
T ss_pred             cEEEEEccCCC
Confidence            47888886543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.54  E-value=0.38  Score=45.32  Aligned_cols=147  Identities=7%  Similarity=0.001  Sum_probs=73.7

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE-c-CcEEEEEecCCCCcccCcEEEEECCC
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQT  190 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~  190 (469)
                      ++.+++.|+.+.      .|.++|+.+++-...- .+    ....-..+.+ . +..+++.|+.+     +.+.++|+.+
T Consensus       138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-~~----h~~~V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~  201 (344)
T 4gqb_B          138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-RA----HAAQVTCVAASPHKDSVFLSCSED-----NRILLWDTRC  201 (344)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC----CSSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTS
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE-cC----cCCceEEEEecCCCCCceeeeccc-----cccccccccc
Confidence            456777776543      3889999988654322 11    1111122222 2 33477777655     3588899887


Q ss_pred             CceEeeeecCCCCCCCc-ceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEE
Q 012184          191 NEWSQPEIKGDLVTGRA-GHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII  267 (469)
Q Consensus       191 ~~W~~~~~~~~~p~~r~-~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~  267 (469)
                      .+-...-   ....... ..+++..  ++.+++.|+.+     ..+.+||+.+.+-  +..+.+..      ..+..+..
T Consensus       202 ~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~--~~~~~~h~------~~v~~v~f  265 (344)
T 4gqb_B          202 PKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSC--VLSSAVHS------QCVTGLVF  265 (344)
T ss_dssp             SSCEEEC---C----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--C--CEEEECCS------SCEEEEEE
T ss_pred             cceeeee---ecceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcE--EEEEcCCC------CCEEEEEE
Confidence            6543311   1111111 1122322  45677777743     2577888876532  11111111      12233344


Q ss_pred             cCC-cEEEEEeccCCCCCceEEEEECCCC
Q 012184          268 EGE-HHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       268 ~~~-~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .++ ..+++.|+.++.    +.+||..+.
T Consensus       266 sp~g~~~lasgs~D~~----i~vwd~~~~  290 (344)
T 4gqb_B          266 SPHSVPFLASLSEDCS----LAVLDSSLS  290 (344)
T ss_dssp             CSSSSCCEEEEETTSC----EEEECTTCC
T ss_pred             ccCCCeEEEEEeCCCe----EEEEECCCC
Confidence            443 367777876653    777887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.54  E-value=1.7  Score=41.22  Aligned_cols=200  Identities=11%  Similarity=0.049  Sum_probs=92.5

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCC--eEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLD  136 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d  136 (469)
                      ++.+++.|+.++      .+..||+.+.  ....+..   .........++.+   ++.+++.|+.+.      .+.+||
T Consensus        78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg------~v~iwd  142 (416)
T 2pm9_A           78 NNKIIAGALDNG------SLELYSTNEANNAINSMAR---FSNHSSSVKTVKFNAKQDNVLASGGNNG------EIFIWD  142 (416)
T ss_dssp             SSSCEEEEESSS------CEEEECCSSTTSCCCEEEE---CCCSSSCCCEEEECSSSTTBEEEECSSS------CEEBCB
T ss_pred             CCCeEEEEccCC------eEEEeecccccccccchhh---ccCCccceEEEEEcCCCCCEEEEEcCCC------eEEEEE
Confidence            555666666432      2788888761  1112211   1111111222233   256777776442      488888


Q ss_pred             CCCCe------EEEeeeCCCCC-CCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCC--CC
Q 012184          137 LETMT------WDAVEVTQTPP-APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT--GR  206 (469)
Q Consensus       137 ~~t~~------W~~~~~~g~~p-~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~--~r  206 (469)
                      +.+..      -.. .. .... ....-.++....+ +.+++.|+.+     ..+.+||+.+..-...........  ..
T Consensus       143 ~~~~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~  215 (416)
T 2pm9_A          143 MNKCTESPSNYTPL-TP-GQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIHLSYTSPNSGIKQ  215 (416)
T ss_dssp             TTTTSSCTTTCCCB-CC-CCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEEECCCCCSSCCCC
T ss_pred             CCCCcccccccccc-cc-ccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceEEeccccccccCC
Confidence            87764      111 00 0111 1111223333333 4577777654     458999998876543221100000  11


Q ss_pred             cceEEEEEC--CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCC
Q 012184          207 AGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKY  283 (469)
Q Consensus       207 ~~~~~~~~~--~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~  283 (469)
                      .-.+++...  ..+++.|+.++.  ...+.+||+.+..- .+..+..     .....+..+...+ ++.+++.|+.++  
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~~~-----~~~~~v~~~~~s~~~~~~l~s~~~dg--  285 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTLNQ-----GHQKGILSLDWCHQDEHLLLSSGRDN--  285 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCCCS-----CCSSCEEEEEECSSCSSCEEEEESSS--
T ss_pred             ceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEeec-----CccCceeEEEeCCCCCCeEEEEeCCC--
Confidence            222333332  257777765431  12567888876421 1111110     0112233344444 556777777654  


Q ss_pred             CceEEEEECCCC
Q 012184          284 NNEVFVMRLKPR  295 (469)
Q Consensus       284 ~~~~~~~d~~~~  295 (469)
                        .+.+||+.+.
T Consensus       286 --~v~~wd~~~~  295 (416)
T 2pm9_A          286 --TVLLWNPESA  295 (416)
T ss_dssp             --EEEEECSSSC
T ss_pred             --CEEEeeCCCC
Confidence              4777777654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.51  E-value=0.49  Score=47.72  Aligned_cols=201  Identities=10%  Similarity=0.013  Sum_probs=95.7

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      ..++.+|..+..-..+..   .+..+.-+.++.- ++ ++|+.+.      ..+.|.++|+.+++-...-..+..|.+-.
T Consensus       302 g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~  372 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPHPGR  372 (543)
T ss_dssp             TEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred             CeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence            458999987754211111   1112222222222 34 4554432      24568999999998766554455554433


Q ss_pred             CceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCC-----ceEeeeecCCCCCCCcceEEEEE-C-CEEEEEecCCCC-
Q 012184          157 DHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTN-----EWSQPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNN-  227 (469)
Q Consensus       157 ~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~-  227 (469)
                      +... ...+ +.+|+.+..+.    +.|-++|..+.     .|..+........+ .. .+... + ..||+-.-.+.. 
T Consensus       373 g~~~-~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-~~-~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          373 GANF-VHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAELQGQGGG-SL-FIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             CEEE-EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSCSC-CC-CEECCTTCCEEEECCTTCSSH
T ss_pred             Cccc-CCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEEEEcCCCC-ce-EEEcCCCCCcEEEecCCCCCc
Confidence            3332 2333 67887764322    46888888762     27766532111111 11 12222 3 345543211111 


Q ss_pred             CCcceEEEEECCCCcEE--Eecc--CCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184          228 NGCQETIVLNMTKLAWS--ILTS--VKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       228 ~~~~d~~~~d~~~~~W~--~~~~--~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~  298 (469)
                      .....+.+||+.+..-.  .++.  ..+. +.  .+.....+.+++ +..+++.-+......+.+.++|..+..-.
T Consensus       446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~-~~--~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          446 RISQSVAVFDLKNLDAKYQVLPIAEWADL-GE--GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCC-CS--SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             ccCceEEEEECCCCCCCeEEeechhhccc-CC--CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence            01457999999876632  2110  0000 00  122333344444 44555442111123567999998776543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.51  E-value=0.058  Score=58.83  Aligned_cols=11  Identities=18%  Similarity=0.413  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 012184          437 RQQKSAFEQEM  447 (469)
Q Consensus       437 ~q~~~~~~~~~  447 (469)
                      .++++.+++++
T Consensus      1029 ~~e~~~L~qq~ 1039 (1080)
T 2dfs_A         1029 KEQNTLLKTEK 1039 (1080)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.49  E-value=1.5  Score=40.15  Aligned_cols=143  Identities=18%  Similarity=0.114  Sum_probs=68.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEE-E-CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-W-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..+|+.+++-...-..+..             . .+ .+.++. - ++.+|+.++.      ...++.+|+.+++-..
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~-------------~-~~-~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~   70 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADA-------------G-PT-PMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTC-------------T-TC-CCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEEEEEcCCC-------------C-CC-ccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEe
Confidence            789999988765443332110             0 01 122222 2 4467777542      2349999999887544


Q ss_pred             eecCCCCCC--CCcceEEEEE-CC-EEEEEecc---CCCCC--ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184           94 METSGKVPV--ARGGHSVTLV-GS-RLIIFGGE---DRSRK--LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA  164 (469)
Q Consensus        94 ~~~~g~~p~--~r~~~~~~~~-~~-~lyi~GG~---~~~~~--~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~  164 (469)
                      ....+. +.  ...-+.++.. ++ .||+....   .....  ..+.+++||+.+.+.......+..     .+.++...
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~  144 (337)
T 1pby_B           71 RIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWAR  144 (337)
T ss_dssp             EEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECT
T ss_pred             eEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECC
Confidence            321111 00  0011122222 33 66665321   11110  136799999998876544322221     12233322


Q ss_pred             Cc-EEEEEecCCCCcccCcEEEEECCCCce
Q 012184          165 NR-YLIVFGGCSHSIFFNDLHVLDLQTNEW  193 (469)
Q Consensus       165 ~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W  193 (469)
                      ++ +||+.+        +.++++|+.+.+-
T Consensus       145 dg~~l~~~~--------~~i~~~d~~~~~~  166 (337)
T 1pby_B          145 DGSKLYGLG--------RDLHVMDPEAGTL  166 (337)
T ss_dssp             TSSCEEEES--------SSEEEEETTTTEE
T ss_pred             CCCEEEEeC--------CeEEEEECCCCcE
Confidence            33 355541        3567777666543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.47  E-value=0.86  Score=41.59  Aligned_cols=195  Identities=9%  Similarity=-0.088  Sum_probs=97.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.||+..-.      ...+++||+.++....+..    + .... +++.. ++.+|+..        .+.+++||+.++
T Consensus        24 ~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~-~~~~-~i~~~~dG~l~v~~--------~~~l~~~d~~~g   83 (297)
T 3g4e_A           24 SNSLLFVDIP------AKKVCRWDSFTKQVQRVTM----D-APVS-SVALRQSGGYVATI--------GTKFCALNWKEQ   83 (297)
T ss_dssp             TTEEEEEETT------TTEEEEEETTTCCEEEEEC----S-SCEE-EEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred             CCEEEEEECC------CCEEEEEECCCCcEEEEeC----C-CceE-EEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence            5788887542      2349999999887655542    1 1111 22222 45666542        245999999999


Q ss_pred             eEEEeeeCCCCCCCCC-CceEEEEcCcEEEEEecCCC------CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE
Q 012184          141 TWDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSH------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT  213 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~-~~~~~~~~~~~l~v~GG~~~------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~  213 (469)
                      +++.+...... .+.. ...++...++.+|+..-...      ......+|++++.. ....+..  ..   .....++.
T Consensus        84 ~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~---~~pngi~~  156 (297)
T 3g4e_A           84 SAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QV---DISNGLDW  156 (297)
T ss_dssp             EEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EE---SBEEEEEE
T ss_pred             cEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee--cc---ccccceEE
Confidence            98877542111 1111 12233334666776321111      01234688888753 3333221  11   11123333


Q ss_pred             E--CCEEEEEecCCCCCCcceEEEEEC--CCCcEEE---eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCce
Q 012184          214 I--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSI---LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE  286 (469)
Q Consensus       214 ~--~~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~---~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~  286 (469)
                      .  +..+|+....     .+.+++||+  .+.....   +..++..      ......++++.++.|++.....    ..
T Consensus       157 spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~------~~~p~g~~~d~~G~lwva~~~~----~~  221 (297)
T 3g4e_A          157 SLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKE------EQIPDGMCIDAEGKLWVACYNG----GR  221 (297)
T ss_dssp             CTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGG------GCEEEEEEEBTTSCEEEEEETT----TE
T ss_pred             cCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCC------CCCCCeeEECCCCCEEEEEcCC----CE
Confidence            3  2357777542     246888876  4444321   1111110      0112234455566777764322    25


Q ss_pred             EEEEECCCCCCC
Q 012184          287 VFVMRLKPRDIP  298 (469)
Q Consensus       287 ~~~~d~~~~~w~  298 (469)
                      +++||+.+....
T Consensus       222 v~~~d~~tG~~~  233 (297)
T 3g4e_A          222 VIRLDPVTGKRL  233 (297)
T ss_dssp             EEEECTTTCCEE
T ss_pred             EEEEcCCCceEE
Confidence            899999765543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.47  E-value=0.18  Score=38.07  Aligned_cols=69  Identities=19%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHH
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAF  443 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~  443 (469)
                      ..++.++...+....+++.++..++..++.++......+..+.+.+.++...+    +-|.++.-+.+.++.+
T Consensus        26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll   98 (101)
T 3u59_A           26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444555555555555444444444444444443333332    2333444444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=95.41  E-value=0.48  Score=35.98  Aligned_cols=83  Identities=18%  Similarity=0.232  Sum_probs=52.6

Q ss_pred             hhhhhhhHhhhhhhh----cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHH
Q 012184          371 RTENSRFREKIDEVN----STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSA  442 (469)
Q Consensus       371 ~~~~~~l~~~~~~~~----~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~----~~~~~e~e~~~~~q~~~~  442 (469)
                      ..+...++.++....    ..+..+++++..++.....++.++.++++...+++++..    ..+.++..+.+.-....=
T Consensus        16 ~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnal   95 (111)
T 2v66_B           16 KYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAF   95 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            334444444444433    345667777777777777778888888887777776643    344666677666666667


Q ss_pred             HHHHHHHhhhh
Q 012184          443 FEQEMERATSV  453 (469)
Q Consensus       443 ~~~~~~~~~~~  453 (469)
                      ++.++++-..+
T Consensus        96 LE~El~EKe~L  106 (111)
T 2v66_B           96 LESELDEKESL  106 (111)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777643333

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.41  E-value=1.8  Score=40.61  Aligned_cols=166  Identities=12%  Similarity=0.047  Sum_probs=84.3

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  155 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r  155 (469)
                      .+..+|+.++.-...-. +  ...  ...++.+    ++.+++.|+.+.      .+.+||+.+.+....-. +   ...
T Consensus       177 ~v~lwd~~~~~~~~~~~-~--h~~--~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~-~---h~~  241 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFH-G--HGA--DVLCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAFE-T---HES  241 (354)
T ss_dssp             EEEEEETTTCCEEEEEE-C--CSS--CEEEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEEC-C---CSS
T ss_pred             cEEEEeCCCCeEEEEEc-C--CCC--CeEEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEec-C---CCC
Confidence            48888988876433221 1  111  1112222    246777777543      48899998887544321 1   111


Q ss_pred             CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceE
Q 012184          156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET  233 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~  233 (469)
                      .-.++....++.+++.|+.+     ..+.+||+.+..-..+.   ...........+.+  ++.+++.|+.+     ..+
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~---~~~~~~~~~~~~~~s~~g~~l~~g~~d-----~~i  308 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIY---SKESIIFGASSVDFSLSGRLLFAGYND-----YTI  308 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE---CCTTCCSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred             CeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE---cCCCcccceeEEEEeCCCCEEEEEECC-----CcE
Confidence            11222333355577777755     35788998776533222   11111222223333  46677777643     257


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184          234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  281 (469)
Q Consensus       234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~  281 (469)
                      .+||+.+..-.  ..+.+..      ..+..+...+++.+++.|+.++
T Consensus       309 ~vwd~~~~~~~--~~l~~h~------~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          309 NVWDVLKGSRV--SILFGHE------NRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             EEEETTTCSEE--EEECCCS------SCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEECCCCceE--EEEECCC------CcEEEEEECCCCCEEEEEcCCC
Confidence            88998665422  2222111      1233444455667778888665

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.40  E-value=1.5  Score=44.47  Aligned_cols=112  Identities=12%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             ceEEEEc-cCC--ceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--
Q 012184           16 VVMVFDL-RSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--   90 (469)
Q Consensus        16 ~~~~~d~-~~~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--   90 (469)
                      .++.||. .++  .|+.-......      ..  +.+.......+.++.++.||+...       ...++.+|..|++  
T Consensus        74 ~v~AlD~~~tG~~~W~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           74 NTYALNLNDPGKIVWQHKPKQDAS------TK--AVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLALDAKTGKIN  138 (571)
T ss_dssp             CEEEEETTCTTSEEEEECCCCCGG------GG--GGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEE
T ss_pred             EEEEEeCCCCccEEEEEcCCCCcc------cc--ccccccccccccEEECCEEEEEeC-------CCEEEEEECCCCCEE
Confidence            6999999 776  48765432100      00  000000112345667899988743       1349999999885  


Q ss_pred             EEEeecCCCCCCC-CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184           91 CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  145 (469)
Q Consensus        91 W~~~~~~g~~p~~-r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~  145 (469)
                      |+.-..  ..+.. ....+.++.++.+|+-.+... ......++.||+.|++  |+.-
T Consensus       139 W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          139 WEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEECC--CGGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEecCC--CCCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEc
Confidence            875431  11111 112233446788776433211 1124569999998764  7654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.35  E-value=1.7  Score=45.70  Aligned_cols=149  Identities=14%  Similarity=0.062  Sum_probs=71.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCC-eEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ++..++.|+.+      ..+..||+.++ ....... +  ... .-.+++..  ++.+++.|+.+      ..+.+||+.
T Consensus       108 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~--~~~-~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~  171 (814)
T 3mkq_A          108 TKPYVLSGSDD------LTVKLWNWENNWALEQTFE-G--HEH-FVMCVAFNPKDPSTFASGCLD------RTVKVWSLG  171 (814)
T ss_dssp             SSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-C--CSS-CEEEEEEETTEEEEEEEEETT------SEEEEEETT
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCceEEEEEc-C--CCC-cEEEEEEEcCCCCEEEEEeCC------CeEEEEECC
Confidence            44455555532      23888888776 3333221 1  111 11222222  34577776644      348889987


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D  215 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~  215 (469)
                      +..-...... .  .......+....  ++.+++.|+.+     ..+.+||+.+..-...- .+  .. ..-.+++.. +
T Consensus       172 ~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~-~~--~~-~~v~~~~~~~~  239 (814)
T 3mkq_A          172 QSTPNFTLTT-G--QERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATL-EG--HM-SNVSFAVFHPT  239 (814)
T ss_dssp             CSSCSEEEEC-C--CTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEEE-EC--CS-SCEEEEEECSS
T ss_pred             CCcceeEEec-C--CCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEEE-cC--CC-CCEEEEEEcCC
Confidence            6543222111 1  111222233322  55566766644     35889998776533211 11  11 111122222 4


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      +.+++.|+.+     ..+.+||+.+..-
T Consensus       240 ~~~l~~~~~d-----g~v~vwd~~~~~~  262 (814)
T 3mkq_A          240 LPIIISGSED-----GTLKIWNSSTYKV  262 (814)
T ss_dssp             SSEEEEEETT-----SCEEEEETTTCSE
T ss_pred             CCEEEEEeCC-----CeEEEEECCCCcE
Confidence            4567777643     2477888876543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.35  E-value=1.4  Score=39.06  Aligned_cols=193  Identities=9%  Similarity=-0.014  Sum_probs=96.2

Q ss_pred             eeeEEE-CCEEEE-EccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcE
Q 012184           56 HCMVKW-GTKLLI-LGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDV  132 (469)
Q Consensus        56 ~~~~~~-~~~iy~-~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v  132 (469)
                      ++++.. ++.||+ ....      ...+.+||+.+.....+...   .. ..-++++.- ++.||+...       .+.+
T Consensus        27 ~~i~~~~~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~~---~~-~~p~~i~~~~~g~l~v~~~-------~~~i   89 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPFN---GL-YQPQGLAVDGAGTVYVTDF-------NNRV   89 (270)
T ss_dssp             EEEEECTTCCEEEEECSS------SCEEEEECC-----EECCCC---SC-CSCCCEEECTTCCEEEEET-------TTEE
T ss_pred             cceEECCCCCEEEEccCC------CCcEEEecCCCcccceEeeC---Cc-CCcceeEECCCCCEEEEcC-------CCEE
Confidence            344433 567888 4221      23488999877765544311   11 111233333 457887653       2358


Q ss_pred             EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE
Q 012184          133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI  212 (469)
Q Consensus       133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~  212 (469)
                      ++||+.+......... .   ...-+.++...++.+|+....     .+.+++|+..+....... ....   .....++
T Consensus        90 ~~~d~~~~~~~~~~~~-~---~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~-~~~~---~~p~~i~  156 (270)
T 1rwi_B           90 VTLAAGSNNQTVLPFD-G---LNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLP-FTGL---NDPDGVA  156 (270)
T ss_dssp             EEECTTCSCCEECCCC-S---CSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECC-CCSC---CSCCCEE
T ss_pred             EEEeCCCceEeeeecC-C---cCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeec-cccC---CCceeEE
Confidence            9999887654433211 1   112234444446678886532     246888876655443321 1111   1122333


Q ss_pred             EE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          213 TI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       213 ~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      .. ++++|+....     ...+.+||+....-........        .....+.+++++.||+....+    +.+++||
T Consensus       157 ~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~--------~~p~~i~~d~~g~l~v~~~~~----~~v~~~~  219 (270)
T 1rwi_B          157 VDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFTDI--------TAPWGIAVDEAGTVYVTEHNT----NQVVKLL  219 (270)
T ss_dssp             ECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCSSC--------CSEEEEEECTTCCEEEEETTT----SCEEEEC
T ss_pred             EeCCCCEEEEECC-----CCEEEEEecCCCceEeecccCC--------CCceEEEECCCCCEEEEECCC----CcEEEEc
Confidence            33 4678877542     2368899987765433211110        122344555556788776432    3488888


Q ss_pred             CCCC
Q 012184          292 LKPR  295 (469)
Q Consensus       292 ~~~~  295 (469)
                      +...
T Consensus       220 ~~~~  223 (270)
T 1rwi_B          220 AGST  223 (270)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            8654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.35  E-value=0.46  Score=37.64  Aligned_cols=69  Identities=19%  Similarity=0.300  Sum_probs=25.8

Q ss_pred             HHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          355 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      .+.++...+...+.........+..+...+......+..+++.-+..+....+++..+..+..+++.++
T Consensus        17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l   85 (129)
T 2fxo_A           17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKV   85 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            333344444444433333333333333333333333333333333333333334443333333444443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.32  E-value=2  Score=40.65  Aligned_cols=195  Identities=11%  Similarity=0.070  Sum_probs=95.8

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCc-ceEEEEE---CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG-GHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~-~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      +..++.|+.+.      .+..||+.++.-...... ..+.... ....+.+   ++.+++.|+.+.      .+.+||+.
T Consensus       170 ~~~l~s~s~D~------~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~  236 (380)
T 3iz6_a          170 ETRLITGSGDQ------TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLR  236 (380)
T ss_dssp             SSCEEEECTTS------CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETT
T ss_pred             CCEEEEECCCC------cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECC
Confidence            34455555432      288899988875443311 1222211 1222223   457788887653      38888876


Q ss_pred             CCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC--CCC-cceEEEE
Q 012184          139 TMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--TGR-AGHAGIT  213 (469)
Q Consensus       139 t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--~~r-~~~~~~~  213 (469)
                      ...  -..+.  +   ....-.++....++..++.|+.+     ..+.++|+.+..-..........  ... .-.+++.
T Consensus       237 ~~~~~~~~~~--~---h~~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  306 (380)
T 3iz6_a          237 ITSRAVRTYH--G---HEGDINSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF  306 (380)
T ss_dssp             TTCCCCEEEC--C---CSSCCCEEEECTTSSEEEEECSS-----SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred             CCCcceEEEC--C---cCCCeEEEEEecCCCeEEEEcCC-----CeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence            321  11111  1   01111233333466677777765     35889998877543322111100  000 1112222


Q ss_pred             E-CCEEEEEecCCCCCCcceEEEEECCCCcEEE-eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          214 I-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       214 ~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      . ++.+++.|+.+     ..+.+||+.+..-.. +..+...     ....+..+...+++.+++.|+.++.    +.+++
T Consensus       307 s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~sgs~D~~----i~iW~  372 (380)
T 3iz6_a          307 SISGRLLFAGYSN-----GDCYVWDTLLAEMVLNLGTLQNS-----HEGRISCLGLSSDGSALCTGSWDKN----LKIWA  372 (380)
T ss_dssp             CSSSSEEEEECTT-----SCEEEEETTTCCEEEEECCSCSS-----CCCCCCEEEECSSSSEEEEECTTSC----EEEEE
T ss_pred             CCCCCEEEEEECC-----CCEEEEECCCCceEEEEecccCC-----CCCceEEEEECCCCCEEEEeeCCCC----EEEEe
Confidence            2 56677776643     358899987665432 2111110     0111223344456677888887764    66677


Q ss_pred             CCC
Q 012184          292 LKP  294 (469)
Q Consensus       292 ~~~  294 (469)
                      +..
T Consensus       373 ~~~  375 (380)
T 3iz6_a          373 FSG  375 (380)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.31  E-value=1.5  Score=44.34  Aligned_cols=205  Identities=16%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCC--------CCCCcceEEEEECCEEEEEeccCCCCCccCcEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  133 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~--------p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~  133 (469)
                      |..+|+.. +.     .+.+.++|..|.+=.....++.+        |.+|.....+..++..+++--     ...+.++
T Consensus       255 Gk~l~v~n-~~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~  323 (567)
T 1qks_A          255 DKYAIAGA-YW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKIL  323 (567)
T ss_dssp             TTEEEEEE-EE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEE
T ss_pred             CCEEEEEE-cc-----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEE
Confidence            44566653 32     23488899888765443322211        223333322222333333321     1256789


Q ss_pred             EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeec-CCCCCCCcceEE
Q 012184          134 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK-GDLVTGRAGHAG  211 (469)
Q Consensus       134 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~-~~~p~~r~~~~~  211 (469)
                      ++|..+.....+..   .+..+.-|.+....++ ++|+...     ..|.+.++|+.+++-...-.. +..|.|..+...
T Consensus       324 ~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~  395 (567)
T 1qks_A          324 LVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  395 (567)
T ss_dssp             EEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             EEecCCCccceeee---eeccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence            99988766544432   2344555555544444 4555432     247899999998875433334 455555333222


Q ss_pred             EEE--CCEEEEEecCCCCCCcceEEEEECCCC-----cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC--C
Q 012184          212 ITI--DENWYIVGGGDNNNGCQETIVLNMTKL-----AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--K  282 (469)
Q Consensus       212 ~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~-----~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~--~  282 (469)
                       ..  .+.+|+.+-..    ...+.++|..+.     .|+.+..+....     +.++.+.+...+.++||---.+.  .
T Consensus       396 -~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----~g~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          396 -VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPALG-----GGSLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             -EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             -ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEecCC-----CCCEEEEeCCCCCeEEEecCCCCCcc
Confidence             23  24566654211    235778887663     387766554321     12222222222568887542221  1


Q ss_pred             CCceEEEEECCCC
Q 012184          283 YNNEVFVMRLKPR  295 (469)
Q Consensus       283 ~~~~~~~~d~~~~  295 (469)
                      ..+.+.+||+.+.
T Consensus       466 ~~~~v~v~d~~~~  478 (567)
T 1qks_A          466 ISGSVAVFDIKAM  478 (567)
T ss_dssp             HHTCEEEEEGGGC
T ss_pred             cCceEEEEECCcc
Confidence            2457999998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.30  E-value=1.5  Score=40.38  Aligned_cols=202  Identities=8%  Similarity=-0.051  Sum_probs=101.0

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.||+.+...      ..+++||+.++....+...   +.. .-++++.- ++++|+.......  ..+.+++||+.+.
T Consensus        55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~---~~~-~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~  122 (333)
T 2dg1_A           55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVS---HKA-NPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD  122 (333)
T ss_dssp             TSCEEEEETTT------CEEEEECTTTCCEEEEEEC---SSS-SEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred             CCCEEEEECCC------CEEEEEeCCCCcEEEEeeC---CCC-CcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence            56788776532      2499999999988776521   111 12223322 4678776532211  1356999999888


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CC-E
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-N  217 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~  217 (469)
                      ....+..  .......-..++...++.+|+..... .......+++||+.+.+...+...  .   .....++.. ++ .
T Consensus       123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I---SVANGIALSTDEKV  195 (333)
T ss_dssp             SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E---SSEEEEEECTTSSE
T ss_pred             EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C---CcccceEECCCCCE
Confidence            7653321  11112222233444466777754321 112235799999887766554311  0   112233333 33 4


Q ss_pred             EEEEecCCCCCCcceEEEEECCC--CcEEEec-cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTK--LAWSILT-SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~-~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      +|+....     .+.+++||+.+  .....+. ......+.   ......+.+++++.+++....    .+.+++||++.
T Consensus       196 l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~---~~~~~~i~~d~~G~l~v~~~~----~~~v~~~d~~g  263 (333)
T 2dg1_A          196 LWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTG---HEGPDSCCIDSDDNLYVAMYG----QGRVLVFNKRG  263 (333)
T ss_dssp             EEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCS---SSEEEEEEEBTTCCEEEEEET----TTEEEEECTTS
T ss_pred             EEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCC---CCCCCceEECCCCCEEEEEcC----CCEEEEECCCC
Confidence            7776432     24688999853  2332211 00000000   012223445555667766532    23588888743

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.28  E-value=3.3  Score=42.99  Aligned_cols=125  Identities=10%  Similarity=0.045  Sum_probs=69.3

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCC--CC---CCcceEEEEECCEEEEEeccCCCCCcc
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV--PV---ARGGHSVTLVGSRLIIFGGEDRSRKLL  129 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~--p~---~r~~~~~~~~~~~lyi~GG~~~~~~~~  129 (469)
                      +-++.++.||+....       ..++.+|..|++  |+.-......  +.   .....+.++.++.||+-..       .
T Consensus        65 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------d  130 (689)
T 1yiq_A           65 TPIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------D  130 (689)
T ss_dssp             CCEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred             cCEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------C
Confidence            345679999998642       349999998886  8864311100  00   0112234556788877531       3


Q ss_pred             CcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184          130 NDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       130 ~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  196 (469)
                      ..++.+|..|++  |+.-.............+.++. ++.+|+-.+.........++.||..|++  |..-
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            459999998875  8765320110001111222334 6666663322111234579999999876  8764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.28  E-value=1.6  Score=39.23  Aligned_cols=195  Identities=9%  Similarity=0.056  Sum_probs=99.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCc-ceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG-GHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~-~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ++.||+.+...      ..+.+||+.......+...+..+.... -+.++..  ++.||+.+...     .+.+.+||..
T Consensus        40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~  108 (286)
T 1q7f_A           40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQY  108 (286)
T ss_dssp             TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTT
T ss_pred             CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCC
Confidence            56788875432      348999988555444443221111111 2333332  56888875321     3458999965


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  217 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  217 (469)
                      ...-..+..    +....-+.++...++.+|+....     .+.+++||+.......+...+..   .....++.. ++.
T Consensus       109 g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~  176 (286)
T 1q7f_A          109 GQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQE  176 (286)
T ss_dssp             SCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTC---SSEEEEEECSSSE
T ss_pred             CcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCC
Confidence            444333321    11112234444446678886542     25689999765544333211111   112233333 467


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      +|+....     .+.+.+||+.......+.. .+..      .....+.+++++.||+....++   ..+.+||++.
T Consensus       177 l~v~~~~-----~~~i~~~~~~g~~~~~~~~-~g~~------~~p~~i~~d~~G~l~v~~~~~~---~~i~~~~~~g  238 (286)
T 1q7f_A          177 IFISDNR-----AHCVKVFNYEGQYLRQIGG-EGIT------NYPIGVGINSNGEILIADNHNN---FNLTIFTQDG  238 (286)
T ss_dssp             EEEEEGG-----GTEEEEEETTCCEEEEESC-TTTS------CSEEEEEECTTCCEEEEECSSS---CEEEEECTTS
T ss_pred             EEEEECC-----CCEEEEEcCCCCEEEEEcc-CCcc------CCCcEEEECCCCCEEEEeCCCC---EEEEEECCCC
Confidence            8887542     2468999986654444432 1100      1223345555667887764331   1588888654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.17  E-value=1.9  Score=39.63  Aligned_cols=189  Identities=14%  Similarity=0.115  Sum_probs=86.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-------CCEEEEEeccCCCCCccCcEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-------GSRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-------~~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      ++.+++.|+.+.      .+..+|+....-..+.  +  ... .-..+...       ++.+++.||.+.      .+.+
T Consensus       118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~--~--h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~  180 (319)
T 3frx_A          118 KASMIISGSRDK------TIKVWTIKGQCLATLL--G--HND-WVSQVRVVPNEKADDDSVTIISAGNDK------MVKA  180 (319)
T ss_dssp             TSCEEEEEETTS------CEEEEETTSCEEEEEC--C--CSS-CEEEEEECCC------CCEEEEEETTS------CEEE
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCeEEEEe--c--cCC-cEEEEEEccCCCCCCCccEEEEEeCCC------EEEE
Confidence            556677776543      2777887655433332  1  011 01111111       223555555432      4888


Q ss_pred             EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184          135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  214 (469)
Q Consensus       135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  214 (469)
                      ||+.+..-...- .+   ....-.+++...++.+++.|+.+     ..+.++|+.+.+-.... ..  +.  .-.+++..
T Consensus       181 wd~~~~~~~~~~-~~---h~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~-~~--~~--~v~~~~~s  246 (319)
T 3frx_A          181 WNLNQFQIEADF-IG---HNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKAMYTL-SA--QD--EVFSLAFS  246 (319)
T ss_dssp             EETTTTEEEEEE-CC---CCSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEEEEE-EC--CS--CEEEEEEC
T ss_pred             EECCcchhheee-cC---CCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe-cC--CC--cEEEEEEc
Confidence            998877643321 11   11111233333466677777755     35889998776532211 11  11  12233333


Q ss_pred             -CCEEEEEecCCCCCCcceEEEEECCCCcE-EEecc-CCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          215 -DENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTS-VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       215 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~~~~-~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                       ++.+++.+..      ..+.+|++....- ..+.. ...... . .......+...+++.+++.|+.++.    +.+||
T Consensus       247 p~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~spdg~~l~sg~~Dg~----i~vWd  314 (319)
T 3frx_A          247 PNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSK-A-AEPHAVSLAWSADGQTLFAGYTDNV----IRVWQ  314 (319)
T ss_dssp             SSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCG-G-GCCCEEEEEECTTSSEEEEEETTSC----EEEEE
T ss_pred             CCCCEEEEEcC------CCcEEEEeCcCeeeeccCcccccccc-C-cCcceeEEEECCCCCEEEEeecCce----EEEEE
Confidence             3344444331      2355666554322 22211 111000 0 0112233445566677888887663    66666


Q ss_pred             CC
Q 012184          292 LK  293 (469)
Q Consensus       292 ~~  293 (469)
                      +.
T Consensus       315 ~~  316 (319)
T 3frx_A          315 VM  316 (319)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.17  E-value=1.8  Score=41.49  Aligned_cols=147  Identities=12%  Similarity=0.048  Sum_probs=74.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+.+||..++.....-   ....  ..-.++.+  ++.+++.||.+.      .+.+||+.+
T Consensus       119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l---~~h~--~~V~~v~~~~~~~~l~sgs~D~------~i~iwd~~~  181 (410)
T 1vyh_C          119 VFSVMVSASEDA------TIKVWDYETGDFERTL---KGHT--DSVQDISFDHSGKLLASCSADM------TIKLWDFQG  181 (410)
T ss_dssp             SSSEEEEEESSS------CEEEEETTTCCCCEEE---CCCS--SCEEEEEECTTSSEEEEEETTS------CCCEEETTS
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE---eccC--CcEEEEEEcCCCCEEEEEeCCC------eEEEEeCCC
Confidence            455777776543      2888998887643322   1111  11222333  456777777553      366788877


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  217 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  217 (469)
                      ......- .+   ....-.++....++..++.|+.+     ..+.++|+.+..-...- .+    .......+.+  ++.
T Consensus       182 ~~~~~~~-~~---h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~-~~----h~~~v~~~~~~~~g~  247 (410)
T 1vyh_C          182 FECIRTM-HG---HDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKTF-TG----HREWVRMVRPNQDGT  247 (410)
T ss_dssp             SCEEECC-CC---CSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEE-EC----CSSCEEEEEECTTSS
T ss_pred             CceeEEE-cC---CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE-eC----CCccEEEEEECCCCC
Confidence            6543211 01   11111222333355566777654     45889998877543321 11    1111112222  456


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      +++.|+.++     .+.+||+.+....
T Consensus       248 ~l~s~s~D~-----~v~vwd~~~~~~~  269 (410)
T 1vyh_C          248 LIASCSNDQ-----TVRVWVVATKECK  269 (410)
T ss_dssp             EEEEEETTS-----CEEEEETTTCCEE
T ss_pred             EEEEEcCCC-----eEEEEECCCCcee
Confidence            777777532     4677887766543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.15  E-value=0.49  Score=45.93  Aligned_cols=149  Identities=13%  Similarity=0.153  Sum_probs=72.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.+++.|+.++      .+.++|+.++....+.....  ......++... ++.+++.|+.+      ..|.++|+.+.
T Consensus       176 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~  241 (435)
T 4e54_B          176 NTNQFYASSMEG------TTRLQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGK  241 (435)
T ss_dssp             CTTEEEEECSSS------CEEEEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSC
T ss_pred             CCCEEEEEeCCC------EEEEeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcc
Confidence            456777776543      28888998887666553211  11111222222 45677777644      34888898654


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CC
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE  216 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~  216 (469)
                      .-..+.      .....-..+.+.  ++.+++.|+.+.     .|.+||+.+..-...... .... ...-..+.+  ++
T Consensus       242 ~~~~~~------~h~~~v~~v~~~p~~~~~~~s~s~d~-----~v~iwd~~~~~~~~~~~~-~~~h-~~~v~~~~~spdg  308 (435)
T 4e54_B          242 ELWNLR------MHKKKVTHVALNPCCDWFLATASVDQ-----TVKIWDLRQVRGKASFLY-SLPH-RHPVNAACFSPDG  308 (435)
T ss_dssp             BCCCSB------CCSSCEEEEEECTTCSSEEEEEETTS-----BCCEEETTTCCSSSCCSB-CCBC-SSCEEECCBCTTS
T ss_pred             eeEEEe------cccceEEeeeecCCCceEEEEecCcc-----eeeEEecccccccceEEE-eeec-cccccceeECCCC
Confidence            321111      111111223332  334666776543     467888766543211000 0000 111111122  45


Q ss_pred             EEEEEecCCCCCCcceEEEEECCCCc
Q 012184          217 NWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       217 ~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      ..++.|+.++     .+.+||+.+..
T Consensus       309 ~~l~s~~~D~-----~i~iwd~~~~~  329 (435)
T 4e54_B          309 ARLLTTDQKS-----EIRVYSASQWD  329 (435)
T ss_dssp             SEEEEEESSS-----CEEEEESSSSS
T ss_pred             CeeEEEcCCC-----EEEEEECCCCc
Confidence            6677776533     47788887643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.14  E-value=2.1  Score=39.92  Aligned_cols=114  Identities=9%  Similarity=0.046  Sum_probs=53.8

Q ss_pred             Cc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CC-EEEEEecCCCCCCcceEEEEEC--
Q 012184          165 NR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNM--  238 (469)
Q Consensus       165 ~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~d~~~~d~--  238 (469)
                      ++ ++|+.+..     .+.+.+||+.++.+..+......+........+.+  ++ .||+.....    .+.+.+|++  
T Consensus       221 dg~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v~~~~~  291 (361)
T 3scy_A          221 DGKFAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAIFKVDE  291 (361)
T ss_dssp             TSSEEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEEEEECT
T ss_pred             CCCEEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEEEEEcC
Confidence            44 57765532     25688999888777655432222332222233333  34 455543320    124555555  


Q ss_pred             CCCcEEEeccCCC-CCCCCCCCcceEEEEEcCCc-EEEEEeccCCCCCceEEEEECCCCCC
Q 012184          239 TKLAWSILTSVKG-RNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       239 ~~~~W~~~~~~~~-~~p~~r~~~s~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      .+..+..+...+. ..|     .   .+.+.+++ +||+.+..++  .-.+|.+|+.+...
T Consensus       292 ~~g~~~~~~~~~~g~~~-----~---~~~~spdg~~l~~~~~~~~--~v~v~~~d~~~g~~  342 (361)
T 3scy_A          292 TNGTLTKVGYQLTGIHP-----R---NFIITPNGKYLLVACRDTN--VIQIFERDQATGLL  342 (361)
T ss_dssp             TTCCEEEEEEEECSSCC-----C---EEEECTTSCEEEEEETTTT--EEEEEEECTTTCCE
T ss_pred             CCCcEEEeeEecCCCCC-----c---eEEECCCCCEEEEEECCCC--CEEEEEEECCCCcE
Confidence            5667766554332 111     1   23344444 5655543322  22355566655543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.11  E-value=2.3  Score=40.22  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=73.8

Q ss_pred             EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc-eEEEEc--CcEEEEEecCCCCcccCcEEEEECCCC
Q 012184          115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-SAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTN  191 (469)
Q Consensus       115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~  191 (469)
                      ..++.|+.+      ..+.+||+.++.-...... ..+...... ..+.+.  ++.+++.|+.+.     .+.++|+...
T Consensus       171 ~~l~s~s~D------~~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~  238 (380)
T 3iz6_a          171 TRLITGSGD------QTCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRIT  238 (380)
T ss_dssp             SCEEEECTT------SCEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTT
T ss_pred             CEEEEECCC------CcEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCC
Confidence            345555543      2488899988775443211 111111111 122221  455788887653     5788887532


Q ss_pred             c--eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEc
Q 012184          192 E--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE  268 (469)
Q Consensus       192 ~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~  268 (469)
                      .  -..+.  +  ... .-.+++.. ++..++.|+.++     .+.++|+.+..-...-....... ......+..+...
T Consensus       239 ~~~~~~~~--~--h~~-~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s  307 (380)
T 3iz6_a          239 SRAVRTYH--G--HEG-DINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRN-DNELPIVTSVAFS  307 (380)
T ss_dssp             CCCCEEEC--C--CSS-CCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSS-CCSSCSCSEEEEC
T ss_pred             CcceEEEC--C--cCC-CeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEeccccccc-ccccCceEEEEEC
Confidence            1  11111  1  111 11123333 456777777543     47788988765433211111100 0000112223334


Q ss_pred             CCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          269 GEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       269 ~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +++.+++.|+.++    .+.+||+...
T Consensus       308 ~~g~~l~~g~~dg----~i~vwd~~~~  330 (380)
T 3iz6_a          308 ISGRLLFAGYSNG----DCYVWDTLLA  330 (380)
T ss_dssp             SSSSEEEEECTTS----CEEEEETTTC
T ss_pred             CCCCEEEEEECCC----CEEEEECCCC
Confidence            4556777777655    4888887554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.11  E-value=1.2  Score=45.64  Aligned_cols=150  Identities=13%  Similarity=0.004  Sum_probs=83.4

Q ss_pred             cceEEEEECC-CC---eEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCC-
Q 012184           78 SMIVRFIDLE-TN---LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT-  150 (469)
Q Consensus        78 ~~~~~~~d~~-t~---~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~-  150 (469)
                      ...++++|+. ++   ....+...   .  ........+  ++++|+.+..+.    ...++++|+.+..+..+..... 
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~---~--~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGG---P--EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEE---T--TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSB
T ss_pred             CcEEEEEEECCCCcccccEEeCCC---C--CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeeccccccc
Confidence            3579999998 67   44444311   1  111222223  567776665432    3469999998999887753211 


Q ss_pred             CCCCCC---CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEE-EEECCEEEEEecCCC
Q 012184          151 PPAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG-ITIDENWYIVGGGDN  226 (469)
Q Consensus       151 ~p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~l~v~GG~~~  226 (469)
                      ...|..   ...+....++++++.+..    ....+|.+|+.+.....+..    +. .....+ ...++.+++..+.. 
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~~----~~-~~~~~~~s~~~~~~~~~~~~~-  356 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK----GAAVLGILDPESGELVDAAG----PW-TEWAATLTVSGTRAVGVAASP-  356 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS----SSCEEEEEETTTTEEEECCS----SC-CEEEEEEEEETTEEEEEEEET-
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc----CccEEEEEECCCCcEEEecC----CC-CeEEEEEecCCCEEEEEEcCC-
Confidence            001111   122333346667766653    23678889998887666531    11 111223 33456666654422 


Q ss_pred             CCCcceEEEEECCCCcEEEec
Q 012184          227 NNGCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       227 ~~~~~d~~~~d~~~~~W~~~~  247 (469)
                       .....+|.+|+.+.....+.
T Consensus       357 -~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          357 -RTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             -TEEEEEEEEETTTCCEEEEE
T ss_pred             -CCCCEEEEEECCCCceEEee
Confidence             12457999999888877764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.10  E-value=1.9  Score=39.22  Aligned_cols=187  Identities=7%  Similarity=-0.059  Sum_probs=90.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+++||+.++.-..+...                  .+....+..-++.+|+..   .     +.+++||+.++.++.+.
T Consensus        36 ~i~~~d~~~~~~~~~~~~------------------~~~~~i~~~~dG~l~v~~---~-----~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           36 KVCRWDSFTKQVQRVTMD------------------APVSSVALRQSGGYVATI---G-----TKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             EEEEEETTTCCEEEEECS------------------SCEEEEEEBTTSSEEEEE---T-----TEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCcEEEEeCC------------------CceEEEEECCCCCEEEEE---C-----CeEEEEECCCCcEEEEE
Confidence            678888887765443321                  111111222255665542   1     24999999999998876


Q ss_pred             cCCC-CCCCCcceEEEEECCEEEEEeccCCC------CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cE
Q 012184           96 TSGK-VPVARGGHSVTLVGSRLIIFGGEDRS------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RY  167 (469)
Q Consensus        96 ~~g~-~p~~r~~~~~~~~~~~lyi~GG~~~~------~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~  167 (469)
                      .... .+..+....++.-+++||+- .....      ......++++++.. ....+..  ....|   ..++...+ +.
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~~~p---ngi~~spdg~~  162 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QVDIS---NGLDWSLDHKI  162 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EESBE---EEEEECTTSCE
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECCC-CEEEEee--ccccc---cceEEcCCCCE
Confidence            3211 12222222222224677653 22111      11245688888753 3333321  11111   23333333 46


Q ss_pred             EEEEecCCCCcccCcEEEEEC--CCCceEeeeecCCCCC-CCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184          168 LIVFGGCSHSIFFNDLHVLDL--QTNEWSQPEIKGDLVT-GRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       168 l~v~GG~~~~~~~~~i~~~d~--~~~~W~~~~~~~~~p~-~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      +|+....     .+.|++|++  .++...........+. ......++.. +++||+....     -..+.+||+.+.+.
T Consensus       163 lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-----~~~v~~~d~~tG~~  232 (297)
T 3g4e_A          163 FYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-----GGRVIRLDPVTGKR  232 (297)
T ss_dssp             EEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-----TTEEEEECTTTCCE
T ss_pred             EEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-----CCEEEEEcCCCceE
Confidence            7776542     356888886  4554432111001111 1111233332 4678876421     13589999987665


Q ss_pred             EE
Q 012184          244 SI  245 (469)
Q Consensus       244 ~~  245 (469)
                      ..
T Consensus       233 ~~  234 (297)
T 3g4e_A          233 LQ  234 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.08  E-value=1.1  Score=41.51  Aligned_cols=219  Identities=14%  Similarity=0.094  Sum_probs=103.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--C---CEEEEEccccCCCCCcceEEEEECCCCe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G---TKLLILGGHYKKSSDSMIVRFIDLETNL   90 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~---~~iy~~GG~~~~~~~~~~~~~~d~~t~~   90 (469)
                      .+..||+.++........+.                 .....++.+  +   +.+++.|+.++      .+..||+.+..
T Consensus        45 ~v~iw~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~  101 (357)
T 3i2n_A           45 VIQLYEIQHGDLKLLREIEK-----------------AKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLEAPE  101 (357)
T ss_dssp             EEEEEEECSSSEEEEEEEEE-----------------SSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTTSCS
T ss_pred             EEEEEeCCCCcccceeeecc-----------------cCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCCCCC
Confidence            78888998887655543321                 111122222  2   46666666432      27888887664


Q ss_pred             --EEEeecCCCCCCCCcceEEEE-------ECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCce
Q 012184           91 --CGVMETSGKVPVARGGHSVTL-------VGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHS  159 (469)
Q Consensus        91 --W~~~~~~g~~p~~r~~~~~~~-------~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~  159 (469)
                        -..+.  +  ... .-.++..       -++.+++.|+.+.      .+.+||+.+..  ...+... .....+...+
T Consensus       102 ~~~~~~~--~--~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~  169 (357)
T 3i2n_A          102 MPVYSVK--G--HKE-IINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWT  169 (357)
T ss_dssp             SCSEEEC--C--CSS-CEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEE
T ss_pred             ccEEEEE--e--ccc-ceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEE
Confidence              12221  0  111 0111111       1345666666432      48889988764  2333210 0001112222


Q ss_pred             EE----EEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE----CCEEEEEecCCCCCCcc
Q 012184          160 AA----LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYIVGGGDNNNGCQ  231 (469)
Q Consensus       160 ~~----~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~  231 (469)
                      +.    ...++.+++.|+.+     ..+.+||+.+..-....   .  ....-.+++..    ++..+++|+.+     .
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~~~l~~~~~d-----g  234 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWET---N--IKNGVCSLEFDRKDISMNKLVATSLE-----G  234 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEE---E--CSSCEEEEEESCSSSSCCEEEEEEST-----T
T ss_pred             EEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeec---C--CCCceEEEEcCCCCCCCCEEEEECCC-----C
Confidence            22    11355566666643     46899999877643321   1  11122233333    45667776643     2


Q ss_pred             eEEEEECCCCc----EEEeccCCCCCCCCCCCcceEEEEEcCCcE-EEEEeccCCCCCceEEEEECCCC
Q 012184          232 ETIVLNMTKLA----WSILTSVKGRNPLASEGLSVCSAIIEGEHH-LVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       232 d~~~~d~~~~~----W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .+.+||+.+..    +... .....      ...+..+...+++. +++.|+.++    .+.+||+...
T Consensus       235 ~i~i~d~~~~~~~~~~~~~-~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~  292 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASV-SEKAH------KSTVWQVRHLPQNRELFLTAGGAG----GLHLWKYEYP  292 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEE-EEECC------SSCEEEEEEETTEEEEEEEEETTS----EEEEEEEECC
T ss_pred             eEEEEeCcCCCcccceeee-ccCCC------cCCEEEEEECCCCCcEEEEEeCCC----cEEEeecCCC
Confidence            56777765421    1100 00011      12233334444445 788888665    4667776543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.07  E-value=2  Score=44.60  Aligned_cols=240  Identities=13%  Similarity=0.026  Sum_probs=114.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+|+.+...+.|..+-.....     +..       .......+.+  +++.++|.-..... ....++++|+.++....
T Consensus        95 ~l~~~~~~~~~~~~l~d~~~~-----a~~-------~~~~~~~~~~SPDG~~la~~~~~~G~-~~~~i~v~dl~tg~~~~  161 (695)
T 2bkl_A           95 ILYWRQGESGQEKVLLDPNGW-----SKD-------GTVSLGTWAVSWDGKKVAFAQKPNAA-DEAVLHVIDVDSGEWSK  161 (695)
T ss_dssp             EEEEEESTTSCCEEEECGGGS-----SSS-------SCEEEEEEEECTTSSEEEEEEEETTC-SCCEEEEEETTTCCBCS
T ss_pred             EEEEEcCCCCCcEEEEchHHh-----ccC-------CCEEEEEEEECCCCCEEEEEECCCCC-ceEEEEEEECCCCCCcC
Confidence            678888777788777653211     000       0011112222  55554543322211 23459999999987531


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCC-------CccCcEEEEECCCCeE--EEeeeCCCCCCCCCCceEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSR-------KLLNDVHFLDLETMTW--DAVEVTQTPPAPRYDHSAAL  162 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~-------~~~~~v~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~  162 (469)
                      ..   ..+....  ..+.+  +++.++++......       .....++++++.+..-  ..+..  ....+........
T Consensus       162 ~~---~~~~~~~--~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--~~~~~~~~~~~~~  234 (695)
T 2bkl_A          162 VD---VIEGGKY--ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--RTGDPTTFLQSDL  234 (695)
T ss_dssp             SC---CBSCCTT--CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--CCCCTTCEEEEEE
T ss_pred             Cc---ccCcccc--cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--cCCCCEEEEEEEE
Confidence            11   1121211  22233  45555555443321       1345699999987752  22221  1111222233333


Q ss_pred             EcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          163 HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       163 ~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      -.+++.+++...... ..+++|+++..+..|..+...    .... ...+..++.+|+....  ......++++|+.+..
T Consensus       235 SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~----~~~~-~~~~~~~g~l~~~s~~--~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          235 SRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKG----VGAK-YEVHAWKDRFYVLTDE--GAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             CTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEEC----SSCC-EEEEEETTEEEEEECT--TCTTCEEEEEBTTBCS
T ss_pred             CCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecC----CCce-EEEEecCCcEEEEECC--CCCCCEEEEEeCCCCC
Confidence            335544455443221 346889998877788877521    1111 2222245665555332  2234579999987654


Q ss_pred             ---EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          243 ---WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       243 ---W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                         |..+......       ..+..+... ++.+++....++  ...+|.+++.
T Consensus       307 ~~~~~~l~~~~~~-------~~l~~~~~~-~~~lv~~~~~dg--~~~l~~~~~~  350 (695)
T 2bkl_A          307 RASWKEIVPEDSS-------ASLLSVSIV-GGHLSLEYLKDA--TSEVRVATLK  350 (695)
T ss_dssp             GGGCEEEECCCSS-------CEEEEEEEE-TTEEEEEEEETT--EEEEEEEETT
T ss_pred             ccCCeEEecCCCC-------CeEEEEEEE-CCEEEEEEEECC--EEEEEEEeCC
Confidence               8776432111       111122222 456666655443  3456666653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.07  E-value=0.32  Score=54.30  Aligned_cols=194  Identities=10%  Similarity=0.021  Sum_probs=91.4

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      ++..++.|+.++      .+..||+.++....+.   .  ....-.+++...+..++.|+.+      ..+.+||+.++.
T Consensus      1014 dg~~l~s~~~dg------~i~vwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~ 1076 (1249)
T 3sfz_A         1014 DGKTLISSSEDS------VIQVWNWQTGDYVFLQ---A--HQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGR 1076 (1249)
T ss_dssp             SSSCEEEECSSS------BEEEEETTTTEEECCB---C--CSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTC
T ss_pred             CCCEEEEEcCCC------EEEEEECCCCceEEEe---c--CCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCc
Confidence            555666666432      3889999998765433   1  1111222233333344555543      348899988776


Q ss_pred             EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEE
Q 012184          142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWY  219 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~  219 (469)
                      -...-. +.   ...-.+++...++..++.|+.++     .+.+||+.+..-..     ...........+.+  ++.++
T Consensus      1077 ~~~~~~-~~---~~~v~~~~~s~d~~~l~s~s~d~-----~v~iwd~~~~~~~~-----~l~~h~~~v~~~~~s~dg~~l 1142 (1249)
T 3sfz_A         1077 IERDFT-CH---QGTVLSCAISSDATKFSSTSADK-----TAKIWSFDLLSPLH-----ELKGHNGCVRCSAFSLDGILL 1142 (1249)
T ss_dssp             CCEEEE-CC---SSCCCCEEECSSSSSCEEECCSS-----CCCEECSSSSSCSB-----CCCCCSSCEEEEEECSSSSEE
T ss_pred             eeEEEc-cc---CCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCcceee-----eeccCCCcEEEEEECCCCCEE
Confidence            432221 11   11112333334555677776543     46778876554211     11111111122222  56677


Q ss_pred             EEecCCCCCCcceEEEEECCCCcEEEe-ccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          220 IVGGGDNNNGCQETIVLNMTKLAWSIL-TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       220 v~GG~~~~~~~~d~~~~d~~~~~W~~~-~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      +.|+.++     .+.+||+.+...... .+.............+..+...+++.+++.+|      ..+.+||+.+...
T Consensus      1143 at~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1143 ATGDDNG-----EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp             EEEETTS-----CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES------SSEEEBCSSSCBC
T ss_pred             EEEeCCC-----EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC------CeEEEEECCCCce
Confidence            7777543     367888876543211 11000000001111223334444455555554      2588888766544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.05  E-value=0.29  Score=44.00  Aligned_cols=39  Identities=10%  Similarity=0.207  Sum_probs=14.1

Q ss_pred             hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      .+++.++..+..++.++.++..++...+..+..++..+.
T Consensus        97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~  135 (256)
T 3na7_A           97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML  135 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=94.99  E-value=2.4  Score=44.42  Aligned_cols=170  Identities=14%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCC--------CCccCc
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRS--------RKLLND  131 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~--------~~~~~~  131 (469)
                      +++.++|+....+. ....++++|+.++........    ...  ...+.+  +..||+ +.....        ......
T Consensus       173 DG~~la~~~~~~G~-e~~~i~v~dl~tg~~~~~~~~----~~~--~~~~~wspD~~l~~-~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          173 DGRLLAYSVQDGGS-DWRTVKFVGVADGKPLADELK----WVK--FSGLAWLGNDALLY-SRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             TSSEEEEEEEETTC-SEEEEEEEETTTCCEEEEEEE----EEE--SCCCEESTTSEEEE-EECCCC--------CCCCCE
T ss_pred             CCCEEEEEEcCCCC-ceEEEEEEECCCCCCCCccCC----Cce--eccEEEECCCEEEE-EEecCcccccccccCCCCCE
Confidence            55555554332221 234699999999987654311    111  111222  323443 332221        112456


Q ss_pred             EEEEECCCCeE--EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC--c-eEeeeecCCCCCCC
Q 012184          132 VHFLDLETMTW--DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN--E-WSQPEIKGDLVTGR  206 (469)
Q Consensus       132 v~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~--~-W~~~~~~~~~p~~r  206 (469)
                      ++++++.+..-  ..+.  .....+........-.|++.+++.........++++++|+.+.  . |..+...   ....
T Consensus       245 v~~~~lgt~~~~~~lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~  319 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVF--ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQ  319 (741)
T ss_dssp             EEEEETTSCGGGCEEEE--CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSC
T ss_pred             EEEEECCCCchhCEEEe--ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCce
Confidence            88899876642  1221  1111122223333333554444443332223578999999877  6 8776521   1111


Q ss_pred             cceEEEEECCEEEEEecCCCCCCcceEEEEECCC--CcEEEec
Q 012184          207 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK--LAWSILT  247 (469)
Q Consensus       207 ~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~  247 (469)
                      .. .+...++.||+....  ......++++|+.+  ..|..+.
T Consensus       320 ~~-~~~~dg~~l~~~s~~--~~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          320 WD-FVDGVGDQLWFVSGD--GAPLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             EE-EEEEETTEEEEEECT--TCTTCEEEEEECSSSSCEEEEEE
T ss_pred             EE-EEeccCCEEEEEECC--CCCCCEEEEEeCCCCccccEEEe
Confidence            11 223446677776432  22245799999987  5788764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=94.96  E-value=3.4  Score=42.88  Aligned_cols=192  Identities=12%  Similarity=-0.052  Sum_probs=98.6

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC-------CCCcceEEEEECCC
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK-------SSDSMIVRFIDLET   88 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~-------~~~~~~~~~~d~~t   88 (469)
                      .++++|+.+++.......                 ..+....+...+..||+... ...       ......++.+++.+
T Consensus       156 ~i~v~dl~tg~~~~~~~~-----------------~~k~~~~~WsDg~~l~y~~~-~~~~~~~~~~~~~~~~v~~~~lgt  217 (693)
T 3iuj_A          156 EIHLMDVESKQPLETPLK-----------------DVKFSGISWLGNEGFFYSSY-DKPDGSELSARTDQHKVYFHRLGT  217 (693)
T ss_dssp             EEEEEETTTCSEEEEEEE-----------------EEESCCCEEETTTEEEEEES-SCCC-------CCCCEEEEEETTS
T ss_pred             EEEEEECCCCCCCccccC-----------------CceeccEEEeCCCEEEEEEe-cCcccccccccCCCcEEEEEECCC
Confidence            678888888886554322                 12222223333444555432 211       02345688888877


Q ss_pred             CeE--EEeecCCCCCC--CCcceEEEE-ECC-EEEEEeccCCCCCccCcEEEEECCCC--eEEEeeeCCCCCCCCCCceE
Q 012184           89 NLC--GVMETSGKVPV--ARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSA  160 (469)
Q Consensus        89 ~~W--~~~~~~g~~p~--~r~~~~~~~-~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~--~W~~~~~~g~~p~~r~~~~~  160 (469)
                      ..=  ..+.   ..+.  +....++.. -++ .|++......   ..++++++|+.+.  .|..+...     .......
T Consensus       218 ~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~~~  286 (693)
T 3iuj_A          218 AQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQGD-----LDADVSL  286 (693)
T ss_dssp             CGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEECS-----SSSCEEE
T ss_pred             CcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeCC-----CCceEEE
Confidence            643  1222   1121  111222222 234 4444432221   2468999998776  67777521     1112222


Q ss_pred             EEEcCcEEEEEecCCCCcccCcEEEEECCCC---ceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184          161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      ....++.||+....+.  ....|+.+|+.+.   .|..+..  ....  .. +....++.|++..-.+   ....++++|
T Consensus       287 ~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~--~~~~--~~-~~s~~g~~lv~~~~~~---g~~~l~~~d  356 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIP--ERQQ--VL-TVHSGSGYLFAEYMVD---ATARVEQFD  356 (693)
T ss_dssp             EEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEEC--CCSS--CE-EEEEETTEEEEEEEET---TEEEEEEEC
T ss_pred             EeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEec--CCCC--EE-EEEEECCEEEEEEEEC---CeeEEEEEE
Confidence            3334677888875432  2457999998764   4877642  1111  12 4445566666553321   245789999


Q ss_pred             CCCCcEEEe
Q 012184          238 MTKLAWSIL  246 (469)
Q Consensus       238 ~~~~~W~~~  246 (469)
                      +.......+
T Consensus       357 ~~g~~~~~l  365 (693)
T 3iuj_A          357 YEGKRVREV  365 (693)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCCeeEEe
Confidence            886655554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=94.96  E-value=1.3  Score=40.90  Aligned_cols=106  Identities=19%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEE-----ECCEEEEEeccCCCCCccCcEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-----VGSRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~-----~~~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      ++.+++.|+.++      .+..||+.+..  ...+... .....+.-.+++.     -++.+++.|+.+      ..+.+
T Consensus       128 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i  194 (357)
T 3i2n_A          128 GAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKL  194 (357)
T ss_dssp             CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEE
T ss_pred             CccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEE
Confidence            455666666432      28888988764  3333210 0011112222221     245666666543      35899


Q ss_pred             EECCCCeEEEeeeCCCCCCCCCCceEEEEc---CcEEEEEecCCCCcccCcEEEEECCC
Q 012184          135 LDLETMTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFNDLHVLDLQT  190 (469)
Q Consensus       135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~l~v~GG~~~~~~~~~i~~~d~~~  190 (469)
                      ||+.+..-.....     ....-.++....   ++..++.|+.+     ..+.+||+.+
T Consensus       195 ~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  243 (357)
T 3i2n_A          195 FDLRNMALRWETN-----IKNGVCSLEFDRKDISMNKLVATSLE-----GKFHVFDMRT  243 (357)
T ss_dssp             EETTTTEEEEEEE-----CSSCEEEEEESCSSSSCCEEEEEEST-----TEEEEEEEEE
T ss_pred             EECccCceeeecC-----CCCceEEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcC
Confidence            9999887543321     111122333322   44566666544     3577888654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.96  E-value=1.4  Score=45.24  Aligned_cols=193  Identities=10%  Similarity=-0.020  Sum_probs=97.2

Q ss_pred             cceEEEEECCC------CeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCC-C-ccCcEEEEECC-CC---eEE
Q 012184           78 SMIVRFIDLET------NLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSR-K-LLNDVHFLDLE-TM---TWD  143 (469)
Q Consensus        78 ~~~~~~~d~~t------~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~-~-~~~~v~~~d~~-t~---~W~  143 (469)
                      ...++.+|+.+      +....+...+    . .....+.+  +++.+++....... . ...+++++|+. ++   ...
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDA----H-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSC----S-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecC----C-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence            35799999988      6655543011    1 11111222  44434443332211 1 13579999998 57   444


Q ss_pred             EeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecC-CCCCCCc---ceEEEEE-CCEE
Q 012184          144 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG-DLVTGRA---GHAGITI-DENW  218 (469)
Q Consensus       144 ~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~-~~p~~r~---~~~~~~~-~~~l  218 (469)
                      .+...    ............|+++|+.+..+.   ...+|++|+.+..+..+.... ....+.+   ....+.. ++.+
T Consensus       235 ~l~~~----~~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~  307 (662)
T 3azo_A          235 TLLGG----PEEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI  307 (662)
T ss_dssp             EEEEE----TTBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred             EeCCC----CCceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE
Confidence            44321    011122233333666776665432   247999999888887764211 0001111   1123333 5666


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEE-EEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      ++.+..    ....+|.+|+.+.....+....        + ....+ ..+++..+|+.++.+  ....+|.+|+.+...
T Consensus       308 ~~~~~~----~~~~l~~~d~~~~~~~~l~~~~--------~-~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          308 AVVHGK----GAAVLGILDPESGELVDAAGPW--------T-EWAATLTVSGTRAVGVAASPR--TAYEVVELDTVTGRA  372 (662)
T ss_dssp             EEEEBS----SSCEEEEEETTTTEEEECCSSC--------C-EEEEEEEEETTEEEEEEEETT--EEEEEEEEETTTCCE
T ss_pred             EEEEEc----CccEEEEEECCCCcEEEecCCC--------C-eEEEEEecCCCEEEEEEcCCC--CCCEEEEEECCCCce
Confidence            666543    3467999999888766653211        1 11122 344444444444422  245688888765543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=94.95  E-value=2  Score=38.77  Aligned_cols=191  Identities=11%  Similarity=-0.004  Sum_probs=97.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.||+.+...      ..+++||+.++ ...+..    +... -.+++. -++.||+....      .+.+++||+.++
T Consensus        39 g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~----~~~~-~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g  100 (296)
T 3e5z_A           39 RSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH----PSHH-QNGHCLNKQGHLIACSHG------LRRLERQREPGG  100 (296)
T ss_dssp             GTEEEEEEGGG------TEEEEEETTSC-EEEEES----SCSS-EEEEEECTTCCEEEEETT------TTEEEEECSTTC
T ss_pred             CCEEEEEeCCC------CEEEEEECCCC-eEEEEC----CCCC-cceeeECCCCcEEEEecC------CCeEEEEcCCCC
Confidence            44588887543      24999999988 666652    1111 122332 24677765421      245999999888


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEE----ecCC--------CCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVF----GGCS--------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  208 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~----GG~~--------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  208 (469)
                      +...+...........-..++...++.+|+.    |...        .......+++|++. .+...+.  ....   ..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~---~~  174 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRV---KP  174 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCS---SE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--cCCC---CC
Confidence            8776532101011111223444456778886    3311        01113579999987 5554432  1111   11


Q ss_pred             eEEEEE-CCEEEEEecCCCCCCcceEEEEECC-CCcE-EEec--cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCC
Q 012184          209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMT-KLAW-SILT--SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY  283 (469)
Q Consensus       209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W-~~~~--~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~  283 (469)
                      ..++.. ++++++....     .+.+++||+. +... ....  ......|     .   .+..++++.|++..  +   
T Consensus       175 ~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p-----~---~i~~d~~G~l~v~~--~---  236 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHFTVEPGKT-----D---GLRVDAGGLIWASA--G---  236 (296)
T ss_dssp             EEEEECTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEECCSSSCC-----C---SEEEBTTSCEEEEE--T---
T ss_pred             ccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEeeCCCCCC-----C---eEEECCCCCEEEEc--C---
Confidence            233333 4555544332     2478899986 4554 2111  1111111     1   13345566777766  1   


Q ss_pred             CceEEEEECCCC
Q 012184          284 NNEVFVMRLKPR  295 (469)
Q Consensus       284 ~~~~~~~d~~~~  295 (469)
                       +.+++||++..
T Consensus       237 -~~v~~~~~~g~  247 (296)
T 3e5z_A          237 -DGVHVLTPDGD  247 (296)
T ss_dssp             -TEEEEECTTSC
T ss_pred             -CeEEEECCCCC
Confidence             35888988643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=94.92  E-value=2.9  Score=40.47  Aligned_cols=160  Identities=8%  Similarity=-0.017  Sum_probs=80.5

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeE
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW  142 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W  142 (469)
                      +.+++.|+.+.      .+.+||+.++........+  ........+.. ++.+++.|+.+      ..+.+||+.+++.
T Consensus       210 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~  274 (450)
T 2vdu_B          210 HQFIITSDRDE------HIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN  274 (450)
T ss_dssp             CEEEEEEETTS------CEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred             CcEEEEEcCCC------cEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence            77888877542      3888888777643332111  11111222222 66677777643      3588999988775


Q ss_pred             EEeeeCCC----C-----------------CCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEEC--CC-CceEeeee
Q 012184          143 DAVEVTQT----P-----------------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL--QT-NEWSQPEI  198 (469)
Q Consensus       143 ~~~~~~g~----~-----------------p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~--~~-~~W~~~~~  198 (469)
                      ...-..+.    .                 +....-..+....++.++++++..    .+.+.+|++  .+ ..+..+..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~----d~~i~iw~~~~~~~~~l~~~~~  350 (450)
T 2vdu_B          275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA----TKCIIILEMSEKQKGDLALKQI  350 (450)
T ss_dssp             EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT----CSEEEEEEECSSSTTCEEEEEE
T ss_pred             eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC----CCeEEEEEeccCCCCceeeccE
Confidence            43322110    0                 011111222223344344444322    146888888  33 34444432


Q ss_pred             cCCCCCCCcceEEEEECCEEEEEecCCCC----CCcceEEEEECCCCcEE
Q 012184          199 KGDLVTGRAGHAGITIDENWYIVGGGDNN----NGCQETIVLNMTKLAWS  244 (469)
Q Consensus       199 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~----~~~~d~~~~d~~~~~W~  244 (469)
                      .   +....-.+++...+.+++..+....    ...-.+|.++..++.|.
T Consensus       351 ~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          351 I---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             E---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             e---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence            1   1112233455556777777654321    22346788888888886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=94.92  E-value=2.9  Score=40.54  Aligned_cols=66  Identities=14%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184          114 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  193 (469)
Q Consensus       114 ~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  193 (469)
                      +.+++.|+.+      ..|.+||+.+.........+.   ...-.+++.. ++.+++.|+.+     +.|.+||+.+.+.
T Consensus       210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h---~~~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~  274 (450)
T 2vdu_B          210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFGH---KHFVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKN  274 (450)
T ss_dssp             CEEEEEEETT------SCEEEEEESCTTCEEEECCCC---SSCEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCE
T ss_pred             CcEEEEEcCC------CcEEEEECCCCceeeeeecCC---CCceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcE
Confidence            6677777654      348889988765433211111   1111222223 55566667644     4688999887764


Q ss_pred             E
Q 012184          194 S  194 (469)
Q Consensus       194 ~  194 (469)
                      .
T Consensus       275 ~  275 (450)
T 2vdu_B          275 L  275 (450)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.92  E-value=2.1  Score=38.81  Aligned_cols=230  Identities=10%  Similarity=0.015  Sum_probs=111.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-C-CEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+.+||+.++++..+......             .....-++++.. + +.||+....       +.+++||+. ++...
T Consensus        47 ~i~~~d~~~g~~~~~~~~~~~-------------~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~-g~~~~  105 (314)
T 1pjx_A           47 EILRIDLKTGKKTVICKPEVN-------------GYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD-GTFEE  105 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEET-------------TEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT-SCEEE
T ss_pred             EEEEEeCCCCcEEEEEecccC-------------CCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC-CCEEE
Confidence            688999988888765431000             001112333333 4 788887531       248999998 77766


Q ss_pred             e-ecCCCCCCCCcceEEEEE-CCEEEEEeccC---------CCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEE
Q 012184           94 M-ETSGKVPVARGGHSVTLV-GSRLIIFGGED---------RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL  162 (469)
Q Consensus        94 ~-~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~---------~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~  162 (469)
                      + ...........-+.++.- ++.+|+.....         ........+++||+. .+...+...  ...+   ..++.
T Consensus       106 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~---~~i~~  179 (314)
T 1pjx_A          106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFP---NGIAV  179 (314)
T ss_dssp             CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSE---EEEEE
T ss_pred             EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCc---ceEEE
Confidence            5 321111111111223322 46788765322         111123579999987 665544321  1111   23333


Q ss_pred             E----cCc-EEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCC--CcceEEEEE-CCEEEEEecCCCCCCcceE
Q 012184          163 H----ANR-YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTG--RAGHAGITI-DENWYIVGGGDNNNGCQET  233 (469)
Q Consensus       163 ~----~~~-~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~--r~~~~~~~~-~~~l~v~GG~~~~~~~~d~  233 (469)
                      .    .++ .+|+....     .+.+++||+. ++...........+..  .....++.. ++.+|+....     .+.+
T Consensus       180 ~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i  249 (314)
T 1pjx_A          180 RHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHI  249 (314)
T ss_dssp             EECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEE
T ss_pred             ecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEE
Confidence            3    455 56775432     2568899876 4444322111111111  112233333 4677776421     2368


Q ss_pred             EEEECCCCcE-EEeccCCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECCCC
Q 012184          234 IVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       234 ~~~d~~~~~W-~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .+||+.+... ..+. .+.        .....+..+++ ..||+....+    +.+++|++...
T Consensus       250 ~~~d~~~g~~~~~~~-~~~--------~~~~~i~~~~dg~~l~v~~~~~----~~l~~~~~~~~  300 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIR-CPF--------EKPSNLHFKPQTKTIFVTEHEN----NAVWKFEWQRN  300 (314)
T ss_dssp             EEECTTCBSCSEEEE-CSS--------SCEEEEEECTTSSEEEEEETTT----TEEEEEECSSC
T ss_pred             EEEcCCCCcEeEEEe-CCC--------CCceeEEECCCCCEEEEEeCCC----CeEEEEeCCCC
Confidence            8999874432 2221 111        11222333443 4577765432    36999998654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.88  E-value=4.3  Score=42.14  Aligned_cols=114  Identities=17%  Similarity=0.100  Sum_probs=62.0

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.+|..+++  |+.-......      ..  ..........+.++.++.||+...       ...++.+|..|++  |
T Consensus        81 ~v~AlD~~tG~~~W~~~~~~~~~------~~--~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           81 VVYALDARDGRLIWKYDPQSDRH------RA--GEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             CEEEEETTTCCEEEEECCCCCGG------GG--GGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCceeEEEcCCCCcc------cc--ccccccCCCCccEEECCEEEEEcc-------CCEEEEEECCCCCEee
Confidence            68999998764  8764432110      00  000000112234567888888642       1349999999886  8


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  145 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~  145 (469)
                      +.-.............+.++.++.+|+- ...........++.||+.|++  |+.-
T Consensus       146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg-~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          146 SVDTRADHKRSYTITGAPRVVNGKVVIG-NGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             EEECCSCTTSCCBCCSCCEEETTEEEEC-CBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             eecCcCCCCCCccccCCcEEECCEEEEE-eCCCccCCCCEEEEEECCCCcEEEEec
Confidence            7654211111112222335568887763 222111134579999999876  8764

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.85  E-value=0.38  Score=39.39  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=11.4

Q ss_pred             hhhcchhhHHHHHHHHHHHHHHhh
Q 012184          383 EVNSTHSELSKELSSVQGQLVAER  406 (469)
Q Consensus       383 ~~~~~~~e~~~el~~~~~~l~~~~  406 (469)
                      .++.....+++++..++.+|.+++
T Consensus        59 ~L~~~k~~Leke~~~LQa~L~qEr   82 (168)
T 3o0z_A           59 ILENSKSQTDKDYYQLQAILEAER   82 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555555553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.76  E-value=2.6  Score=46.93  Aligned_cols=190  Identities=9%  Similarity=-0.020  Sum_probs=90.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++.+++.|+.+      ..+.++|+.+++....-.   .  ......++.+    ++.+++.|+.+      ..+.+||+
T Consensus       668 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~  730 (1249)
T 3sfz_A          668 DDSYIATCSAD------KKVKIWDSATGKLVHTYD---E--HSEQVNCCHFTNKSNHLLLATGSND------FFLKLWDL  730 (1249)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCEEEEEE---C--CSSCEEEEEECSSSSCCEEEEEETT------SCEEEEET
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCceEEEEc---C--CCCcEEEEEEecCCCceEEEEEeCC------CeEEEEEC
Confidence            55666666633      238999998887544321   1  1122223333    22355555533      24889999


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCC------CCC---CCcc
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD------LVT---GRAG  208 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~------~p~---~r~~  208 (469)
                      .+......-. +   ....-.+++...++..++.|+.+     ..+.++|+.+..-........      .+.   ....
T Consensus       731 ~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  801 (1249)
T 3sfz_A          731 NQKECRNTMF-G---HTNSVNHCRFSPDDELLASCSAD-----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV  801 (1249)
T ss_dssp             TSSSEEEEEC-C---CSSCEEEEEECSSTTEEEEEESS-----SEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred             CCcchhheec-C---CCCCEEEEEEecCCCEEEEEECC-----CeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence            8877543321 1   11111223333355566666654     357888887664322111000      000   0011


Q ss_pred             eEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceE
Q 012184          209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEV  287 (469)
Q Consensus       209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~  287 (469)
                      .+++.. ++..+++++      .+.+.+||+.+............       ..+..+...+++.++++|+.++    .+
T Consensus       802 ~~~~~s~dg~~l~~~~------~~~v~~~d~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~~~dg----~v  864 (1249)
T 3sfz_A          802 KCCSWSADGDKIIVAA------KNKVLLFDIHTSGLLAEIHTGHH-------STIQYCDFSPYDHLAVIALSQY----CV  864 (1249)
T ss_dssp             CCCCBCTTSSEEEEEE------TTEEEEEETTTCCEEEEEECSSS-------SCCCEEEECSSTTEEEEECSSS----CE
T ss_pred             EEEEECCCCCEEEEEc------CCcEEEEEecCCCceeEEcCCCC-------CceEEEEEcCCCCEEEEEeCCC----eE
Confidence            111111 345555554      24688999887765443211111       1112233344556667776554    25


Q ss_pred             EEEECCC
Q 012184          288 FVMRLKP  294 (469)
Q Consensus       288 ~~~d~~~  294 (469)
                      .+||+.+
T Consensus       865 ~vwd~~~  871 (1249)
T 3sfz_A          865 ELWNIDS  871 (1249)
T ss_dssp             EEEETTT
T ss_pred             EEEEcCC
Confidence            5666543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=94.75  E-value=3.5  Score=42.80  Aligned_cols=193  Identities=10%  Similarity=-0.017  Sum_probs=87.0

Q ss_pred             ceEEEEECCC-CeEEEeecCCCCCCCCcceEE-EEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           79 MIVRFIDLET-NLCGVMETSGKVPVARGGHSV-TLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        79 ~~~~~~d~~t-~~W~~~~~~g~~p~~r~~~~~-~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      ..++.+|+.+ +.-..+...  .+....-..+ ..-+..|++...... . ....++++|+.+++...+........-..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~-~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRD-Q-KKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETT-S-SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eEEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEeccc-C-CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence            3688899988 775554321  0111111111 122334554432121 1 25679999999988776643211000001


Q ss_pred             CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE-EE-CC-EEEEEecCCCCCCcceE
Q 012184          157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TI-DE-NWYIVGGGDNNNGCQET  233 (469)
Q Consensus       157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~-~~-~l~v~GG~~~~~~~~d~  233 (469)
                      ...+....|+++++.++.++   ...+|.+|+... ...+.. +    .......+ .. ++ .|++.+. ........+
T Consensus       339 ~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~-~----~~~v~~~~~~s~dg~~l~~~~~-~~~~~~~~l  408 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH-G----NWSVDELLAVDEKAGLAYFRAG-IESARESQI  408 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC-S----SSCEEEEEEEETTTTEEEEEEC-SSCTTCBEE
T ss_pred             CCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee-c----ceEEEeEeEEeCCCCEEEEEEe-CCCCceEEE
Confidence            11223333555666554432   357888887665 444421 1    11111222 22 44 4554443 222224457


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      |..++....-..+..    .    .+.  ..+...+++..+++...+.....++++++....
T Consensus       409 ~~~~~~g~~~~~l~~----~----~~~--~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          409 YAVPLQGGQPQRLSK----A----PGM--HSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EEEETTCCCCEECCC----S----CSE--EEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EEEEcCCCCeeeccc----C----CCc--eEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            777765443333322    0    111  123333433344443333333456777776543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=94.71  E-value=2.5  Score=38.70  Aligned_cols=197  Identities=11%  Similarity=0.039  Sum_probs=89.8

Q ss_pred             CCE-EEEEccccCCCCCcceEEEEEC-CCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTK-LLILGGHYKKSSDSMIVRFIDL-ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~-iy~~GG~~~~~~~~~~~~~~d~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++. +++.|+.++      .+..||+ .++....+..   .+....-.+++...+.+++.|+.+      ..+.+||+.+
T Consensus        67 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~  131 (342)
T 1yfq_A           67 NTDLQIYVGTVQG------EILKVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASWD------GLIEVIDPRN  131 (342)
T ss_dssp             SSSEEEEEEETTS------CEEEECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred             CCCcEEEEEcCCC------eEEEEEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence            566 667766432      3899999 8887655541   001111122222224555566543      3477887654


Q ss_pred             Ce-------EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC-Cc--eEeeeecCCCCCCCcce
Q 012184          140 MT-------WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NE--WSQPEIKGDLVTGRAGH  209 (469)
Q Consensus       140 ~~-------W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~--W~~~~~~~~~p~~r~~~  209 (469)
                      ..       ...+.   ....+.. ...+.+..+. ++.|+.+     ..+.+||+.+ ..  .....    .+....-.
T Consensus       132 ~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~----~~~~~~i~  197 (342)
T 1yfq_A          132 YGDGVIAVKNLNSN---NTKVKNK-IFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEE----SGLKYQIR  197 (342)
T ss_dssp             HTTBCEEEEESCSS---SSSSCCC-EEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEE----CSCSSCEE
T ss_pred             cccccccccCCeee---EEeeCCc-eEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeee----cCCCCcee
Confidence            00       11111   1111111 2223343444 5555433     4689999887 43  22221    11112222


Q ss_pred             EEEEE--CCEEEEEecCCCCCCcceEEEEECCCC-------cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184          210 AGITI--DENWYIVGGGDNNNGCQETIVLNMTKL-------AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  280 (469)
Q Consensus       210 ~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~-------~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~  280 (469)
                      +++..  ++.++++|+.++     .+.++|....       .-..+..........-....+..+...+++.+++.|+.+
T Consensus       198 ~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  272 (342)
T 1yfq_A          198 DVALLPKEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             EEEECSGGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred             EEEECCCCCCEEEEEecCC-----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence            33333  356777776432     3444444322       111111111000000001234444555556677778765


Q ss_pred             CCCCceEEEEECCCCC
Q 012184          281 GKYNNEVFVMRLKPRD  296 (469)
Q Consensus       281 ~~~~~~~~~~d~~~~~  296 (469)
                      +    .+.+||+.+..
T Consensus       273 g----~i~vwd~~~~~  284 (342)
T 1yfq_A          273 G----IISCWNLQTRK  284 (342)
T ss_dssp             S----CEEEEETTTTE
T ss_pred             c----eEEEEcCccHh
Confidence            5    48888887553

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=94.69  E-value=3  Score=39.55  Aligned_cols=198  Identities=16%  Similarity=0.114  Sum_probs=92.1

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++..++.|+.+.      .+..||+.++.-...-   ....  ....++.+  ++..++.|+.+      ..+.+||+.+
T Consensus       134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~h~--~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAEDR------LIRIWDIENRKIVMIL---QGHE--QDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEEE---ccCC--CCEEEEEEcCCCCEEEEecCC------CcEEEEECCC
Confidence            566677776432      3889999888654332   1111  11122223  34555566543      3488899998


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCC-CCCC-C-cceEEEEE-
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD-LVTG-R-AGHAGITI-  214 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~-~p~~-r-~~~~~~~~-  214 (469)
                      .........     .....+++... ++.+++.|+.+     ..+.+||+.+..-........ .... . .-.+++.. 
T Consensus       197 ~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  266 (393)
T 1erj_A          197 GQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  266 (393)
T ss_dssp             TEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             CeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC
Confidence            876443211     11112222222 56677777755     358889988765432110000 0011 1 11122222 


Q ss_pred             CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC--CCCCCCCCCcc--eEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184          215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK--GRNPLASEGLS--VCSAIIEGEHHLVAFGGYNGKYNNEVFVM  290 (469)
Q Consensus       215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~--~~~p~~r~~~s--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  290 (469)
                      ++.+++.|+.+     ..+.+||+.+..-......+  ........+|.  +..+...+++.+++.|+.++    .+.+|
T Consensus       267 ~g~~l~s~s~d-----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~----~v~iw  337 (393)
T 1erj_A          267 DGQSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR----GVLFW  337 (393)
T ss_dssp             TSSEEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS----EEEEE
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC----eEEEE
Confidence            45677777643     24677777543211100000  00000001121  22333444566777787665    47888


Q ss_pred             ECCCC
Q 012184          291 RLKPR  295 (469)
Q Consensus       291 d~~~~  295 (469)
                      |+.+.
T Consensus       338 d~~~~  342 (393)
T 1erj_A          338 DKKSG  342 (393)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            87654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.66  E-value=2.4  Score=38.28  Aligned_cols=92  Identities=10%  Similarity=0.035  Sum_probs=46.6

Q ss_pred             CcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCC
Q 012184          181 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE  258 (469)
Q Consensus       181 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~  258 (469)
                      ..+.++|..+..-.....   ...+  ...++..  ++.+++.+|...    ..+.+||+.+..-  +..+.+..     
T Consensus       221 ~~i~lwd~~~~~~~~~~~---~~~~--v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~~--~~~l~gH~-----  284 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVD---AHSQ--VCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAK--VAELKGHT-----  284 (318)
T ss_dssp             CEEEEEETTTCCEEEEEE---CSSC--EEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCE--EEEECCCS-----
T ss_pred             CEEEEEeccccccccccc---ceee--eeeeeecccccceEEEEEcCC----CEEEEEECCCCcE--EEEEcCCC-----
Confidence            357788877665443321   1111  1122222  345555555322    3588899877653  22332221     


Q ss_pred             CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          259 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       259 ~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                       ..+..+...+++.+++.||.++.    +.++|+.
T Consensus       285 -~~V~~l~~spdg~~l~S~s~D~~----v~iWd~~  314 (318)
T 4ggc_A          285 -SRVLSLTMSPDGATVASAAADET----LRLWRCF  314 (318)
T ss_dssp             -SCEEEEEECTTSSCEEEEETTTE----EEEECCS
T ss_pred             -CCEEEEEEcCCCCEEEEEecCCe----EEEEECC
Confidence             12333444556677888887663    6666653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=94.59  E-value=2.9  Score=43.75  Aligned_cols=151  Identities=11%  Similarity=0.046  Sum_probs=78.7

Q ss_pred             cceEEEEECCCCeE--EEeecCCCCCCCCcceEEEE-ECC-EEEEEeccCCCCCccCcEEEEECCCC--e-EEEeeeCCC
Q 012184           78 SMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--T-WDAVEVTQT  150 (469)
Q Consensus        78 ~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~-~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~--~-W~~~~~~g~  150 (469)
                      ...++.+++.+..-  ..+. . ....+....+... -++ .|++.......  ..++++++|+.+.  . |..+...  
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~-~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~l~~~--  315 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVF-A-TPELPKRGHGASVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIGPVTALIPD--  315 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEE-C-CTTCTTCEEEEEECTTSCEEEEEEECTTC--SCCEEEEEEEETTEECCCEEEECS--
T ss_pred             CCEEEEEECCCCchhCEEEe-c-cCCCCeEEEEEEECCCCCEEEEEEEccCC--CcceEEEEECCCCCCcccEEecCC--
Confidence            34588888877652  1222 1 1111111222222 244 45544432211  3678999999887  6 7777521  


Q ss_pred             CCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC--CceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184          151 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN  228 (469)
Q Consensus       151 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  228 (469)
                       ..  .....+..+++.||+....+  .....++++|+.+  ..|..+..  ....  ....+...++.+++....++  
T Consensus       316 -~~--~~~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~--~~~~--~l~~~~~~~~~lv~~~~~dg--  384 (741)
T 1yr2_A          316 -LK--AQWDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVP--ESKD--NLESVGIAGNRLFASYIHDA--  384 (741)
T ss_dssp             -SS--SCEEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEEC--CCSS--EEEEEEEEBTEEEEEEEETT--
T ss_pred             -CC--ceEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEec--CCCC--eEEEEEEECCEEEEEEEECC--
Confidence             11  11222233466677765432  2235799999987  57887652  1111  11223344777777654322  


Q ss_pred             CcceEEEEECCCCcEEEe
Q 012184          229 GCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       229 ~~~d~~~~d~~~~~W~~~  246 (469)
                       ...+|.+|+....-..+
T Consensus       385 -~~~l~~~~~~g~~~~~l  401 (741)
T 1yr2_A          385 -KSQVLAFDLDGKPAGAV  401 (741)
T ss_dssp             -EEEEEEEETTSCEEEEC
T ss_pred             -EEEEEEEeCCCCceeec
Confidence             45789999865544443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=94.53  E-value=3.3  Score=39.28  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      ++++++.|+.+.      .+.+||+.+.+-...- .+   ....-.++....++..++.|+.+     ..+.++|+.+..
T Consensus       134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~  198 (393)
T 1erj_A          134 DGKFLATGAEDR------LIRIWDIENRKIVMIL-QG---HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQ  198 (393)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEEE-cc---CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCe
Confidence            456677776543      4889999888654332 11   11112233333355566666654     458889998876


Q ss_pred             eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCC
Q 012184          193 WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE  270 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~  270 (469)
                      ......     ......+++..  ++.+++.|+.++     .+.+||+.+..-...-...... .......+..+...++
T Consensus       199 ~~~~~~-----~~~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          199 CSLTLS-----IEDGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENES-GTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             EEEEEE-----CSSCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTT
T ss_pred             eEEEEE-----cCCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccC-CCCCCCCEEEEEECCC
Confidence            543221     11111222322  456777777543     4778898776543211111000 0011223444455556


Q ss_pred             cEEEEEeccCCCCCceEEEEECCC
Q 012184          271 HHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       271 ~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      +.+++.|+.++    .+.+||+..
T Consensus       268 g~~l~s~s~d~----~v~~wd~~~  287 (393)
T 1erj_A          268 GQSVVSGSLDR----SVKLWNLQN  287 (393)
T ss_dssp             SSEEEEEETTS----EEEEEEC--
T ss_pred             CCEEEEEeCCC----EEEEEECCC
Confidence            66777887665    477777654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.50  E-value=2.7  Score=38.19  Aligned_cols=30  Identities=20%  Similarity=0.161  Sum_probs=18.7

Q ss_pred             eEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          262 VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       262 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +..+...+++.+++.||.++.    +.+||+...
T Consensus       309 v~~~~~s~~~~~l~s~~~dg~----v~iw~~~~~  338 (351)
T 3f3f_A          309 VWSVSWNLTGTILSSAGDDGK----VRLWKATYS  338 (351)
T ss_dssp             EEEEEECSSSCCEEEEETTSC----EEEEEECTT
T ss_pred             EEEEEEcCCCCEEEEecCCCc----EEEEecCcC
Confidence            334445556677788886653    777777653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.50  E-value=3.2  Score=38.97  Aligned_cols=200  Identities=13%  Similarity=0.093  Sum_probs=96.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeec------CC-CC-CCCCcceEEEEE---CCEEEEEeccCCCCCccC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET------SG-KV-PVARGGHSVTLV---GSRLIIFGGEDRSRKLLN  130 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~------~g-~~-p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~  130 (469)
                      ++.+++.|+.++      .+..||+.+........      .+ .. ......-.++.+   ++.+++.|+.+      .
T Consensus        55 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~  122 (408)
T 4a11_B           55 EGRYMLSGGSDG------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD------K  122 (408)
T ss_dssp             TCCEEEEEETTS------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT------S
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC------C
Confidence            567777776542      28888887664221110      00 00 011222223333   34466666543      3


Q ss_pred             cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc---CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc
Q 012184          131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA  207 (469)
Q Consensus       131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~  207 (469)
                      .+.+||+.+........   .+.+.  ..+....   ++.+++.|+.+     ..+.+||+.+..-...-  ..  ....
T Consensus       123 ~i~iwd~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~~--~~--~~~~  188 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFN---FEETV--YSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHIL--QG--HRQE  188 (408)
T ss_dssp             EEEEEETTTTEEEEEEE---CSSCE--EEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEEE--CC--CCSC
T ss_pred             eEEEeeCCCCccceecc---CCCce--eeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeeee--cC--CCCc
Confidence            58899999887655432   11111  1222221   33466666644     46889998766533211  01  1111


Q ss_pred             ceEEEEE-C-CEEEEEecCCCCCCcceEEEEECCCCc--EEEeccCCCC------CCCCCCCcceEEEEEcCCcEEEEEe
Q 012184          208 GHAGITI-D-ENWYIVGGGDNNNGCQETIVLNMTKLA--WSILTSVKGR------NPLASEGLSVCSAIIEGEHHLVAFG  277 (469)
Q Consensus       208 ~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~d~~~~~--W~~~~~~~~~------~p~~r~~~s~~~~~~~~~~~l~v~G  277 (469)
                      -.+++.. + ..+++.|+.++     .+.+||+.+..  ...+......      .........+..+...+++..++.|
T Consensus       189 v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          189 ILAVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             EEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            1122322 2 33677777433     47788886542  2222110000      0001112234444555556667777


Q ss_pred             ccCCCCCceEEEEECCCCC
Q 012184          278 GYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       278 G~~~~~~~~~~~~d~~~~~  296 (469)
                      +.++    .+.+||+.+..
T Consensus       264 ~~dg----~i~vwd~~~~~  278 (408)
T 4a11_B          264 GTDN----RMRLWNSSNGE  278 (408)
T ss_dssp             ETTS----CEEEEETTTCC
T ss_pred             cCCC----eEEEEECCCCc
Confidence            7655    48888887654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.45  E-value=4.7  Score=40.75  Aligned_cols=200  Identities=12%  Similarity=0.056  Sum_probs=103.3

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC-CCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT-QTPPAPR  155 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~-g~~p~~r  155 (469)
                      ..++..|..+.....+.   ..+.++.-|....- ++ ++|+...      ..|.|.++|+.+++-...-.. |..|.|-
T Consensus       320 g~v~~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg  390 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPG  390 (567)
T ss_dssp             TEEEEEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred             CeEEEEecCCCccceee---eeeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence            45888888877655544   23344554544433 23 4444322      267799999999986555555 6666554


Q ss_pred             CCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCc-----eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q 012184          156 YDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE-----WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNN  227 (469)
Q Consensus       156 ~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~-----W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~  227 (469)
                      .+... ...+ +.+|+.+-.+    .+.|.++|..+..     |..+....- +.+...+ +...  +.++||---.+..
T Consensus       391 ~g~~~-~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~-~g~g~~~-i~~~p~~~~l~v~~~~~~~  463 (567)
T 1qks_A          391 RGANF-VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPA-LGGGSLF-IKTHPNSQYLYVDATLNPE  463 (567)
T ss_dssp             TCEEE-EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCC-EECCTTCSEEEEECTTCSS
T ss_pred             cceee-ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEec-CCCCCEE-EEeCCCCCeEEEecCCCCC
Confidence            44332 3333 5677655322    1468888877633     877654211 1111111 1122  3467775322111


Q ss_pred             -CCcceEEEEECCCC-------cEEEeccC--CCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          228 -NGCQETIVLNMTKL-------AWSILTSV--KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       228 -~~~~d~~~~d~~~~-------~W~~~~~~--~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                       ...+.+.+||+.+.       .+..++.-  ... +.  .+-...-+.+++ +.++++.-+......+.+.++|..+..
T Consensus       464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI-TE--GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC-CS--SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             cccCceEEEEECCcccccccCCCcEEecccccccc-CC--CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence             11457899998765       23444210  000 00  012222333444 567776633222346789999987764


Q ss_pred             C
Q 012184          297 I  297 (469)
Q Consensus       297 w  297 (469)
                      -
T Consensus       541 ~  541 (567)
T 1qks_A          541 L  541 (567)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.39  E-value=0.16  Score=40.70  Aligned_cols=49  Identities=16%  Similarity=0.242  Sum_probs=26.7

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      .+++.+.+.++..++++.+++..++.++...+.+...++++++++++++
T Consensus        71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~  119 (138)
T 3hnw_A           71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI  119 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555566666666666665555555555554444443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=94.39  E-value=0.78  Score=34.09  Aligned_cols=42  Identities=19%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhH
Q 012184          367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR  408 (469)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~  408 (469)
                      +.....+...+.+++.+++.....+..++..++.+...+...
T Consensus        13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e   54 (96)
T 3q8t_A           13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE   54 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence            333334444555555555555555555555555544444333

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=94.28  E-value=3.7  Score=38.77  Aligned_cols=124  Identities=12%  Similarity=0.130  Sum_probs=71.2

Q ss_pred             CCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce-EEEE----ECC-CCeEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 012184           46 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI-VRFI----DLE-TNLCGVMETSGKVPVARGGHSVTLVGSRLIIF  119 (469)
Q Consensus        46 ~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~-~~~~----d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~  119 (469)
                      |+..|..-.-|+.+.+++.-|.+|=+.++-....- +..|    +.. ...=+.++.  .....-+..++-.+++.||+.
T Consensus       277 L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyYdgvLyLt  354 (670)
T 3ju4_A          277 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEPCIKYYDGVLYLI  354 (670)
T ss_dssp             CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEEEEEEETTEEEEE
T ss_pred             cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEE
Confidence            34447777889999999999999866655432211 2222    111 112223331  122233344555579999998


Q ss_pred             eccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184          120 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus       120 GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      --.......-+.+++-+.....|..+.....  .-......+.+ ++.|||||--
T Consensus       355 TRgt~~~~~GS~L~rs~d~Gq~w~slrfp~n--vHhtnlPFakv-gD~l~mFgsE  406 (670)
T 3ju4_A          355 TRGTRGDRLGSSLHRSRDIGQTWESLRFPHN--VHHTTLPFAKV-GDDLIMFGSE  406 (670)
T ss_dssp             EEESCTTSCCCEEEEESSTTSSCEEEECTTC--CCSSCCCEEEE-TTEEEEEEEC
T ss_pred             ecCcCCCCCcceeeeecccCCchhheecccc--ccccCCCccee-CCEEEEEecc
Confidence            5433333356678888888899999864211  11222234555 5569999863

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.24  E-value=1.8  Score=39.23  Aligned_cols=154  Identities=8%  Similarity=0.009  Sum_probs=74.5

Q ss_pred             CCEEEEEcccc---------CCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----C-C-EEEEEeccCCCC
Q 012184           62 GTKLLILGGHY---------KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----G-S-RLIIFGGEDRSR  126 (469)
Q Consensus        62 ~~~iy~~GG~~---------~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~-~-~lyi~GG~~~~~  126 (469)
                      ++.||+.....         ........+++||+. ++...+...  ...   -..++..    . + .||+....    
T Consensus       127 ~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~---~~~i~~~~~~d~dg~~l~v~~~~----  196 (314)
T 1pjx_A          127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQF---PNGIAVRHMNDGRPYQLIVAETP----  196 (314)
T ss_dssp             TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESS---EEEEEEEECTTSCEEEEEEEETT----
T ss_pred             CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCC---cceEEEecccCCCCCEEEEEECC----
Confidence            66788765322         111123569999987 666554321  111   1233333    2 3 46665421    


Q ss_pred             CccCcEEEEECC-CCeEEEeeeCCCCCCC--CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC
Q 012184          127 KLLNDVHFLDLE-TMTWDAVEVTQTPPAP--RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV  203 (469)
Q Consensus       127 ~~~~~v~~~d~~-t~~W~~~~~~g~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p  203 (469)
                        .+.+++||+. ++...........+..  ..-..++...++.+|+....     .+.+.+||+.+.+.....   ..+
T Consensus       197 --~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~---~~~  266 (314)
T 1pjx_A          197 --TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRI---RCP  266 (314)
T ss_dssp             --TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEE---ECS
T ss_pred             --CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEE---eCC
Confidence              3568899876 4544322111111111  11123444446778876432     146899998855432211   112


Q ss_pred             CCCcceEEEEE-CCE-EEEEecCCCCCCcceEEEEECCCC
Q 012184          204 TGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKL  241 (469)
Q Consensus       204 ~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~d~~~~d~~~~  241 (469)
                      . ....+++.. ++. ||+....     .+.+++|++...
T Consensus       267 ~-~~~~~i~~~~dg~~l~v~~~~-----~~~l~~~~~~~~  300 (314)
T 1pjx_A          267 F-EKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQRN  300 (314)
T ss_dssp             S-SCEEEEEECTTSSEEEEEETT-----TTEEEEEECSSC
T ss_pred             C-CCceeEEECCCCCEEEEEeCC-----CCeEEEEeCCCC
Confidence            1 222233332 344 6665442     247889988653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.20  E-value=1.1  Score=40.87  Aligned_cols=107  Identities=12%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++..++.|+.+.      .+..||+.+.....+.+   +......-.++.+.    +.+++.|+.+.      .+.++|+
T Consensus        20 ~g~~las~s~D~------~v~iw~~~~~~~~~~~~---l~gH~~~V~~v~~s~~~~g~~l~s~s~D~------~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETTS------CEEEEEBCSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTT------EEEEEEB
T ss_pred             CCCEEEEEeCCC------EEEEEecCCCCcEEEEE---EccccCCeEEEEecCCCcCCEEEEEcCCC------EEEEEEc
Confidence            566677776543      27778876543222211   01111111223331    45666776543      4788898


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEc-C--cEEEEEecCCCCcccCcEEEEECCCC
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHA-N--RYLIVFGGCSHSIFFNDLHVLDLQTN  191 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~-~--~~l~v~GG~~~~~~~~~i~~~d~~~~  191 (469)
                      .+..|..+.....   ....-..+.+. +  +.+++.|+.+     ..+.++|+.+.
T Consensus        85 ~~~~~~~~~~~~~---h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~  133 (297)
T 2pm7_B           85 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKEN  133 (297)
T ss_dssp             SSSCBCCCEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSS
T ss_pred             CCCceEEEEEeec---CCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCC
Confidence            8877654332111   11112223332 2  4466666654     35777887654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.14  E-value=0.78  Score=42.25  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=56.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++.+++.|+.+.      .+.+||+.++....+..   +......-.++.+    ++.+++.|+.+.      .+.++|+
T Consensus        24 ~g~~lasgs~D~------~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSDR------SVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETTT------EEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECC
T ss_pred             CCCEEEEEeCCC------eEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEEC
Confidence            456667766432      37788887765433321   1111111222333    145666676543      3888998


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcC--cEEEEEecCCCCcccCcEEEEECCCC-ceEe
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQ  195 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~  195 (469)
                      .+..|...........  .-.+++...+  +.+++.|+.+.     .+.++|+.+. .|..
T Consensus        89 ~~~~~~~~~~~~~h~~--~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDS--SVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEV  142 (316)
T ss_dssp             SSSCCCEEEEECCCSS--CCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEE
T ss_pred             CCCcceEEEEccCCCC--ceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcce
Confidence            8877654432111111  1122222222  45667776553     4677777654 4643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=94.09  E-value=3.2  Score=37.32  Aligned_cols=150  Identities=7%  Similarity=0.023  Sum_probs=74.1

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      ++.+++.|+.+.      .+.+||..  .-....   ..+....-.++....++. ++.|+.+     ..+.+||+.+.+
T Consensus       154 ~~~~l~~~~~d~------~i~i~d~~--~~~~~~---~~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~  216 (313)
T 3odt_A          154 SENKFLTASADK------TIKLWQND--KVIKTF---SGIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGD  216 (313)
T ss_dssp             TTTEEEEEETTS------CEEEEETT--EEEEEE---CSSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCC
T ss_pred             CCCEEEEEECCC------CEEEEecC--ceEEEE---eccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchh
Confidence            455666666432      47888833  222211   111222223334444666 6666544     468999987765


Q ss_pred             eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcE
Q 012184          193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH  272 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~  272 (469)
                      -...- . .  ....-.+++...+..++.|+.+     ..+.+||+.+......-...  .      .....+...+++.
T Consensus       217 ~~~~~-~-~--~~~~i~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~--~------~~i~~~~~~~~~~  279 (313)
T 3odt_A          217 VLRTY-E-G--HESFVYCIKLLPNGDIVSCGED-----RTVRIWSKENGSLKQVITLP--A------ISIWSVDCMSNGD  279 (313)
T ss_dssp             EEEEE-E-C--CSSCEEEEEECTTSCEEEEETT-----SEEEEECTTTCCEEEEEECS--S------SCEEEEEECTTSC
T ss_pred             hhhhh-h-c--CCceEEEEEEecCCCEEEEecC-----CEEEEEECCCCceeEEEecc--C------ceEEEEEEccCCC
Confidence            33211 0 1  1111223333333245566532     35889998877644322111  1      1233344444445


Q ss_pred             EEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184          273 LVAFGGYNGKYNNEVFVMRLKPRDIPRPK  301 (469)
Q Consensus       273 l~v~GG~~~~~~~~~~~~d~~~~~w~~~~  301 (469)
                      + +.|+.++    .+.+||+.+..+....
T Consensus       280 ~-~~~~~dg----~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          280 I-IVGSSDN----LVRIFSQEKSRWASED  303 (313)
T ss_dssp             E-EEEETTS----CEEEEESCGGGCCC--
T ss_pred             E-EEEeCCC----cEEEEeCCCCceeehh
Confidence            4 4566554    4889999877765443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.00  E-value=3.7  Score=37.79  Aligned_cols=143  Identities=13%  Similarity=0.052  Sum_probs=73.4

Q ss_pred             CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      +.+++.|+.++      .+..||..+........   .......-.++.+  ++.+++.|+.+      ..+.+||+.+.
T Consensus        54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~  118 (368)
T 3mmy_A           54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKA---QQMHTGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSN  118 (368)
T ss_dssp             SEEEEEEETTS------EEEEEEECTTSCEEEEE---EEECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred             ceEEEEECCCC------cEEEEEcCCCCceeEEE---eccccCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCC
Confidence            47888877542      37888887633222110   0011112222333  45566666543      35889999998


Q ss_pred             eEEEeeeCCCCCCCCCCceEEE--EcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAAL--HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  218 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~--~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  218 (469)
                      .......   ...+  -.++..  ..++.+++.|+.+     ..+.+||+.+.+-....     ..+....++....+.+
T Consensus       119 ~~~~~~~---~~~~--v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~  183 (368)
T 3mmy_A          119 QAIQIAQ---HDAP--VKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPMMVL-----QLPERCYCADVIYPMA  183 (368)
T ss_dssp             EEEEEEE---CSSC--EEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCSEEE-----ECSSCEEEEEEETTEE
T ss_pred             Cceeecc---ccCc--eEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEEEEE-----ecCCCceEEEecCCee
Confidence            8665432   1111  122222  3466677777754     45889998776532211     1111222344445555


Q ss_pred             EEEecCCCCCCcceEEEEECCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKL  241 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~  241 (469)
                      ++.++      ...+.+||+...
T Consensus       184 ~~~~~------~~~i~~~~~~~~  200 (368)
T 3mmy_A          184 VVATA------ERGLIVYQLENQ  200 (368)
T ss_dssp             EEEEG------GGCEEEEECSSS
T ss_pred             EEEeC------CCcEEEEEeccc
Confidence            54433      235777887654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.97  E-value=2.9  Score=38.03  Aligned_cols=192  Identities=13%  Similarity=0.056  Sum_probs=89.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      ++.+++.|+.++      .+..+|..++.-...-.   ............-++.+++.|+.+      ..+.+||+.++.
T Consensus        24 ~~~~l~s~~~dg------~v~lWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~   88 (304)
T 2ynn_A           24 TEPWVLTTLYSG------RVELWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGE   88 (304)
T ss_dssp             SSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCC
T ss_pred             CCCEEEEEcCCC------cEEEEECCCCceeEEee---ccCCcEEEEEEeCCCCEEEEECCC------CEEEEEECCCCc
Confidence            555666666432      38888988876433221   111111111111244566666643      348889988876


Q ss_pred             EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEE
Q 012184          142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWY  219 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~  219 (469)
                      -...-. +   ....-.++....++.+++.|+.+     ..+.++|+.+.. .......  .....-.+++..  ++.++
T Consensus        89 ~~~~~~-~---h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~--~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           89 KVVDFE-A---HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFE--GHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             EEEEEE-C---CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEEC--CCCSCEEEEEECTTCTTEE
T ss_pred             EEEEEe-C---CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhc--ccCCcEEEEEECCCCCCEE
Confidence            432211 1   11112233333455567777755     347788876542 2111100  111111222322  34577


Q ss_pred             EEecCCCCCCcceEEEEECCCCcEE-EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          220 IVGGGDNNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       220 v~GG~~~~~~~~d~~~~d~~~~~W~-~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +.|+.++     .+.+||+.+..-. .+.  ...    ........+...+++.+++.|+.++    .+.+||+.+.
T Consensus       157 ~sgs~D~-----~v~iwd~~~~~~~~~~~--~~~----~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~  218 (304)
T 2ynn_A          157 ASGCLDR-----TVKVWSLGQSTPNFTLT--TGQ----ERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTK  218 (304)
T ss_dssp             EEEETTS-----EEEEEETTCSSCSEEEE--CCC----TTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTT
T ss_pred             EEEeCCC-----eEEEEECCCCCccceec--cCC----cCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCC
Confidence            7777542     5778887543211 110  000    0111222222223456677777654    4777777654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.97  E-value=5  Score=40.22  Aligned_cols=151  Identities=11%  Similarity=-0.013  Sum_probs=75.0

Q ss_pred             EEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCC-CcceEEEEE--C-CEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           65 LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA-RGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        65 iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      +++.|+.+      ..+..||..+..-...-   ..... .....++.+  + +.+++.|+.+      ..+.+||+.+.
T Consensus       175 ~l~~~~~d------~~v~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~  239 (615)
T 1pgu_A          175 RSMTVGDD------GSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSG  239 (615)
T ss_dssp             EEEEEETT------TEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTC
T ss_pred             EEEEEeCC------CcEEEEeCCCcceeeee---cccCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCC
Confidence            66666643      23888998777644332   11111 002223333  3 5667777653      34899999887


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI  220 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  220 (469)
                      +....-..........-.++... ++..++.|+.+     ..+.+||+.+.+..........+......+++..++..++
T Consensus       240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  313 (615)
T 1pgu_A          240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  313 (615)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             CEeEEecccccccCCceEEEEEc-CCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence            75443201000111112223333 55566666644     4588999987765432211111111122222322566666


Q ss_pred             EecCCCCCCcceEEEEECCCC
Q 012184          221 VGGGDNNNGCQETIVLNMTKL  241 (469)
Q Consensus       221 ~GG~~~~~~~~d~~~~d~~~~  241 (469)
                      .|+.+     ..+.+||+.+.
T Consensus       314 ~~~~~-----g~i~~~d~~~~  329 (615)
T 1pgu_A          314 SLSLD-----GTLNFYELGHD  329 (615)
T ss_dssp             EEETT-----SCEEEEETTEE
T ss_pred             EEECC-----CCEEEEECCCC
Confidence            76643     35778887763

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=93.91  E-value=2.6  Score=36.00  Aligned_cols=155  Identities=12%  Similarity=0.076  Sum_probs=83.1

Q ss_pred             CeeeEEECCEEEEEccccCCCCCcceEEEEECCCC--eEEEeecC---CCCCCCCcceEEEEE--CCEEEEEeccCCCCC
Q 012184           55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETS---GKVPVARGGHSVTLV--GSRLIIFGGEDRSRK  127 (469)
Q Consensus        55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~---g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~  127 (469)
                      .-+++..++++|+|=|.        -+|+++....  ........   ..+|. ... ++...  ++++|+|-|      
T Consensus         9 fDAi~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~-~ID-Aa~~~~~~~~~yfFkG------   72 (195)
T 1itv_A            9 FDAIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR-KLD-SVFEEPLSKKLFFFSG------   72 (195)
T ss_dssp             CSEEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS-SCS-EEEECTTTCCEEEEET------
T ss_pred             CCEEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC-Ccc-EEEEECCCCeEEEEeC------
Confidence            34556679999999663        2888877552  23222211   01332 122 22222  578999965      


Q ss_pred             ccCcEEEEECCCCeE-EEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeecC-CC
Q 012184          128 LLNDVHFLDLETMTW-DAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKG-DL  202 (469)
Q Consensus       128 ~~~~v~~~d~~t~~W-~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~-~~  202 (469)
                        +..|+|+..+..- +.+...| +|.. ..--++....++++|+|-|       +..|+||..+.+-..  +.... ..
T Consensus        73 --~~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w  142 (195)
T 1itv_A           73 --RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMF  142 (195)
T ss_dssp             --TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHS
T ss_pred             --CEEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcC
Confidence              3478887543211 1111112 2321 1222333345789999987       578999987654221  00000 11


Q ss_pred             C-CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          203 V-TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       203 p-~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      + .|..-.++...++.+|+|-|       +..|+||..+..
T Consensus       143 ~Gvp~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~  176 (195)
T 1itv_A          143 PGVPLDTHDVFQFREKAYFCQD-------RFYWRVSSRSEL  176 (195)
T ss_dssp             TTSCSSCSEEEEETTEEEEEET-------TEEEEEECCTTC
T ss_pred             CCCCCCCCEEEEeCCeEEEEeC-------CEEEEEECCccE
Confidence            1 12223455556799999987       378999987665

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=93.89  E-value=4  Score=39.89  Aligned_cols=187  Identities=18%  Similarity=0.197  Sum_probs=97.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      ++.+|+|-|.        .+|+||..+.+.....-.| +|  . --++....+++|+|-|.        ..++||..+.+
T Consensus       158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~g-i~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~  217 (460)
T 1qhu_A          158 DEGILFFQGN--------RKWFWDLTTGTKKERSWPA-VG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE  217 (460)
T ss_dssp             SSEEEEEETT--------EEEEEETTTTEEEEECCTT-SC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred             CCeEEEEecc--------cEEEEecccceeecccCCC-CC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence            6788988763        3899999988766432222 22  2 23444457899999663        36677765443


Q ss_pred             EE------------EeeeCC------------C---CCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184          142 WD------------AVEVTQ------------T---PPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  193 (469)
Q Consensus       142 W~------------~~~~~g------------~---~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  193 (469)
                      -.            .++..|            .   .+.|....-++.. .++.+|+|-|       +..|+++.....+
T Consensus       218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------~~yWR~~~~~~~~  290 (460)
T 1qhu_A          218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------SHYWRLDTNRDGW  290 (460)
T ss_dssp             CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------TEEEECTTGGGCC
T ss_pred             ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------CEEEEEecCCCCc
Confidence            21            111000            0   0111112233333 4678999987       3466666544333


Q ss_pred             Eeeeec---CCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC------CCCCC--CCCcce
Q 012184          194 SQPEIK---GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG------RNPLA--SEGLSV  262 (469)
Q Consensus       194 ~~~~~~---~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~------~~p~~--r~~~s~  262 (469)
                      ....+.   +.+|..  --++...++.+|+|=|       +.+|+|+.... .+.++.-|-      ..|..  ...  +
T Consensus       291 ~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~--I  358 (460)
T 1qhu_A          291 HSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEA--V  358 (460)
T ss_dssp             CCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSC--C
T ss_pred             CccchhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCc--c
Confidence            221111   122332  3355556889999977       36889987542 122211000      01111  111  2


Q ss_pred             EEEEE-cCCcEEEEEeccCCCCCceEEEEECC
Q 012184          263 CSAII-EGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       263 ~~~~~-~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      -++.. ...+++|+|-|      +..|+||..
T Consensus       359 DAA~~~~~~~ktyfFkG------~~ywryd~~  384 (460)
T 1qhu_A          359 DAAFVCPGSSRLHIMAG------RRLWWLDLK  384 (460)
T ss_dssp             CEEECCTTCCEEEEEET------TEEEEEEGG
T ss_pred             cEEEEeCCCCEEEEEEC------CEEEEEECC
Confidence            22222 23678888876      358899976

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=93.87  E-value=0.83  Score=32.77  Aligned_cols=26  Identities=31%  Similarity=0.383  Sum_probs=9.9

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          398 VQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      .+.++.....+..+.+..+..+++++
T Consensus        25 ~e~~l~~~e~~~~~~E~ev~~L~kKi   50 (81)
T 1ic2_A           25 AEADKKAAEERSKQLEDELVALQKKL   50 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33333333333333444443343333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.82  E-value=5.8  Score=40.92  Aligned_cols=188  Identities=13%  Similarity=0.104  Sum_probs=92.0

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+.++|+.++.-...-. +  ...  ...++.+  ++..++.|+.+.      .+.++|+..
T Consensus       441 ~g~~l~sgs~Dg------~v~vwd~~~~~~~~~~~-~--h~~--~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~  503 (694)
T 3dm0_A          441 DGQFALSGSWDG------ELRLWDLAAGVSTRRFV-G--HTK--DVLSVAFSLDNRQIVSASRDR------TIKLWNTLG  503 (694)
T ss_dssp             TSSEEEEEETTS------EEEEEETTTTEEEEEEE-C--CSS--CEEEEEECTTSSCEEEEETTS------CEEEECTTS
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCcceeEEe-C--CCC--CEEEEEEeCCCCEEEEEeCCC------EEEEEECCC
Confidence            566777776442      38899998876433221 1  111  1122223  455666666443      377888765


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEc-Cc--EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHA-NR--YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D  215 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~-~~--~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~  215 (469)
                      ..-..+...+  ...+....++.+. ++  .+++.|+.+     ..|.++|+.+..-...- .+  ... .-.+++.. +
T Consensus       504 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~-~~--h~~-~v~~v~~spd  572 (694)
T 3dm0_A          504 ECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRSTL-AG--HTG-YVSTVAVSPD  572 (694)
T ss_dssp             CEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEEE-CC--CSS-CEEEEEECTT
T ss_pred             CcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEEE-cC--CCC-CEEEEEEeCC
Confidence            5433332111  1111112233332 22  356666654     35889998776543321 11  111 11122222 4


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +.+++.|+.++     .+.++|+.+..-.  ..+...       ..+..+...+++.+++.+..     ..+.+||+.+.
T Consensus       573 g~~l~sg~~Dg-----~i~iwd~~~~~~~--~~~~~~-------~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~~~~  633 (694)
T 3dm0_A          573 GSLCASGGKDG-----VVLLWDLAEGKKL--YSLEAN-------SVIHALCFSPNRYWLCAATE-----HGIKIWDLESK  633 (694)
T ss_dssp             SSEEEEEETTS-----BCEEEETTTTEEE--ECCBCS-------SCEEEEEECSSSSEEEEEET-----TEEEEEETTTT
T ss_pred             CCEEEEEeCCC-----eEEEEECCCCceE--EEecCC-------CcEEEEEEcCCCcEEEEEcC-----CCEEEEECCCC
Confidence            56777777533     4778888776532  222111       12333444555555555542     24888888665


Q ss_pred             C
Q 012184          296 D  296 (469)
Q Consensus       296 ~  296 (469)
                      .
T Consensus       634 ~  634 (694)
T 3dm0_A          634 S  634 (694)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=93.73  E-value=0.84  Score=44.28  Aligned_cols=21  Identities=10%  Similarity=0.276  Sum_probs=11.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      .|+..++++.++++.++..+.
T Consensus       172 ~L~~~~~~l~~ki~~l~~~~~  192 (464)
T 1m1j_B          172 VLRAVIDSLHKKIQKLENAIA  192 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444555556666666655554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.69  E-value=2  Score=41.48  Aligned_cols=101  Identities=14%  Similarity=0.140  Sum_probs=50.0

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCe----EEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEE
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMT----WDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVL  186 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~----W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~  186 (469)
                      ++.+++.|+.+      ..+.+||+.+..    -..+.      ........+.+.  +..+++.|+.+     +.|.+|
T Consensus       243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~------~~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vw  305 (430)
T 2xyi_A          243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVD------AHTAEVNCLSFNPYSEFILATGSAD-----KTVALW  305 (430)
T ss_dssp             CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEE------CCSSCEEEEEECSSCTTEEEEEETT-----SEEEEE
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCCCCcceeEee------cCCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEE
Confidence            35577666543      348899988652    11111      111112233332  23478888754     358899


Q ss_pred             ECCCCc--eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCC
Q 012184          187 DLQTNE--WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       187 d~~~~~--W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      |+.+..  -..+.   .  ....-.++...  +..+++.||.++     .+.+||+..
T Consensus       306 d~~~~~~~~~~~~---~--h~~~v~~i~~sp~~~~~l~s~~~d~-----~i~iwd~~~  353 (430)
T 2xyi_A          306 DLRNLKLKLHSFE---S--HKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSK  353 (430)
T ss_dssp             ETTCTTSCSEEEE---C--CSSCEEEEEECSSCTTEEEEEETTS-----CCEEEEGGG
T ss_pred             eCCCCCCCeEEee---c--CCCCEEEEEECCCCCCEEEEEeCCC-----cEEEEeCCC
Confidence            987632  11111   0  11111122222  235777777542     467888765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=93.68  E-value=4.9  Score=38.08  Aligned_cols=105  Identities=13%  Similarity=0.045  Sum_probs=54.5

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE-EEEEecCCCCcccCcEEEEECCCC
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTN  191 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~  191 (469)
                      ++.+++.|+.++      .+.+||+.+..-......   .....-.+++...++. +++.|+.+     ..+.+||+.+.
T Consensus       258 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~  323 (420)
T 3vl1_A          258 YGKYVIAGHVSG------VITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSP  323 (420)
T ss_dssp             TTEEEEEEETTS------CEEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCC
Confidence            456666666432      389999988764332211   1111122333333444 66666644     46899999876


Q ss_pred             ce--EeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          192 EW--SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       192 ~W--~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      .-  ..+..  .  ....-.++...++.+++.|+.+     ..+.+||+..
T Consensus       324 ~~~~~~~~~--~--~~~~v~~~~~~~~~~l~s~~~d-----~~v~iw~~~~  365 (420)
T 3vl1_A          324 ECPVGEFLI--N--EGTPINNVYFAAGALFVSSGFD-----TSIKLDIISD  365 (420)
T ss_dssp             TSCSEEEEE--S--TTSCEEEEEEETTEEEEEETTT-----EEEEEEEECC
T ss_pred             cCchhhhhc--c--CCCCceEEEeCCCCEEEEecCC-----ccEEEEeccC
Confidence            42  22221  1  1112223344477788887743     2466777654

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=93.57  E-value=3.3  Score=35.71  Aligned_cols=157  Identities=13%  Similarity=0.118  Sum_probs=81.6

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCC---CCCCCCcceEEEEE-CCEEEEEeccCCCCCccCc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~  131 (469)
                      -+++..++.+|+|=|.        .+|+++.....+.......   .+|. ....+.... ++++|+|-|.        .
T Consensus        27 DAi~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDAa~~~~~~~~iyfFkG~--------~   89 (207)
T 1pex_A           27 DAITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRGR--------K   89 (207)
T ss_dssp             SEEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEETT--------E
T ss_pred             eEEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-CccEEEEeccCCcEEEEccC--------E
Confidence            4566679999999653        2788876554433222110   1332 222222221 5899999653        3


Q ss_pred             EEEEECCCCeE---EEeeeCCCCCCC-CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeec-CCC-
Q 012184          132 VHFLDLETMTW---DAVEVTQTPPAP-RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK-GDL-  202 (469)
Q Consensus       132 v~~~d~~t~~W---~~~~~~g~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~-~~~-  202 (469)
                      +|+|+-.+..-   +.+...| +|.. ..--++... +++++|+|-|       +..|+||..+.+-..  +... ... 
T Consensus        90 ~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~  161 (207)
T 1pex_A           90 FWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP  161 (207)
T ss_dssp             EEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred             EEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCC
Confidence            66665322110   1121112 2221 112233333 3589999987       678999987654221  0000 000 


Q ss_pred             CCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          203 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       203 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      ..+..-.+|...++++|+|-|       +..|+||..+..-.
T Consensus       162 Gip~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~  196 (207)
T 1pex_A          162 GIGDKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV  196 (207)
T ss_dssp             TSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred             CCCCCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence            112222344456899999977       37899998776543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.52  E-value=4.5  Score=37.19  Aligned_cols=193  Identities=12%  Similarity=0.046  Sum_probs=90.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      ++..++.|+.+      ..+..||+.+.....+..   ..   ....++.+    ++.+++.|+.+      ..+.+||+
T Consensus        97 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~  158 (368)
T 3mmy_A           97 DGSKVFTASCD------KTAKMWDLSSNQAIQIAQ---HD---APVKTIHWIKAPNYSCVMTGSWD------KTLKFWDT  158 (368)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEE---CS---SCEEEEEEEECSSCEEEEEEETT------SEEEEECS
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCCceeecc---cc---CceEEEEEEeCCCCCEEEEccCC------CcEEEEEC
Confidence            55566666543      248899999988665541   11   11222222    45677777654      34888998


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C-
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D-  215 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-  215 (469)
                      .+.+-...-.     .+....++... ...+++.++ +     +.+.+|++....-.....  ..+........... + 
T Consensus       159 ~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~-~-----~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  224 (368)
T 3mmy_A          159 RSSNPMMVLQ-----LPERCYCADVI-YPMAVVATA-E-----RGLIVYQLENQPSEFRRI--ESPLKHQHRCVAIFKDK  224 (368)
T ss_dssp             SCSSCSEEEE-----CSSCEEEEEEE-TTEEEEEEG-G-----GCEEEEECSSSCEEEEEC--CCSCSSCEEEEEEEECT
T ss_pred             CCCcEEEEEe-----cCCCceEEEec-CCeeEEEeC-C-----CcEEEEEeccccchhhhc--cccccCCCceEEEcccC
Confidence            7765322211     11122222333 443444332 2     457888886653222111  11222222222222 1 


Q ss_pred             ---CEEEEEecCCCCCCcceEEEEECCCCcE----EEeccCC-CCCCCCCCCc--ceEEEEEcCCcEEEEEeccCCCCCc
Q 012184          216 ---ENWYIVGGGDNNNGCQETIVLNMTKLAW----SILTSVK-GRNPLASEGL--SVCSAIIEGEHHLVAFGGYNGKYNN  285 (469)
Q Consensus       216 ---~~l~v~GG~~~~~~~~d~~~~d~~~~~W----~~~~~~~-~~~p~~r~~~--s~~~~~~~~~~~l~v~GG~~~~~~~  285 (469)
                         ...++.|+.+     ..+.+||+....-    ..+.... ........+|  .+..+...+++.+++.|+.++    
T Consensus       225 ~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg----  295 (368)
T 3mmy_A          225 QNKPTGFALGSIE-----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG----  295 (368)
T ss_dssp             TSCEEEEEEEETT-----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS----
T ss_pred             CCCCCeEEEecCC-----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC----
Confidence               2336666543     3567777765421    1111000 0000000111  344455556667778887665    


Q ss_pred             eEEEEECCCC
Q 012184          286 EVFVMRLKPR  295 (469)
Q Consensus       286 ~~~~~d~~~~  295 (469)
                      .+.+||+.+.
T Consensus       296 ~i~iwd~~~~  305 (368)
T 3mmy_A          296 RFSFWDKDAR  305 (368)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEEECCCC
Confidence            3888888754

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=93.50  E-value=0.58  Score=33.06  Aligned_cols=66  Identities=15%  Similarity=0.245  Sum_probs=31.4

Q ss_pred             hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184          374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA  442 (469)
Q Consensus       374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~  442 (469)
                      .+.+..++++++..+.+++..++.++.+++.-+.+-..++.++   ++-++...-.-.|+.+++|.++.
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~El---k~l~e~Ld~KI~eL~elRqgLak   73 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEV---GRAAQLLDVSLFELSELREGLAR   73 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHH
Confidence            3445556666666666666666666666655544433333222   22222222222345555555444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.47  E-value=1.2  Score=36.26  Aligned_cols=74  Identities=24%  Similarity=0.289  Sum_probs=38.0

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHH
Q 012184          375 SRFREKIDEVNSTHSELSKELSSV-------QGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAF  443 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~-------~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~  443 (469)
                      .+.....+..+..+.+++.++..+       +..-.+..++...++.++..++.++...+    .-++.+..+++.+..+
T Consensus        31 EraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l  110 (155)
T 2efr_A           31 ERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL  110 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444443       33333335666667777777776665555    3445555555555555


Q ss_pred             HHHHH
Q 012184          444 EQEME  448 (469)
Q Consensus       444 ~~~~~  448 (469)
                      +.++.
T Consensus       111 Ed~L~  115 (155)
T 2efr_A          111 EDELY  115 (155)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=93.47  E-value=0.77  Score=45.36  Aligned_cols=28  Identities=21%  Similarity=0.308  Sum_probs=17.6

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012184          422 MLESSQTIENEVQILRQQKSAFEQEMER  449 (469)
Q Consensus       422 ~l~~~~~~e~e~~~~~q~~~~~~~~~~~  449 (469)
                      .+..++++|.|+.++.++++..+.++++
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          441 GQKKVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666777777776666666653

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=93.42  E-value=0.8  Score=31.69  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=18.0

Q ss_pred             hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhH
Q 012184          377 FREKIDEVNSTHSELSKELSSVQGQLVAERSR  408 (469)
Q Consensus       377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~  408 (469)
                      +..++++++..+.+++..++.++.+++.-+.+
T Consensus         5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~   36 (72)
T 3cve_A            5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE   36 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666555554443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.40  E-value=0.59  Score=37.13  Aligned_cols=39  Identities=23%  Similarity=0.208  Sum_probs=17.4

Q ss_pred             hhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          384 VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       384 ~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      .+.++.++.+.++.++.+++.++.....|+..+.+.+..
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~   74 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR   74 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555555544443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.37  E-value=0.87  Score=45.17  Aligned_cols=15  Identities=33%  Similarity=0.479  Sum_probs=7.6

Q ss_pred             CcEEEEECCCCceEe
Q 012184          181 NDLHVLDLQTNEWSQ  195 (469)
Q Consensus       181 ~~i~~~d~~~~~W~~  195 (469)
                      ..+..+|++.+....
T Consensus       144 ~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A          144 SRVQYLDLKLNEIDT  158 (487)
T ss_dssp             SSEEEEECTTSCCCE
T ss_pred             CCCCEEECCCCCCCC
Confidence            345555555554433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.34  E-value=0.25  Score=39.55  Aligned_cols=50  Identities=18%  Similarity=0.215  Sum_probs=21.6

Q ss_pred             hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ...+++++++.+.++..+.+++...+.++...+....++++++.++++++
T Consensus        77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~  126 (138)
T 3hnw_A           77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI  126 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.33  E-value=1.3  Score=32.54  Aligned_cols=31  Identities=32%  Similarity=0.483  Sum_probs=12.0

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhh
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDE  383 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  383 (469)
                      .+.++++.+.++..+.....+..+|...+.+
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~e   37 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAK   37 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444433333333333333333333

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=93.33  E-value=4.6  Score=36.70  Aligned_cols=165  Identities=7%  Similarity=-0.024  Sum_probs=79.5

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCC-CCCCCCcceEEEEECCEEEEE----eccCC-------CCCcc
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG-KVPVARGGHSVTLVGSRLIIF----GGEDR-------SRKLL  129 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g-~~p~~r~~~~~~~~~~~lyi~----GG~~~-------~~~~~  129 (469)
                      +++||+... .     ...+.+||+. ++...+.... ..+..+....++.-++.||+.    |-...       .....
T Consensus        96 dG~l~v~~~-~-----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A           96 QQRLVHCEH-G-----RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             TSCEEEEET-T-----TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             CCCEEEEEC-C-----CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence            567776631 1     1248899986 7776664210 111111122222235678874    32210       01124


Q ss_pred             CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184          130 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  208 (469)
Q Consensus       130 ~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  208 (469)
                      ..+++||+.++++..+.   ....|   ..++...++ .||+..........+.|++|++..............+... .
T Consensus       169 ~~v~~~d~~~g~~~~~~---~~~~p---~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~-p  241 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA---DLDHP---NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL-P  241 (305)
T ss_dssp             EEEEEECSSSCCCEEEE---EESSE---EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC-C
T ss_pred             CeEEEEcCCCCcEEEEe---cCCCC---cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC-C
Confidence            57999999888877654   11111   233333344 5777653221111257999998765432211111111111 1


Q ss_pred             eEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184          209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~  247 (469)
                      ..++.. +++||+..+       ..+++||+.......+.
T Consensus       242 dgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          242 DGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             CSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred             CeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence            123322 466776542       24899999766555543

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.27  E-value=0.64  Score=36.81  Aligned_cols=36  Identities=17%  Similarity=0.411  Sum_probs=17.0

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184          386 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  421 (469)
Q Consensus       386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~  421 (469)
                      .++.++.+.++.++.+++.++.+...|+..+.+.+.
T Consensus        36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~   71 (129)
T 3tnu_B           36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ   71 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            334444444444444454444444455555544433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=93.26  E-value=5.9  Score=37.76  Aligned_cols=72  Identities=8%  Similarity=0.027  Sum_probs=40.2

Q ss_pred             CCEEEEEec----CCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184          215 DENWYIVGG----GDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM  290 (469)
Q Consensus       215 ~~~l~v~GG----~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  290 (469)
                      ++++|+.-+    +.+...-+.++++|+.+.+-..--.+.. .     .++ +.+..++...||+.-+.    .+++.++
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~-----~~~-lavs~D~~~~ly~tn~~----~~~VsVi  359 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-E-----IDS-INVSQDEKPLLYALSTG----DKTLYIH  359 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-E-----ECE-EEECSSSSCEEEEEETT----TTEEEEE
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-C-----cce-EEECCCCCeEEEEEcCC----CCeEEEE
Confidence            578888632    1222335789999999887654222211 1     111 22223333467775432    4579999


Q ss_pred             ECCCCCC
Q 012184          291 RLKPRDI  297 (469)
Q Consensus       291 d~~~~~w  297 (469)
                      |..+..-
T Consensus       360 D~~t~k~  366 (386)
T 3sjl_D          360 DAESGEE  366 (386)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCcE
Confidence            9977653

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.23  E-value=1.7  Score=35.54  Aligned_cols=6  Identities=33%  Similarity=0.435  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 012184          436 LRQQKS  441 (469)
Q Consensus       436 ~~q~~~  441 (469)
                      +++..+
T Consensus       148 lQ~~~e  153 (168)
T 3o0z_A          148 LQQRLE  153 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=93.20  E-value=4  Score=37.25  Aligned_cols=187  Identities=11%  Similarity=-0.004  Sum_probs=88.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCe----EEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNL----CGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLD  136 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~----W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d  136 (469)
                      ++.+++.|+.+      ..+.+||+.+..    ...+..    ........+..-++. +++.|+.+      ..+.+||
T Consensus        22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd   85 (342)
T 1yfq_A           22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ------GEILKVD   85 (342)
T ss_dssp             GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT------SCEEEEC
T ss_pred             CCCEEEEEcCC------CeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC------CeEEEEE
Confidence            44555666533      237777776655    322221    111111111222556 66677643      3489999


Q ss_pred             C-CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-------eEeeeecCCCCCCCcc
Q 012184          137 L-ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-------WSQPEIKGDLVTGRAG  208 (469)
Q Consensus       137 ~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-------W~~~~~~~~~p~~r~~  208 (469)
                      + .+.....+..  . +....-.++.... +.+++.|+.+     ..+.+||+.+..       ...+.   ....+..-
T Consensus        86 ~~~~~~~~~~~~--~-~~~~~v~~l~~~~-~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v  153 (342)
T 1yfq_A           86 LIGSPSFQALTN--N-EANLGICRICKYG-DDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSN---NTKVKNKI  153 (342)
T ss_dssp             SSSSSSEEECBS--C-CCCSCEEEEEEET-TTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSS---SSSSCCCE
T ss_pred             eccCCceEeccc--c-CCCCceEEEEeCC-CCEEEEEcCC-----CeEEEEcccccccccccccCCeee---EEeeCCce
Confidence            9 8887654431  0 0111122333333 4466666654     357788765300       11111   11122222


Q ss_pred             eEEEEECCEEEEEecCCCCCCcceEEEEECCC-Cc--EEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCC
Q 012184          209 HAGITIDENWYIVGGGDNNNGCQETIVLNMTK-LA--WSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYN  284 (469)
Q Consensus       209 ~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~-~~--W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~  284 (469)
                      .+++...+. +++|+.+     ..+.+||+.+ ..  ...... .       .......+...+ ++.++++|+.++   
T Consensus       154 ~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~-------~~~~i~~i~~~~~~~~~l~~~~~dg---  216 (342)
T 1yfq_A          154 FTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-G-------LKYQIRDVALLPKEQEGYACSSIDG---  216 (342)
T ss_dssp             EEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-S-------CSSCEEEEEECSGGGCEEEEEETTS---
T ss_pred             EEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-C-------CCCceeEEEECCCCCCEEEEEecCC---
Confidence            234444455 5555532     3688999877 33  222111 1       112233444555 556777787654   


Q ss_pred             ceEEEEECCC
Q 012184          285 NEVFVMRLKP  294 (469)
Q Consensus       285 ~~~~~~d~~~  294 (469)
                       .+.+|+...
T Consensus       217 -~i~i~~~~~  225 (342)
T 1yfq_A          217 -RVAVEFFDD  225 (342)
T ss_dssp             -EEEEEECCT
T ss_pred             -cEEEEEEcC
Confidence             355555543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.19  E-value=7.3  Score=39.45  Aligned_cols=109  Identities=14%  Similarity=0.084  Sum_probs=58.2

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.||..+++  |+.-......          ..+.......+.++.++.||+...       ...++.+|..|++  |
T Consensus        79 ~v~AlD~~tG~~~W~~~~~~~~~----------~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~~TG~~~W  141 (582)
T 1flg_A           79 RLFALDAKTGKRLWTYNHRLPDD----------IRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNKNTGKVVW  141 (582)
T ss_dssp             EEEEEESSSCCEEEEEECCCCTT----------CCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEESSSCCEEE
T ss_pred             CEEEEECCCCcEEEEEcCCCCcc----------cccccccCCCccEEECCEEEEEeC-------CCEEEEEECCCCCEEe
Confidence            58999998765  8775443210          000000112344567899888532       1349999999886  8


Q ss_pred             EEeecCCCCCCCC--cceEEEEECC------EEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184           92 GVMETSGKVPVAR--GGHSVTLVGS------RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  145 (469)
Q Consensus        92 ~~~~~~g~~p~~r--~~~~~~~~~~------~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~  145 (469)
                      +.-..   .+...  ...+-++.++      .+| +|...........++.||+.|++  |+..
T Consensus       142 ~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          142 KKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EEECS---CGGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             eecCC---CCCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEEeecC
Confidence            76431   11110  1112233445      454 44322111124569999998875  8654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=93.14  E-value=5.2  Score=36.78  Aligned_cols=66  Identities=14%  Similarity=0.104  Sum_probs=36.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+..||+.++.-.....  ..........++.+  ++..++.|+.+      ..+.+||+.+
T Consensus       127 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~  192 (366)
T 3k26_A          127 DPNLLLSVSKDH------ALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINS  192 (366)
T ss_dssp             CTTEEEEEETTS------CEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCS
T ss_pred             CCCEEEEEeCCC------eEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCC
Confidence            556777776532      28999998886544331  11112222233333  34566666643      2488888876


Q ss_pred             Ce
Q 012184          140 MT  141 (469)
Q Consensus       140 ~~  141 (469)
                      ..
T Consensus       193 ~~  194 (366)
T 3k26_A          193 KR  194 (366)
T ss_dssp             HH
T ss_pred             Cc
Confidence            53

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.13  E-value=0.58  Score=56.40  Aligned_cols=15  Identities=13%  Similarity=0.297  Sum_probs=10.8

Q ss_pred             EEEEccCCceeeeee
Q 012184           18 MVFDLRSLAWSNLRL   32 (469)
Q Consensus        18 ~~~d~~~~~W~~~~~   32 (469)
                      +.+|+.++.|.....
T Consensus      1252 y~~~~~~~~w~~W~~ 1266 (3245)
T 3vkg_A         1252 YSVSIDDANWSLWKN 1266 (3245)
T ss_dssp             EEECTTTCSEEETTC
T ss_pred             EEEECCCCeeeehhh
Confidence            456888899977544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.13  E-value=8.2  Score=39.22  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=58.8

Q ss_pred             ceEEEEc-cCC--ceeeeeecccccCCccccCCCCCCCCCC---cCeeeEE--ECCE----EEEEccccCCCCCcceEEE
Q 012184           16 VVMVFDL-RSL--AWSNLRLETELDADKTEDSGLLEVLPPM---SDHCMVK--WGTK----LLILGGHYKKSSDSMIVRF   83 (469)
Q Consensus        16 ~~~~~d~-~~~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r---~~~~~~~--~~~~----iy~~GG~~~~~~~~~~~~~   83 (469)
                      .++.||. .++  .|+.-......           ..+..+   .....++  .++.    ||+...       ...++.
T Consensus        74 ~v~AlD~~~tG~~lW~~~~~~~~~-----------~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-------dg~l~A  135 (599)
T 1w6s_A           74 NTFALGLDDPGTILWQDKPKQNPA-----------ARAVACCDLVNRGLAYWPGDGKTPALILKTQL-------DGNVAA  135 (599)
T ss_dssp             CEEEEETTCTTSEEEEECCCCCGG-----------GGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------TSEEEE
T ss_pred             EEEEEeCCCCCcEEEEECCCCCcc-----------ccccccccccccceEEEecCCcceeEEEEEcC-------CCEEEE
Confidence            6899999 776  48875443210           001011   1223444  5666    877532       124999


Q ss_pred             EECCCCe--EEEeecCCCCCCC-CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184           84 IDLETNL--CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  146 (469)
Q Consensus        84 ~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~  146 (469)
                      +|..|++  |+.-..  ..... ....+-++.++.+|+-.+ .........++.||..|++  |+.-.
T Consensus       136 lDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~-g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          136 LNAETGETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSS-GAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCB-CGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EECCCCCEEEeecCC--CCCccceeecCCEEECCEEEEEec-ccccCCCCeEEEEECCCCcEEEEEcC
Confidence            9998886  876431  11001 112223446787765332 1111124569999999875  87653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.10  E-value=1.4  Score=42.65  Aligned_cols=107  Identities=13%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCC
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL  241 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~  241 (469)
                      ++.+++.|+.+     ..|.+||+.+.. ...+....  .....-.+++..  +..+++.|+.+     ..+.+||+.+.
T Consensus       243 ~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vwd~~~~  310 (430)
T 2xyi_A          243 HESLFGSVADD-----QKLMIWDTRNNNTSKPSHTVD--AHTAEVNCLSFNPYSEFILATGSAD-----KTVALWDLRNL  310 (430)
T ss_dssp             CTTEEEEEETT-----SEEEEEETTCSCSSSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred             CCCEEEEEeCC-----CeEEEEECCCCCCCcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEeCCCC
Confidence            44566666644     468899987652 11111000  111111122222  23478888753     35788888653


Q ss_pred             cEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCC
Q 012184          242 AWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       242 ~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      .- .+..+..      ....+..+...+ +..+++.||.++    .+.+||+..
T Consensus       311 ~~-~~~~~~~------h~~~v~~i~~sp~~~~~l~s~~~d~----~i~iwd~~~  353 (430)
T 2xyi_A          311 KL-KLHSFES------HKDEIFQVQWSPHNETILASSGTDR----RLHVWDLSK  353 (430)
T ss_dssp             TS-CSEEEEC------CSSCEEEEEECSSCTTEEEEEETTS----CCEEEEGGG
T ss_pred             CC-CeEEeec------CCCCEEEEEECCCCCCEEEEEeCCC----cEEEEeCCC
Confidence            20 0111111      112233444444 336777777655    377788754

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=93.04  E-value=1.4  Score=33.73  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=17.9

Q ss_pred             hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012184          379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ  415 (469)
Q Consensus       379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~  415 (469)
                      -++++++.+..--++++..++.++...|...++.+..
T Consensus        46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~   82 (167)
T 4gkw_A           46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQL   82 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3444444444444455555555555555544444443

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=92.90  E-value=0.64  Score=34.24  Aligned_cols=31  Identities=26%  Similarity=0.364  Sum_probs=19.0

Q ss_pred             chhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          387 THSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      .++++++|+...+.||...++++.+.+++.+
T Consensus        36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E   66 (107)
T 2k48_A           36 TLQELQENITAHEQQLVTARQKLKDAEKAVE   66 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445666666666666666666666665554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=92.88  E-value=6.5  Score=37.21  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=37.2

Q ss_pred             CCEEEEEecCC----CCCCcceEEEEECCCCcEE-EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEE
Q 012184          215 DENWYIVGGGD----NNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV  289 (469)
Q Consensus       215 ~~~l~v~GG~~----~~~~~~d~~~~d~~~~~W~-~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~  289 (469)
                      ++++|+.....    .....++++++|+.+.+-. .++ ... .|     +++ .+..++...+|+..+.    .+++.+
T Consensus       278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~-~p-----~~i-~~s~Dg~~~l~v~~~~----~~~V~V  345 (373)
T 2mad_H          278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGH-DV-----DAI-SVAQDGGPDLYALSAG----TEVLHI  345 (373)
T ss_pred             CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCC-Cc-----CeE-EECCCCCeEEEEEcCC----CCeEEE
Confidence            46788875321    1123568999999887653 332 111 11     222 2222222145554422    357999


Q ss_pred             EECCCCCC
Q 012184          290 MRLKPRDI  297 (469)
Q Consensus       290 ~d~~~~~w  297 (469)
                      +|+.+.+-
T Consensus       346 iD~~t~~v  353 (373)
T 2mad_H          346 YDAGAGDQ  353 (373)
T ss_pred             EECCCCCE
Confidence            99876543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.85  E-value=0.45  Score=57.33  Aligned_cols=11  Identities=0%  Similarity=0.129  Sum_probs=5.5

Q ss_pred             EEECCCCeEEE
Q 012184           83 FIDLETNLCGV   93 (469)
Q Consensus        83 ~~d~~t~~W~~   93 (469)
                      .+|+.++.|..
T Consensus      1253 ~~~~~~~~w~~ 1263 (3245)
T 3vkg_A         1253 SVSIDDANWSL 1263 (3245)
T ss_dssp             EECTTTCSEEE
T ss_pred             EEECCCCeeee
Confidence            33455555554

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=92.84  E-value=0.1  Score=52.92  Aligned_cols=9  Identities=0%  Similarity=-0.064  Sum_probs=5.4

Q ss_pred             eEEEEECCC
Q 012184          232 ETIVLNMTK  240 (469)
Q Consensus       232 d~~~~d~~~  240 (469)
                      .|.+|+..+
T Consensus       224 GI~v~~~~~  232 (575)
T 2i1j_A          224 GLNIYEKDD  232 (575)
T ss_dssp             EEEEEETTC
T ss_pred             eeEEEeCCC
Confidence            466776654

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=92.79  E-value=0.45  Score=34.56  Aligned_cols=12  Identities=0%  Similarity=0.210  Sum_probs=4.5

Q ss_pred             hhhhhhhcchhh
Q 012184          379 EKIDEVNSTHSE  390 (469)
Q Consensus       379 ~~~~~~~~~~~e  390 (469)
                      .++..+++.+..
T Consensus         9 ~~L~~aEeaL~~   20 (94)
T 3jsv_C            9 QQLQQAEEALVA   20 (94)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=92.73  E-value=5.3  Score=35.79  Aligned_cols=186  Identities=10%  Similarity=0.073  Sum_probs=83.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCe-EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.+++.|+.++.      +..+|+.... ...+.   ..........+..+++.+++.|+.+      ..+.+||....
T Consensus        70 ~~~~l~~~~~dg~------i~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~  134 (313)
T 3odt_A           70 EKELLLFGGKDTM------INGVPLFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSL  134 (313)
T ss_dssp             TTTEEEEEETTSC------EEEEETTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEE
T ss_pred             CCCEEEEecCCCe------EEEEEeeecCCCCccc---chhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcE
Confidence            5666667664432      6666665432 11111   0111112223333455566666643      34788883222


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      .... .   .  .......+.... ++..++.|+.+     ..+.+||..  .-....   ..+....-.+++.. ++. 
T Consensus       135 ~~~~-~---~--~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~--~~~~~~---~~~~~~~i~~~~~~~~~~-  197 (313)
T 3odt_A          135 VYNL-Q---A--HNASVWDAKVVSFSENKFLTASAD-----KTIKLWQND--KVIKTF---SGIHNDVVRHLAVVDDGH-  197 (313)
T ss_dssp             EEEE-E---C--CSSCEEEEEEEETTTTEEEEEETT-----SCEEEEETT--EEEEEE---CSSCSSCEEEEEEEETTE-
T ss_pred             EEec-c---c--CCCceeEEEEccCCCCEEEEEECC-----CCEEEEecC--ceEEEE---eccCcccEEEEEEcCCCe-
Confidence            2211 1   1  111112223222 34466666644     357788832  211111   11111222233333 455 


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      ++.|+.+     ..+.+||+.+..-...  +....      ..+..+...+++. ++.|+.++    .+.+||+.+...
T Consensus       198 ~~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~------~~i~~~~~~~~~~-l~~~~~dg----~v~iwd~~~~~~  258 (313)
T 3odt_A          198 FISCSND-----GLIKLVDMHTGDVLRT--YEGHE------SFVYCIKLLPNGD-IVSCGEDR----TVRIWSKENGSL  258 (313)
T ss_dssp             EEEEETT-----SEEEEEETTTCCEEEE--EECCS------SCEEEEEECTTSC-EEEEETTS----EEEEECTTTCCE
T ss_pred             EEEccCC-----CeEEEEECCchhhhhh--hhcCC------ceEEEEEEecCCC-EEEEecCC----EEEEEECCCCce
Confidence            6666643     3588999876543321  11111      1233344444444 55666544    588888876543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=92.72  E-value=1.4  Score=40.35  Aligned_cols=92  Identities=18%  Similarity=0.111  Sum_probs=48.6

Q ss_pred             cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce
Q 012184          131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  209 (469)
Q Consensus       131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  209 (469)
                      .+++||+.+.+-..+...   +.....+.++...++ ++|+.        .+.+++||+.+.+-......+     ....
T Consensus       220 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-----~~~~  283 (337)
T 1pby_B          220 GLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLP-----HSYY  283 (337)
T ss_dssp             EEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECS-----SCCC
T ss_pred             ceEEEeCCCCCceEeecC---CCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCC-----Ccee
Confidence            589999998876533321   111122233333344 45554        267999999877643322111     1223


Q ss_pred             EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184          210 AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       210 ~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      +++.. +++.+++++.     .+.+.+||+.+..-
T Consensus       284 ~~~~s~dg~~l~~~~~-----~~~i~v~d~~~~~~  313 (337)
T 1pby_B          284 SVNVSTDGSTVWLGGA-----LGDLAAYDAETLEK  313 (337)
T ss_dssp             EEEECTTSCEEEEESB-----SSEEEEEETTTCCE
T ss_pred             eEEECCCCCEEEEEcC-----CCcEEEEECcCCcE
Confidence            34433 3443333442     25789999987654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.66  E-value=2.2  Score=31.32  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      +.+.++.++..++..+...+.++..++.++..++.+....+.....++++
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E   55 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE   55 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666666666666666655555554444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.47  E-value=1.3  Score=33.11  Aligned_cols=15  Identities=20%  Similarity=0.434  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 012184          434 QILRQQKSAFEQEME  448 (469)
Q Consensus       434 ~~~~q~~~~~~~~~~  448 (469)
                      +.++.++++++++++
T Consensus        86 Ekl~~eKe~L~~ql~  100 (110)
T 2v4h_A           86 EKLVEKKEYLQEQLE  100 (110)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHH
Confidence            334444444444443

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=92.47  E-value=0.69  Score=31.89  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=17.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012184          418 ELQKMLESSQTIENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       418 e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      |++++...++.+++++++...+++.+..++++.
T Consensus        34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           34 ELRQRDALIDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444555555555555555555555544

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=92.42  E-value=1.4  Score=43.15  Aligned_cols=50  Identities=8%  Similarity=0.028  Sum_probs=31.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL   90 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~   90 (469)
                      .+|+||..+.+.....=. +               .+. --++....+++|+|-|.        ..|+||..+.+
T Consensus       168 ~yw~yd~~~~~~~~~~w~-g---------------i~~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~  217 (460)
T 1qhu_A          168 RKWFWDLTTGTKKERSWP-A---------------VGN-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE  217 (460)
T ss_dssp             EEEEEETTTTEEEEECCT-T---------------SCC-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred             cEEEEecccceeecccCC-C---------------CCc-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence            678999887654421111 1               122 35666678999999773        27888876543

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=92.36  E-value=2.3  Score=32.26  Aligned_cols=50  Identities=22%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Q 012184          398 VQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~~~~~~~~  447 (469)
                      -..+.+.+.++++.-|+.+.++++...+.+ ..+.++.++-...+++..++
T Consensus        43 ~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL   93 (112)
T 1x79_B           43 SSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEEL   93 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555666655555533333 34444444444444444333

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=92.33  E-value=6.1  Score=35.52  Aligned_cols=136  Identities=15%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..+|+.+++-...-....                ....-.++.+  ++..++.|+.++      .+..+|+.+++-..
T Consensus        46 tV~iWd~~tg~~~~~~~~~~----------------~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLR  103 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEEecC----------------CCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEE
Confidence            67888888877654433211                1111222333  566777777543      38889999887544


Q ss_pred             eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184           94 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  173 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG  173 (469)
                      ...   ....  ...+....+.+++.|+...      .+..++..+.........+   ............++..++.|+
T Consensus       104 ~~~---~h~~--~~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~  169 (318)
T 4ggc_A          104 NMT---SHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGG  169 (318)
T ss_dssp             EEE---CCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEE
T ss_pred             Eec---Cccc--eEEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcC---ccCceEEEEEcCCCCEEEEEe
Confidence            331   1111  2223334455555555432      3455555544332222111   111112222233455666666


Q ss_pred             CCCCcccCcEEEEECCCCc
Q 012184          174 CSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       174 ~~~~~~~~~i~~~d~~~~~  192 (469)
                      .+     ..+.++|+.+.+
T Consensus       170 ~d-----~~i~iwd~~~~~  183 (318)
T 4ggc_A          170 ND-----NLVNVWPSAPGE  183 (318)
T ss_dssp             TT-----SCEEEEESSCBT
T ss_pred             cC-----cceeEEECCCCc
Confidence            54     347888887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.31  E-value=12  Score=39.01  Aligned_cols=180  Identities=10%  Similarity=0.041  Sum_probs=93.6

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+.+||+.+.++... ..                .....-.+++..++.|++...   .     -+++||+.++++..+.
T Consensus        83 Gl~~yd~~~~~f~~~-~~----------------~~~~~i~~i~~~~g~lWigt~---~-----Gl~~~~~~~~~~~~~~  137 (758)
T 3ott_A           83 GILVYNYRADRYEQP-ET----------------DFPTDVRTMALQGDTLWLGAL---N-----GLYTYQLQSRKLTSFD  137 (758)
T ss_dssp             EEEEEETTTTEECCC-SC----------------CCCSCEEEEEEETTEEEEEET---T-----EEEEEETTTCCEEEEC
T ss_pred             CeEEEeCCCCEEECc-cc----------------CCCceEEEEEecCCcEEEEcC---C-----cceeEeCCCCeEEEec
Confidence            578899988877651 11                011111223345788877521   1     3899999999988773


Q ss_pred             cC-CCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC-CCCCCceEEEEcC-cEEEEE
Q 012184           96 TS-GKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-APRYDHSAALHAN-RYLIVF  171 (469)
Q Consensus        96 ~~-g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~-~~l~v~  171 (469)
                      .. ..+|... -.+++.. ++.|++..        .+-+++||+.+..+.......... ....-.+++...+ +.|+| 
T Consensus       138 ~~~~~l~~~~-i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-  207 (758)
T 3ott_A          138 TRRNGLPNNT-IYSIIRTKDNQIYVGT--------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-  207 (758)
T ss_dssp             HHHHCCSCSC-EEEEEECTTCCEEEEE--------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-
T ss_pred             cCCCCcCCCe-EEEEEEcCCCCEEEEe--------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE-
Confidence            21 1122221 1222222 46787731        124889999999887653211100 0111122333322 45676 


Q ss_pred             ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184          172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~  247 (469)
                      |- .     +-+++||+.+.++.....   .+. ..-.+++.. ++.|+|-..       +-+++||..+..+..+.
T Consensus       208 gt-~-----~Gl~~~~~~~~~~~~~~~---l~~-~~i~~i~~d~~g~lWigT~-------~Gl~~~~~~~~~~~~~~  267 (758)
T 3ott_A          208 GT-E-----GYLFQYFPSTGQIKQTEA---FHN-NSIKSLALDGNGDLLAGTD-------NGLYVYHNDTTPLQHII  267 (758)
T ss_dssp             EE-E-----EEEEEEETTTTEEEEEEE---EEE-EEEEEEEECTTCCEEEEET-------TEEEEECCTTSCCEEEC
T ss_pred             EE-C-----CCCeEEcCCCCeEEeccC---CCC-CeEEEEEEcCCCCEEEEeC-------CceeEEecCCCcEEEEE
Confidence            21 1     248899999888876431   111 111222222 345665321       24788998887776654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.31  E-value=11  Score=38.26  Aligned_cols=124  Identities=13%  Similarity=0.076  Sum_probs=66.9

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCC---CcceEEEEECCEEEEEeccCCCCCccCc
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVA---RGGHSVTLVGSRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~---r~~~~~~~~~~~lyi~GG~~~~~~~~~~  131 (469)
                      +-++.++.||+....       +.++.+|..|++  |+.-........+   ....+.++.++.||+...       ...
T Consensus        63 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~  128 (582)
T 1flg_A           63 QAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS  128 (582)
T ss_dssp             CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred             ccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence            446679999998652       129999998886  8875421110000   112334567888887421       345


Q ss_pred             EEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcC---c--EEEEEecCCC-CcccCcEEEEECCCCc--eEee
Q 012184          132 VHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHAN---R--YLIVFGGCSH-SIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       132 v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~---~--~l~v~GG~~~-~~~~~~i~~~d~~~~~--W~~~  196 (469)
                      ++.+|..|++  |+.-............ +-++.++   +  .+|+ |.... ......++.||+.+++  |...
T Consensus       129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~-sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFADHGAGYTMTG-APTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCS-CCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCCEEeeecCCCCCcCccccc-CCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence            9999998875  8764211000001111 2223322   1  4444 43211 1223579999998775  8753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=92.15  E-value=8.4  Score=36.75  Aligned_cols=109  Identities=11%  Similarity=0.069  Sum_probs=55.3

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      ++.+++.|+.+      ..+.+||+.+.+-...-. +. +....-.+++...++.+++.|+.+     ..+.+||+.+..
T Consensus       181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-~~-~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~  247 (437)
T 3gre_A          181 EKSLLVALTNL------SRVIIFDIRTLERLQIIE-NS-PRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNV  247 (437)
T ss_dssp             SCEEEEEEETT------SEEEEEETTTCCEEEEEE-CC-GGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTE
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeeEEEc-cC-CCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCcc
Confidence            36677777643      358999998876533221 10 011112223333356677777755     358899998765


Q ss_pred             eEeeeecCCCCCCCcceEEEEE-----CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          193 WSQPEIKGDLVTGRAGHAGITI-----DENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~-----~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      ....-.   .+....-.+++..     ++.+++.|+.+     ..+.+||+.+..
T Consensus       248 ~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~  294 (437)
T 3gre_A          248 LIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGH  294 (437)
T ss_dssp             EEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTE
T ss_pred             EEEEEe---cCCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCc
Confidence            433210   0111111112111     23455555532     257888887665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=92.07  E-value=7.9  Score=36.29  Aligned_cols=66  Identities=17%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             CCEEEEEecCC-----CCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEE
Q 012184          215 DENWYIVGGGD-----NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV  289 (469)
Q Consensus       215 ~~~l~v~GG~~-----~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~  289 (469)
                      ++.+|+....+     .....+.++++|+.+.+-.  ..++..    . .+++ .+..+ +.+||+.++      +.+.+
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v--~~i~~~----~-p~~i-a~spd-g~~l~v~n~------~~v~v  329 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV--ARIPGR----D-ALSM-TIDQQ-RNLMLTLDG------GNVNV  329 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE--EEEECT----T-CCEE-EEETT-TTEEEEECS------SCEEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEE--EEEecC----C-eeEE-EECCC-CCEEEEeCC------CeEEE
Confidence            47888875411     1123468999999887633  322211    1 1222 22223 457776553      56999


Q ss_pred             EECCCC
Q 012184          290 MRLKPR  295 (469)
Q Consensus       290 ~d~~~~  295 (469)
                      ||+.+.
T Consensus       330 ~D~~t~  335 (361)
T 2oiz_A          330 YDISQP  335 (361)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            998776

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=92.03  E-value=6.6  Score=35.29  Aligned_cols=184  Identities=11%  Similarity=0.053  Sum_probs=91.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      .+++++.|..+      ..+..+|..+++  |+.-.     +.....+.+.. -++.+|+.+        .+.++.||+ 
T Consensus         4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-   63 (276)
T 3no2_A            4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY--------SKGAKMITR-   63 (276)
T ss_dssp             CCEEEEECTTC------SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC--------BSEEEEECT-
T ss_pred             CCcEEEeeCCC------CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC--------CCCEEEECC-
Confidence            35677776532      348899998887  65443     11112233333 366777732        345999998 


Q ss_pred             CC--eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCC--CCCCcceEEEE
Q 012184          139 TM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDL--VTGRAGHAGIT  213 (469)
Q Consensus       139 t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~--p~~r~~~~~~~  213 (469)
                      ++  .|+.-.     +.....+++....++.+++.....    ...++.+|++... |+... ....  +......+...
T Consensus        64 ~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~~~  133 (276)
T 3no2_A           64 DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQINKN  133 (276)
T ss_dssp             TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCEEC
T ss_pred             CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEec-cCCCCcccccccCceEC
Confidence            44  365432     111223445555566666654321    2467888875442 44321 1111  11111122333


Q ss_pred             ECCEEEEEecCCCCCCcceEEEEECCC-CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          214 IDENWYIVGGGDNNNGCQETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       214 ~~~~l~v~GG~~~~~~~~d~~~~d~~~-~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      .++.+++....     ...+..||+.- ..|+.-.  + ..|     ++.   ...+++.+++++..++    .++.+|+
T Consensus       134 ~~G~~lv~~~~-----~~~v~~~d~~G~~~w~~~~--~-~~~-----~~~---~~~~~g~~~v~~~~~~----~v~~~d~  193 (276)
T 3no2_A          134 KKGNYLVPLFA-----TSEVREIAPNGQLLNSVKL--S-GTP-----FSS---AFLDNGDCLVACGDAH----CFVQLNL  193 (276)
T ss_dssp             TTSCEEEEETT-----TTEEEEECTTSCEEEEEEC--S-SCC-----CEE---EECTTSCEEEECBTTS----EEEEECT
T ss_pred             CCCCEEEEecC-----CCEEEEECCCCCEEEEEEC--C-CCc-----cce---eEcCCCCEEEEeCCCC----eEEEEeC
Confidence            35666665432     23688898862 3355422  1 111     222   2223456666665432    4788888


Q ss_pred             CCC
Q 012184          293 KPR  295 (469)
Q Consensus       293 ~~~  295 (469)
                      .+.
T Consensus       194 ~tG  196 (276)
T 3no2_A          194 ESN  196 (276)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            744

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.98  E-value=7.6  Score=35.87  Aligned_cols=153  Identities=6%  Similarity=0.000  Sum_probs=79.1

Q ss_pred             ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECC-
Q 012184           61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE-  138 (469)
Q Consensus        61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~-  138 (469)
                      -++.+|+.|..   .    .+++-+=.-.+|..+..    +....-+.++.. ++.+|++|-.       ..+++-+-. 
T Consensus       131 ~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-------G~~~~S~d~g  192 (327)
T 2xbg_A          131 GNGSAEMITNV---G----AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-------GSFYSTWEPG  192 (327)
T ss_dssp             ETTEEEEEETT---C----CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-------SSEEEEECTT
T ss_pred             CCCCEEEEeCC---c----cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-------CcEEEEeCCC
Confidence            46788887641   1    14443223457999873    222233444433 3566666521       225554322 


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCCCcceEEEEE-CC
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITI-DE  216 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~  216 (469)
                      ..+|+.+..    +.+...+.++...++.+|+.+..+      .+++.+.. ..+|..+.. +.++.....++++.. ++
T Consensus       193 G~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~G------~~~~s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~~~~  261 (327)
T 2xbg_A          193 QTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNGG------KIAFSDPDNSENWGELLS-PLRRNSVGFLDLAYRTPN  261 (327)
T ss_dssp             CSSCEEEEC----CSSSCEEEEEECTTSCEEEEETTT------EEEEEETTEEEEECCCBC-TTSSCCSCEEEEEESSSS
T ss_pred             CCceeECCC----CCCCccceeEECCCCCEEEEeCCc------eEEEecCCCCCeeEeccC-CcccCCcceEEEEecCCC
Confidence            578988742    334444555554567788776421      24444322 457987642 112333333444444 45


Q ss_pred             EEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184          217 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  248 (469)
Q Consensus       217 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  248 (469)
                      .+|++|+.      ..+++-.-.-..|+.+..
T Consensus       262 ~~~~~g~~------g~i~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          262 EVWLAGGA------GALLCSQDGGQTWQQDVD  287 (327)
T ss_dssp             CEEEEEST------TCEEEESSTTSSCEECGG
T ss_pred             EEEEEeCC------CeEEEeCCCCcccEEcCc
Confidence            78887762      124333334578998763

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.96  E-value=0.97  Score=32.02  Aligned_cols=6  Identities=17%  Similarity=0.501  Sum_probs=2.2

Q ss_pred             hhhhhh
Q 012184          379 EKIDEV  384 (469)
Q Consensus       379 ~~~~~~  384 (469)
                      .+++.+
T Consensus        13 ~KIq~a   18 (81)
T 2jee_A           13 AKVQQA   18 (81)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=91.95  E-value=2.7  Score=33.10  Aligned_cols=98  Identities=9%  Similarity=0.121  Sum_probs=53.3

Q ss_pred             HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----
Q 012184          353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----  427 (469)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-----  427 (469)
                      +.+|..+...|........+..+++-.+.+..-.+.++...-.+..-..+-..++....++..+.+.+.+|..+.     
T Consensus        22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~  101 (158)
T 3tul_A           22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG  101 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            555666655554333333222333322222222222223333333334555567788888888888888887777     


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHh
Q 012184          428 --TIENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       428 --~~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                        +++.++++++....+..+.++.+
T Consensus       102 Yak~~a~~~q~~~d~~~~~~~~~kA  126 (158)
T 3tul_A          102 YAQAEAAVEQAGKEATEAKEALDKA  126 (158)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              67777777777777766666644

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=91.79  E-value=0.96  Score=43.70  Aligned_cols=11  Identities=18%  Similarity=0.184  Sum_probs=4.6

Q ss_pred             HHHHHHhHHHH
Q 012184          353 IDAIKEDKRVL  363 (469)
Q Consensus       353 ~~~l~~~~~~~  363 (469)
                      |.+|+++..++
T Consensus        66 INELKnqLEdl   76 (562)
T 3ghg_A           66 INKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHHH
Confidence            44444443333

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=91.74  E-value=0.72  Score=32.38  Aligned_cols=27  Identities=19%  Similarity=0.191  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184          393 KELSSVQGQLVAERSRCFKLEAQIAEL  419 (469)
Q Consensus       393 ~el~~~~~~l~~~~~~~~~~~~~~~e~  419 (469)
                      +||..++..+...+.++.+.+...++|
T Consensus        31 EELs~vr~~ni~~eskL~eae~rn~eL   57 (81)
T 1wt6_A           31 REMEAIRTDNQNFASQLREAEARNRDL   57 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443333

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=91.72  E-value=3.7  Score=34.98  Aligned_cols=155  Identities=12%  Similarity=0.105  Sum_probs=79.0

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCC---CeEEEeecCC-CCCCCCcceEEEEECCEEEEEeccCCCCCccCc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET---NLCGVMETSG-KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t---~~W~~~~~~g-~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~  131 (469)
                      -+++..++++|+|-|.        .+|+++...   +-=..+...- .+|. ....+....++++|+|-|        +.
T Consensus         9 DA~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~   71 (196)
T 3c7x_A            9 DTVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DK   71 (196)
T ss_dssp             SEEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TE
T ss_pred             cEEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CE
Confidence            3455779999999763        278875421   0001111110 1332 223222223678999865        34


Q ss_pred             EEEEECCCCeE---EEeeeCC-CCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeecCCC-C
Q 012184          132 VHFLDLETMTW---DAVEVTQ-TPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKGDL-V  203 (469)
Q Consensus       132 v~~~d~~t~~W---~~~~~~g-~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~~~-p  203 (469)
                      +|+|+..+...   +.+...+ .+|.... -++... .++++|+|-|       +..|+||..+.+-..  +...... .
T Consensus        72 yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~g  143 (196)
T 3c7x_A           72 HWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEG  143 (196)
T ss_dssp             EEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBT
T ss_pred             EEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCC
Confidence            78887432110   1121111 1332222 233333 3689999987       568999987654322  1111111 1


Q ss_pred             CCCcceEEEEE-CC-EEEEEecCCCCCCcceEEEEECCCCc
Q 012184          204 TGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       204 ~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      .|..-.++... ++ ++|+|=|       +..|+||..+..
T Consensus       144 ip~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~  177 (196)
T 3c7x_A          144 IPESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK  177 (196)
T ss_dssp             CCSSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred             cCCCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence            12223344444 44 8999977       378999987754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=91.49  E-value=14  Score=38.02  Aligned_cols=113  Identities=16%  Similarity=0.112  Sum_probs=61.4

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.+|..+++  |+.-......     ...   .........+.++.++.||+...       ...++.+|..|++  |
T Consensus        77 ~v~AlD~~tG~~~W~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           77 RVIAVDAASGKELWRYDPEVAKV-----KAR---TSCCDAVNRGVALWGDKVYVGTL-------DGRLIALDAKTGKAIW  141 (668)
T ss_dssp             EEEEEETTTCCEEEEECCCCCGG-----GGG---GCTTCSCCCCCEEEBTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred             eEEEEECCCChhceEECCCCCcc-----ccc---cccccCCccceEEECCEEEEEcC-------CCEEEEEECCCCCEee
Confidence            68999988764  8765432110     000   00001112334567888887642       1349999999886  8


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  145 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~  145 (469)
                      +.-... .........+.++.++.+|+-.+ .........++.||+.|++  |+.-
T Consensus       142 ~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~-~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          142 SQQTTD-PAKPYSITGAPRVVKGKVIIGNG-GAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EEECSC-TTSSCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             eeccCC-CCCcceecCCCEEECCEEEEeCC-CCCcCCCCEEEEEECCCCcEEEEec
Confidence            765421 11111222233456787776322 2111134579999998875  8764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=91.48  E-value=8.5  Score=35.46  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=14.0

Q ss_pred             cCcEEEEEecCCCCcccCcEEEEECC
Q 012184          164 ANRYLIVFGGCSHSIFFNDLHVLDLQ  189 (469)
Q Consensus       164 ~~~~l~v~GG~~~~~~~~~i~~~d~~  189 (469)
                      .++..++.|+.+     ..+.+||+.
T Consensus       223 ~~g~~l~sgs~d-----g~v~iwd~~  243 (343)
T 2xzm_R          223 PNGKYIATGGKD-----KKLLIWDIL  243 (343)
T ss_dssp             TTSSEEEEEETT-----CEEEEEESS
T ss_pred             CCCCEEEEEcCC-----CeEEEEECC
Confidence            356677777754     357888874

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=91.39  E-value=2  Score=32.51  Aligned_cols=12  Identities=25%  Similarity=0.360  Sum_probs=4.7

Q ss_pred             cchhhHHHHHHH
Q 012184          386 STHSELSKELSS  397 (469)
Q Consensus       386 ~~~~e~~~el~~  397 (469)
                      +...+++.++.+
T Consensus        29 ~~k~eL~~~~~~   40 (107)
T 2no2_A           29 REKKELEDSLER   40 (107)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333334444443

>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}

Probab=91.39  E-value=1.3  Score=33.16  Aligned_cols=59  Identities=24%  Similarity=0.343  Sum_probs=32.6

Q ss_pred             chhhHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184          387 THSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQTIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~----e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~  447 (469)
                      .++++++++...+.||...++++.+.+++.+    |+.  ++..++++.++..++.++.++.+++
T Consensus        23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevN--K~tl~~R~~~Vs~lq~KiaeLKrqL   85 (113)
T 4fi5_A           23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELN--KRTLTDREGVAVSIQAKIDELKRQL   85 (113)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777777777666554    222  2233333444444444444444444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=91.30  E-value=12  Score=37.02  Aligned_cols=135  Identities=11%  Similarity=0.071  Sum_probs=64.6

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      ++.+++.|+.+      ..+.+||.....-..+..     ....-.+++...++.+++.|+.+     ..+.++|.....
T Consensus       437 d~~~l~~~~~d------~~v~~w~~~~~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~  500 (577)
T 2ymu_A          437 DDQTIASASDD------KTVKLWNRNGQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQL  500 (577)
T ss_dssp             TSSEEEEEETT------SEEEEEETTSCEEEEEEC-----CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCE
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCE
Confidence            45566666543      247888876655444431     11111233333466677777654     347788864433


Q ss_pred             eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc
Q 012184          193 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  271 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~  271 (469)
                      -..+.  +  .... -.+++.. ++++++.|+.+     ..+.+||........+.   +..      -.+..+...+++
T Consensus       501 ~~~~~--~--h~~~-v~~l~~s~dg~~l~s~~~d-----g~v~lwd~~~~~~~~~~---~h~------~~v~~~~fs~dg  561 (577)
T 2ymu_A          501 LQTLT--G--HSSS-VRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLT---GHS------SSVWGVAFSPDG  561 (577)
T ss_dssp             EEEEE--C--CSSC-EEEEEECTTSSCEEEEETT-----SEEEEECTTSCEEEEEE---CCS------SCEEEEEECTTS
T ss_pred             EEEEe--C--CCCC-EEEEEEcCCCCEEEEEECc-----CEEEEEeCCCCEEEEEc---CCC------CCEEEEEEcCCC
Confidence            22221  1  1111 1122222 45666776643     24777886554333322   111      112233344555


Q ss_pred             EEEEEeccCCC
Q 012184          272 HLVAFGGYNGK  282 (469)
Q Consensus       272 ~l~v~GG~~~~  282 (469)
                      .+++.||.++.
T Consensus       562 ~~l~s~~~D~~  572 (577)
T 2ymu_A          562 QTIASASSDKT  572 (577)
T ss_dssp             SCEEEEETTSC
T ss_pred             CEEEEEeCCCE
Confidence            66677776653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=91.22  E-value=13  Score=37.09  Aligned_cols=144  Identities=13%  Similarity=0.123  Sum_probs=72.1

Q ss_pred             CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc-eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          114 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       114 ~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      +.+++.|+..     ...+.+||+.+..... .   ........- ++....++.+++.|+.+     ..+.+||+.+..
T Consensus       456 ~~~l~~~~~~-----d~~i~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iw~~~~~~  521 (615)
T 1pgu_A          456 QNYVAVGLEE-----GNTIQVFKLSDLEVSF-D---LKTPLRAKPSYISISPSETYIAAGDVM-----GKILLYDLQSRE  521 (615)
T ss_dssp             SSEEEEEETT-----TSCEEEEETTEEEEEE-E---CSSCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred             CCEEEEeecC-----CCeEEEEECCCccccc-c---ccCCccCceEEEEECCCCCEEEEcCCC-----CeEEEeeCCCCc
Confidence            5566666541     2248999998876543 2   111112222 23333356677777654     458899988765


Q ss_pred             eEeeeecCCCCCCCcceEEEEE-----------CCEEEEEecCCCCCCcceEEEEECCCCc--EEEeccCCCCCCCCCCC
Q 012184          193 WSQPEIKGDLVTGRAGHAGITI-----------DENWYIVGGGDNNNGCQETIVLNMTKLA--WSILTSVKGRNPLASEG  259 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~-----------~~~l~v~GG~~~~~~~~d~~~~d~~~~~--W~~~~~~~~~~p~~r~~  259 (469)
                      -....   .......-.+++..           ++.+++.|+.++     .+.+||+.+..  ...+   ....      
T Consensus       522 ~~~~~---~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~---~~h~------  584 (615)
T 1pgu_A          522 VKTSR---WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-----NIFIYSVKRPMKIIKAL---NAHK------  584 (615)
T ss_dssp             EEECC---SCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-----CEEEEESSCTTCCEEET---TSST------
T ss_pred             ceeEe---ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-----cEEEEECCCCceechhh---hcCc------
Confidence            43311   10011111122222           456777776432     58889987752  2222   1111      


Q ss_pred             cceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          260 LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       260 ~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      ..+..+...+++. ++.||.++.    +.+|+++
T Consensus       585 ~~v~~l~~s~~~~-l~s~~~d~~----v~iw~~~  613 (615)
T 1pgu_A          585 DGVNNLLWETPST-LVSSGADAC----IKRWNVV  613 (615)
T ss_dssp             TCEEEEEEEETTE-EEEEETTSC----EEEEEEC
T ss_pred             cceEEEEEcCCCC-eEEecCCce----EEEEeee
Confidence            1222223333456 777776653    6666654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=91.21  E-value=8.4  Score=34.93  Aligned_cols=187  Identities=13%  Similarity=0.079  Sum_probs=89.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      ++.+++.|+.+.      .+..++...........   ............-.+.+++.|+.+.      .+.++|+....
T Consensus        97 dg~~l~s~~~d~------~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~  161 (340)
T 4aow_A           97 DGQFALSGSWDG------TLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVC  161 (340)
T ss_dssp             TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCE
T ss_pred             CCCEEEEEcccc------cceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCc
Confidence            556666766442      37788888777655542   1222122222222345556665432      36777776554


Q ss_pred             EEEeeeCCCCCCCCCCceEEEE---cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE
Q 012184          142 WDAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  217 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~---~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  217 (469)
                      -......+    .......+.+   ....+++.|+.+     ..+.+||+.+....... .+  .. ..-.+++.. ++.
T Consensus       162 ~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~~~~~~~-~~--h~-~~v~~~~~s~~~~  228 (340)
T 4aow_A          162 KYTVQDES----HSEWVSCVRFSPNSSNPIIVSCGWD-----KLVKVWNLANCKLKTNH-IG--HT-GYLNTVTVSPDGS  228 (340)
T ss_dssp             EEEECSSS----CSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTTEEEEEE-CC--CS-SCEEEEEECTTSS
T ss_pred             eEEEEecc----ccCcccceEEccCCCCcEEEEEcCC-----CEEEEEECCCCceeeEe-cC--CC-CcEEEEEECCCCC
Confidence            33332111    1111122222   123456666544     35788998877654322 11  11 111222222 456


Q ss_pred             EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +++.|+.+     ..+.+||+.+..-...  +...       ..+..+...++..++ .|+.++    .+.+||+...
T Consensus       229 ~l~s~s~D-----g~i~iwd~~~~~~~~~--~~~~-------~~v~~~~~~~~~~~~-~~~~d~----~i~iwd~~~~  287 (340)
T 4aow_A          229 LCASGGKD-----GQAMLWDLNEGKHLYT--LDGG-------DIINALCFSPNRYWL-CAATGP----SIKIWDLEGK  287 (340)
T ss_dssp             EEEEEETT-----CEEEEEETTTTEEEEE--EECS-------SCEEEEEECSSSSEE-EEEETT----EEEEEETTTT
T ss_pred             EEEEEeCC-----CeEEEEEeccCceeee--ecCC-------ceEEeeecCCCCcee-eccCCC----EEEEEECCCC
Confidence            77777753     2577888877553322  1111       112233334444444 455443    4777887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=91.17  E-value=15  Score=37.92  Aligned_cols=168  Identities=15%  Similarity=0.088  Sum_probs=84.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCC-------CCccCcEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRS-------RKLLNDVH  133 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~-------~~~~~~v~  133 (469)
                      +++.++|+-.. .+.....++++|+.++.......    +..+....+-. +++ ||+.. ....       ......|+
T Consensus       139 Dg~~lAy~~~~-~G~~~~~i~v~dl~tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~-~~~~~~~~~~~~~~~~~v~  211 (693)
T 3iuj_A          139 DGRILAYSLSL-AGSDWREIHLMDVESKQPLETPL----KDVKFSGISWL-GNEGFFYSS-YDKPDGSELSARTDQHKVY  211 (693)
T ss_dssp             TSSEEEEEEEC-SSCCEEEEEEEETTTCSEEEEEE----EEEESCCCEEE-TTTEEEEEE-SSCCC-------CCCCEEE
T ss_pred             CCCEEEEEEec-CCCceEEEEEEECCCCCCCcccc----CCceeccEEEe-CCCEEEEEE-ecCcccccccccCCCcEEE
Confidence            55555553222 22223569999999998765432    11222222223 554 55443 2211       12355689


Q ss_pred             EEECCCCeE--EEeeeCCCCCC--CCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCC--ceEeeeecCCCCCCC
Q 012184          134 FLDLETMTW--DAVEVTQTPPA--PRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTN--EWSQPEIKGDLVTGR  206 (469)
Q Consensus       134 ~~d~~t~~W--~~~~~~g~~p~--~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~--~W~~~~~~~~~p~~r  206 (469)
                      ++++.+..=  ..+.   ..+.  +.....+..-.|+ +|++....+.  ..+++|++|+.+.  .|..+..    +...
T Consensus       212 ~~~lgt~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~----~~~~  282 (693)
T 3iuj_A          212 FHRLGTAQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQG----DLDA  282 (693)
T ss_dssp             EEETTSCGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEEC----SSSS
T ss_pred             EEECCCCcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeC----CCCc
Confidence            998877642  1221   1111  2222223332344 4444333222  2378999998766  6777641    1111


Q ss_pred             cceEEEEECCEEEEEecCCCCCCcceEEEEECCC---CcEEEec
Q 012184          207 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK---LAWSILT  247 (469)
Q Consensus       207 ~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~---~~W~~~~  247 (469)
                      ........++.+|++...+  .....++.+|+.+   ..|+.+.
T Consensus       283 ~~~~~~~~g~~l~~~t~~~--~~~~~l~~~d~~~~~~~~~~~l~  324 (693)
T 3iuj_A          283 DVSLVDNKGSTLYLLTNRD--APNRRLVTVDAANPGPAHWRDLI  324 (693)
T ss_dssp             CEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEE
T ss_pred             eEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCccccEEEe
Confidence            1112334578888886532  2245799999876   3487654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=91.10  E-value=9.2  Score=35.14  Aligned_cols=135  Identities=11%  Similarity=-0.048  Sum_probs=68.9

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+++||+.++....+..                 + ......+..-++.+|+...        +.+++||+.++....+.
T Consensus        72 ~i~~~d~~~~~~~~~~~-----------------~-~~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           72 ELHELHLASGRKTVHAL-----------------P-FMGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEETTTTEEEEEEC-----------------S-SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCcEEEEEC-----------------C-CcceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEe
Confidence            67888888776554432                 1 1111112234778777531        23999999999988775


Q ss_pred             cCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEe
Q 012184           96 TSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFG  172 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~G  172 (469)
                      .... ..+........+  ++++|+-............+++|+  +.+...+.....     ....++...++ .+|+..
T Consensus       126 ~~~~-~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-----~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          126 ELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-----IPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-----SEEEEEECTTSCEEEEEE
T ss_pred             eCCC-CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-----ccCCeEEcCCCCEEEEEE
Confidence            3211 111111222223  466765321111111345799999  566655432101     11223333244 577764


Q ss_pred             cCCCCcccCcEEEEECC
Q 012184          173 GCSHSIFFNDLHVLDLQ  189 (469)
Q Consensus       173 G~~~~~~~~~i~~~d~~  189 (469)
                      ..     .+.|++||+.
T Consensus       198 ~~-----~~~I~~~d~~  209 (326)
T 2ghs_A          198 TK-----VNRLMRVPLD  209 (326)
T ss_dssp             TT-----TCEEEEEEBC
T ss_pred             CC-----CCEEEEEEcc
Confidence            32     2579999975

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=90.97  E-value=9.5  Score=35.05  Aligned_cols=147  Identities=9%  Similarity=-0.011  Sum_probs=77.0

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      ++.+|+++...      ..+++||+.++....+..    +. .....+..-++++|+..        .+.+++||+.+++
T Consensus        60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~----~~-~v~~i~~~~dg~l~v~~--------~~gl~~~d~~~g~  120 (326)
T 2ghs_A           60 SGTAWWFNILE------RELHELHLASGRKTVHAL----PF-MGSALAKISDSKQLIAS--------DDGLFLRDTATGV  120 (326)
T ss_dssp             TTEEEEEEGGG------TEEEEEETTTTEEEEEEC----SS-CEEEEEEEETTEEEEEE--------TTEEEEEETTTCC
T ss_pred             CCEEEEEECCC------CEEEEEECCCCcEEEEEC----CC-cceEEEEeCCCeEEEEE--------CCCEEEEECCCCc
Confidence            46788876432      249999999987766542    21 11222223367777753        1249999999998


Q ss_pred             EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CC-EE
Q 012184          142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-NW  218 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l  218 (469)
                      ...+...........-..++...++.+|+..... .......+++|+  +.+...+...    . .....++.. ++ .+
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----~-~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----I-SIPNSICFSPDGTTG  193 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----E-SSEEEEEECTTSCEE
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----C-cccCCeEEcCCCCEE
Confidence            8766422110111111233333466677633111 112235789998  4665544211    0 111233333 33 56


Q ss_pred             EEEecCCCCCCcceEEEEECC
Q 012184          219 YIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      |+....     .+.+++||+.
T Consensus       194 yv~~~~-----~~~I~~~d~~  209 (326)
T 2ghs_A          194 YFVDTK-----VNRLMRVPLD  209 (326)
T ss_dssp             EEEETT-----TCEEEEEEBC
T ss_pred             EEEECC-----CCEEEEEEcc
Confidence            776432     2478999975

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=90.95  E-value=15  Score=37.79  Aligned_cols=77  Identities=10%  Similarity=-0.065  Sum_probs=38.6

Q ss_pred             CCEEEEEccccCCC---CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKS---SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~---~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      +++.++++......   .....++.+|+.++.-..+.... .........+..=+++.++++..       +.++++|+.
T Consensus        71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~  142 (723)
T 1xfd_A           71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHV  142 (723)
T ss_dssp             TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSS
T ss_pred             CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccccccEECCCCCEEEEEEC-------CeEEEEECC
Confidence            55545554432221   13367999999988765554211 11111111111113443444332       368888888


Q ss_pred             CCeEEEee
Q 012184          139 TMTWDAVE  146 (469)
Q Consensus       139 t~~W~~~~  146 (469)
                      ++....+.
T Consensus       143 ~g~~~~~~  150 (723)
T 1xfd_A          143 GKQAIRVV  150 (723)
T ss_dssp             SSCCEEEE
T ss_pred             CCceEEEe
Confidence            87766654

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=90.88  E-value=3.2  Score=29.47  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=14.8

Q ss_pred             HHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184          362 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS  397 (469)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~  397 (469)
                      .++..+.......+++-++.++++..+..++.+-.+
T Consensus         8 ~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~   43 (101)
T 1d7m_A            8 GLENSLESEKVSREQLIKQKDQLNSLLASLESEGAE   43 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444434444444444444444444333333

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=90.86  E-value=12  Score=36.11  Aligned_cols=106  Identities=17%  Similarity=0.093  Sum_probs=54.5

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC---CCCCcceEEEEECCCCeEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK---KSSDSMIVRFIDLETNLCG   92 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~---~~~~~~~~~~~d~~t~~W~   92 (469)
                      .+.++|+.+++=...-+.+               ..+  +.++...+..+|+.--...   .+...+.+.++|+.+++-.
T Consensus       100 ~VsVID~~t~~vv~~I~vG---------------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGG---------------FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             EEEEEETTTTEEEEEEEEC---------------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             eEEEEECCCCEEEEEEECC---------------CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            8899999887654333332               112  2222222566777742100   0112356999999998754


Q ss_pred             E-eecCCCCC--CCCcceEEEE--ECCEEEEEeccCCCCCccCcEEEEECCCCeEE
Q 012184           93 V-METSGKVP--VARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD  143 (469)
Q Consensus        93 ~-~~~~g~~p--~~r~~~~~~~--~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~  143 (469)
                      . +...+...  ....-+.++.  -+.++|+..- .    ..+.+.++|+.+++-.
T Consensus       163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-~----~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-S----PAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-S----SSCEEEEEETTTTEEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEec-C----CCCeEEEEECCCCeEE
Confidence            3 33211000  0011122222  2446887631 1    2467999999998754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=90.77  E-value=9.5  Score=34.75  Aligned_cols=195  Identities=11%  Similarity=0.003  Sum_probs=95.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      .+++||+.+++...+...                + ...-++++.. ++++|+.......  ....+++||+.+.....+
T Consensus        67 ~i~~~d~~~~~~~~~~~~----------------~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           67 NIFKINPETKEIKRPFVS----------------H-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDI  127 (333)
T ss_dssp             EEEEECTTTCCEEEEEEC----------------S-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEE
T ss_pred             EEEEEeCCCCcEEEEeeC----------------C-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEEEE
Confidence            688888888887765432                1 1112333332 5677776532211  124599999998876644


Q ss_pred             ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEe
Q 012184           95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFG  172 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~G  172 (469)
                      ...  .+....-..++.- ++.+|+.............+++||+.+.+...+...  ..   ....++...++ .||+..
T Consensus       128 ~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~i~~~~dg~~l~v~~  200 (333)
T 2dg1_A          128 IED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIALSTDEKVLWVTE  200 (333)
T ss_dssp             ECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEECTTSSEEEEEE
T ss_pred             Ecc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CC---cccceEECCCCCEEEEEe
Confidence            321  1111111222222 467777543221111245699999888776655321  11   11233333343 577764


Q ss_pred             cCCCCcccCcEEEEECCCC--ceEeeee--cCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184          173 GCSHSIFFNDLHVLDLQTN--EWSQPEI--KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       173 G~~~~~~~~~i~~~d~~~~--~W~~~~~--~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~  246 (469)
                      ..     .+.+++||+.+.  ....+..  ....+.......++.. ++.+|+....     .+.+.+||+....-..+
T Consensus       201 ~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~~~  269 (333)
T 2dg1_A          201 TT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQI  269 (333)
T ss_dssp             GG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred             CC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEEEE
Confidence            32     256899998542  2322110  0001111111223332 4667776431     13688999865443333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=90.76  E-value=5.7  Score=32.18  Aligned_cols=67  Identities=15%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             HHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          361 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       361 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      ..++..+.........|...-..........+.++..+..++.....|....++.++.|++.+...+
T Consensus        45 ~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE  111 (155)
T 2efr_A           45 AELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE  111 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444334444444555566666666666666666666666666666655444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.51  E-value=10  Score=34.80  Aligned_cols=108  Identities=14%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      ++.+++.|+.+.      .+.+||+.+..-.....   ........++....++.+++.|+.+     ..|.+||+.+..
T Consensus       138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~  203 (343)
T 3lrv_A          138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPD  203 (343)
T ss_dssp             -CCEEEEEETTC------CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTT
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCC
Confidence            345666676443      48899998887644331   1112123344444467777777755     468999998776


Q ss_pred             eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          193 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      -......+  .....-.+++.. ++..++.|+ ++     .+.+||+.+..
T Consensus       204 ~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~  246 (343)
T 3lrv_A          204 QASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDV  246 (343)
T ss_dssp             SCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTSST
T ss_pred             CCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCC
Confidence            43111011  011111122222 455666666 22     68889987653

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=90.50  E-value=1.7  Score=32.19  Aligned_cols=56  Identities=14%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT  428 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~  428 (469)
                      ++.-|+-.+++.++...++.++..+...++..++..+..++.++.+++.++.+..+
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~   86 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREE   86 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666666666666666666666666666666666666666666555543

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=90.45  E-value=8.2  Score=37.60  Aligned_cols=157  Identities=10%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCC---CCCCCcceEEEEE--CCEEEEEeccCCCCCccC
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK---VPVARGGHSVTLV--GSRLIIFGGEDRSRKLLN  130 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~---~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~  130 (469)
                      -+++..++++|+|-|..        +|+++.....+........   +|. ... ++...  ++++|+|=|.        
T Consensus       266 DAi~~~~ge~y~Fkg~~--------~wr~~~~~~~~~p~~I~~~Wp~LP~-~iD-Aa~~~~~~g~~~fFKg~--------  327 (450)
T 1su3_A          266 DAITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPN-GLE-AAYEFADRDEVRFFKGN--------  327 (450)
T ss_dssp             SEEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCS-SCC-EEEEEGGGTEEEEEETT--------
T ss_pred             ceEEecCCeEEEEeCCE--------EEEEcCCCCcccceehhHhccCCCC-Cee-EEEEEcCCCeEEEEeCC--------
Confidence            35667899999997632        7777765544433322211   222 122 22222  6899999553        


Q ss_pred             cEEEEECCCCe--E-EEee-eCCCCCC-CCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeecC-C
Q 012184          131 DVHFLDLETMT--W-DAVE-VTQTPPA-PRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKG-D  201 (469)
Q Consensus       131 ~v~~~d~~t~~--W-~~~~-~~g~~p~-~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~-~  201 (469)
                      .+|+|+..+..  + ..+. ..| .|. +..--++... .++++|+|-|       +..|+||..+.+-..  +.... .
T Consensus       328 ~~W~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~  399 (450)
T 1su3_A          328 KYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHD  399 (450)
T ss_dssp             EEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHH
T ss_pred             EEEEecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhc
Confidence            36777632100  0 1111 011 222 1112233333 3689999987       679999976544321  11000 0


Q ss_pred             C-CCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          202 L-VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       202 ~-p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      . ..+..-.++...++++|+|-|       +..|+||..+..-..
T Consensus       400 fpgip~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~  437 (450)
T 1su3_A          400 FPGIGHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT  437 (450)
T ss_dssp             STTSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             CCCCCCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence            1 112222355556899999977       378999988776543

>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}

Probab=90.28  E-value=2.3  Score=29.76  Aligned_cols=60  Identities=18%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184          386 STHSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQTIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~----e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~  447 (469)
                      ..++++++++...+.||...++++.+.+++.+    |+.  .+..++...++..++.++.++.+++
T Consensus         5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN--K~~~~~R~~~V~~lq~Ki~elkrql   68 (78)
T 2ic6_A            5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN--KSTLQSRRAAVSALETKLGELKREL   68 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667788888888888888888777776654    222  2333344445555555555555554

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=90.20  E-value=4  Score=29.76  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q 012184          429 IENEVQILRQQKSAFEQEMERATS  452 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~~~~~~~~~  452 (469)
                      .+...+.+..++..++..+.++++
T Consensus        61 aEe~~~~L~~~K~eLE~~l~el~~   84 (89)
T 3bas_A           61 LEDKVEELLSKNYHLENEVARLKK   84 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445544444433

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=89.91  E-value=1.8  Score=30.40  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=9.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhh
Q 012184          405 ERSRCFKLEAQIAELQKMLESSQT  428 (469)
Q Consensus       405 ~~~~~~~~~~~~~e~~~~l~~~~~  428 (469)
                      ++..+.+++++..++++.+.....
T Consensus        44 L~~mi~~l~~E~~~l~~ni~~lk~   67 (78)
T 3iv1_A           44 LEEMVTRLDQEVAEVDKNIELLKK   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444333333

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=89.65  E-value=26  Score=38.08  Aligned_cols=75  Identities=23%  Similarity=0.211  Sum_probs=40.8

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC----CCCccCcEEEEEC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR----SRKLLNDVHFLDL  137 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~----~~~~~~~v~~~d~  137 (469)
                      +++.+++++..      ..++.+|+.++.-..+...   ........+..-+++.+++++...    .....+.++++|+
T Consensus       389 DG~~la~~~~~------~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          389 NGKFAVVANDR------FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             CCCEEEEECCC------CeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence            55555555432      2599999999987766521   111111111222455555554422    1112457999999


Q ss_pred             CCCeEEEe
Q 012184          138 ETMTWDAV  145 (469)
Q Consensus       138 ~t~~W~~~  145 (469)
                      .+.....+
T Consensus       460 ~~g~~~~l  467 (1045)
T 1k32_A          460 EGRKIFAA  467 (1045)
T ss_dssp             TTTEEEEC
T ss_pred             CCCcEEEe
Confidence            98875444

>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}

Probab=89.47  E-value=2.5  Score=30.78  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          386 STHSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      ..++++++++...+.||...++++.+.+++.+
T Consensus         5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e   36 (96)
T 2ic9_A            5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVE   36 (96)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45677888888888888888888877777654

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=89.36  E-value=1.5  Score=31.02  Aligned_cols=26  Identities=4%  Similarity=0.101  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          391 LSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       391 ~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      +...++.++..++.+++++..++.++
T Consensus        11 ~~~klq~~E~rN~~Le~~v~~le~~L   36 (79)
T 3cvf_A           11 TQQKVQDLETRNAELEHQLRAMERSL   36 (79)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33444444444444444444444443

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=89.19  E-value=10  Score=32.80  Aligned_cols=156  Identities=12%  Similarity=0.114  Sum_probs=81.0

Q ss_pred             CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe-EEEee--cCC-CCCCCCcceEEEE-ECCEEEEEeccCCCCCcc
Q 012184           55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVME--TSG-KVPVARGGHSVTL-VGSRLIIFGGEDRSRKLL  129 (469)
Q Consensus        55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~--~~g-~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~  129 (469)
                      .-+++..++++|+|=|.        .+|+++..... .....  ... .+| .....+... .++++|+|-|        
T Consensus        33 ~DAi~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp-~~IDAA~~~~~~~k~yfFkG--------   95 (218)
T 1gen_A           33 FDGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELP-EKIDAVYEAPQEEKAVFFAG--------   95 (218)
T ss_dssp             CSEEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSC-SCCSEEEEETTTTEEEEEET--------
T ss_pred             EeEEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCC-CCccEEEEECCCCEEEEEeC--------
Confidence            34566779999999663        27777655422 22211  111 122 222222222 2578999955        


Q ss_pred             CcEEEEECCCCe---EEEeeeCCCCCCC-CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEee---eecCC
Q 012184          130 NDVHFLDLETMT---WDAVEVTQTPPAP-RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP---EIKGD  201 (469)
Q Consensus       130 ~~v~~~d~~t~~---W~~~~~~g~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~---~~~~~  201 (469)
                      +..|+|+-.+..   =+.+...| .|.. ..-.++... .++++|+|-|       +..|+||..+.+-..-   .+...
T Consensus        96 ~~yW~y~~~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~  167 (218)
T 1gen_A           96 NEYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADA  167 (218)
T ss_dssp             TEEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHH
T ss_pred             CEEEEEcCccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhc
Confidence            347888842100   01111112 2221 122334433 4789999987       5789999876643221   00000


Q ss_pred             -CCCCCcceEEEEEC--CEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          202 -LVTGRAGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       202 -~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                       +..+..-.++...+  +.+|+|=|       +..|+||..+..
T Consensus       168 w~g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~  204 (218)
T 1gen_A          168 WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK  204 (218)
T ss_dssp             SSSCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred             cCCCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence             11223334555544  78999977       368899886554

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=89.15  E-value=0.96  Score=35.05  Aligned_cols=31  Identities=26%  Similarity=0.265  Sum_probs=12.0

Q ss_pred             chhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184          387 THSELSKELSSVQGQLVAERSRCFKLEAQIA  417 (469)
Q Consensus       387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~  417 (469)
                      .+.+++.++.+.+.+.++....+..+..+++
T Consensus        48 ~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~   78 (120)
T 3i00_A           48 HVSELEADLAEQQHLRQQAADDCEFLRAELD   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444443333333333333443333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=88.92  E-value=2.1  Score=30.67  Aligned_cols=30  Identities=33%  Similarity=0.245  Sum_probs=12.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          398 VQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      ++.++..++..+..|.-++++++.++.+++
T Consensus        25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~   54 (83)
T 2xdj_A           25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVV   54 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333444444444444444444444444443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=88.82  E-value=13  Score=33.45  Aligned_cols=196  Identities=10%  Similarity=0.073  Sum_probs=91.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCC--eEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFL  135 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~  135 (469)
                      ++.+++.|+.++      .+..||+.+.  .+..+..   .......-.++.+    ++.+++.|+.+.      .+.+|
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~dg------~v~vw   86 (351)
T 3f3f_A           22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYDK------TVKLW   86 (351)
T ss_dssp             SSSEEEEEETTS------EEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETTS------CEEEE
T ss_pred             CCCEEEEeeCCC------eEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCCC------eEEEE
Confidence            555666666432      3667776643  4444331   1112222233333    256777776543      37788


Q ss_pred             ECCCC-------eEEEeeeCCCCCCCCCCceEEEEcC--cEEEEEecCCCCcccCcEEEEECCCCc----eEeeeec---
Q 012184          136 DLETM-------TWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIK---  199 (469)
Q Consensus       136 d~~t~-------~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~---  199 (469)
                      |+.+.       .|..+......  ...-.++....+  +.+++.|+.+     ..+.+||+.+..    |......   
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             ecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhcccccccccccc
Confidence            87764       33333321111  111122233223  5566666654     358889987654    3221100   


Q ss_pred             CCCCCCC--cceEEEEE----CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc--
Q 012184          200 GDLVTGR--AGHAGITI----DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH--  271 (469)
Q Consensus       200 ~~~p~~r--~~~~~~~~----~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~--  271 (469)
                      ...+...  ...++...    ++.++++|+.++     .+..++........+..+....      ..+..+...+++  
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~------~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHK------SLIRSISWAPSIGR  228 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCCC------SCEEEEEECCCSSC
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCCC------cceeEEEECCCCCC
Confidence            0111111  11122222    256777776432     3445555555554444333221      123334444444  


Q ss_pred             --EEEEEeccCCCCCceEEEEECCC
Q 012184          272 --HLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       272 --~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                        .+++.|+.++.    +.+||+..
T Consensus       229 ~~~~l~s~~~dg~----i~iwd~~~  249 (351)
T 3f3f_A          229 WYQLIATGCKDGR----IRIFKITE  249 (351)
T ss_dssp             SSEEEEEEETTSC----EEEEEEEE
T ss_pred             cceEEEEEcCCCe----EEEEeCCC
Confidence              78888887663    66666643

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.68  E-value=1.6  Score=42.15  Aligned_cols=29  Identities=10%  Similarity=0.195  Sum_probs=19.0

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184          420 QKMLESSQTIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       420 ~~~l~~~~~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      ..+++.++.|+.-++.++.+++++|-.++
T Consensus       127 dnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          127 IEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455556677777777777777776654

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=88.20  E-value=6.9  Score=29.56  Aligned_cols=12  Identities=25%  Similarity=0.459  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 012184          391 LSKELSSVQGQL  402 (469)
Q Consensus       391 ~~~el~~~~~~l  402 (469)
                      +++.+.++..++
T Consensus        27 ~e~~k~eL~~~~   38 (107)
T 2no2_A           27 LEREKKELEDSL   38 (107)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=88.16  E-value=5.5  Score=31.84  Aligned_cols=11  Identities=9%  Similarity=0.096  Sum_probs=3.9

Q ss_pred             chhhHHHHHHH
Q 012184          387 THSELSKELSS  397 (469)
Q Consensus       387 ~~~e~~~el~~  397 (469)
                      .+.+++.+++.
T Consensus        83 ki~dLeeel~e   93 (152)
T 3a7p_A           83 EIRRLKEVIAL   93 (152)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=87.91  E-value=16  Score=33.39  Aligned_cols=186  Identities=10%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      .+ +++.|+.+.      .+..||+.++.+..+... ..........++.+  ++.+++.|+.+.      .+.+||+..
T Consensus        24 ~~-~las~~~D~------~i~lw~~~~~~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~D~------~v~iw~~~~   89 (330)
T 2hes_X           24 QG-ILATGSTDR------KIKLVSVKYDDFTLIDVL-DETAHKKAIRSVAWRPHTSLLAAGSFDS------TVSIWAKEE   89 (330)
T ss_dssp             TT-EEEEEESSS------CEEEEECSSSCCEEEEEE-CTTCCCSCEEEEEECTTSSEEEEEETTS------CEEEEEC--
T ss_pred             CC-EEEEEcCCC------EEEEEEecCCCeEEEEEE-ecCCccCCEEEEEECCCCCEEEEEeCCC------cEEEEEccc
Confidence            44 666666432      288888887655444321 00101112223333  456777776543      377777643


Q ss_pred             C-----eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC--CceEeeeecCCCCCCCcceEEE
Q 012184          140 M-----TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGI  212 (469)
Q Consensus       140 ~-----~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~  212 (469)
                      .     .+..+.....  ....-.++....++..++.|+.+     ..+.++|+..  ..+..+......   ......+
T Consensus        90 ~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h---~~~v~~v  159 (330)
T 2hes_X           90 SADRTFEMDLLAIIEG--HENEVKGVAWSNDGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEH---SQDVKHV  159 (330)
T ss_dssp             -----CCCEEEEEEC------CEEEEEECTTSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCC---SSCEEEE
T ss_pred             CcCccccceeEEEEcC--CCCcEEEEEECCCCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccC---CCceEEE
Confidence            2     1222211100  00111122222356677777655     3578888742  334443321111   1111222


Q ss_pred             EE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCC--cEEEEEeccCCC
Q 012184          213 TI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE--HHLVAFGGYNGK  282 (469)
Q Consensus       213 ~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~--~~l~v~GG~~~~  282 (469)
                      .+  ++.+++.|+.++     .+.++|+.+..|..+..+.+..      ..+..+...++  ..+++.|+.++.
T Consensus       160 ~~~p~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          160 IWHPSEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHE------GTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             EECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCS------SCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             EECCCCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCC------CcEEEEEecCCCCeeEEEEEeCCCe
Confidence            22  456777777543     4667777777776655443322      12222333332  456777776653

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.88  E-value=9.5  Score=30.77  Aligned_cols=18  Identities=17%  Similarity=0.309  Sum_probs=7.6

Q ss_pred             hhhHHHHHHHHHHHHHHh
Q 012184          388 HSELSKELSSVQGQLVAE  405 (469)
Q Consensus       388 ~~e~~~el~~~~~~l~~~  405 (469)
                      ......++..+..++..+
T Consensus        53 ~~~~~~e~~~L~~~l~~E   70 (154)
T 2ocy_A           53 LSDRDDEVKRLREDIAKE   70 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHH
Confidence            333444444444444444

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=87.87  E-value=2.8  Score=28.97  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          393 KELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       393 ~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      ..++.++.+++.+++++..++..+
T Consensus         7 ~kLq~~E~~N~~Le~~v~~le~~L   30 (72)
T 3cve_A            7 MKLQEVEIRNKDLEGQLSEMEQRL   30 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            334444444444444444444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=87.72  E-value=14  Score=33.39  Aligned_cols=105  Identities=9%  Similarity=0.042  Sum_probs=54.5

Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  155 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r  155 (469)
                      ...+++||+.++++..+. ....|     .+++.. ++ .||+...... ....+.+++|++..............+ ..
T Consensus       168 ~~~v~~~d~~~g~~~~~~-~~~~p-----~gl~~spdg~~lyv~~~~~~-~~~~~~i~~~~~~~~~l~~~~~~~~~~-~~  239 (305)
T 3dr2_A          168 HHSVYRLPPDGSPLQRMA-DLDHP-----NGLAFSPDEQTLYVSQTPEQ-GHGSVEITAFAWRDGALHDRRHFASVP-DG  239 (305)
T ss_dssp             CEEEEEECSSSCCCEEEE-EESSE-----EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCS-SS
T ss_pred             CCeEEEEcCCCCcEEEEe-cCCCC-----cceEEcCCCCEEEEEecCCc-CCCCCEEEEEEecCCCccCCeEEEECC-CC
Confidence            356999999888877664 11111     223322 33 5777643211 011357999998766532222111111 11


Q ss_pred             CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184          156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      .-..++...++.||+..+       +.|++|++.......+.
T Consensus       240 ~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             CCCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred             CCCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence            112344444666777542       35999999766555543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=87.64  E-value=3.5  Score=41.69  Aligned_cols=14  Identities=21%  Similarity=0.335  Sum_probs=6.0

Q ss_pred             hHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKS  441 (469)
Q Consensus       428 ~~e~e~~~~~q~~~  441 (469)
                      ++|+|.+++.++.+
T Consensus       534 kme~~~~~~~~e~~  547 (592)
T 1f5n_A          534 KMENDRVQLLKEQE  547 (592)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444443

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=87.58  E-value=2.3  Score=35.35  Aligned_cols=11  Identities=27%  Similarity=0.335  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 012184          430 ENEVQILRQQK  440 (469)
Q Consensus       430 e~e~~~~~q~~  440 (469)
                      .+|+.++++++
T Consensus       119 ~~Ei~~Lr~qL  129 (175)
T 3lay_A          119 AKEMESLGQKL  129 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=87.43  E-value=3.7  Score=29.71  Aligned_cols=14  Identities=14%  Similarity=0.328  Sum_probs=6.9

Q ss_pred             hHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKS  441 (469)
Q Consensus       428 ~~e~e~~~~~q~~~  441 (469)
                      .|+.|+.-.++-++
T Consensus        67 ~Le~EIatYRkLLE   80 (86)
T 1x8y_A           67 ALDMEIHAYRKLLE   80 (86)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHc
Confidence            45555555554443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=87.15  E-value=27  Score=35.21  Aligned_cols=108  Identities=11%  Similarity=0.148  Sum_probs=52.9

Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCC-Cc
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK-LA  242 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~-~~  242 (469)
                      ++.+++.|+.+     +.+.+||+.+.....+...+  ... .-.+++.. ++.+++.|+.+     ..+.+||+.+ ..
T Consensus       459 dg~~lasgs~D-----~~v~lwd~~~~~~~~~~~~~--h~~-~v~~v~fspdg~~las~s~d-----~~v~~w~~~~~~~  525 (611)
T 1nr0_A          459 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIV--HPA-EITSVAFSNNGAFLVATDQS-----RKVIPYSVANNFE  525 (611)
T ss_dssp             TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEE--CSS-CEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTTE
T ss_pred             CCCEEEEeCCC-----CeEEEEEccCCceeeeeccC--CCC-ceEEEEECCCCCEEEEEcCC-----CCEEEEEcCCCCc
Confidence            44455555533     35777777666554332111  111 11122222 45666666643     2467777765 22


Q ss_pred             EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          243 WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       243 W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                        .+....  .  ......+..+...+++.+++.|+.++.    +.++|+...
T Consensus       526 --~~~~~~--~--~~H~~~V~~v~fspdg~~lasgs~D~~----v~lW~~~~~  568 (611)
T 1nr0_A          526 --LAHTNS--W--TFHTAKVACVSWSPDNVRLATGSLDNS----VIVWNMNKP  568 (611)
T ss_dssp             --ESCCCC--C--CCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTCT
T ss_pred             --eeeeee--e--eecccceeEEEECCCCCEEEEEECCCc----EEEEECCCc
Confidence              111100  0  001122344455566778888887663    778887653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=87.08  E-value=15  Score=32.28  Aligned_cols=156  Identities=8%  Similarity=0.002  Sum_probs=84.9

Q ss_pred             eeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCc
Q 012184           56 HCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        56 ~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~  131 (469)
                      +.+++.  ++.||+.-..      .+.+.++|+....-..+...+ .  ... ..++.-  +++||+.....    ..+.
T Consensus        82 ~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~~-~--~~P-~~i~vd~~~g~lyv~~~~~----~~~~  147 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLFDTG-L--VNP-RGIVTDPVRGNLYWTDWNR----DNPK  147 (267)
T ss_dssp             EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSS-C--SSE-EEEEEETTTTEEEEEECCS----SSCE
T ss_pred             cEEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEEECC-C--CCc-cEEEEeeCCCEEEEEECCC----CCcE
Confidence            444443  6789987432      245899998755433343221 1  111 233333  57899875321    1456


Q ss_pred             EEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceE
Q 012184          132 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  210 (469)
Q Consensus       132 v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  210 (469)
                      ++++++....-..+.. ...   ..-..+++.. +++||+.-..     .+.|++||+.+..-..+...  ..   ..+.
T Consensus       148 I~~~~~dg~~~~~~~~-~~~---~~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~--~~---~P~g  213 (267)
T 1npe_A          148 IETSHMDGTNRRILAQ-DNL---GLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEG--LQ---YPFA  213 (267)
T ss_dssp             EEEEETTSCCCEEEEC-TTC---SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEEC--CC---SEEE
T ss_pred             EEEEecCCCCcEEEEE-CCC---CCCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecC--CC---CceE
Confidence            8899887544333321 111   1122334433 4688886532     36799999876433322211  11   2235


Q ss_pred             EEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          211 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       211 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      ++..++.+|+.-..     .+.+.++|+.+.+-.
T Consensus       214 i~~d~~~lyva~~~-----~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          214 VTSYGKNLYYTDWK-----TNSVIAMDLAISKEM  242 (267)
T ss_dssp             EEEETTEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred             EEEeCCEEEEEECC-----CCeEEEEeCCCCCce
Confidence            55568889987432     247899999876654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=87.04  E-value=14  Score=38.11  Aligned_cols=108  Identities=10%  Similarity=0.031  Sum_probs=53.8

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCC---CCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRS---RKLLNDVHFLDLETMTWDAVEVTQTPPAP  154 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~---~~~~~~v~~~d~~t~~W~~~~~~g~~p~~  154 (469)
                      .++.+|+.++.-..+......  .......+.+  +++.++++.....   ..+...++++|+.++....+..... ...
T Consensus        38 ~i~~~d~~~g~~~~~~~~~~~--~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~  114 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNA  114 (723)
T ss_dssp             CEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSC
T ss_pred             CEEEEECCCCcEEEEeccccc--cccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccc
Confidence            488888888875555421111  0001122223  4555555543221   1234789999999887655542111 001


Q ss_pred             CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184          155 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       155 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      ... .+..-.|++.++|+..      +.++++|+.++....+.
T Consensus       115 ~~~-~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A          115 KLQ-YAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             CCS-BCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEE
T ss_pred             ccc-ccEECCCCCEEEEEEC------CeEEEEECCCCceEEEe
Confidence            111 1111124444455432      47889998887766554

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=86.87  E-value=7.1  Score=31.20  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=14.9

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAER  406 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~  406 (469)
                      +...+++++..++..+.+..+-++.++.++..++
T Consensus        76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq  109 (152)
T 3a7p_A           76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGT  109 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444433

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=86.84  E-value=4.2  Score=36.41  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=15.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012184          419 LQKMLESSQTIENEVQILRQQKSAFEQEMER  449 (469)
Q Consensus       419 ~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~  449 (469)
                      .++.|....++..+..++.++++++++++++
T Consensus        71 mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ier  101 (302)
T 3ibp_A           71 LQQLLEREREAIVERDEVGARKNAVDEEIER  101 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444434444445555556666666654

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.76  E-value=2.1  Score=33.61  Aligned_cols=8  Identities=13%  Similarity=0.501  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q 012184          413 EAQIAELQ  420 (469)
Q Consensus       413 ~~~~~e~~  420 (469)
                      +.++++|.
T Consensus        73 e~ElE~LT   80 (135)
T 2e7s_A           73 NKEVEDLT   80 (135)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=86.68  E-value=27  Score=34.79  Aligned_cols=138  Identities=9%  Similarity=-0.072  Sum_probs=69.8

Q ss_pred             ceEEEEEC--CCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184           79 MIVRFIDL--ETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  155 (469)
Q Consensus        79 ~~~~~~d~--~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r  155 (469)
                      ..+|..++  .... ..+.   ..+..+  ..+...+ +.+++..+..      +.+.+||+.++....+...   +.  
T Consensus        90 ~~l~~~~~~~~g~~-~~l~---~~~~~~--~~~~s~dg~~~~~~s~~~------~~~~l~d~~~g~~~~l~~~---~~--  152 (582)
T 3o4h_A           90 HALFKVNTSRPGEE-QRLE---AVKPMR--ILSGVDTGEAVVFTGATE------DRVALYALDGGGLRELARL---PG--  152 (582)
T ss_dssp             EEEEEEETTSTTCC-EECT---TSCSBE--EEEEEECSSCEEEEEECS------SCEEEEEEETTEEEEEEEE---SS--
T ss_pred             eEEEEEeccCCCcc-cccc---CCCCce--eeeeCCCCCeEEEEecCC------CCceEEEccCCcEEEeecC---CC--
Confidence            35777887  4333 2332   112111  2233344 4555554432      2244789888887776531   11  


Q ss_pred             CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEE
Q 012184          156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETI  234 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~  234 (469)
                        .....-.|++.+++++.+.. ....++++|+.+..+..+..   .+  ......+.. +++.++.+..+   ....++
T Consensus       153 --~~~~~spDG~~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~---~~--~~~~~~~~SpDG~~l~~~~~~---~~~~i~  221 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGG-GRVSLFTSNLSSGGLRVFDS---GE--GSFSSASISPGMKVTAGLETA---REARLV  221 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEET-TEEEEEEEETTTCCCEEECC---SS--CEEEEEEECTTSCEEEEEECS---SCEEEE
T ss_pred             --ceEEECCCCCEEEEEEEcCC-CCeEEEEEcCCCCCceEeec---CC--CccccceECCCCCEEEEccCC---CeeEEE
Confidence              23332235545555543322 12459999999998876631   11  111222222 44544433321   235788


Q ss_pred             EEECCCCcEE
Q 012184          235 VLNMTKLAWS  244 (469)
Q Consensus       235 ~~d~~~~~W~  244 (469)
                      ++|+.+....
T Consensus       222 ~~d~~~~~~~  231 (582)
T 3o4h_A          222 TVDPRDGSVE  231 (582)
T ss_dssp             EECTTTCCEE
T ss_pred             EEcCCCCcEE
Confidence            9998887766

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=86.53  E-value=3.2  Score=30.22  Aligned_cols=15  Identities=20%  Similarity=0.308  Sum_probs=5.5

Q ss_pred             hcchhhHHHHHHHHH
Q 012184          385 NSTHSELSKELSSVQ  399 (469)
Q Consensus       385 ~~~~~e~~~el~~~~  399 (469)
                      +..+..++.++..++
T Consensus        28 e~~Ie~LE~~i~~le   42 (89)
T 2lw1_A           28 PQLLEDLEAKLEALQ   42 (89)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=86.52  E-value=2.6  Score=34.93  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=18.9

Q ss_pred             HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      +++++.....++++..|...+.++++....++..|+++++.++.+.
T Consensus        12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~   57 (190)
T 4emc_A           12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV   57 (190)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344444444555555555555555544444455555544444443

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*

Probab=86.40  E-value=17  Score=39.73  Aligned_cols=191  Identities=11%  Similarity=0.130  Sum_probs=105.0

Q ss_pred             CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEE-EeeeC-CCCCCCCCCceEEEEc--CcEEEEEecCCCCcc
Q 012184          104 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVT-QTPPAPRYDHSAALHA--NRYLIVFGGCSHSIF  179 (469)
Q Consensus       104 r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~-~~~~~-g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~  179 (469)
                      -.++++....+.+ ++|..+... +...++.|+.....|. ..... +.......++++++..  +...||+|--. ...
T Consensus       334 q~GfSa~~t~d~~-~~GapG~~~-w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~-~~~  410 (1095)
T 3k6s_A          334 QEGFSAVFTPDGP-VLGAVGSFT-WSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR-YQH  410 (1095)
T ss_dssp             CTTSSEECCTTCC-EEEESCSTT-TTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT-GGG
T ss_pred             cccccceecCCcc-eEcccccCC-ccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc-ccc
Confidence            3455666555555 788665433 4566888876654432 22111 1222233466665422  23356666432 233


Q ss_pred             cCcEEEEECCCCceEeeee-cCCCCCCCcceEEEEEC------CEEEEEecCC--CCCCcceEEEEECCC--CcEEEecc
Q 012184          180 FNDLHVLDLQTNEWSQPEI-KGDLVTGRAGHAGITID------ENWYIVGGGD--NNNGCQETIVLNMTK--LAWSILTS  248 (469)
Q Consensus       180 ~~~i~~~d~~~~~W~~~~~-~~~~p~~r~~~~~~~~~------~~l~v~GG~~--~~~~~~d~~~~d~~~--~~W~~~~~  248 (469)
                      ...+++|......|..... .+.....+.+++++..+      ..++++|.-.  .......+++|....  ..|.....
T Consensus       411 ~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~  490 (1095)
T 3k6s_A          411 TGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAV  490 (1095)
T ss_dssp             TCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSS
T ss_pred             cceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEE
Confidence            5679999988888987543 44445557777777652      3577777421  112234688886543  45765444


Q ss_pred             CCCCC--CCCCCCcceEEE-EEcCC--cEEEEEeccCCCCCceEEEEECCCC-CC
Q 012184          249 VKGRN--PLASEGLSVCSA-IIEGE--HHLVAFGGYNGKYNNEVFVMRLKPR-DI  297 (469)
Q Consensus       249 ~~~~~--p~~r~~~s~~~~-~~~~~--~~l~v~GG~~~~~~~~~~~~d~~~~-~w  297 (469)
                      +.+..  +..|+|++++.+ =++++  .-|+|...........+|+|.-... .|
T Consensus       491 l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl~VGAP~~~~~~G~vyi~~g~~~~g~  545 (1095)
T 3k6s_A          491 LYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSI  545 (1095)
T ss_dssp             CCCCCSCSSCCBTSCEEEEECSSSSSCCEEEEECTTTTTSCCBEEEEEBCSSSCB
T ss_pred             eecccCCccccCccceEeecccCCCCCcCEEEeCCcCCCCCCEEEEecCCCCCCc
Confidence            43332  356788887763 23332  3455443333334567899887655 44

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=86.39  E-value=12  Score=35.30  Aligned_cols=158  Identities=9%  Similarity=0.127  Sum_probs=80.4

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeE--EEeecCC-CCCCCCcceEEEE-ECCEEEEEeccCCCCCccCc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETSG-KVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~g-~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~  131 (469)
                      -+++..++++|+|=|.        .+|+++.....-  ..+...- .+| .....+... .++++|+|-|.        .
T Consensus       184 DAv~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP-~~iDAa~~~~~~g~~~fFkg~--------~  246 (365)
T 3ba0_A          184 DAVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLP-SGIEAAYEIEARNQVFLFKDD--------K  246 (365)
T ss_dssp             SCEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCC-SSCCEEEEEGGGTEEEEEETT--------E
T ss_pred             eeEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCC-CCccEEEEecCCCEEEEEeCC--------E
Confidence            4556679999999652        267776543221  1111110 123 222222222 26899999652        3


Q ss_pred             EEEEECCCCe--E-EEeeeCCCCCCC-CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeec-CCC-
Q 012184          132 VHFLDLETMT--W-DAVEVTQTPPAP-RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK-GDL-  202 (469)
Q Consensus       132 v~~~d~~t~~--W-~~~~~~g~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~-~~~-  202 (469)
                      +|+|+.....  + +.+...| +|.. ..--++... .++++|+|-|       +..|+||..+.+-..  +... ... 
T Consensus       247 yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~  318 (365)
T 3ba0_A          247 YWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQ  318 (365)
T ss_dssp             EEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHST
T ss_pred             EEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCC
Confidence            5666533211  1 1121111 2321 122233333 3578999987       678999987654322  1000 001 


Q ss_pred             CCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          203 VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       203 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      ..+..-.++... ++++|+|=|       +..|+||..+..-..
T Consensus       319 g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~  355 (365)
T 3ba0_A          319 GIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK  355 (365)
T ss_dssp             TCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             CCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence            112222344445 789999977       378999998876554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=86.08  E-value=20  Score=32.76  Aligned_cols=193  Identities=12%  Similarity=0.045  Sum_probs=93.9

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcc---eEEEEECCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG---HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~---~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ++.+++.||.++      .+..||+.+++-...-..+. ......   ...+..++.+.++-.       .+.+..||+.
T Consensus        47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~s~s~D~~i~~w~~-------~~~~~~~~~~  112 (343)
T 3lrv_A           47 DKWVCMCRCEDG------ALHFTQLKDSKTITTITTPN-PRTGGEHPAIISRGPCNRLLLLYP-------GNQITILDSK  112 (343)
T ss_dssp             EEEEEEEEEETT------EEEEEEESSSSCEEEEEEEC-CCTTCCCCSEEEECSTTEEEEEET-------TTEEEEEETT
T ss_pred             CCCEEEEECCCC------cEEEEECCCCcEEEEEecCC-ceeeeeCCceEEecCCCeEEEEEc-------cCceEEeecC
Confidence            567777777543      27788877665322111111 111111   112222445555422       3356778877


Q ss_pred             CCeE-EEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-
Q 012184          139 TMTW-DAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-  214 (469)
Q Consensus       139 t~~W-~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-  214 (469)
                      +..- ..... +   ....-.++....  ++.+++.|+.+     ..+.+||+.+..-..... .  .......+++.. 
T Consensus       113 ~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~-~--~~~~~i~~~~~~p  180 (343)
T 3lrv_A          113 TNKVLREIEV-D---SANEIIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDSQYIVHS-A--KSDVEYSSGVLHK  180 (343)
T ss_dssp             TCCEEEEEEC-C---CSSCEEEEECCC---CCEEEEEETT-----CCEEEEESSSSCEEEEEC-C--CSSCCCCEEEECT
T ss_pred             CcceeEEeec-C---CCCCEEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEe-c--CCCCceEEEEECC
Confidence            7763 23221 1   111112222222  45567777754     358899998776543321 1  111112233333 


Q ss_pred             CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      ++.+++.|+.+     ..+.+||+.+..-.. ..+..     .....+..+...+++.+++.|+ ++    .+.+||+.+
T Consensus       181 dg~~lasg~~d-----g~i~iwd~~~~~~~~-~~~~~-----~h~~~v~~l~fs~~g~~l~s~~-~~----~v~iwd~~~  244 (343)
T 3lrv_A          181 DSLLLALYSPD-----GILDVYNLSSPDQAS-SRFPV-----DEEAKIKEVKFADNGYWMVVEC-DQ----TVVCFDLRK  244 (343)
T ss_dssp             TSCEEEEECTT-----SCEEEEESSCTTSCC-EECCC-----CTTSCEEEEEECTTSSEEEEEE-SS----BEEEEETTS
T ss_pred             CCCEEEEEcCC-----CEEEEEECCCCCCCc-cEEec-----cCCCCEEEEEEeCCCCEEEEEe-CC----eEEEEEcCC
Confidence            45677777743     258889988765320 01111     0112333444555566777776 32    588999876


Q ss_pred             CC
Q 012184          295 RD  296 (469)
Q Consensus       295 ~~  296 (469)
                      ..
T Consensus       245 ~~  246 (343)
T 3lrv_A          245 DV  246 (343)
T ss_dssp             ST
T ss_pred             CC
Confidence            53

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=86.08  E-value=18  Score=32.25  Aligned_cols=175  Identities=6%  Similarity=0.006  Sum_probs=88.1

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .+..+|+.+++  |+.-...                . ....+..+..+++||+.+        .+.++.||+ +++  |
T Consensus        16 ~v~~~d~~tG~~~w~~~~~~----------------~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W   69 (276)
T 3no2_A           16 KIAIINKDTKEIVWEYPLEK----------------G-WECNSVAATKAGEILFSY--------SKGAKMITR-DGRELW   69 (276)
T ss_dssp             EEEEEETTTTEEEEEEECCT----------------T-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEE
T ss_pred             EEEEEECCCCeEEEEeCCCc----------------c-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEE
Confidence            78899998875  6543321                0 122233333477788842        134999999 554  6


Q ss_pred             EEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCC-CCCceEEEEcCcEE
Q 012184           92 GVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP-RYDHSAALHANRYL  168 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~-r~~~~~~~~~~~~l  168 (469)
                      +--.     +....-+++... ++.+++.....     ...++.+|+.... |+... .+..+.+ ...+.+....++.+
T Consensus        70 ~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           70 NIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQINKNKKGNY  138 (276)
T ss_dssp             EEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCEECTTSCE
T ss_pred             EEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEec-cCCCCcccccccCceECCCCCE
Confidence            5432     111122333433 45555543321     2357888875442 44322 1111111 11112233335545


Q ss_pred             EEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCC--cE
Q 012184          169 IVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKL--AW  243 (469)
Q Consensus       169 ~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W  243 (469)
                      ++....     .+.+.+||++ ++  |+.-.  +     ...+++... ++.++|.+..+     ..+..||+.+.  .|
T Consensus       139 lv~~~~-----~~~v~~~d~~-G~~~w~~~~--~-----~~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          139 LVPLFA-----TSEVREIAPN-GQLLNSVKL--S-----GTPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVR  200 (276)
T ss_dssp             EEEETT-----TTEEEEECTT-SCEEEEEEC--S-----SCCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEE
T ss_pred             EEEecC-----CCEEEEECCC-CCEEEEEEC--C-----CCccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEE
Confidence            554432     2468999987 43  66421  1     112334444 56777776532     35889998854  46


Q ss_pred             EE
Q 012184          244 SI  245 (469)
Q Consensus       244 ~~  245 (469)
                      +.
T Consensus       201 ~~  202 (276)
T 3no2_A          201 RV  202 (276)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=86.01  E-value=8.6  Score=28.39  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=13.9

Q ss_pred             HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184          378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  413 (469)
Q Consensus       378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~  413 (469)
                      ..++..++....++-++|..++.+-..+...+..++
T Consensus        10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le   45 (96)
T 3q8t_A           10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQ   45 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            333344333333344444444333333333333333

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=85.66  E-value=2.7  Score=30.54  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=32.0

Q ss_pred             hhhhhhhhhhhhhHhhhhhhhcchh-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184          365 LSLTEVRTENSRFREKIDEVNSTHS-ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  441 (469)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~~~~~-e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~  441 (469)
                      +.+...+.+...+.++....+.... +.+..+.+--.+++..+..+.+|+...      ....++.|+|+..|+.+++
T Consensus        14 ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h------~kmKq~YEeEI~rLr~eLe   85 (92)
T 3vp9_A           14 ELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTH------RKMKDAYEEEIKHLKLGLE   85 (92)
T ss_dssp             ---CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence            3444445555555444444433332 444444444444444444554444332      2333456666666555554

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=85.61  E-value=2.2  Score=31.67  Aligned_cols=28  Identities=29%  Similarity=0.465  Sum_probs=12.6

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQL  402 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l  402 (469)
                      ..++++++.++.+...+++++..++.++
T Consensus        15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~L   42 (100)
T 1go4_E           15 DTLRLKVEELEGERSRLEEEKRMLEAQL   42 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=85.45  E-value=1.5  Score=24.90  Aligned_cols=30  Identities=20%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184          425 SSQTIENEVQILRQQKSAFEQEMERATSVQ  454 (469)
Q Consensus       425 ~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q  454 (469)
                      .+.+||..++++.++++.++.+.++++...
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll   31 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV   31 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            355777788888888888888877766543

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=85.42  E-value=1.4  Score=24.98  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184          426 SQTIENEVQILRQQKSAFEQEMERATSVQT  455 (469)
Q Consensus       426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~  455 (469)
                      +.+||.+++++.++...++.|..+++....
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~   31 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKKLVG   31 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            457788888888888888888887766543

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.19  E-value=7.5  Score=29.27  Aligned_cols=8  Identities=50%  Similarity=0.605  Sum_probs=3.0

Q ss_pred             Hhhhhhhh
Q 012184          363 LELSLTEV  370 (469)
Q Consensus       363 ~~~~~~~~  370 (469)
                      ++..|.+.
T Consensus        30 Lq~qLTqA   37 (121)
T 3mq7_A           30 LQQELTEA   37 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=84.97  E-value=8  Score=31.10  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=15.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184          428 TIENEVQILRQQKSAFEQEMERATSV  453 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~~~~~~  453 (469)
                      +.++|.+++.+++.++..++++.+.+
T Consensus        81 q~~~ek~~r~e~k~~l~~ql~qv~~L  106 (150)
T 4dci_A           81 QVAGKRSELEEQKRNLLQQQAQVREL  106 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45566666666666666666555443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=84.92  E-value=30  Score=35.89  Aligned_cols=18  Identities=17%  Similarity=0.038  Sum_probs=13.8

Q ss_pred             cceEEEEECCCCeEEEee
Q 012184           78 SMIVRFIDLETNLCGVME   95 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~   95 (469)
                      ..+++.||+.++....+.
T Consensus        91 ~~~~~~~d~~~~~~~~l~  108 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITEE  108 (740)
T ss_dssp             EEEEEEEETTTTEECCSS
T ss_pred             ceEEEEEECCCCcEEEcc
Confidence            356899999999866554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=84.89  E-value=28  Score=36.00  Aligned_cols=149  Identities=9%  Similarity=0.033  Sum_probs=75.3

Q ss_pred             ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCC
Q 012184          112 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT  190 (469)
Q Consensus       112 ~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~  190 (469)
                      .++.||+.-.      ..+.|+++++....-..+... .+..|+   .+++. .++.||+..- .   ....|+++++..
T Consensus       463 ~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~td~-~---~~~~I~~~~~dG  528 (699)
T 1n7d_A          463 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWTDW-G---TPAKIKKGGLNG  528 (699)
T ss_dssp             SSSBCEECCT------TTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEECCC-S---SSCCEEBCCSSS
T ss_pred             eCCcEEEEec------cCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEccc-C---CCCeEEEEeCCC
Confidence            3578888521      245689999887654444321 122232   23332 2466776431 1   125688888765


Q ss_pred             CceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEc
Q 012184          191 NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE  268 (469)
Q Consensus       191 ~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~  268 (469)
                      ..-..+. ...+.   ...++++-  ++.||+.-..     .+.|+++|+....-..+.......   ...+++.+.   
T Consensus       529 ~~~~~l~-~~~l~---~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~---~~P~glavd---  593 (699)
T 1n7d_A          529 VDIYSLV-TENIQ---WPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRL---AHPFSLAVF---  593 (699)
T ss_dssp             CCCCEES-CSSCS---SCCCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSC---SSCCCCEEE---
T ss_pred             CCeeEEE-eCCCC---CccEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcC---CCceEeEEE---
Confidence            4333321 11111   12233332  4678887432     357889998754444443221111   122344433   


Q ss_pred             CCcEEEEEeccCCCCCceEEEEECCC
Q 012184          269 GEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       269 ~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                       .+.||+.-..    ...|.+++..+
T Consensus       594 -~~~lywtd~~----~~~V~~~d~~~  614 (699)
T 1n7d_A          594 -EDKVFWTDII----NEAIFSANRLT  614 (699)
T ss_dssp             -TTEEEEECST----TTCEEEEETTT
T ss_pred             -CCEEEEEeCC----CCeEEEEEccC
Confidence             4678877532    33578887643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=84.62  E-value=23  Score=32.17  Aligned_cols=144  Identities=17%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCE-EEEEeccC-C--------------CC-----CccCcEEE
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSR-LIIFGGED-R--------------SR-----KLLNDVHF  134 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-lyi~GG~~-~--------------~~-----~~~~~v~~  134 (469)
                      ...+|.+|+.++....+...   +.    .....+  +++ |++..... .              .+     .....+++
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~---~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEA---KN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI  156 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE---SE----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred             cceEEEEECCCCceEEEEcC---CC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence            34599999999887777632   21    222333  444 44443110 0              00     01356999


Q ss_pred             EECCCCeE-EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc---c-cCcEEEEECCCCceEeeeecCCCCCCCcce
Q 012184          135 LDLETMTW-DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---F-FNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  209 (469)
Q Consensus       135 ~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~-~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  209 (469)
                      +|+.++.. ..+..    +   .........++ +++.+......   . ...+|.+|  +..+..+...      ....
T Consensus       157 ~d~~~~~~~~~l~~----~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~------~~~~  220 (347)
T 2gop_A          157 FDTESEEVIEEFEK----P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK------VSFY  220 (347)
T ss_dssp             EETTTTEEEEEEEE----E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE------ESEE
T ss_pred             EECCCCeEEeeecC----C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC------ccee
Confidence            99999887 66542    2   22334444466 55555433221   2 45788888  6677665421      1111


Q ss_pred             EEEEECCEEEEEecCCC---CCCcceEEEEECCCCcEEEec
Q 012184          210 AGITIDENWYIVGGGDN---NNGCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       210 ~~~~~~~~l~v~GG~~~---~~~~~d~~~~d~~~~~W~~~~  247 (469)
                      .. .-+++.+++.+...   ......++++|  +..+..+.
T Consensus       221 ~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~  258 (347)
T 2gop_A          221 AV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL  258 (347)
T ss_dssp             EE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred             eE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence            22 33555444444222   11245799999  55666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=84.58  E-value=23  Score=32.13  Aligned_cols=139  Identities=14%  Similarity=-0.063  Sum_probs=71.0

Q ss_pred             ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCccCcEEEEECCC---CeEEEeeeCCCCCC
Q 012184           79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET---MTWDAVEVTQTPPA  153 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~~d~~t---~~W~~~~~~g~~p~  153 (469)
                      ..+++||+.++....+......|     ..++.- + +.||+.-.      ..+.|++|++.+   .....+..   .+.
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p-----~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~---~~g  230 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVP-----GGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVK---IPN  230 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCC-----CEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEE---CSS
T ss_pred             ceEEEEeCCCCEEEEeccCCccC-----cceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEe---CCC
Confidence            56999999988876554211112     223332 2 35777632      245699999875   34443331   121


Q ss_pred             CCCCceEEEEcCcEEEEEecCCCC-----cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184          154 PRYDHSAALHANRYLIVFGGCSHS-----IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN  228 (469)
Q Consensus       154 ~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  228 (469)
                         -..++...++.|||.......     ...+.+.+||+....-..+......+ .....+++..++.|||....    
T Consensus       231 ---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~----  302 (322)
T 2fp8_A          231 ---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLF----  302 (322)
T ss_dssp             ---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSS----
T ss_pred             ---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecC----
Confidence               233444446678886532110     11356899998654444443211111 12222344457888876432    


Q ss_pred             CcceEEEEECCC
Q 012184          229 GCQETIVLNMTK  240 (469)
Q Consensus       229 ~~~d~~~~d~~~  240 (469)
                       .+.+.+|++..
T Consensus       303 -~~~i~~~~~~~  313 (322)
T 2fp8_A          303 -HGSVGILVYDK  313 (322)
T ss_dssp             -CSEEEEEEC--
T ss_pred             -CCceEEEeccc
Confidence             24577887654

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=84.49  E-value=1.6  Score=24.75  Aligned_cols=29  Identities=17%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184          425 SSQTIENEVQILRQQKSAFEQEMERATSV  453 (469)
Q Consensus       425 ~~~~~e~e~~~~~q~~~~~~~~~~~~~~~  453 (469)
                      .+.+||..++++.+++..++.|..+++..
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l   30 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXKL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            35677778888888888888887766554

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=84.33  E-value=18  Score=30.62  Aligned_cols=149  Identities=11%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             EEEEECCEEEEEeccCCCCCccCcEEEEECCCC--eEEEeeeC---CCCCCCCCCceEEEE-cCcEEEEEecCCCCcccC
Q 012184          108 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVT---QTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFN  181 (469)
Q Consensus       108 ~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~--~W~~~~~~---g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~  181 (469)
                      +++.+++++|+|=|.        .+|+++....  ...-....   ..+|...  -++... .++++|+|-|       +
T Consensus        11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I--DAa~~~~~~~~~yfFkG-------~   73 (195)
T 1itv_A           11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRKL--DSVFEEPLSKKLFFFSG-------R   73 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSSC--SEEEECTTTCCEEEEET-------T
T ss_pred             EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCCc--cEEEEECCCCeEEEEeC-------C
Confidence            345578999999553        3677765442  22111111   1334321  223222 2577999988       5


Q ss_pred             cEEEEECCCCceEeeeecCC--CCC--CCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE-----Eec-cCCC
Q 012184          182 DLHVLDLQTNEWSQPEIKGD--LVT--GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS-----ILT-SVKG  251 (469)
Q Consensus       182 ~i~~~d~~~~~W~~~~~~~~--~p~--~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~-----~~~-~~~~  251 (469)
                      ..|+|+..+..  .+.....  +|.  .....+....++++|+|-|       +..|+||..+..-.     .+. .-++
T Consensus        74 ~yw~~~~~~~~--~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~G  144 (195)
T 1itv_A           74 QVWVYTGASVL--GPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPG  144 (195)
T ss_dssp             EEEEEETTEEE--EEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred             EEEEEcCCccC--CCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCC
Confidence            68888854321  1221111  222  1333333323578999977       37899998765321     111 1111


Q ss_pred             CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                       .|  ..-.++..  .  .+.+|.|-|.      ..|.||....
T Consensus       145 -vp--~~idaa~~--~--~g~~Yffkg~------~y~~~~~~~~  175 (195)
T 1itv_A          145 -VP--LDTHDVFQ--F--REKAYFCQDR------FYWRVSSRSE  175 (195)
T ss_dssp             -SC--SSCSEEEE--E--TTEEEEEETT------EEEEEECCTT
T ss_pred             -CC--CCCCEEEE--e--CCeEEEEeCC------EEEEEECCcc
Confidence             11  11122222  2  3678888762      5788887654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=84.27  E-value=26  Score=32.45  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=19.0

Q ss_pred             ceEEEEcCc-EEEEEecCCCCcccCcEEEEECC-CCceEee
Q 012184          158 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQP  196 (469)
Q Consensus       158 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~  196 (469)
                      +.++...++ ++|+.. ..    .+.+++||+. +++...+
T Consensus       148 ~~~~~spdG~~l~~~~-~~----~~~v~~~~~~~~g~~~~~  183 (365)
T 1jof_A          148 HGMVFDPTETYLYSAD-LT----ANKLWTHRKLASGEVELV  183 (365)
T ss_dssp             EEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSCEEEE
T ss_pred             eEEEECCCCCEEEEEc-CC----CCEEEEEEECCCCCEEEe
Confidence            344443344 565542 21    2579999987 6766543

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=84.13  E-value=1.9  Score=27.92  Aligned_cols=30  Identities=10%  Similarity=0.143  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184          395 LSSVQGQLVAERSRCFKLEAQIAELQKMLE  424 (469)
Q Consensus       395 l~~~~~~l~~~~~~~~~~~~~~~e~~~~l~  424 (469)
                      ...++.+++.++.++..|..+++|+..++.
T Consensus        21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           21 IELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444445555555555555555555443

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=84.03  E-value=8.6  Score=29.21  Aligned_cols=17  Identities=12%  Similarity=0.282  Sum_probs=6.6

Q ss_pred             chhhHHHHHHHHHHHHH
Q 012184          387 THSELSKELSSVQGQLV  403 (469)
Q Consensus       387 ~~~e~~~el~~~~~~l~  403 (469)
                      ...+++.++.+++..+.
T Consensus        25 ~~~~l~~~i~~l~~~l~   41 (112)
T 1l8d_A           25 RIGELKNKIGDLKTAIE   41 (112)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333334444433333

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=83.98  E-value=38  Score=34.09  Aligned_cols=180  Identities=8%  Similarity=-0.041  Sum_probs=89.4

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCC---CCCC
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP---PAPR  155 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~---p~~r  155 (469)
                      +..||..+.+....-     ......-.++.+  ++.+++.||.+.      .+.++|+.++.....-.....   ....
T Consensus       172 v~lwd~~~~~~~~~l-----~~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~~~~~~~~~~~~~~h~~  240 (611)
T 1nr0_A          172 VAIFEGPPFKFKSTF-----GEHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKTGVFEDDSLKNVAHSG  240 (611)
T ss_dssp             EEEEETTTBEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred             EEEEECCCCeEeeee-----ccccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcEeeeeccccccccccCC
Confidence            777777665543221     111112223333  456777777543      388899887765433211100   0011


Q ss_pred             CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEE
Q 012184          156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIV  235 (469)
Q Consensus       156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~  235 (469)
                      .-.+++...++..++.|+.+     +.+.++|+.+.+....-..+.  ........+..++..++.++.++     .+..
T Consensus       241 ~V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~-----~i~~  308 (611)
T 1nr0_A          241 SVFGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISANG-----FINF  308 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETTC-----CEEE
T ss_pred             CEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceeeeecCCC--CccceeEEEEEcCCEEEEEeCCC-----cEEE
Confidence            11122333356677777754     458899998877654221111  11111222333566666666432     4667


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          236 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       236 ~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +|+....-..  .+.+..      ..+..+...+++..++.|+.++    .+.++|+.+.
T Consensus       309 ~~~~~~~~~~--~~~gh~------~~v~~l~~spdg~~l~s~s~D~----~v~~Wd~~~~  356 (611)
T 1nr0_A          309 VNPELGSIDQ--VRYGHN------KAITALSSSADGKTLFSADAEG----HINSWDISTG  356 (611)
T ss_dssp             EETTTTEEEE--EECCCS------SCEEEEEECTTSSEEEEEETTS----CEEEEETTTC
T ss_pred             EeCCCCCcce--EEcCCC------CCEEEEEEeCCCCEEEEEeCCC----cEEEEECCCC
Confidence            7877654222  111111      1233444555666777777665    3677777654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=83.80  E-value=30  Score=32.74  Aligned_cols=109  Identities=13%  Similarity=0.045  Sum_probs=57.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.+      ..+..||+.+..-...-   ..+.......++.+  ++.+++.|+.+.      .+.+||+.+
T Consensus       181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNL------SRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETT------SEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence            46677777643      24899999887643332   11111222333334  456777776543      488999988


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEE---E-cCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAAL---H-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  193 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~---~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  193 (469)
                      ......-..   +....-.+++.   + .++.+++.|+.+     ..+.+||+.+..-
T Consensus       246 ~~~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~  295 (437)
T 3gre_A          246 NVLIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHC  295 (437)
T ss_dssp             TEEEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEE
T ss_pred             ccEEEEEec---CCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcE
Confidence            765432210   11100111111   1 145456665543     3588889877653

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=83.69  E-value=8.2  Score=29.51  Aligned_cols=20  Identities=10%  Similarity=0.300  Sum_probs=9.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEM  447 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~  447 (469)
                      .++++++.++.++..++..+
T Consensus        88 ~le~~~~~l~~~l~~lk~~l  107 (117)
T 2zqm_A           88 ALERQEKKLNEKLKELTAQI  107 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=83.55  E-value=18  Score=35.00  Aligned_cols=71  Identities=10%  Similarity=0.185  Sum_probs=30.9

Q ss_pred             HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184          378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFK-LEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~-~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      +..+++.+..+.+++.|.+.+++.....+..... +.+-.++|.+=.+..-+.+.++...++.+.+...++.
T Consensus        33 e~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~la  104 (497)
T 3iox_A           33 EAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALA  104 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555444333211 1111112211122222444555556666665555554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=83.17  E-value=27  Score=31.81  Aligned_cols=157  Identities=12%  Similarity=0.058  Sum_probs=83.1

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCC----CCCCc-ceEEEEE-C-CEEEEEeccCCCCCccCcEEE
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV----PVARG-GHSVTLV-G-SRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~----p~~r~-~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      ++.||+..++.     ...+.+||+....-..+...|..    +.... -++++.- + +.||+....      .+.|.+
T Consensus       154 ~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~  222 (329)
T 3fvz_A          154 TGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQC  222 (329)
T ss_dssp             TCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEE
T ss_pred             CCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEE
Confidence            68899997532     23489999654444444332221    11111 2333333 3 789987532      456999


Q ss_pred             EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCCceEeeeecCCCCC-CCcceEE
Q 012184          135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAG  211 (469)
Q Consensus       135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~  211 (469)
                      ||+.+++....-...  .....-++++.. .+.+|+..|...  ....+.+.++|+.+++....-  +..+. ....+.+
T Consensus       223 ~~~~~G~~~~~~~~~--~~~~~~~~~~~~-pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~--~~~~~~~~~p~~i  297 (329)
T 3fvz_A          223 FKTDTKEFVREIKHA--SFGRNVFAISYI-PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF--KPVRKHFDMPHDI  297 (329)
T ss_dssp             EETTTCCEEEEECCT--TTTTCEEEEEEE-TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE--CCSSSCCSSEEEE
T ss_pred             EECCCCcEEEEEecc--ccCCCcceeeec-CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE--cCCCCccCCeeEE
Confidence            999877765433111  111222233333 366777776422  223457999998888765432  11111 1222333


Q ss_pred             EEE-CCEEEEEecCCCCCCcceEEEEECC
Q 012184          212 ITI-DENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       212 ~~~-~~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      +.. ++.+||....     .+.+++|++.
T Consensus       298 a~~~dG~lyvad~~-----~~~I~~~~~~  321 (329)
T 3fvz_A          298 VASEDGTVYIGDAH-----TNTVWKFTLT  321 (329)
T ss_dssp             EECTTSEEEEEESS-----SCCEEEEEEE
T ss_pred             EECCCCCEEEEECC-----CCEEEEEeCC
Confidence            333 4578887653     2367777764

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=83.01  E-value=2.7  Score=26.26  Aligned_cols=42  Identities=12%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184          375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~  416 (469)
                      .+|-++++.++.++.-+++|++..-.++.+++.....++.-+
T Consensus         6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl   47 (54)
T 1deb_A            6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL   47 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence            345556666666677777777777777766666665555444

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=82.96  E-value=7.8  Score=34.67  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 012184          428 TIENEVQILRQQKSAFEQEMERATSVQTQGSGG  460 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~  460 (469)
                      ..|+++...+.++...+++++++-++..|-.|+
T Consensus        76 e~Ere~~~~Rd~~a~~k~~Le~~ierLs~pgg~  108 (302)
T 3ibp_A           76 EREREAIVERDEVGARKNAVDEEIERLSQPGGS  108 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            444556666666666677776665555554443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=82.86  E-value=13  Score=28.05  Aligned_cols=51  Identities=8%  Similarity=0.104  Sum_probs=26.6

Q ss_pred             hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184          373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ....|+.++..+.....++...+.++++.+--+.....-....+++++.++
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~   86 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRL   86 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHH
Confidence            445556666555555555555555555554444444444444555555554

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=82.83  E-value=0.65  Score=46.99  Aligned_cols=7  Identities=14%  Similarity=0.496  Sum_probs=3.4

Q ss_pred             HHHHHHh
Q 012184          353 IDAIKED  359 (469)
Q Consensus       353 ~~~l~~~  359 (469)
                      +++++.+
T Consensus       302 ~qqm~~~  308 (575)
T 2i1j_A          302 VQQMKAQ  308 (575)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=82.82  E-value=8.8  Score=37.61  Aligned_cols=20  Identities=15%  Similarity=0.358  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 012184          431 NEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       431 ~e~~~~~q~~~~~~~~~~~~  450 (469)
                      +.++++.-+...++++++++
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~  462 (471)
T 3mq9_A          443 KKVEELEGEITTLNHKLQDA  462 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.78  E-value=12  Score=36.79  Aligned_cols=21  Identities=0%  Similarity=-0.069  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 012184          428 TIENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       428 ~~e~e~~~~~q~~~~~~~~~~  448 (469)
                      .++++++++..+++...+.+.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~  473 (487)
T 3oja_A          453 RLKKLNGEADLALASANATLQ  473 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHhcccHHH
Confidence            455666666665555444443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=82.71  E-value=31  Score=32.07  Aligned_cols=150  Identities=11%  Similarity=0.053  Sum_probs=74.1

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++++++.|+.       +.+..++..++......+.   .........+.  -++..++.++.+...  ...++.+|...
T Consensus       187 dg~~l~s~s~-------~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~  254 (365)
T 4h5i_A          187 DGKVVAYITG-------SSLEVISTVTGSCIARKTD---FDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKS  254 (365)
T ss_dssp             TSSEEEEECS-------SCEEEEETTTCCEEEEECC---CCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEET
T ss_pred             CCceEEeccc-------eeEEEEEeccCcceeeeec---CCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeeccccc
Confidence            5566666542       1277788877765544321   11111122222  367777777655432  22466677766


Q ss_pred             CeEEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc-eEEEEE--C
Q 012184          140 MTWDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG-HAGITI--D  215 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~--~  215 (469)
                      ......... ..... ..-.+++.-.++.+++.|+.+     +.|.+||+.+.+-....     ..+... -..+.+  +
T Consensus       255 ~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D-----~~V~iwd~~~~~~~~~~-----~~gH~~~V~~v~fSpd  323 (365)
T 4h5i_A          255 GNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASND-----NSIALVKLKDLSMSKIF-----KQAHSFAITEVTISPD  323 (365)
T ss_dssp             TEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTEEEEEE-----TTSSSSCEEEEEECTT
T ss_pred             ceecceeee-eecCCCCCeEeEEECCCCCceEEEcCC-----CEEEEEECCCCcEEEEe-----cCcccCCEEEEEECCC
Confidence            665433211 00111 111223333467788888765     45889998876533210     111111 122233  5


Q ss_pred             CEEEEEecCCCCCCcceEEEEECC
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~  239 (469)
                      +.+++.|+.++     .+-++|+.
T Consensus       324 g~~laS~S~D~-----tvrvw~ip  342 (365)
T 4h5i_A          324 STYVASVSAAN-----TIHIIKLP  342 (365)
T ss_dssp             SCEEEEEETTS-----EEEEEECC
T ss_pred             CCEEEEEeCCC-----eEEEEEcC
Confidence            67777777533     35566653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=82.59  E-value=37  Score=32.95  Aligned_cols=178  Identities=11%  Similarity=-0.071  Sum_probs=80.2

Q ss_pred             EECCEEEEEccccCCCCCcceEEEEECCCC----eEEEeecCCCC--CCCC-cceEEEEECCEEEEEeccCCCCCccCcE
Q 012184           60 KWGTKLLILGGHYKKSSDSMIVRFIDLETN----LCGVMETSGKV--PVAR-GGHSVTLVGSRLIIFGGEDRSRKLLNDV  132 (469)
Q Consensus        60 ~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~----~W~~~~~~g~~--p~~r-~~~~~~~~~~~lyi~GG~~~~~~~~~~v  132 (469)
                      .-+.+||+-|...      +.++++|+.++    +-.+.......  +... .-|++....+.|||-.-.+..+...+.+
T Consensus        93 ~~r~~l~v~~l~s------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRS------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTT------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCC------CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeE
Confidence            3366777776542      44999999877    33332200000  0011 1233333333366632111122346789


Q ss_pred             EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec----------CCCC----cccCcEEEEECCCCceEeeee
Q 012184          133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG----------CSHS----IFFNDLHVLDLQTNEWSQPEI  198 (469)
Q Consensus       133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG----------~~~~----~~~~~i~~~d~~~~~W~~~~~  198 (469)
                      .++|..|.+-..--..+..|.. .++.+-.-.++.+++.--          ....    ...+.|++||+.+.+-..  .
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t  243 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S  243 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred             EEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence            9999998775443322222211 122222222322333332          1111    346889999998764222  1


Q ss_pred             cCCCCCCCcc--eEEEEE---CCEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184          199 KGDLVTGRAG--HAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  247 (469)
Q Consensus       199 ~~~~p~~r~~--~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~  247 (469)
                      . +....-..  |....+   +..+||..-.+.....+.+++|......|....
T Consensus       244 I-~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          244 L-TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             E-ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             E-ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence            1 11111011  111112   245666654322333456665555557776543

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=82.59  E-value=5.4  Score=29.01  Aligned_cols=21  Identities=24%  Similarity=0.148  Sum_probs=9.8

Q ss_pred             HHhhhHHHHHHHHHHHHHHHH
Q 012184          403 VAERSRCFKLEAQIAELQKML  423 (469)
Q Consensus       403 ~~~~~~~~~~~~~~~e~~~~l  423 (469)
                      ..+..++.+++.++.+++.++
T Consensus        25 e~le~~Ie~LE~~i~~le~~l   45 (89)
T 2lw1_A           25 EQLPQLLEDLEAKLEALQTQV   45 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555554

>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*

Probab=82.58  E-value=1.7  Score=40.06  Aligned_cols=42  Identities=5%  Similarity=0.159  Sum_probs=19.5

Q ss_pred             hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184          381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  422 (469)
Q Consensus       381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~  422 (469)
                      +..++..+...+.+++.++..+...+.++++|++++.+++.+
T Consensus        14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~   55 (323)
T 1lwu_C           14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT   55 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444455555554455555555554444443

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=82.28  E-value=7.2  Score=27.33  Aligned_cols=16  Identities=31%  Similarity=0.383  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 012184          432 EVQILRQQKSAFEQEM  447 (469)
Q Consensus       432 e~~~~~q~~~~~~~~~  447 (469)
                      |+..++++++..+.++
T Consensus        55 El~~Lq~qLe~kd~ei   70 (81)
T 3qh9_A           55 EVAQLQEQVALKDAEI   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHH
Confidence            3333334443333333

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=82.24  E-value=1.9  Score=24.83  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=16.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184          426 SQTIENEVQILRQQKSAFEQEMERATS  452 (469)
Q Consensus       426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~  452 (469)
                      +.+||.+++++..++..++.+..+++.
T Consensus         3 MnQLE~kVEeLl~~~~~Le~EV~RL~~   29 (36)
T 1kd8_A            3 VKQLEAEVEEIESEVWHLENEVARLEK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            445666666666666666666655543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=82.12  E-value=32  Score=31.85  Aligned_cols=159  Identities=13%  Similarity=0.055  Sum_probs=77.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-E--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-V--GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~--~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      .+.+|+.+....     ..++++++....-.......+.+..+.+....+ .  ++.|++..+       ...++.||+.
T Consensus       147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~fD~~  214 (334)
T 2p9w_A          147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAFDVS  214 (334)
T ss_dssp             TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEEECS
T ss_pred             CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-------CCeEEEEcCC
Confidence            688999765321     349999998653222211112233455544444 4  335666644       2348999988


Q ss_pred             CCeEEEeeeC--CCCCCCCCCceE--EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCC---CCcceEE
Q 012184          139 TMTWDAVEVT--QTPPAPRYDHSA--ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT---GRAGHAG  211 (469)
Q Consensus       139 t~~W~~~~~~--g~~p~~r~~~~~--~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~---~r~~~~~  211 (469)
                      +.....++..  |.. ..-.+...  ..--+++++++.-.     .+....+-...+ |......+..|.   ++...++
T Consensus       215 ~pv~~~v~~~~~G~~-~~~~~~dgilp~~~~G~vllV~~~-----~~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~  287 (334)
T 2p9w_A          215 KPYAWPEPVKINGDF-GTLSGTEKIVTVPVGNESVLVGAR-----APYAISFRSWDN-WKSANIKKTKRSELQNSGFTAV  287 (334)
T ss_dssp             SSSCCCEECEESSCC-CCCTTEEEEEEEEETTEEEEEEEE-----TTEEEEEECSST-TSEEEEEEEECGGGGSSCEEEE
T ss_pred             CCcceeecccccCCc-ccccCcccccccccCCEEEEEEcC-----CCCEEEEECCCC-cceeEEeeeecCccccCceeEE
Confidence            5432122221  221 01111122  22125556444322     134455554444 988665544333   3433344


Q ss_pred             EE----ECCEEEEEecCCCC---CCcceEEEEECC
Q 012184          212 IT----IDENWYIVGGGDNN---NGCQETIVLNMT  239 (469)
Q Consensus       212 ~~----~~~~l~v~GG~~~~---~~~~d~~~~d~~  239 (469)
                      +.    .++++|++.++-..   +....+-++|+.
T Consensus       288 t~~~~~~~~~iYvv~~~f~~~~~g~r~~f~~~di~  322 (334)
T 2p9w_A          288 ADYYQGSEQGLYAVSAFFDNGAHGGRSDYPLYKLD  322 (334)
T ss_dssp             EEEEETTEEEEEEEECCGGGTTTSCCCCEEEEECC
T ss_pred             EEeccccCCeEEEEeeecCCcccCCcceeechhhh
Confidence            44    56889999875321   223445555554

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=81.96  E-value=2.3  Score=24.18  Aligned_cols=29  Identities=14%  Similarity=0.265  Sum_probs=21.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184          425 SSQTIENEVQILRQQKSAFEQEMERATSV  453 (469)
Q Consensus       425 ~~~~~e~e~~~~~q~~~~~~~~~~~~~~~  453 (469)
                      .+.++|..++++.+++..++.|+.+++..
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l   30 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKKL   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            45677888888888888888888766554

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=81.88  E-value=2.5  Score=24.01  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184          426 SQTIENEVQILRQQKSAFEQEMERATSVQ  454 (469)
Q Consensus       426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~~q  454 (469)
                      +.++|.+.+++.+++..++.|+.+++...
T Consensus         3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL   31 (34)
T 1uo4_A            3 MKQIEDKGEEILSKLYHIENELARIKKLL   31 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45778888888888888888887776654

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=81.79  E-value=2.3  Score=24.45  Aligned_cols=27  Identities=11%  Similarity=0.253  Sum_probs=17.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184          426 SQTIENEVQILRQQKSAFEQEMERATS  452 (469)
Q Consensus       426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~  452 (469)
                      +.+||..++++..++..++.+..+++.
T Consensus         3 MnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            3 VKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            456666666666666666666665544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=81.75  E-value=38  Score=32.90  Aligned_cols=132  Identities=9%  Similarity=-0.019  Sum_probs=61.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEe----------ccCCCC---C
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFG----------GEDRSR---K  127 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~G----------G~~~~~---~  127 (469)
                      ++ |||..--+..+.....+.++|..|+.=..--..+..|. ..+|..-. -++++++.-          |+....   .
T Consensus       148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            45 77753222223345679999999887444332222222 12222221 233333333          222211   3


Q ss_pred             ccCcEEEEECCCCeEEEeeeCCCC-CCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184          128 LLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       128 ~~~~v~~~d~~t~~W~~~~~~g~~-p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      +.+.|.+||+.+++-..--..|.. ..||  +....++  ..++|+..-.+.....+.+++|....+.|....
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence            578899999998743322111100 0111  1111122  346777654222223456666655567787654

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=81.72  E-value=10  Score=31.39  Aligned_cols=45  Identities=7%  Similarity=0.019  Sum_probs=19.2

Q ss_pred             hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHH
Q 012184          366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  410 (469)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~  410 (469)
                      .+.....-++.|..++..+..++.....|++.++.+++.++.+..
T Consensus        14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~   58 (190)
T 4emc_A           14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK   58 (190)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334444444445444444444444555555555555555444443

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=81.70  E-value=3.7  Score=23.58  Aligned_cols=29  Identities=10%  Similarity=0.279  Sum_probs=16.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184          423 LESSQTIENEVQILRQQKSAFEQEMERAT  451 (469)
Q Consensus       423 l~~~~~~e~e~~~~~q~~~~~~~~~~~~~  451 (469)
                      |+.-++|.+++++.+.++.++.++.+++.
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            44445566666666666666666655443

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=81.57  E-value=14  Score=27.34  Aligned_cols=17  Identities=18%  Similarity=0.249  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012184          431 NEVQILRQQKSAFEQEM  447 (469)
Q Consensus       431 ~e~~~~~q~~~~~~~~~  447 (469)
                      +....++.++..+..++
T Consensus        65 r~~~~L~~~~~~lk~~L   81 (103)
T 4h22_A           65 HAHSILQFQFAEVKEAL   81 (103)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444444

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=81.53  E-value=6.1  Score=27.74  Aligned_cols=11  Identities=27%  Similarity=0.265  Sum_probs=4.2

Q ss_pred             HHHHHHHhhhH
Q 012184          398 VQGQLVAERSR  408 (469)
Q Consensus       398 ~~~~l~~~~~~  408 (469)
                      .+.+++.++.-
T Consensus        23 ~qaEl~sLrrT   33 (78)
T 3iv1_A           23 AQAELNALKRT   33 (78)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HhHHHHHHHHH
Confidence            33334433333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=81.52  E-value=37  Score=32.27  Aligned_cols=232  Identities=9%  Similarity=-0.048  Sum_probs=111.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe-EEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~~~   94 (469)
                      .+.++|+.++.-..+....               ..++  .+....++.||+......+     .++.||+.+.. ...+
T Consensus       153 ~I~~id~~~g~~~~~~~~~---------------~~~~--ia~~~~g~~l~~~d~~~~~-----~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          153 RVRLISVDDNKVTTVHPGF---------------KGGK--PAVTKDKQRVYSIGWEGTH-----TVYVYMKASGWAPTRI  210 (409)
T ss_dssp             EEEEEETTTTEEEEEEETC---------------CBCB--CEECTTSSEEEEEBSSTTC-----EEEEEEGGGTTCEEEE
T ss_pred             cEEEEECCCCEEEEeeccC---------------CCCc--eeEecCCCcEEEEecCCCc-----eEEEEEcCCCceeEEe
Confidence            5777787776665554432               1111  1211224556666432211     59999987553 2333


Q ss_pred             ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC-c-eEEEEc-CcEEE
Q 012184           95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-H-SAALHA-NRYLI  169 (469)
Q Consensus        95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~-~-~~~~~~-~~~l~  169 (469)
                      ..... +....-+++++.  ++.||+...       ...+++||+.+.....+...+........ + .++... ++.||
T Consensus       211 g~~~~-~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          211 GQLGS-TFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EECCT-TSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             eeccc-hhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            21111 011112233333  578888321       33699999998876555322211112222 2 455554 57899


Q ss_pred             EEecCCCCcccCcEEEEECCCCceEeeeecCCCCC--------C--CcceEEEEE-CCEEEEEecCCCCCCcceEEEEEC
Q 012184          170 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT--------G--RAGHAGITI-DENWYIVGGGDNNNGCQETIVLNM  238 (469)
Q Consensus       170 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~--------~--r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~  238 (469)
                      +....     .+.|++|++... ...+...+..+.        .  .....++.. ++.||+.-..    ..+.+.++|+
T Consensus       283 v~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~----~~~~I~~~~~  352 (409)
T 3hrp_A          283 MSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF----KGYCLRKLDI  352 (409)
T ss_dssp             EEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT----TTCEEEEEET
T ss_pred             EEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC----CCCEEEEEEC
Confidence            87532     357999988654 222221110000        0  112233333 4568887430    1246889997


Q ss_pred             CCCcEEEeccCCCCC-------CCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          239 TKLAWSILTSVKGRN-------PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       239 ~~~~W~~~~~~~~~~-------p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      .+.....+...+...       ...+. ..-..+++++++.|||....+.    .+.++++
T Consensus       353 ~~G~v~~~~g~~~~~g~~~g~~~~~~~-~~P~giavd~~g~lyVad~~n~----~Ir~i~~  408 (409)
T 3hrp_A          353 LDGYVSTVAGQVDVASQIDGTPLEATF-NYPYDICYDGEGGYWIAEAWGK----AIRKYAV  408 (409)
T ss_dssp             TTTEEEEEEECTTCBSCCCBSTTTCCB-SSEEEEEECSSSEEEEEESTTC----EEEEEEE
T ss_pred             CCCEEEEEeCCCCCCCcCCCChhceEe-CCceEEEEcCCCCEEEEECCCC----eEEEEEe
Confidence            676655543221100       00111 1233445555678888764332    3555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=81.23  E-value=32  Score=31.24  Aligned_cols=141  Identities=11%  Similarity=0.018  Sum_probs=69.1

Q ss_pred             cceEEEEECCCCeE-EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCC--c-cCcEEEEECCCCeEEEeeeCCCCCC
Q 012184           78 SMIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK--L-LNDVHFLDLETMTWDAVEVTQTPPA  153 (469)
Q Consensus        78 ~~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~--~-~~~v~~~d~~t~~W~~~~~~g~~p~  153 (469)
                      ...++.+|+.++.. ..+.   . +   .....+...+.+++.+.......  . ...++.+|  ++.+..+...     
T Consensus       151 ~~~l~~~d~~~~~~~~~l~---~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----  216 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFE---K-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-----  216 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEE---E-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----
T ss_pred             cceEEEEECCCCeEEeeec---C-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-----
Confidence            35699999999987 6665   2 2   22233333444555554332111  2 45788888  7777776531     


Q ss_pred             CCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcc
Q 012184          154 PRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ  231 (469)
Q Consensus       154 ~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~  231 (469)
                        .......-++++|++.+....  ......++++|  ++.+..+..  .  ............+.+|+.+..++   ..
T Consensus       217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~--~~~~~~~~~~~sdg~~~~~~~~~---~~  285 (347)
T 2gop_A          217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--E--VDRGVGQAKIKDGKVYFTLFEEG---SV  285 (347)
T ss_dssp             --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--T--CCSEEEEEEEETTEEEEEEEETT---EE
T ss_pred             --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--c--CCcccCCccEEcCcEEEEEecCC---cE
Confidence              111222333344444432221  12245799998  666655431  1  11122221222244666554332   45


Q ss_pred             eEEEEECCCCcEEEe
Q 012184          232 ETIVLNMTKLAWSIL  246 (469)
Q Consensus       232 d~~~~d~~~~~W~~~  246 (469)
                      .+| ++  +.....+
T Consensus       286 ~l~-~~--~g~~~~~  297 (347)
T 2gop_A          286 NLY-IW--DGEIKPI  297 (347)
T ss_dssp             EEE-EE--SSSEEEE
T ss_pred             EEE-Ec--CCceEEE
Confidence            678 77  3444443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=81.18  E-value=12  Score=38.68  Aligned_cols=104  Identities=7%  Similarity=-0.033  Sum_probs=49.3

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCC---CCcceEEEEECCCCeE-
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---SDSMIVRFIDLETNLC-   91 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~---~~~~~~~~~d~~t~~W-   91 (469)
                      .++.+|+.+++-..+......             ...........-+++.++++......   .....++++|+.++.. 
T Consensus        37 ~i~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~  103 (719)
T 1z68_A           37 NIVLYNIETGQSYTILSNRTM-------------KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV  103 (719)
T ss_dssp             CEEEEESSSCCEEEEECHHHH-------------HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred             CEEEEEcCCCcEEEEEccccc-------------cccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc
Confidence            788999988886655432100             00001111112244444444321110   1134699999999876 


Q ss_pred             --EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEee
Q 012184           92 --GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  146 (469)
Q Consensus        92 --~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~  146 (469)
                        ..+.       ......+..=+++.++++.       .+.++++|+.++.-..+.
T Consensus       104 ~~~~l~-------~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~g~~~~l~  146 (719)
T 1z68_A          104 RGNELP-------RPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPGDPPFQIT  146 (719)
T ss_dssp             CSSCCC-------SSBCCEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECC
T ss_pred             cceecC-------cccccceECCCCCEEEEEE-------CCeEEEEeCCCCCcEEEe
Confidence              3221       1111111111344333431       236888888877665554

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=81.07  E-value=20  Score=28.87  Aligned_cols=20  Identities=0%  Similarity=0.117  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 012184          429 IENEVQILRQQKSAFEQEME  448 (469)
Q Consensus       429 ~e~e~~~~~q~~~~~~~~~~  448 (469)
                      |++++.+..-.+..++.++.
T Consensus       120 L~~ql~e~~~~l~~lq~ql~  139 (154)
T 2ocy_A          120 LTEQLREKDTLLDTLTLQLK  139 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=81.03  E-value=46  Score=33.04  Aligned_cols=115  Identities=12%  Similarity=0.057  Sum_probs=59.4

Q ss_pred             EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      ...+++.+++..+..     +.+.+||+.+..-..+...   +.  .. .+..-+++.+++++.+.. ....++++|+.+
T Consensus       117 ~s~dg~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~---~~--~~-~~~spDG~~la~~~~~~~-~~~~i~~~d~~~  184 (582)
T 3o4h_A          117 GVDTGEAVVFTGATE-----DRVALYALDGGGLRELARL---PG--FG-FVSDIRGDLIAGLGFFGG-GRVSLFTSNLSS  184 (582)
T ss_dssp             EEECSSCEEEEEECS-----SCEEEEEEETTEEEEEEEE---SS--CE-EEEEEETTEEEEEEEEET-TEEEEEEEETTT
T ss_pred             eCCCCCeEEEEecCC-----CCceEEEccCCcEEEeecC---CC--ce-EEECCCCCEEEEEEEcCC-CCeEEEEEcCCC
Confidence            333344455554432     2344778888876665421   11  22 222235555555543322 234699999999


Q ss_pred             CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184          241 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       241 ~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~  298 (469)
                      ..+..+.....         ........++++.++.+..++  ...++++|+.+....
T Consensus       185 g~~~~l~~~~~---------~~~~~~~SpDG~~l~~~~~~~--~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          185 GGLRVFDSGEG---------SFSSASISPGMKVTAGLETAR--EARLVTVDPRDGSVE  231 (582)
T ss_dssp             CCCEEECCSSC---------EEEEEEECTTSCEEEEEECSS--CEEEEEECTTTCCEE
T ss_pred             CCceEeecCCC---------ccccceECCCCCEEEEccCCC--eeEEEEEcCCCCcEE
Confidence            88877643211         112233344444444443332  346889998766543

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=80.76  E-value=3.1  Score=23.43  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=20.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184          426 SQTIENEVQILRQQKSAFEQEMERATSV  453 (469)
Q Consensus       426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~~  453 (469)
                      +.++|..++++.+++..++.|+.+++..
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l   29 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXL   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567777778888888887777766554

>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1

Probab=80.74  E-value=10  Score=26.07  Aligned_cols=15  Identities=40%  Similarity=0.488  Sum_probs=5.6

Q ss_pred             hHHHHHHHHHHHHHH
Q 012184          390 ELSKELSSVQGQLVA  404 (469)
Q Consensus       390 e~~~el~~~~~~l~~  404 (469)
                      ++...+...+++++.
T Consensus        15 el~~klk~~~ee~~~   29 (71)
T 1uix_A           15 ELNNKLKEAQEQLSR   29 (71)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=80.65  E-value=33  Score=31.08  Aligned_cols=206  Identities=10%  Similarity=-0.024  Sum_probs=100.3

Q ss_pred             eeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCC-CCCCCcceEEEEE--CCEEEEEeccCCC-----
Q 012184           56 HCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK-VPVARGGHSVTLV--GSRLIIFGGEDRS-----  125 (469)
Q Consensus        56 ~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~-~p~~r~~~~~~~~--~~~lyi~GG~~~~-----  125 (469)
                      +.++..  ++.||+.-..       ..+.+||+.++..+.+..... .+..+ -..+++-  ++.||+.-.....     
T Consensus        83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~-p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKW-LYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSC-EEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccc-cceEEEecCCCEEEEECCccccccccc
Confidence            445555  5788887321       128889988776666542111 11111 1223332  4678876322100     


Q ss_pred             ------CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCC---ceEe
Q 012184          126 ------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQ  195 (469)
Q Consensus       126 ------~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~  195 (469)
                            ......+++||+.+.....+...  ...|   ..++...+ +.||+.-..     .+.|++|++.+.   ....
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~p---~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~  224 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLLLKE--LHVP---GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEV  224 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEEEEE--ESCC---CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEE
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEeccC--CccC---cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccce
Confidence                  01235699999988876654321  1111   23343334 458876432     357999998753   3333


Q ss_pred             eeecCCCCCCCcceEEEEE-CCEEEEEecCCCC-----CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC
Q 012184          196 PEIKGDLVTGRAGHAGITI-DENWYIVGGGDNN-----NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG  269 (469)
Q Consensus       196 ~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~-----~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~  269 (469)
                      +.   ..+.   ...++.. ++++||.......     .....+.+||+....-..+....+. + .. ..+.+.  . .
T Consensus       225 ~~---~~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~-~-~~-~~~~~~--~-~  292 (322)
T 2fp8_A          225 LV---KIPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPF-A-GE-HFEQIQ--E-H  292 (322)
T ss_dssp             EE---ECSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTT-T-TS-CCCEEE--E-E
T ss_pred             EE---eCCC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCC-c-cc-cceEEE--E-e
Confidence            32   1221   2223332 4578877532110     0124588999875544444321111 0 01 111111  1 2


Q ss_pred             CcEEEEEeccCCCCCceEEEEECCCC
Q 012184          270 EHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       270 ~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      ++.|||....    .+.+.+|++..+
T Consensus       293 ~g~L~v~~~~----~~~i~~~~~~~~  314 (322)
T 2fp8_A          293 DGLLYIGTLF----HGSVGILVYDKK  314 (322)
T ss_dssp             TTEEEEECSS----CSEEEEEEC---
T ss_pred             CCEEEEeecC----CCceEEEecccc
Confidence            5688876532    235888887543

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=80.40  E-value=8.5  Score=28.21  Aligned_cols=41  Identities=29%  Similarity=0.485  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012184          410 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA  450 (469)
Q Consensus       410 ~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~  450 (469)
                      .+++.++.++++++..++..+.+.-.++-+-..++.+|+..
T Consensus        50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F   90 (96)
T 1t3j_A           50 KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34455555566666666666666655555555666666544

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=80.40  E-value=15  Score=29.42  Aligned_cols=43  Identities=21%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             hcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184          385 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  427 (469)
Q Consensus       385 ~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~  427 (469)
                      .....+..+.+..++..|....++....+..+.+|+.++..+.
T Consensus        72 drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~  114 (147)
T 2b9c_A           72 DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT  114 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555666666666666666666666666655544

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=80.28  E-value=15  Score=28.25  Aligned_cols=12  Identities=33%  Similarity=0.506  Sum_probs=4.9

Q ss_pred             hhHHHHHHHHHH
Q 012184          406 RSRCFKLEAQIA  417 (469)
Q Consensus       406 ~~~~~~~~~~~~  417 (469)
                      +.++..|+.+++
T Consensus        46 ~~~i~~Le~eL~   57 (120)
T 3i00_A           46 KGHVSELEADLA   57 (120)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334444444433

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=80.22  E-value=6.7  Score=28.05  Aligned_cols=20  Identities=15%  Similarity=0.112  Sum_probs=7.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHH
Q 012184          397 SVQGQLVAERSRCFKLEAQI  416 (469)
Q Consensus       397 ~~~~~l~~~~~~~~~~~~~~  416 (469)
                      +++.++..++..++++..++
T Consensus        31 ~Lq~Ev~~LRGqiE~~~~~l   50 (83)
T 2xdj_A           31 DNQSDIDSLRGQIQENQYQL   50 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHH
Confidence            33333333333333333333

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=80.15  E-value=3.6  Score=30.48  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=10.8

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012184          390 ELSKELSSVQGQLVAERSRCFKLEAQ  415 (469)
Q Consensus       390 e~~~el~~~~~~l~~~~~~~~~~~~~  415 (469)
                      .+.+++..++.+...++++...|+-+
T Consensus        16 ~lr~ei~~Le~E~~rLr~~~~~LE~~   41 (100)
T 1go4_E           16 TLRLKVEELEGERSRLEEEKRMLEAQ   41 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=80.02  E-value=72  Score=34.58  Aligned_cols=197  Identities=10%  Similarity=0.020  Sum_probs=96.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .++.+|+.++.-..+....                 ......+..-+++.++++...........++.+|..++.-..+.
T Consensus        34 ~l~~~~~~gg~~~~lt~~~-----------------~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt   96 (1045)
T 1k32_A           34 DLWEHDLKSGSTRKIVSNL-----------------GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   96 (1045)
T ss_dssp             EEEEEETTTCCEEEEECSS-----------------SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cEEEEECCCCcEEEeeeCC-----------------CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcc
Confidence            6777787777655554321                 11111112224554444433211112346999999998755554


Q ss_pred             cCCCCCCCC-cceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184           96 TSGKVPVAR-GGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  172 (469)
Q Consensus        96 ~~g~~p~~r-~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G  172 (469)
                      ..+.....| .....+.+  ++++++.+...........++.+|+.++....+..   .+  .  ..+... .+ +++.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~--~--~~~~~s-pG-~l~~~  167 (1045)
T 1k32_A           97 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GP--A--THILFA-DG-RRVIG  167 (1045)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CS--C--SEEEEE-TT-EEEEE
T ss_pred             cCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecC---CC--c--ceeeeC-CC-EEEEe
Confidence            210000001 11133333  45666666544332235679999998887665542   11  1  122222 35 55555


Q ss_pred             cCCC---------CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184          173 GCSH---------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       173 G~~~---------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      ....         ......+|.++.. .....+.   .  ........+..++.+++.+..+   ....+|.+++....-
T Consensus       168 ~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~---~--~~~~v~~~~~s~d~l~~~~~~d---g~~~l~~~~~~g~~~  238 (1045)
T 1k32_A          168 RNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIV---D--MSTHVSSPVIVGHRIYFITDID---GFGQIYSTDLDGKDL  238 (1045)
T ss_dssp             ESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEE---C--CSSCCEEEEEETTEEEEEECTT---SSCEEEEEETTSCSC
T ss_pred             ccCCCccccccccCCCcCCEEEECCC-CCeEECc---C--CCCcccceEEeCCEEEEEEecc---CceEEEEEeCCCCcc
Confidence            3211         1223567766544 5555542   1  1122223444466777666533   245789998876655


Q ss_pred             EEec
Q 012184          244 SILT  247 (469)
Q Consensus       244 ~~~~  247 (469)
                      ..+.
T Consensus       239 ~~l~  242 (1045)
T 1k32_A          239 RKHT  242 (1045)
T ss_dssp             EECC
T ss_pred             eEec
Confidence            5543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	469
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	6e-10
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	8e-09
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-08
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	1e-07
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	2e-06

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 6e-10
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 12/160 (7%)

Query: 51  PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT 110
                  +      L  +GG    +  +    +         +          R G  V 
Sbjct: 137 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM----NTIRSGAGVC 192

Query: 111 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 170
           ++ + +   GG D  +  LN V   D+ET TW            R      +H  R + V
Sbjct: 193 VLHNCIYAAGGYDG-QDQLNSVERYDVETETWT---FVAPMKHRRSALGITVHQGR-IYV 247

Query: 171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 210
            GG     F + +   D  T+ WS+      + +GR+G  
Sbjct: 248 LGGYDGHTFLDSVECYDPDTDTWSE---VTRMTSGRSGVG 284

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 8e-09
 Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 5/120 (4%)

Query: 112 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF 171
           VG  +   GG  R    L+ +   +    TW  +        PR   +  +       V 
Sbjct: 3   VGRLIYTAGGYFRQS--LSYLEAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVG 57

Query: 172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ 231
           G  +      D   LD      +Q      +   R       ID + Y VGG        
Sbjct: 58  GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 117

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 32/213 (15%), Positives = 58/213 (27%), Gaps = 15/213 (7%)

Query: 51  PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT 110
               +   V      +   G          V   + E +          +   R G  V 
Sbjct: 89  SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD---EWHLVAPMLTRRIGVGVA 145

Query: 111 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 170
           ++   L   GG D + +L N       E   W  +    T        +     +  +  
Sbjct: 146 VLNRLLYAVGGFDGTNRL-NSAECYYPERNEWRMITAMNTI----RSGAGVCVLHNCIYA 200

Query: 171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC 230
            GG       N +   D++T  W+       +   R+           Y++GG D +   
Sbjct: 201 AGGYDGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVHQGRIYVLGGYDGHTFL 257

Query: 231 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVC 263
                 +     WS +T +         G+ V 
Sbjct: 258 DSVECYDPDTDTWSEVTRM----TSGRSGVGVA 286

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 1e-07
 Identities = 41/254 (16%), Positives = 74/254 (29%), Gaps = 16/254 (6%)

Query: 62  GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG 121
           G  +   GG++++S     +   +              + V R G +  +VG  L   GG
Sbjct: 4   GRLIYTAGGYFRQSLSY--LEAYNPSNG---TWLRLADLQVPRSGLAGCVVGGLLYAVGG 58

Query: 122 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFN 181
            + S     D   LD      +          PR         + ++   GG    I  N
Sbjct: 59  RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHN 117

Query: 182 DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 241
            +   + + +EW        ++T R G     ++   Y VGG D  N           + 
Sbjct: 118 SVERYEPERDEWHLV---APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN 174

Query: 242 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK 301
            W ++T++           S     +       A G       N V    ++        
Sbjct: 175 EWRMITAMNTIR-------SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 227

Query: 302 IFQSPAAAAAAASV 315
             +   +A      
Sbjct: 228 PMKHRRSALGITVH 241

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 17/192 (8%)

Query: 101 PVARGGHSVTLVGSRLIIFGGEDRSRKL-----LNDVHFLDLETMTWDAVEVTQTPPAPR 155
           P+     ++     R++++              +      D  T       VT T     
Sbjct: 18  PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-M 76

Query: 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID 215
           +    ++  N  ++V GG           + D  ++ W  P     +  G    A ++  
Sbjct: 77  FCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSW-IPGPDMQVARGYQSSATMSDG 131

Query: 216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA------IIEG 269
             + I G        +   V + +   W+ L + K    L ++   +  +          
Sbjct: 132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK 191

Query: 270 EHHLVAFGGYNG 281
           +  +   G    
Sbjct: 192 KGSVFQAGPSTA 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	469
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.07
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.53
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.46
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.14
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	96.11
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.8
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	95.74
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.71
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.7
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.59
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.49
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	95.39
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.19
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	95.13
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.1
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.1
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.03
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.77
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.66
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.65
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	94.35
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.17
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.03
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.68
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.49
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.02
d1tbga_	340	beta1-subunit of the signal-transducing G protein	91.71
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	91.23
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	90.97
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	90.97
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	90.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	90.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.5
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	89.68
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	89.49
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	89.47
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.4
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	89.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	87.93
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.61
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	87.49
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	87.47
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	87.44
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	86.86
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	86.05
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	85.69
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	84.52
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	84.12
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	83.5
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	82.26

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-42  Score=320.61  Aligned_cols=277  Identities=18%  Similarity=0.245  Sum_probs=244.0

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC---CCC
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---SSD   77 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~---~~~   77 (469)
                      ||||||... ..++ ++++||+.+++|+.++++                |.+|.+|++++++++||++||....   ...
T Consensus         7 iyv~GG~~~-~~~~-~~~~yd~~t~~W~~~~~~----------------p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~   68 (288)
T d1zgka1           7 IYTAGGYFR-QSLS-YLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTD   68 (288)
T ss_dssp             EEEECCBSS-SBCC-CEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCEEEETTEEEE
T ss_pred             EEEECCcCC-CCCc-eEEEEECCCCeEEECCCC----------------CCccceeEEEEECCEEEEEeCcccCCCCccc
Confidence            699999864 5688 999999999999999876                7889999999999999999997543   225


Q ss_pred             cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184           78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  157 (469)
Q Consensus        78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~  157 (469)
                      ++++++||+.+++|+.++   ++|.+|.+|++++++++||++||..... ..+.++.||+.+..|....   .++.+|.+
T Consensus        69 ~~~~~~yd~~~~~w~~~~---~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~r~~  141 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIG  141 (288)
T ss_dssp             CCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBS
T ss_pred             cchhhhcccccccccccc---cccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccc---cccccccc
Confidence            678999999999999998   8899999999999999999999987654 6888999999999998875   67789999


Q ss_pred             ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184          158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      |+++.+ ++.+|++||.......++++.||+.+++|....   ..+.++..|+++.++++++++||.+....+++++.||
T Consensus       142 ~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         142 VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             ceeeee-eecceEecCcccccccceEEEeecccccccccc---ccccccccccccceeeeEEEecCccccccccceeeee
Confidence            999988 667999999987778889999999999999864   6678889999999999999999998888889999999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCCCchhhcchh
Q 012184          238 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS  314 (469)
Q Consensus       238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~  314 (469)
                      +.+..|..++++    |.+|.+|+++.+    +++|||+||.++. ..+++++||+.+++|..+..+|.++..+++++
T Consensus       218 ~~~~~~~~~~~~----p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~~  287 (288)
T d1zgka1         218 VETETWTFVAPM----KHRRSALGITVH----QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV  287 (288)
T ss_dssp             TTTTEEEECCCC----SSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred             ecceeeecccCc----cCcccceEEEEE----CCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeEEEEE
Confidence            999999998654    566888888776    7899999998764 67889999999999999999999988876553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-33  Score=258.91  Aligned_cols=231  Identities=16%  Similarity=0.180  Sum_probs=203.2

Q ss_pred             CEEEcccC----CCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCC
Q 012184            1 MLLRCSIR----NYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS   76 (469)
Q Consensus         1 l~~~GG~~----~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~   76 (469)
                      |||+||..    ....++ ++++||+.+++|+.++++                |.+|.+|++++++++||++||..... 
T Consensus        53 iyv~GG~~~~~~~~~~~~-~~~~yd~~~~~w~~~~~~----------------p~~r~~~~~~~~~~~i~~~gg~~~~~-  114 (288)
T d1zgka1          53 LYAVGGRNNSPDGNTDSS-ALDCYNPMTNQWSPCAPM----------------SVPRNRIGVGVIDGHIYAVGGSHGCI-  114 (288)
T ss_dssp             EEEECCEEEETTEEEECC-CEEEEETTTTEEEECCCC----------------SSCCBTCEEEEETTEEEEECCEETTE-
T ss_pred             EEEEeCcccCCCCccccc-hhhhcccccccccccccc----------------cceecceeccccceeeEEecceeccc-
Confidence            68999953    235566 999999999999999887                78999999999999999999986544 


Q ss_pred             CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184           77 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  156 (469)
Q Consensus        77 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~  156 (469)
                      ..+.++.||+.+..|...+   .+|.+|.+|+++.+++.+|++||..... ..++++.||+.+++|....   ..+.++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~GG~~~~~-~~~~~~~~d~~~~~~~~~~---~~~~~~~  187 (288)
T d1zgka1         115 HHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMIT---AMNTIRS  187 (288)
T ss_dssp             ECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECC---CCSSCCB
T ss_pred             ccceeeeeccccCcccccc---ccccccccceeeeeeecceEecCccccc-ccceEEEeecccccccccc---ccccccc
Confidence            5677999999999999887   7888999999999999999999987654 5778999999999999875   6677888


Q ss_pred             CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      .++++.+ +++|+++||......+++.++||+.+++|..+.   +.|.+|..|+++.++++||||||.+....++++++|
T Consensus       188 ~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~y  263 (288)
T d1zgka1         188 GAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECY  263 (288)
T ss_dssp             SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEE
T ss_pred             cccccce-eeeEEEecCccccccccceeeeeecceeeeccc---CccCcccceEEEEECCEEEEEecCCCCeecceEEEE
Confidence            8888888 667999999988888899999999999999875   778999999999999999999999888888999999


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCCcceEE
Q 012184          237 NMTKLAWSILTSVKGRNPLASEGLSVCS  264 (469)
Q Consensus       237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~  264 (469)
                      |+.+++|+.++.+    |.+|.+|++++
T Consensus       264 d~~~~~W~~~~~~----p~~R~~~~~~~  287 (288)
T d1zgka1         264 DPDTDTWSEVTRM----TSGRSGVGVAV  287 (288)
T ss_dssp             ETTTTEEEEEEEC----SSCCBSCEEEE
T ss_pred             ECCCCEEEECCCC----CCCcEeEEEEE
Confidence            9999999999876    56688887654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=1.7e-29  Score=246.34  Aligned_cols=290  Identities=11%  Similarity=0.057  Sum_probs=200.3

Q ss_pred             CEEEcccCCCcc------cCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEE-ECCEEEEEccccC
Q 012184            1 MLLRCSIRNYTL------LEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYK   73 (469)
Q Consensus         1 l~~~GG~~~~~~------~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iy~~GG~~~   73 (469)
                      ||||||......      ++ .+++|||.+++|+.++++..              |..+..++++. .+++||++||...
T Consensus        33 v~v~GG~~~~~~~~~~~~~~-~~~~yd~~t~~w~~~~~~~~--------------~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          33 VLMWSSYRNDAFGGSPGGIT-LTSSWDPSTGIVSDRTVTVT--------------KHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             EEEEEECCCTTTCSCCCSEE-EEEEECTTTCCBCCCEEEEC--------------SCCCSSCEEEECTTSCEEEECSSST
T ss_pred             EEEEEeecCcccCCCCCcee-EEEEEECCCCcEeecCCCCC--------------CcccceeEEEEecCCcEEEeecCCC
Confidence            689999764432      23 47899999999999887632              33444444443 3788999998654


Q ss_pred             CCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC
Q 012184           74 KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  152 (469)
Q Consensus        74 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p  152 (469)
                           +++++||+.+++|+.++   ++|.+|.+|+++++ ++++|++||........+++++||+.+++|+.++.....+
T Consensus        98 -----~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~  169 (387)
T d1k3ia3          98 -----KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP  169 (387)
T ss_dssp             -----TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred             -----cceeEecCccCcccccc---cccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccc
Confidence                 34899999999999987   88999999999988 5699999998877778999999999999999886432222


Q ss_pred             CCCCCceE----------EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeec----CCCCCCCcceEEEE--ECC
Q 012184          153 APRYDHSA----------ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK----GDLVTGRAGHAGIT--IDE  216 (469)
Q Consensus       153 ~~r~~~~~----------~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~----~~~p~~r~~~~~~~--~~~  216 (469)
                      .....+..          ....++.+|++||.     .+.++.|++.+..|......    ...+..++.+++..  .++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (387)
T d1k3ia3         170 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS-----TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG  244 (387)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSS-----SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred             cccccccceeeccceeEEEEeCCCCEEEecCc-----CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCC
Confidence            11111111          11224445555553     35789999999999876422    12244455555444  368


Q ss_pred             EEEEEecCCCCCC---cceEEEE-----ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC-------
Q 012184          217 NWYIVGGGDNNNG---CQETIVL-----NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-------  281 (469)
Q Consensus       217 ~l~v~GG~~~~~~---~~d~~~~-----d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~-------  281 (469)
                      ++|++||......   ......+     +.....|..+..+    |.+|.+|+++..   ++++|||+||...       
T Consensus       245 ~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~r~~~~~~~~---~dg~i~v~GG~~~~~~~~~~  317 (387)
T d1k3ia3         245 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL----YFARTFHTSVVL---PDGSTFITGGQRRGIPFEDS  317 (387)
T ss_dssp             EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC----SSCCBSCEEEEC---TTSCEEEECCBSBCCTTCCC
T ss_pred             ceEEEEeccCCCCCcccceeecccccccccCCCceeecccc----ccccccceeeec---cCCeEEEECCcccCccCCCC
Confidence            9999999754332   1122222     2344556655544    456777755543   3568999999642       


Q ss_pred             CCCceEEEEECCCCCCCCccccCCCchhhcchhh---hHHHhhcccc
Q 012184          282 KYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASV---TAAYALAKSE  325 (469)
Q Consensus       282 ~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~---~~~~~~gg~~  325 (469)
                      .....+++||+.+++|..+..++.++..|.++++   ..++++||..
T Consensus       318 ~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~  364 (387)
T d1k3ia3         318 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL  364 (387)
T ss_dssp             SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred             cEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCC
Confidence            2345689999999999999999999988875543   3699998853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.93  E-value=1e-24  Score=212.16  Aligned_cols=256  Identities=10%  Similarity=0.098  Sum_probs=177.7

Q ss_pred             CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcc
Q 012184            1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM   79 (469)
Q Consensus         1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~   79 (469)
                      ||++||...    + .+.+||+.+++|+..+.+                |.+|.+|+++++ +++||++||........+
T Consensus        89 i~v~Gg~~~----~-~~~~yd~~~~~w~~~~~~----------------~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~  147 (387)
T d1k3ia3          89 IVVTGGNDA----K-KTSLYDSSSDSWIPGPDM----------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEK  147 (387)
T ss_dssp             EEEECSSST----T-CEEEEEGGGTEEEECCCC----------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred             EEEeecCCC----c-ceeEecCccCcccccccc----------------cccccccceeeecCCceeeeccccccccccc
Confidence            466776542    3 789999999999988877                788999999888 679999999887777888


Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCc-ceE----------EEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARG-GHS----------VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT  148 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~-~~~----------~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~  148 (469)
                      +++.||+.+++|..++.....+.... +..          ....++++|++||      ..+.++.||+.+..|......
T Consensus       148 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~------~~~~~~~~~~~~~~~~~~~~~  221 (387)
T d1k3ia3         148 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP------STAMNWYYTSGSGDVKSAGKR  221 (387)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCS------SSEEEEEECSTTCEEEEEEEC
T ss_pred             eeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecC------cCCcEEecCcccCcEeecccc
Confidence            99999999999999874322111111 111          1112345565554      355789999999999877532


Q ss_pred             ----CCCCCCCCCceEEEE-cCcEEEEEecCCCCc---ccCcEEEEEC-----CCCceEeeeecCCCCCCCcceEEEEE-
Q 012184          149 ----QTPPAPRYDHSAALH-ANRYLIVFGGCSHSI---FFNDLHVLDL-----QTNEWSQPEIKGDLVTGRAGHAGITI-  214 (469)
Q Consensus       149 ----g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~---~~~~i~~~d~-----~~~~W~~~~~~~~~p~~r~~~~~~~~-  214 (469)
                          +..+.++.+++++.. .++++|+|||.....   .......++.     ....|..   ...+|.+|..|+++.+ 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~r~~~~~~~~~  298 (387)
T d1k3ia3         222 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA---SNGLYFARTFHTSVVLP  298 (387)
T ss_dssp             EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC---TTCCSSCCBSCEEEECT
T ss_pred             ccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceee---ccccccccccceeeecc
Confidence                122344555555443 367899999975432   1222333332     3334554   4588999999988887 


Q ss_pred             CCEEEEEecCCCC------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC-CC---CC
Q 012184          215 DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-GK---YN  284 (469)
Q Consensus       215 ~~~l~v~GG~~~~------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~-~~---~~  284 (469)
                      +++|||+||....      .....+++||+.+++|+.++++    |.+|.+|+.+++.  .+++|||+||.. +.   ..
T Consensus       299 dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~----~~~R~~Hs~a~l~--~dG~v~v~GG~~~~~~~~~~  372 (387)
T d1k3ia3         299 DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----SIVRVYHSISLLL--PDGRVFNGGGGLCGDCTTNH  372 (387)
T ss_dssp             TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC----SSCCCTTEEEEEC--TTSCEEEEECCCCTTCSCCC
T ss_pred             CCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC----CCcccceEEEEEC--CCCEEEEEeCCCcCCCCccc
Confidence            6799999996432      2345689999999999998765    4678899865443  355899999952 21   35


Q ss_pred             ceEEEEEC
Q 012184          285 NEVFVMRL  292 (469)
Q Consensus       285 ~~~~~~d~  292 (469)
                      .++.+|+|
T Consensus       373 ~~~e~y~P  380 (387)
T d1k3ia3         373 FDAQIFTP  380 (387)
T ss_dssp             CEEEEEEC
T ss_pred             ceEEEEcc
Confidence            67889987

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.083  Score=46.19  Aligned_cols=179  Identities=15%  Similarity=0.179  Sum_probs=98.2

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  160 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~  160 (469)
                      +..+|+....-....     ........+...++..++.|+.+.      .+.+||+.+.+-..... +    ....-.+
T Consensus       159 i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~-~----~~~~v~~  222 (342)
T d2ovrb2         159 VKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT-G----HQSLTSG  222 (342)
T ss_dssp             EEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC-C----CCSCEEE
T ss_pred             EEEeecccceeeEEE-----cCcccccccccCCCCEEEEEeCCC------eEEEeecccceeeeEec-c----cccceeE
Confidence            667777665532221     111122334445666666776543      38889988876543321 1    1111223


Q ss_pred             EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      +...++ +++.|+.+     ..+.+||+.+.+-.... . ..........+...++.+++.|+.+     ..+.+||+.+
T Consensus       223 ~~~~~~-~l~s~s~d-----~~i~iwd~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~s~s~D-----g~i~iwd~~t  289 (342)
T d2ovrb2         223 MELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL-Q-GPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKT  289 (342)
T ss_dssp             EEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-C-STTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTT
T ss_pred             EecCCC-EEEEEcCC-----CEEEEEecccccccccc-c-ccceeeeceeecccCCCeeEEEcCC-----CEEEEEECCC
Confidence            344455 55666644     45889998776543322 1 1122223333444567777887743     2588999988


Q ss_pred             CcEEE-eccCCCCCCCCCCCcc--eEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          241 LAWSI-LTSVKGRNPLASEGLS--VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       241 ~~W~~-~~~~~~~~p~~r~~~s--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      .+... +.....      .+|.  +..+...+++.+++.|+.++.....++++|.+.
T Consensus       290 g~~i~~~~~~~~------~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         290 GEFIRNLVTLES------GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CCEEEEEEECTT------GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEecccC------CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            76532 221111      1232  333444567788899998887667788888754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=0.059  Score=47.72  Aligned_cols=196  Identities=15%  Similarity=0.100  Sum_probs=95.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+.++      .+..||+.+........   ++.....-.++.+  ++.+++.+|.+..    ..+.+++..+
T Consensus        69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~v~~s~d~~~l~~~~~~~~----~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVHG------NVRIWDTTQTTHILKTT---IPVFSGPVKDISWDSESKRIAAVGEGRE----RFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETTS------EEEEEESSSTTCCEEEE---EECSSSCEEEEEECTTSCEEEEEECCSS----CSEEEEETTT
T ss_pred             CCCeEeccccCc------eEeeeeeeccccccccc---cccccCcccccccccccccccccccccc----cccccccccc
Confidence            566777777543      38888888776432221   1111111122333  3556666654322    2366777776


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CC
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE  216 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~  216 (469)
                      .+-..     .+......-..+.+.  ++.+++.|+.+     ..+.+||+.+.+-....  .. . ...-.++... ++
T Consensus       136 ~~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~--~~-~-~~~i~~v~~~p~~  201 (311)
T d1nr0a1         136 GTSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTF--GE-H-TKFVHSVRYNPDG  201 (311)
T ss_dssp             CCBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEE--CC-C-SSCEEEEEECTTS
T ss_pred             ccccc-----cccccccccccccccccceeeecccccc-----ccccccccccccccccc--cc-c-cccccccccCccc
Confidence            54211     111111111222232  34456667654     35889998876543322  11 1 1111223322 45


Q ss_pred             EEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcc--eEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184          217 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS--VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  294 (469)
Q Consensus       217 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~  294 (469)
                      .+++.|+.+     ..+.+||..+..-...  +.... ....+|.  +..+...+++.+++.||.++    .+.+||+.+
T Consensus       202 ~~l~~~~~d-----~~v~~~d~~~~~~~~~--~~~~~-~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg----~v~iwd~~t  269 (311)
T d1nr0a1         202 SLFASTGGD-----GTIVLYNGVDGTKTGV--FEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVAT  269 (311)
T ss_dssp             SEEEEEETT-----SCEEEEETTTCCEEEE--CBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTT
T ss_pred             ccccccccc-----cccccccccccccccc--ccccc-cccccccccccccccCCCCCEEEEEeCCC----eEEEEECCC
Confidence            666666643     2477888876653322  11111 1122333  33444455556677787665    488889876


Q ss_pred             CC
Q 012184          295 RD  296 (469)
Q Consensus       295 ~~  296 (469)
                      ..
T Consensus       270 ~~  271 (311)
T d1nr0a1         270 LK  271 (311)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.24  Score=43.83  Aligned_cols=181  Identities=17%  Similarity=0.038  Sum_probs=90.2

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++.+++.|+...      .+..+|..++.-.....   ....  .-.++.+  ++..++.|+.+      +.+.+||+.+
T Consensus       152 ~~~~l~s~~~d~------~i~~~~~~~~~~~~~~~---~~~~--~v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~  214 (337)
T d1gxra_         152 DSKVCFSCCSDG------NIAVWDLHNQTLVRQFQ---GHTD--GASCIDISNDGTKLWTGGLD------NTVRSWDLRE  214 (337)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSS--CEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             cccccccccccc------ccccccccccccccccc---cccc--cccccccccccccccccccc------cccccccccc
Confidence            455556555332      28889988887444331   1111  1122222  44566666543      3488899888


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      .+-....   ..+  ..-.+++...++..++.|+.+     ..+.+||+.+..-....   . .... -.+++.. ++.+
T Consensus       215 ~~~~~~~---~~~--~~i~~l~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~-~~~~-i~~v~~s~~g~~  279 (337)
T d1gxra_         215 GRQLQQH---DFT--SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLH---L-HESC-VLSLKFAYCGKW  279 (337)
T ss_dssp             TEEEEEE---ECS--SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEEC---C-CSSC-EEEEEECTTSSE
T ss_pred             ceeeccc---ccc--cceEEEEEcccccccceeccc-----ccccccccccccccccc---c-cccc-cceEEECCCCCE
Confidence            7633222   111  111233333355566666644     45888998766543321   1 1111 1122222 4566


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      ++.|+.+     ..+.+||..+..=...  ....       ..+..+...+++.+++.||.++.    +.+||+
T Consensus       280 l~s~s~D-----g~i~iwd~~~~~~~~~--~~~~-------~~v~~~~~s~d~~~l~t~s~D~~----I~vWdl  335 (337)
T d1gxra_         280 FVSTGKD-----NLLNAWRTPYGASIFQ--SKES-------SSVLSCDISVDDKYIVTGSGDKK----ATVYEV  335 (337)
T ss_dssp             EEEEETT-----SEEEEEETTTCCEEEE--EECS-------SCEEEEEECTTSCEEEEEETTSC----EEEEEE
T ss_pred             EEEEeCC-----CeEEEEECCCCCEEEE--ccCC-------CCEEEEEEeCCCCEEEEEeCCCe----EEEEEE
Confidence            7777643     2477888876543221  1111       12233344455667777876653    556654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.46  E-value=0.24  Score=43.10  Aligned_cols=108  Identities=16%  Similarity=0.060  Sum_probs=52.6

Q ss_pred             ceEEEEccCCceee-eeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEE
Q 012184           16 VVMVFDLRSLAWSN-LRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG   92 (469)
Q Consensus        16 ~~~~~d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~   92 (469)
                      .+.++|..+.+=.. ++..                ..+...++++..  |..||+.|+..      ..+.+||+.+++..
T Consensus        12 ~v~v~D~~s~~~~~~i~~~----------------~~~~~~~~i~~spDg~~l~v~~~~~------~~v~v~D~~t~~~~   69 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIA----------------DAGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEETTTTEEEEEEECT----------------TCTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTCCEE
T ss_pred             EEEEEECCCCeEEEEEECC----------------CCCCCccEEEECCCCCEEEEEECCC------CeEEEEECCCCcEE
Confidence            78999999875322 2221                112222223322  45678876532      34999999998865


Q ss_pred             EeecCCCCCC-CCcceEEEEE--CCEEEEEeccCCC-----CCccCcEEEEECCCCeEEEe
Q 012184           93 VMETSGKVPV-ARGGHSVTLV--GSRLIIFGGEDRS-----RKLLNDVHFLDLETMTWDAV  145 (469)
Q Consensus        93 ~~~~~g~~p~-~r~~~~~~~~--~~~lyi~GG~~~~-----~~~~~~v~~~d~~t~~W~~~  145 (469)
                      .......... ....+.++..  +..+|+.+.....     ......+..+|..+..-...
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe
Confidence            4332111111 1111222222  2345544332110     11234577788887765443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.39  Score=42.32  Aligned_cols=187  Identities=16%  Similarity=0.080  Sum_probs=93.3

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      ++..++.|+.++      .+..||+..........   ++..........+  ++.+++.|+.+      ..+..+|+.+
T Consensus       108 dg~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEAS------TLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESSS------EEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEeeccc------ccccccccccccccccc---cccccccccccccccccccccccccc------cccccccccc
Confidence            556667776532      38888987766554431   1111112222223  34455555433      2488899888


Q ss_pred             CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184          140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  218 (469)
Q Consensus       140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  218 (469)
                      .+-..... +   ....-.++....++..+++|+.+     +.+.+||+.+.+-....   ...  ..-.+++.. ++.+
T Consensus       173 ~~~~~~~~-~---~~~~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~---~~~--~~i~~l~~~~~~~~  238 (337)
T d1gxra_         173 QTLVRQFQ-G---HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQH---DFT--SQIFSLGYCPTGEW  238 (337)
T ss_dssp             TEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE---ECS--SCEEEEEECTTSSE
T ss_pred             cccccccc-c---ccccccccccccccccccccccc-----ccccccccccceeeccc---ccc--cceEEEEEcccccc
Confidence            76544321 1   11111222222345566666644     45888998776532211   111  111233332 4556


Q ss_pred             EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      +++|+.+     ..+.+||+.+..-......         ...+..+...+++.+++.|+.++    .+.+||..+.
T Consensus       239 l~~~~~d-----~~i~i~d~~~~~~~~~~~~---------~~~i~~v~~s~~g~~l~s~s~Dg----~i~iwd~~~~  297 (337)
T d1gxra_         239 LAVGMES-----SNVEVLHVNKPDKYQLHLH---------ESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG  297 (337)
T ss_dssp             EEEEETT-----SCEEEEETTSSCEEEECCC---------SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC
T ss_pred             cceeccc-----ccccccccccccccccccc---------ccccceEEECCCCCEEEEEeCCC----eEEEEECCCC
Confidence            6666643     3578889877664432211         11222333445556677777654    4778887654

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.27  Score=40.13  Aligned_cols=155  Identities=8%  Similarity=0.010  Sum_probs=84.2

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCC---CCCCCCcceEEEEE--CCEEEEEeccCCCCCccC
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLN  130 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~  130 (469)
                      -+++.+++.+|+|-|..        +|+++.............   .+|... . ++...  ++++|+|-|.        
T Consensus        15 DAv~~~~G~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~glp~~I-D-AAf~~~~~~~~yfFkG~--------   76 (195)
T d1su3a2          15 DAITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNGL-E-AAYEFADRDEVRFFKGN--------   76 (195)
T ss_dssp             SEEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSSC-C-EEEEEGGGTEEEEEETT--------
T ss_pred             eEEEEcCCeEEEEeCCE--------EEEeeCCCCccCccchHhhCcCCCCcc-c-ceEEecCCcEEEEECCc--------
Confidence            47778899999997632        666665555443332211   123221 1 22223  4789999653        


Q ss_pred             cEEEEECCCCeE---EEeee-CCCCCCCCCCc-eEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe-----eeec
Q 012184          131 DVHFLDLETMTW---DAVEV-TQTPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK  199 (469)
Q Consensus       131 ~v~~~d~~t~~W---~~~~~-~g~~p~~r~~~-~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~  199 (469)
                      .+++|+-.+...   ..+.. .| +|.....- ++... .++++|+|-|       +..|+||..+..-..     +...
T Consensus        77 ~y~~y~~~~~~~g~p~~i~~~~G-~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~  148 (195)
T d1su3a2          77 KYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHD  148 (195)
T ss_dssp             EEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHH
T ss_pred             EEEEEcCCccccCCCccchhhcC-CCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCcccccccc
Confidence            377887432111   11110 02 22222222 23333 4679999988       578999987764321     1100


Q ss_pred             -CCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          200 -GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       200 -~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                       +..|. .. .||...++++|+|=|       +..|+||..+.+-..
T Consensus       149 w~Gvp~-~i-DAAf~~~g~~YfFkg-------~~y~r~~~~~~~v~~  186 (195)
T d1su3a2         149 FPGIGH-KV-DAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT  186 (195)
T ss_dssp             STTSCS-CC-SEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             cCCCCC-Cc-cEEEEECCeEEEEEC-------CEEEEEeCCcCEEEe
Confidence             11222 23 355566899999977       378999987766443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.94  E-value=0.53  Score=42.11  Aligned_cols=232  Identities=13%  Similarity=0.127  Sum_probs=113.2

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+..||..++++..+....+.                ...-.++.+  ++..++.||.+.      .+.++|+.++.|..
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH----------------~~~V~~l~fsp~~~~l~s~s~D~------~i~vWd~~~~~~~~   87 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEH----------------NGQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKP   87 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECC----------------SSCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCC----------------CCCEEEEEECCCCCEEEEEECCC------eEEEEeeccccccc
Confidence            688899999999887765311                111122222  455566666432      28888999999987


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE-cCcEEEE
Q 012184           94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIV  170 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~l~v  170 (469)
                      ....   ........++.+  ++..++.|+.+.    .-.++.++.....+.......   .-+..-..+.+ .++.+++
T Consensus        88 ~~~~---~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          88 TLVI---LRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKK---PIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             EEEC---CCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECT---TCCSCEEEEEECTTSSEEE
T ss_pred             cccc---ccccccccccccccccccceeecccC----cceeeeeeccccccccccccc---cccccccccccccccccee
Confidence            6532   222222333334  455666665432    234666666666665544221   11122222223 3555677


Q ss_pred             EecCCCCcccCcEEEEECCCCceEeeee---------cCCC-----CCCCcceEEEEE-CCEEEEEecCCCCCCcceEEE
Q 012184          171 FGGCSHSIFFNDLHVLDLQTNEWSQPEI---------KGDL-----VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIV  235 (469)
Q Consensus       171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~---------~~~~-----p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~  235 (469)
                      .|+.+.     .+.+||+..........         .+..     .....-++++.. ++..++.|+.+     ..+.+
T Consensus       158 s~s~D~-----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----~~i~i  227 (371)
T d1k8kc_         158 AGSCDF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCL  227 (371)
T ss_dssp             EEETTS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEE
T ss_pred             ccccCc-----EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----CcceE
Confidence            776553     46677765443221100         0000     001111222222 34566666643     35778


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCc
Q 012184          236 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP  300 (469)
Q Consensus       236 ~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~  300 (469)
                      +|+.+..=  +..+....      ..+..+...+++.+++.| .++  ...+|.++.....|...
T Consensus       228 wd~~~~~~--~~~~~~~~------~~v~s~~fs~d~~~la~g-~d~--~~~~~~~~~~~~~~~~~  281 (371)
T d1k8kc_         228 ADADKKMA--VATLASET------LPLLAVTFITESSLVAAG-HDC--FPVLFTYDSAAGKLSFG  281 (371)
T ss_dssp             EEGGGTTE--EEEEECSS------CCEEEEEEEETTEEEEEE-TTS--SCEEEEEETTTTEEEEC
T ss_pred             Eeeecccc--eeeeeccc------ccceeeeecCCCCEEEEE-cCC--ceEEEEeeCCCceEEEe
Confidence            88866542  22211111      111122223355776654 443  33577788776666533

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.5  Score=40.72  Aligned_cols=157  Identities=14%  Similarity=0.128  Sum_probs=77.9

Q ss_pred             eEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184           58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  137 (469)
Q Consensus        58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~  137 (469)
                      +...++..++.|+.++      .+..||+.+..-.....   ...  ....+....+.+++.|+.+      ..+.+||+
T Consensus       182 ~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~---~~~--~~v~~~~~~~~~l~s~s~d------~~i~iwd~  244 (342)
T d2ovrb2         182 SLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT---GHQ--SLTSGMELKDNILVSGNAD------STVKIWDI  244 (342)
T ss_dssp             EEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC---CCC--SCEEEEEEETTEEEEEETT------SCEEEEET
T ss_pred             cccCCCCEEEEEeCCC------eEEEeecccceeeeEec---ccc--cceeEEecCCCEEEEEcCC------CEEEEEec
Confidence            3344566666666443      28888988776444331   111  1122333444556666643      34889998


Q ss_pred             CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc-ceEEEEECC
Q 012184          138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA-GHAGITIDE  216 (469)
Q Consensus       138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~~~  216 (469)
                      .+.+-...-.  ..........+...+.+ +++.|+.+     ..|.+||+.+++...--.....+.... -.+++..++
T Consensus       245 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         245 KTGQCLQTLQ--GPNKHQSAVTCLQFNKN-FVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             TTCCEEEEEC--STTSCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             cccccccccc--ccceeeeceeecccCCC-eeEEEcCC-----CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            8776443321  11122222333444344 66777654     358899998876543111111111111 112333344


Q ss_pred             E-EEEEecCCCCCCcceEEEEECCC
Q 012184          217 N-WYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       217 ~-l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      . +++.|+.++ .....++++|+..
T Consensus       317 ~~~la~g~~dG-t~~~~l~~~Df~~  340 (342)
T d2ovrb2         317 KLVCAVGSRNG-TEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSS-SSCCEEEEEECCC
T ss_pred             CCEEEEEeCCC-CCeeEEEEEeCCC
Confidence            4 555555433 2334578888754

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.13  Score=41.99  Aligned_cols=156  Identities=11%  Similarity=0.079  Sum_probs=84.1

Q ss_pred             CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCC---CCCCCCcceEEEE-ECCEEEEEeccCCCCCccC
Q 012184           55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLN  130 (469)
Q Consensus        55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~  130 (469)
                      .-+++.+++.+|+|=|..        +|+++.....+.......   .+|.. ...+... .++.+|+|-|.        
T Consensus        11 ~DAv~~~~g~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~~lp~~-IDAAf~~~~~~~~yffkg~--------   73 (192)
T d1pexa_          11 LDAITSLRGETMIFKDRF--------FWRLHPQQVDAELFLTKSFWPELPNR-IDAAYEHPSHDLIFIFRGR--------   73 (192)
T ss_dssp             CSEEEEETTEEEEEETTE--------EEEECSSSSCCEEEEHHHHCTTSCSS-CCEEEEETTTTEEEEEETT--------
T ss_pred             EEEEEEcCCeEEEEECCE--------EEEEcCCCCCCcccchhhhCcCCCCc-ccceEEEcCCCEEEEEcCC--------
Confidence            336778899999996532        677765554444332210   12322 2222221 25788888653        


Q ss_pred             cEEEEECCCCeEE---EeeeCCCCCCCCCC-ceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe-----eeec-
Q 012184          131 DVHFLDLETMTWD---AVEVTQTPPAPRYD-HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-  199 (469)
Q Consensus       131 ~v~~~d~~t~~W~---~~~~~g~~p~~r~~-~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-  199 (469)
                      .+|+|+-.+....   .+...+ .|.+... -++... .++++|+|-|       +..|+||..++.-..     +... 
T Consensus        74 ~~w~y~~~~~~~gyPk~i~~~~-~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w  145 (192)
T d1pexa_          74 KFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDF  145 (192)
T ss_dssp             EEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHS
T ss_pred             EEEEEcCCcccCCCCeEeeeee-cCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcC
Confidence            3677775443321   221111 1222222 233333 3689999987       568899876654221     1100 


Q ss_pred             CCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          200 GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       200 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      +..| .+. .|+...++++|+|-|       +..|+||..+.+-.
T Consensus       146 ~gvp-~~v-dAa~~~~g~~YfF~g-------~~y~r~~~~~~~v~  181 (192)
T d1pexa_         146 PGIG-DKV-DAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV  181 (192)
T ss_dssp             TTSC-SCC-SEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred             CCCC-CCc-eEEEEeCCEEEEEEC-------CEEEEEeCCcCeEc
Confidence            1122 222 355566899999977       37889998776543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.71  E-value=0.58  Score=40.81  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=56.1

Q ss_pred             EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184          115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  194 (469)
                      .+++.|+.+.      .+.+||..+.+......  .  ....-.++....++.+++.|+.+     +.+.+||+.+..-.
T Consensus       160 ~~l~sgs~d~------~i~i~d~~~~~~~~~~~--~--~~~~i~~v~~~p~~~~l~~~~~d-----~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         160 FRIISGSDDN------TVAIFEGPPFKFKSTFG--E--HTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKT  224 (311)
T ss_dssp             CEEEEEETTS------CEEEEETTTBEEEEEEC--C--CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEE
T ss_pred             eeeccccccc------ccccccccccccccccc--c--ccccccccccCcccccccccccc-----cccccccccccccc
Confidence            4566666432      48889988876544321  1  11112233333355566667654     35788898766533


Q ss_pred             eeeecCCCCCCCcce----EEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          195 QPEIKGDLVTGRAGH----AGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       195 ~~~~~~~~p~~r~~~----~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      ..-  ........+|    ..+.+  ++..++.||.++     .+.+||+.+.+-.
T Consensus       225 ~~~--~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-----~v~iwd~~t~~~~  273 (311)
T d1nr0a1         225 GVF--EDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKVE  273 (311)
T ss_dssp             EEC--BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEE
T ss_pred             ccc--cccccccccccccccccccCCCCCEEEEEeCCC-----eEEEEECCCCcEE
Confidence            211  1111111111    12223  456777777532     5889999887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.70  E-value=0.58  Score=40.71  Aligned_cols=184  Identities=9%  Similarity=-0.086  Sum_probs=93.5

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+++||+.++.-+.....                  ...+..+..-++.+++...        +.+..||+.+++++.+.
T Consensus        41 ~I~r~d~~~g~~~~~~~~------------------~~~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          41 ELHELHLASGRKTVHALP------------------FMGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEECS------------------SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCeEEEEECC------------------CCcEEEEEecCCCEEEEEe--------CccEEeecccceeeEEe
Confidence            688889888876554432                  1112222334777776531        23999999999998886


Q ss_pred             cCC-CCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184           96 TSG-KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g-~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      ..- ..+..|.....+.-++.||+---....  ....-.+|.+..++.+.+..  .+  ...+..+....++.+|+..- 
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~--~~--~~~Ng~~~s~d~~~l~~~dt-  167 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA--DI--SIPNSICFSPDGTTGYFVDT-  167 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE--EE--SSEEEEEECTTSCEEEEEET-
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEee--cc--CCcceeeecCCCceEEEeec-
Confidence            321 112223333333335677664322211  23334455555666665542  11  11111122222445666542 


Q ss_pred             CCCcccCcEEEEECCCCc--e-----EeeeecCCCCCCCc-ceEEEEE-CCEEEEE--ecCCCCCCcceEEEEECCCCcE
Q 012184          175 SHSIFFNDLHVLDLQTNE--W-----SQPEIKGDLVTGRA-GHAGITI-DENWYIV--GGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       175 ~~~~~~~~i~~~d~~~~~--W-----~~~~~~~~~p~~r~-~~~~~~~-~~~l~v~--GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                          ..+.|++|++....  .     ..+.    .+.... ...++.- +++||+.  +|       ..+.+||+.....
T Consensus       168 ----~~~~I~~~~~d~~~~~~~~~~~~~~~----~~~~~g~pdG~~vD~~GnlWva~~~~-------g~V~~~dp~G~~~  232 (295)
T d2ghsa1         168 ----KVNRLMRVPLDARTGLPTGKAEVFID----STGIKGGMDGSVCDAEGHIWNARWGE-------GAVDRYDTDGNHI  232 (295)
T ss_dssp             ----TTCEEEEEEBCTTTCCBSSCCEEEEE----CTTSSSEEEEEEECTTSCEEEEEETT-------TEEEEECTTCCEE
T ss_pred             ----ccceeeEeeecccccccccceEEEec----cCcccccccceEEcCCCCEEeeeeCC-------CceEEecCCCcEe
Confidence                23678888875321  1     1111    111111 2233432 4678876  23       2689999987777


Q ss_pred             EEec
Q 012184          244 SILT  247 (469)
Q Consensus       244 ~~~~  247 (469)
                      ..+.
T Consensus       233 ~~i~  236 (295)
T d2ghsa1         233 ARYE  236 (295)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            6664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.59  E-value=1.1  Score=43.00  Aligned_cols=124  Identities=13%  Similarity=0.060  Sum_probs=71.4

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC-----CCCCCCcceEEEEECCEEEEEeccCCCCCc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-----KVPVARGGHSVTLVGSRLIIFGGEDRSRKL  128 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g-----~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~  128 (469)
                      .+=+++++.||+....       +.++.+|..|++  |+.-+...     .........+.+..+++||+...       
T Consensus        60 stPiv~~g~vyv~t~~-------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------  125 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (560)
T ss_dssp             CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             eCCEEECCEEEEECCC-------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------
Confidence            3446789999987542       459999999986  88532110     01122233456667888877532       


Q ss_pred             cCcEEEEECCCCe--EEEeeeCCCCCCCCCC-ceEEEEcCcEEEEEecCC-CCcccCcEEEEECCCCc--eEeee
Q 012184          129 LNDVHFLDLETMT--WDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNE--WSQPE  197 (469)
Q Consensus       129 ~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~-~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~--W~~~~  197 (469)
                      -..++.+|..+++  |+....  ........ .+..++ ++.+|+ |+.. .......|..||..|++  |..-.
T Consensus       126 ~g~l~Alda~tG~~~w~~~~~--~~~~~~~~~~~p~v~-~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         126 DGRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVV-KGKVII-GNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEE-TTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEECCCCcEEeccCcc--Ccccceeeeeeeeee-cCcccc-cccceeccccceEEEEECCCceEEeeeee
Confidence            2358999988874  655421  21222222 222333 664544 4432 22333579999999886  77643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.78  Score=40.75  Aligned_cols=200  Identities=15%  Similarity=0.102  Sum_probs=91.7

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  140 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~  140 (469)
                      ++.+++.|+.++      .+..+|..+........   ...... ..+... ++..++.|+.      ...+.++|..+.
T Consensus       132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~---~h~~~v-~~~~~~~~~~~~~~~~~------~~~i~~~d~~~~  195 (388)
T d1erja_         132 DGKFLATGAEDR------LIRIWDIENRKIVMILQ---GHEQDI-YSLDYFPSGDKLVSGSG------DRTVRIWDLRTG  195 (388)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSCE-EEEEECTTSSEEEEEET------TSEEEEEETTTT
T ss_pred             CCCcceeccccc------ccccccccccccccccc---cccccc-ccccccccccccccccc------ceeeeeeecccc
Confidence            556677776543      28889998887665541   111111 111212 3345555543      234888898887


Q ss_pred             eEEEeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeec-CCCCCC-Ccc-eEEEEE-C
Q 012184          141 TWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK-GDLVTG-RAG-HAGITI-D  215 (469)
Q Consensus       141 ~W~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~-~~~p~~-r~~-~~~~~~-~  215 (469)
                      ........     ......+... .++.+++.|+.+     +.+.+||..+......... ...... ... .+++.. +
T Consensus       196 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         196 QCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             cccccccc-----ccccccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            65544321     1111222222 245567777654     3588999887765432111 111111 111 122222 3


Q ss_pred             CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCC--C--CCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP--L--ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p--~--~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      +.+++.|+.+     ..+.+||+.+..-......+....  .  ......+..+...+++.+++.|+.++    .+.+||
T Consensus       266 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg----~i~vwd  336 (388)
T d1erja_         266 GQSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR----GVLFWD  336 (388)
T ss_dssp             SSEEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS----EEEEEE
T ss_pred             CCEEEEEECC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC----EEEEEE
Confidence            5566666643     246777775543221111000000  0  00011223333444566777787655    488888


Q ss_pred             CCCCC
Q 012184          292 LKPRD  296 (469)
Q Consensus       292 ~~~~~  296 (469)
                      +.+..
T Consensus       337 ~~~~~  341 (388)
T d1erja_         337 KKSGN  341 (388)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            86553

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=95.39  E-value=0.66  Score=39.38  Aligned_cols=94  Identities=17%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+.++|+.+++....-+.+                  ...+.++..  |.+||+.++..      +.+.+||+.++.-..
T Consensus        13 ~v~v~D~~t~~~~~~i~~g------------------~~p~~va~spdG~~l~v~~~~~------~~i~v~d~~t~~~~~   68 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVG------------------SNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIA   68 (301)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCeEEEEEECC------------------CCceEEEEeCCCCEEEEEECCC------CEEEEEECCCCceee
Confidence            6888999999866544432                  112333333  45788776533      349999999887543


Q ss_pred             eecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEE
Q 012184           94 METSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDA  144 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~  144 (469)
                      ....     ...-+.++.. ++ .+++.+. .     ...+.+++..+++...
T Consensus        69 ~~~~-----~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          69 TVPA-----GSSPQGVAVSPDGKQVYVTNM-A-----SSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEET-T-----TTEEEEEETTTTEEEE
T ss_pred             eeec-----ccccccccccccccccccccc-c-----cceeeecccccceeee
Confidence            3211     1122333333 23 4554432 2     2336667777765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.19  E-value=0.45  Score=42.65  Aligned_cols=155  Identities=16%  Similarity=0.142  Sum_probs=82.4

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  192 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  192 (469)
                      ++.++++|+.+      ..|.+||..++++..+........+  -.++....++.+++.||.+     ..+.++|+.+..
T Consensus        18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH~~~--V~~l~fsp~~~~l~s~s~D-----~~i~vWd~~~~~   84 (371)
T d1k8kc_          18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRT   84 (371)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSC--EEEEEEETTTTEEEEEETT-----SCEEEEEEETTE
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCCCCC--EEEEEECCCCCEEEEEECC-----CeEEEEeecccc
Confidence            45566677543      3488999999988776532111111  1223333355566667654     358889998888


Q ss_pred             eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc
Q 012184          193 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  271 (469)
Q Consensus       193 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~  271 (469)
                      |.......  ...+.-.++... ++..+++|+.++   .-.+|.++.....+.........      ...+..+...+++
T Consensus        85 ~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~~~~~~~~~------~~~v~~v~~~p~~  153 (371)
T d1k8kc_          85 WKPTLVIL--RINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPI------RSTVLSLDWHPNS  153 (371)
T ss_dssp             EEEEEECC--CCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTC------CSCEEEEEECTTS
T ss_pred             cccccccc--cccccccccccccccccceeecccC---cceeeeeeccccccccccccccc------ccccccccccccc
Confidence            88654221  111222233332 455666665432   23466666666655543322111      1123334445556


Q ss_pred             EEEEEeccCCCCCceEEEEECCCC
Q 012184          272 HLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       272 ~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      .+++.|+.++.    +.+||....
T Consensus       154 ~~l~s~s~D~~----v~v~~~~~~  173 (371)
T d1k8kc_         154 VLLAAGSCDFK----CRIFSAYIK  173 (371)
T ss_dssp             SEEEEEETTSC----EEEEECCCT
T ss_pred             cceeccccCcE----EEEEeeccC
Confidence            77788887653    566666543

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.46  Score=38.65  Aligned_cols=154  Identities=10%  Similarity=0.053  Sum_probs=81.1

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEE---eecC--CCCCCCCcceEEEE-ECCEEEEEeccCCCCCcc
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV---METS--GKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLL  129 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~---~~~~--g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~  129 (469)
                      -+++.+++.+|+|-|..        +|+|+........   +...  ..+|.. ...+... .++++|+|-|.       
T Consensus        10 DAv~~~~G~~y~Fkg~~--------ywr~~~~~~~~~~~P~~I~~~w~glp~~-IDAAf~~~~~~k~yfFkg~-------   73 (195)
T d1itva_          10 DAIAEIGNQLYLFKDGK--------YWRFSEGRGSRPQGPFLIADKWPALPRK-LDSVFEEPLSKKLFFFSGR-------   73 (195)
T ss_dssp             SEEEEETTEEEEEETTE--------EEEECCSSSCCCEEEEEHHHHCTTSCSS-CSEEEECTTTCCEEEEETT-------
T ss_pred             ceEEEeCCEEEEEECCE--------EEEEeCCCCCcCCCcEEeeeecCCCCCC-ccEEEEECCCCEEEEEecC-------
Confidence            45677899999996632        7777654333221   1111  013321 2222211 25689998543       


Q ss_pred             CcEEEEECCCCeE-EEeeeCCCCCCCCC-CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeec-CCC-C
Q 012184          130 NDVHFLDLETMTW-DAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK-GDL-V  203 (469)
Q Consensus       130 ~~v~~~d~~t~~W-~~~~~~g~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~-~~~-p  203 (469)
                       .+|+|+-..... +.+...| +|.... -.++....++++|+|-|       +..|+||..++.-..  +... ... .
T Consensus        74 -~~~~y~~~~~~~Pk~i~~~g-~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~g  144 (195)
T d1itva_          74 -QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPG  144 (195)
T ss_dssp             -EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred             -EEEEEcCccccCCEEhhhcC-CCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcCC
Confidence             377887332111 1222112 232222 23334445789999977       568999988765332  1100 001 1


Q ss_pred             CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCC
Q 012184          204 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  241 (469)
Q Consensus       204 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~  241 (469)
                      .|-.-.+|...++++|+|-|.       ..|+||..+.
T Consensus       145 vp~~idaAf~~~~~~Yffkg~-------~y~r~~~~~~  175 (195)
T d1itva_         145 VPLDTHDVFQFREKAYFCQDR-------FYWRVSSRSE  175 (195)
T ss_dssp             SCSSCSEEEEETTEEEEEETT-------EEEEEECCTT
T ss_pred             CCCCCcEEEEeCCcEEEEECC-------EEEEEcCCce
Confidence            222334566678999999773       6788887654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.10  E-value=1  Score=39.88  Aligned_cols=143  Identities=17%  Similarity=0.169  Sum_probs=63.0

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC-CCCCCC-C
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT-QTPPAP-R  155 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~-g~~p~~-r  155 (469)
                      .+..+|..+..-......   ..  ....++..  ++.+++.|+.+.      .+.+||..+......... ...... .
T Consensus       186 ~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~  254 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLSI---ED--GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHK  254 (388)
T ss_dssp             EEEEEETTTTEEEEEEEC---SS--CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCS
T ss_pred             eeeeeecccccccccccc---cc--ccccccccCCCCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCC
Confidence            378888887765544311   11  11222222  456677776442      488899888765433211 111111 1


Q ss_pred             CC-ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCC-------CCCCcc-eEEEEE-CCEEEEEecCC
Q 012184          156 YD-HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL-------VTGRAG-HAGITI-DENWYIVGGGD  225 (469)
Q Consensus       156 ~~-~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~-------p~~r~~-~~~~~~-~~~l~v~GG~~  225 (469)
                      .. .++....++..++.|+.+     +.+.+||+.+..-.........       ...... .+++.. ++.+++.|+.+
T Consensus       255 ~~v~~l~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d  329 (388)
T d1erja_         255 DSVYSVVFTRDGQSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD  329 (388)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred             CCEEEEEECCCCCEEEEEECC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC
Confidence            11 122222355566666654     3577888765443221100000       000111 122222 45666666643


Q ss_pred             CCCCcceEEEEECCCCcE
Q 012184          226 NNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       226 ~~~~~~d~~~~d~~~~~W  243 (469)
                           ..+.+||+.+.+-
T Consensus       330 -----g~i~vwd~~~~~~  342 (388)
T d1erja_         330 -----RGVLFWDKKSGNP  342 (388)
T ss_dssp             -----SEEEEEETTTCCE
T ss_pred             -----CEEEEEECCCCcE
Confidence                 3588899887653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.10  E-value=0.67  Score=39.54  Aligned_cols=112  Identities=12%  Similarity=0.079  Sum_probs=61.4

Q ss_pred             cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          164 ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       164 ~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      .++.+++.|+.+     ..+.+||+.+.....+....   ....-.+++.. ++..++.|+.+     ..+.+||+.+..
T Consensus       146 ~~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~  212 (299)
T d1nr0a2         146 NDKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNF  212 (299)
T ss_dssp             TTSCEEEEEETT-----SEEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTT
T ss_pred             cccccccccccc-----cccccccccccccccccccc---ccccccccccccccccccccccc-----cccccccccccc
Confidence            456677777654     46889998877665543211   11111223322 34566666543     258899987765


Q ss_pred             EEEe-ccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184          243 WSIL-TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       243 W~~~-~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~  298 (469)
                      .... ..+...      ...+..+...+++.+++.||.++    .+.+||+.+....
T Consensus       213 ~~~~~~~~~~h------~~~v~~l~~s~~~~~l~sgs~dg----~i~iwd~~~~~~~  259 (299)
T d1nr0a2         213 ELAHTNSWTFH------TAKVACVSWSPDNVRLATGSLDN----SVIVWNMNKPSDH  259 (299)
T ss_dssp             EESCCCCCCCC------SSCEEEEEECTTSSEEEEEETTS----CEEEEETTCTTSC
T ss_pred             ccccccccccc------ccccccccccccccceEEEcCCC----EEEEEECCCCCcc
Confidence            4322 111111      11233334455667778888765    4888998766544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.03  E-value=0.62  Score=40.45  Aligned_cols=54  Identities=6%  Similarity=0.078  Sum_probs=31.1

Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          231 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       231 ~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      +.+.+||+.+.+.........         ....+.+.+++..+.+||.++    ++.+||+.+..-
T Consensus       272 ~~v~v~d~~~~~~~~~~~~~~---------~~~~va~s~DG~~l~v~~~d~----~v~v~D~~t~~~  325 (346)
T d1jmxb_         272 NRLAKYDLKQRKLIKAANLDH---------TYYCVAFDKKGDKLYLGGTFN----DLAVFNPDTLEK  325 (346)
T ss_dssp             SEEEEEETTTTEEEEEEECSS---------CCCEEEECSSSSCEEEESBSS----EEEEEETTTTEE
T ss_pred             CeEEEEECCCCcEEEEEcCCC---------CEEEEEEcCCCCEEEEEeCCC----cEEEEECccCCE
Confidence            468899998887654332221         111233334444445566553    699999976543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.77  E-value=1.1  Score=38.86  Aligned_cols=196  Identities=10%  Similarity=0.029  Sum_probs=97.4

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      ++.||..--      ....+++||+.++.-+...    +|.. .+..+..-++.|++..        .+.+++||+.+++
T Consensus        29 ~~~l~wvDi------~~~~I~r~d~~~g~~~~~~----~~~~-~~~i~~~~dg~l~va~--------~~gl~~~d~~tg~   89 (295)
T d2ghsa1          29 SGTAWWFNI------LERELHELHLASGRKTVHA----LPFM-GSALAKISDSKQLIAS--------DDGLFLRDTATGV   89 (295)
T ss_dssp             TTEEEEEEG------GGTEEEEEETTTTEEEEEE----CSSC-EEEEEEEETTEEEEEE--------TTEEEEEETTTCC
T ss_pred             CCEEEEEEC------CCCEEEEEECCCCeEEEEE----CCCC-cEEEEEecCCCEEEEE--------eCccEEeecccce
Confidence            677877621      2234999999999866654    2222 2223333467777642        2349999999999


Q ss_pred             EEEeeeCCCCCCCCC-CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEE
Q 012184          142 WDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENW  218 (469)
Q Consensus       142 W~~~~~~g~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l  218 (469)
                      ++.+..... ..+.. ...+++..++.+|+-.- ........-.+|.+..++...+..  .  .... -..+..  ++.+
T Consensus        90 ~~~l~~~~~-~~~~~~~nd~~vd~~G~iw~~~~-~~~~~~~~g~l~~~~~g~~~~~~~--~--~~~~-Ng~~~s~d~~~l  162 (295)
T d2ghsa1          90 LTLHAELES-DLPGNRSNDGRMHPSGALWIGTM-GRKAETGAGSIYHVAKGKVTKLFA--D--ISIP-NSICFSPDGTTG  162 (295)
T ss_dssp             EEEEECSST-TCTTEEEEEEEECTTSCEEEEEE-ETTCCTTCEEEEEEETTEEEEEEE--E--ESSE-EEEEECTTSCEE
T ss_pred             eeEEeeeec-CCCcccceeeEECCCCCEEEEec-cccccccceeEeeecCCcEEEEee--c--cCCc-ceeeecCCCceE
Confidence            988763211 11111 12233334666766432 222223344555555666555431  1  1111 122222  3356


Q ss_pred             EEEecCCCCCCcceEEEEECCCCc------EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          219 YIVGGGDNNNGCQETIVLNMTKLA------WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       219 ~v~GG~~~~~~~~d~~~~d~~~~~------W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      |+..-     ....+|.|++....      .......+...      ...--++++.++.|+|..-.    ...+.+||+
T Consensus       163 ~~~dt-----~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~------g~pdG~~vD~~GnlWva~~~----~g~V~~~dp  227 (295)
T d2ghsa1         163 YFVDT-----KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK------GGMDGSVCDAEGHIWNARWG----EGAVDRYDT  227 (295)
T ss_dssp             EEEET-----TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS------SEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred             EEeec-----ccceeeEeeecccccccccceEEEeccCccc------ccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence            66532     23568888764221      11111111111      12223455666677765211    125899998


Q ss_pred             CCCCCC
Q 012184          293 KPRDIP  298 (469)
Q Consensus       293 ~~~~w~  298 (469)
                      +.....
T Consensus       228 ~G~~~~  233 (295)
T d2ghsa1         228 DGNHIA  233 (295)
T ss_dssp             TCCEEE
T ss_pred             CCcEee
Confidence            765443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=1.2  Score=38.70  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc-eEEEEc--CcEEEEEecCCCCcccCcEEEEECCCC
Q 012184          115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-SAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTN  191 (469)
Q Consensus       115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~  191 (469)
                      .+++.||.+.      .+.+||..+..-.....  . ....... ..+.+.  .+.+++.|+.+     +.+.+||+.++
T Consensus       173 ~~~~~~~~d~------~v~~~d~~~~~~~~~~~--~-~~~~~~~v~~v~~~pd~~~~l~s~~~d-----~~i~iwd~~~~  238 (325)
T d1pgua1         173 MRSMTVGDDG------SVVFYQGPPFKFSASDR--T-HHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSG  238 (325)
T ss_dssp             CEEEEEETTT------EEEEEETTTBEEEEEEC--S-SSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTC
T ss_pred             ceEEEeeccc------ccccccccccccceecc--c-ccCCCCccEEeeeccccceeccccccc-----cceeeeeeccc
Confidence            4555566432      37788877655433221  1 1121111 222332  34577777655     35889998877


Q ss_pred             ceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184          192 EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  244 (469)
Q Consensus       192 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  244 (469)
                      +....-.....+.....++....++..++.|+.++     .+.+||+.+++-.
T Consensus       239 ~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-----~i~iwd~~~~~~~  286 (325)
T d1pgua1         239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKCV  286 (325)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEEE
T ss_pred             cccccccccccccccceeeeeccCCCEEEEEeCCC-----eEEEEECCCCCEE
Confidence            65432111111222222333334667777777542     4778899887643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=1.2  Score=38.40  Aligned_cols=143  Identities=10%  Similarity=0.054  Sum_probs=73.0

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  141 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~  141 (469)
                      .+..++.|+.++      .+..||..++.......   ..  .....++.+++.+++.|+.++      .+.+||+.+..
T Consensus       212 ~~~~~~~~~~d~------~i~i~d~~~~~~~~~~~---~h--~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~  274 (355)
T d1nexb2         212 ERKRCISASMDT------TIRIWDLENGELMYTLQ---GH--TALVGLLRLSDKFLVSAAADG------SIRGWDANDYS  274 (355)
T ss_dssp             TTTEEEEEETTS------CEEEEETTTCCEEEEEC---CC--SSCCCEEEECSSEEEEECTTS------EEEEEETTTCC
T ss_pred             cceeeecccccc------eEEeeeccccccccccc---cc--cccccccccccceeeeeeccc------ccccccccccc
Confidence            445555555332      28889988876544331   11  112234456666777776543      48889988765


Q ss_pred             EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc-ceEEEEECCEEEE
Q 012184          142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA-GHAGITIDENWYI  220 (469)
Q Consensus       142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~~~~l~v  220 (469)
                      -......    .......+... ++.+++.| .+     +.+.+||+.+++.....    ...... -.+++..++.+++
T Consensus       275 ~~~~~~~----~~~~~~~~~~~-~~~~l~~g-~d-----~~i~vwd~~tg~~~~~~----~~~~~~~V~~v~~~~~~~~~  339 (355)
T d1nexb2         275 RKFSYHH----TNLSAITTFYV-SDNILVSG-SE-----NQFNIYNLRSGKLVHAN----ILKDADQIWSVNFKGKTLVA  339 (355)
T ss_dssp             EEEEEEC----TTCCCCCEEEE-CSSEEEEE-ET-----TEEEEEETTTCCBCCSC----TTTTCSEEEEEEEETTEEEE
T ss_pred             eeccccc----CCceEEEEEcC-CCCEEEEE-eC-----CEEEEEECCCCCEEEEE----ecCCCCCEEEEEEcCCeEEE
Confidence            3322111    12222233333 55455544 32     46889999887643211    111111 1234444666655


Q ss_pred             EecCCCCCCcceEEEEECC
Q 012184          221 VGGGDNNNGCQETIVLNMT  239 (469)
Q Consensus       221 ~GG~~~~~~~~d~~~~d~~  239 (469)
                      .|+.++.   .-+|++|.+
T Consensus       340 ~~s~dg~---~~l~~~dfs  355 (355)
T d1nexb2         340 AVEKDGQ---SFLEILDFS  355 (355)
T ss_dssp             EEESSSC---EEEEEEECC
T ss_pred             EEECCCc---EEEEEEeCC
Confidence            5554432   247888753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.35  E-value=0.19  Score=43.40  Aligned_cols=109  Identities=22%  Similarity=0.174  Sum_probs=56.6

Q ss_pred             CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184          114 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  193 (469)
Q Consensus       114 ~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  193 (469)
                      +.+++.|+.+      ..+.+||+.+.....+...+.   ...-.+++...++..++.|+.+     ..+.+||+.+...
T Consensus       148 ~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~  213 (299)
T d1nr0a2         148 KQFVAVGGQD------SKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNFE  213 (299)
T ss_dssp             SCEEEEEETT------SEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTTE
T ss_pred             cccccccccc------ccccccccccccccccccccc---cccccccccccccccccccccc-----ccccccccccccc
Confidence            4555566533      358889988887655442211   1111223333344456666543     3588999877655


Q ss_pred             EeeeecCCCCCCCcce-EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184          194 SQPEIKGDLVTGRAGH-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       194 ~~~~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      ....  .......... +++.. ++.+++.||.++     .+.+||+.+...
T Consensus       214 ~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~  258 (299)
T d1nr0a2         214 LAHT--NSWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSD  258 (299)
T ss_dssp             ESCC--CCCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTS
T ss_pred             cccc--ccccccccccccccccccccceEEEcCCC-----EEEEEECCCCCc
Confidence            4321  1111111111 22222 456777777543     478888876543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.17  E-value=1.5  Score=37.59  Aligned_cols=107  Identities=14%  Similarity=0.069  Sum_probs=56.6

Q ss_pred             CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184          165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW  243 (469)
Q Consensus       165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  243 (469)
                      ++.+++.|+.+     ..+.+||+.+..-...- . . ... .-.+++.. ++.+++.|+.++     .+.++|+.....
T Consensus       195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~-~-~-h~~-~i~~v~~~p~~~~l~s~s~d~-----~i~~~~~~~~~~  260 (340)
T d1tbga_         195 DTRLFVSGACD-----ASAKLWDVREGMCRQTF-T-G-HES-DINAICFFPNGNAFATGSDDA-----TCRLFDLRADQE  260 (340)
T ss_dssp             TSSEEEEEETT-----TEEEEEETTTTEEEEEE-C-C-CSS-CEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEE
T ss_pred             ccceeEEeecC-----ceEEEEECCCCcEEEEE-e-C-CCC-CeEEEEECCCCCEEEEEeCCC-----eEEEEeeccccc
Confidence            44466666543     35788888776533211 1 1 111 11122322 456777776432     467888877664


Q ss_pred             EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          244 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       244 ~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                      ........      ....+..+...+++.+++.|+.++    .+.+||+.+.
T Consensus       261 ~~~~~~~~------~~~~i~~~~~s~~~~~l~~g~~dg----~i~iwd~~~~  302 (340)
T d1tbga_         261 LMTYSHDN------IICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA  302 (340)
T ss_dssp             EEEECCTT------CCSCEEEEEECSSSCEEEEEETTS----CEEEEETTTC
T ss_pred             cccccccc------ccCceEEEEECCCCCEEEEEECCC----EEEEEECCCC
Confidence            43222111      122344445555667778888665    3888888654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=1.5  Score=37.60  Aligned_cols=172  Identities=12%  Similarity=0.057  Sum_probs=86.6

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  160 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~  160 (469)
                      +..+|..+.......   .............-.+..++.|+.+      ..+.+||..++.....-. + ..   ..-.+
T Consensus       183 i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~-~-h~---~~v~~  248 (355)
T d1nexb2         183 LIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMD------TTIRIWDLENGELMYTLQ-G-HT---ALVGL  248 (355)
T ss_dssp             EEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTCCEEEEEC-C-CS---SCCCE
T ss_pred             eeeeecccccceeee---eccccccccccccccceeeeccccc------ceEEeeeccccccccccc-c-cc---ccccc
Confidence            888899888765444   1122222222222244555566543      248889988876544321 1 11   11233


Q ss_pred             EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184          161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  240 (469)
Q Consensus       161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  240 (469)
                      +.+.++ .++.|+.+     ..+.++|+.+..-.....    ........+...++.+++.|. +     +.+.+||+.+
T Consensus       249 ~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~-d-----~~i~vwd~~t  312 (355)
T d1nexb2         249 LRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-E-----NQFNIYNLRS  312 (355)
T ss_dssp             EEECSS-EEEEECTT-----SEEEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEEE-T-----TEEEEEETTT
T ss_pred             cccccc-eeeeeecc-----cccccccccccceecccc----cCCceEEEEEcCCCCEEEEEe-C-----CEEEEEECCC
Confidence            445444 66666654     357888987665322111    111222233444666665543 2     3588999987


Q ss_pred             CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184          241 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  292 (469)
Q Consensus       241 ~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~  292 (469)
                      ++.... .+.+.      .-.+..+...+ +.+++.|+.++.  .-+|++|.
T Consensus       313 g~~~~~-~~~~~------~~~V~~v~~~~-~~~~~~~s~dg~--~~l~~~df  354 (355)
T d1nexb2         313 GKLVHA-NILKD------ADQIWSVNFKG-KTLVAAVEKDGQ--SFLEILDF  354 (355)
T ss_dssp             CCBCCS-CTTTT------CSEEEEEEEET-TEEEEEEESSSC--EEEEEEEC
T ss_pred             CCEEEE-EecCC------CCCEEEEEEcC-CeEEEEEECCCc--EEEEEEeC
Confidence            653211 11111      11222333444 467777776664  24777775

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.03  E-value=1.7  Score=37.88  Aligned_cols=173  Identities=12%  Similarity=-0.017  Sum_probs=85.9

Q ss_pred             eeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEE
Q 012184           56 HCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  134 (469)
Q Consensus        56 ~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~  134 (469)
                      +.++.. +++||+..-..  ......+..++..+.....+... ..+..+..-.++.-++.||+-.-..........+++
T Consensus        85 ~gla~~~dG~l~va~~~~--~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~  161 (319)
T d2dg1a1          85 AAIKIHKDGRLFVCYLGD--FKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY  161 (319)
T ss_dssp             EEEEECTTSCEEEEECTT--SSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred             eEEEECCCCCEEEEecCC--CccceeEEEEcCCCceeeeeccC-CCcccCCcceeEEeccceeecccccccccCcceeEE
Confidence            344333 67888863211  11234588888888876665421 112222222223335677765322222223566999


Q ss_pred             EECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCc---eEeeee-cCCCCCCCcce
Q 012184          135 LDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEI-KGDLVTGRAGH  209 (469)
Q Consensus       135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~-~~~~p~~r~~~  209 (469)
                      +++.......+..  .+..|   ..++.-. ++.||+.--     ..+.|++|++....   ...... ...........
T Consensus       162 ~~~dg~~~~~~~~--~~~~p---nGia~s~dg~~lyvad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~Pd  231 (319)
T d2dg1a1         162 VSPDFRTVTPIIQ--NISVA---NGIALSTDEKVLWVTET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD  231 (319)
T ss_dssp             ECTTSCCEEEEEE--EESSE---EEEEECTTSSEEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE
T ss_pred             EecccceeEEEee--cccee---eeeeeccccceEEEecc-----cCCceEEEEEcCCCceeccccceeeeccCCcccee
Confidence            9998877766542  11111   1233322 346888642     34679999876432   111000 00111111122


Q ss_pred             EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184          210 AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  246 (469)
Q Consensus       210 ~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~  246 (469)
                      .++.- +++|||..-.     ...+.+||+.-..-..+
T Consensus       232 Gl~vD~~G~l~Va~~~-----~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         232 SCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             EEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred             eeeEcCCCCEEEEEcC-----CCEEEEECCCCcEEEEE
Confidence            34433 5778887321     23789999865544444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.96  E-value=1.7  Score=37.67  Aligned_cols=167  Identities=11%  Similarity=0.032  Sum_probs=85.7

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      ++++|..++...++.   .  ..+  ...+.+  +++.++++|....    ..++++|..++....+..     ....-.
T Consensus        26 v~v~d~~~~~~~~~~---~--~~~--v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~-----~~~~v~   89 (360)
T d1k32a3          26 AFIQDVSGTYVLKVP---E--PLR--IRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEE-----NLGNVF   89 (360)
T ss_dssp             EEEECTTSSBEEECS---C--CSC--EEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCC-----CCCSEE
T ss_pred             EEEEECCCCcEEEcc---C--CCC--EEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeC-----CCceEE
Confidence            777788777776653   1  122  223334  5666666554321    248999999988776541     122223


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC-----CCcceE
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----NGCQET  233 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----~~~~d~  233 (469)
                      +++...+++.+++++.+     +.++.+++.+.....+..   .........+..-++..+++.+....     .....+
T Consensus        90 ~~~~spdg~~l~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          90 AMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             EEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eeeecccccccceeccc-----cccccccccccceeeeee---cccccccchhhccceeeeeeeccccccceeeccccce
Confidence            33333455566666543     458889988877554431   11111111222224555555443221     123457


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184          234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  280 (469)
Q Consensus       234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~  280 (469)
                      +++|+.+..=..+...         .+........+++..+++++.+
T Consensus       162 ~v~d~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~s~~  199 (360)
T d1k32a3         162 HVYDMEGRKIFAATTE---------NSHDYAPAFDADSKNLYYLSYR  199 (360)
T ss_dssp             EEEETTTTEEEECSCS---------SSBEEEEEECTTSCEEEEEESC
T ss_pred             eeeccccCceeeeccc---------ccccccccccCCCCEEEEEeCC
Confidence            8899887654333211         1222333344455555666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.68  E-value=2.8  Score=36.35  Aligned_cols=212  Identities=8%  Similarity=-0.013  Sum_probs=102.2

Q ss_pred             CCEEEEEccccCC-CCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKK-SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~-~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ++.||+....... ......++++|+.++.+..+......+..-.-++++.-  ++.+|+..+       .+.+.++++.
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~~~i~~~~~~  100 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQTD  100 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEETT
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------CCeEEEEeCC
Confidence            6788887432211 11234599999999998776521000111111233333  246777543       2348899988


Q ss_pred             CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC----------CcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH----------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  208 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~----------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  208 (469)
                      +.....+.........+.-..+++..++.||+..-...          ......+|++++.. ++..+..  .+..| .+
T Consensus       101 g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~--~~~~p-NG  176 (314)
T d1pjxa_         101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT--AFQFP-NG  176 (314)
T ss_dssp             SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE--EESSE-EE
T ss_pred             CcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC--Cccee-ee
Confidence            77654433221111112223455555678988632110          11234688888753 4544431  11111 11


Q ss_pred             eEEEEECC----EEEEEecCCCCCCcceEEEEECCCCc---EEE-eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184          209 HAGITIDE----NWYIVGGGDNNNGCQETIVLNMTKLA---WSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  280 (469)
Q Consensus       209 ~~~~~~~~----~l~v~GG~~~~~~~~d~~~~d~~~~~---W~~-~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~  280 (469)
                      -+....++    .||+..-     ....+++||+....   +.. ...++....     ...--++++.++.|||..-. 
T Consensus       177 i~~~~d~d~~~~~lyv~d~-----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-----~~pdGiavD~~GnlyVa~~~-  245 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAET-----PTKKLWSYDIKGPAKIENKKVWGHIPGTHE-----GGADGMDFDEDNNLLVANWG-  245 (314)
T ss_dssp             EEEEECTTSCEEEEEEEET-----TTTEEEEEEEEETTEEEEEEEEEECCCCSS-----CEEEEEEEBTTCCEEEEEET-
T ss_pred             eEECCCCCcceeEEEEEee-----cccceEEeeccCccccceeeEEEEcccccc-----ccceeeEEecCCcEEEEEcC-
Confidence            11111122    4666532     23578888864331   111 112221110     11223455666778876421 


Q ss_pred             CCCCceEEEEECCCCCCC
Q 012184          281 GKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       281 ~~~~~~~~~~d~~~~~w~  298 (469)
                         .+.+++||++.....
T Consensus       246 ---~g~I~~~dp~~g~~~  260 (314)
T d1pjxa_         246 ---SSHIEVFGPDGGQPK  260 (314)
T ss_dssp             ---TTEEEEECTTCBSCS
T ss_pred             ---CCEEEEEeCCCCEEE
Confidence               346999999876544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=2.9  Score=36.06  Aligned_cols=112  Identities=12%  Similarity=0.007  Sum_probs=58.4

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  138 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~  138 (469)
                      ++.+++.||.+.      .+..||..+..-.....  ........-.++.+   .+.+++.||.+.      .|.+||+.
T Consensus       171 ~~~~~~~~~~d~------~v~~~d~~~~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d~------~i~iwd~~  236 (325)
T d1pgua1         171 RPMRSMTVGDDG------SVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGK  236 (325)
T ss_dssp             SSCEEEEEETTT------EEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETT
T ss_pred             ccceEEEeeccc------ccccccccccccceecc--cccCCCCccEEeeeccccceecccccccc------ceeeeeec
Confidence            344566666432      37788887765433321  11111122223333   246777776543      38899998


Q ss_pred             CCeEEEeeeCCCCCCCCCCceE-EEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184          139 TMTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       139 t~~W~~~~~~g~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  194 (469)
                      +++....-. + ...+...... ....++..++.|+.+     ..+.+||+.+++-.
T Consensus       237 ~~~~~~~l~-~-~~~~v~~~~~s~~~~dg~~l~s~s~D-----~~i~iwd~~~~~~~  286 (325)
T d1pgua1         237 SGEFLKYIE-D-DQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCV  286 (325)
T ss_dssp             TCCEEEECC-B-TTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred             ccccccccc-c-cccccccceeeeeccCCCEEEEEeCC-----CeEEEEECCCCCEE
Confidence            887543221 1 1122222222 223455566777655     35889999887643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.02  E-value=1.7  Score=37.63  Aligned_cols=142  Identities=13%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME   95 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~   95 (469)
                      .+++||..++...+++..                  .+..+.+..-+++.++++|....    ..++.+|..++.-..+.
T Consensus        25 ~v~v~d~~~~~~~~~~~~------------------~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPEP------------------LRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             EEEEECTTSSBEEECSCC------------------SCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECC
T ss_pred             eEEEEECCCCcEEEccCC------------------CCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEee
Confidence            788899888877665321                  33222223336666666554332    23899999998877664


Q ss_pred             cCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184           96 TSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus        96 ~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                         ..+..  -..++.. +++.+++++.      ...++.++..+.....+...    .......++.-.++..+++.+.
T Consensus        83 ---~~~~~--v~~~~~spdg~~l~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          83 ---ENLGN--VFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERS----REAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             ---CCCCS--EEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEEC----SSSCCCCEEECTTSCEEEEEEE
T ss_pred             ---CCCce--EEeeeecccccccceecc------ccccccccccccceeeeeec----ccccccchhhccceeeeeeecc
Confidence               11111  1122222 4555555543      33488899988876555421    1111222333335555555543


Q ss_pred             CCC-----cccCcEEEEECCCCceE
Q 012184          175 SHS-----IFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       175 ~~~-----~~~~~i~~~d~~~~~W~  194 (469)
                      ...     .....++++|+.+..=.
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             ccccceeeccccceeeeccccCcee
Confidence            221     22345788898776543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.71  E-value=3.4  Score=35.09  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184          114 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  193 (469)
Q Consensus       114 ~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  193 (469)
                      +.+++.|+.+      ..+.+||+.+..-...-. + .  ...-.+++...++.+++.|+.+     ..+.++|+.....
T Consensus       196 ~~~~~~~~~d------~~v~i~d~~~~~~~~~~~-~-h--~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~  260 (340)
T d1tbga_         196 TRLFVSGACD------ASAKLWDVREGMCRQTFT-G-H--ESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQE  260 (340)
T ss_dssp             SSEEEEEETT------TEEEEEETTTTEEEEEEC-C-C--SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred             cceeEEeecC------ceEEEEECCCCcEEEEEe-C-C--CCCeEEEEECCCCCEEEEEeCC-----CeEEEEeeccccc
Confidence            3455555433      348888988876433211 1 0  1111223333355566777654     3578888876654


Q ss_pred             EeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc
Q 012184          194 SQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  271 (469)
Q Consensus       194 ~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~  271 (469)
                      ....   ...........+.+  ++.+++.|+.+     ..+.+||+.+..-.  ..+.+..      ..+..+...+++
T Consensus       261 ~~~~---~~~~~~~~i~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~--~~~~~H~------~~V~~l~~s~d~  324 (340)
T d1tbga_         261 LMTY---SHDNIICGITSVSFSKSGRLLLAGYDD-----FNCNVWDALKADRA--GVLAGHD------NRVSCLGVTDDG  324 (340)
T ss_dssp             EEEE---CCTTCCSCEEEEEECSSSCEEEEEETT-----SCEEEEETTTCCEE--EEECCCS------SCEEEEEECTTS
T ss_pred             cccc---ccccccCceEEEEECCCCCEEEEEECC-----CEEEEEECCCCcEE--EEEcCCC------CCEEEEEEeCCC
Confidence            4322   11122222222223  45667777643     25788998765432  2222211      123334445555


Q ss_pred             EEEEEeccCCC
Q 012184          272 HLVAFGGYNGK  282 (469)
Q Consensus       272 ~l~v~GG~~~~  282 (469)
                      .+++.||.++.
T Consensus       325 ~~l~s~s~Dg~  335 (340)
T d1tbga_         325 MAVATGSWDSF  335 (340)
T ss_dssp             SCEEEEETTSC
T ss_pred             CEEEEEccCCE
Confidence            66777887653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=91.23  E-value=3.4  Score=34.49  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      +..++............   +..  -+.++..  ++.+|+.+...    ..+.++++|+.+.+-...-+.+..  |   .
T Consensus       182 ~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~~~v~~~~~----~~~~v~v~D~~t~~~~~~~~~~~~--~---~  247 (301)
T d1l0qa2         182 ISVIDTVTNSVIDTVKV---EAA--PSGIAVNPEGTKAYVTNVDK----YFNTVSMIDTGTNKITARIPVGPD--P---A  247 (301)
T ss_dssp             EEEEETTTTEEEEEEEC---SSE--EEEEEECTTSSEEEEEEECS----SCCEEEEEETTTTEEEEEEECCSS--E---E
T ss_pred             cccccccceeeeecccc---cCC--cceeeccccccccccccccc----eeeeeeeeecCCCeEEEEEcCCCC--E---E
Confidence            66677777766555422   111  1222222  34666654321    245699999998875443222221  1   2


Q ss_pred             eEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEe
Q 012184          159 SAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  195 (469)
Q Consensus       159 ~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  195 (469)
                      .++.-.+ ++||+.++.+     +.|.+||+++++-..
T Consensus       248 ~va~spdg~~l~va~~~~-----~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         248 GIAVTPDGKKVYVALSFC-----NTVSVIDTATNTITA  280 (301)
T ss_dssp             EEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCEEEEEECCC-----CeEEEEECCCCeEEE
Confidence            3333334 4688876543     579999999987644

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=90.97  E-value=4  Score=34.54  Aligned_cols=116  Identities=14%  Similarity=0.218  Sum_probs=62.3

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCC--CcceEEEEECCEEEEEeccCC---------
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA--RGGHSVTLVGSRLIIFGGEDR---------  124 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~--r~~~~~~~~~~~lyi~GG~~~---------  124 (469)
                      .++-..++-||+.---+-....-+++.+-.-.-..|..+.    +|..  ......+.+++.||+||....         
T Consensus       338 pcvk~y~gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lr----fp~nvhhsnlpfakvgd~l~ifgsera~~ewe~gap  413 (516)
T d1v0ea1         338 PCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAP  413 (516)
T ss_dssp             EEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCC
T ss_pred             chhhhcCCEEEEEeccccCCCCCccceeccccccChhhcc----CCccccccCCChhhcCCeEEEecccccccccccCCC
Confidence            3455668999988533333334444555444455699886    3333  333456788999999986421         


Q ss_pred             CC----CccCcE-EEE-----ECCCCeEEEeeeC---CCCCCCCCCceEEEEcCcEE-EEEecCC
Q 012184          125 SR----KLLNDV-HFL-----DLETMTWDAVEVT---QTPPAPRYDHSAALHANRYL-IVFGGCS  175 (469)
Q Consensus       125 ~~----~~~~~v-~~~-----d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~~l-~v~GG~~  175 (469)
                      ..    .+-..+ -+.     +++.-+|-.+...   |..-..--+-..+.+.|+.| |||||.+
T Consensus       414 d~ry~~syprtf~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged  478 (516)
T d1v0ea1         414 DDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED  478 (516)
T ss_dssp             CCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECC
T ss_pred             ccccccCCCceEEEEEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCcc
Confidence            11    111111 122     3445678777531   22222222333344447766 6999964

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=3.1  Score=33.26  Aligned_cols=153  Identities=11%  Similarity=0.087  Sum_probs=76.1

Q ss_pred             EEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC---CCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEE
Q 012184          108 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT---QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLH  184 (469)
Q Consensus       108 ~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~  184 (469)
                      +++.+++.+|+|-|.        -+|+++.....+......   ..+|... ..+.....++.+|+|-|       +.+|
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~~I-DAAf~~~~~~~~yffkg-------~~~w   76 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNRI-DAAYEHPSHDLIFIFRG-------RKFW   76 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSSC-CEEEEETTTTEEEEEET-------TEEE
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCCcc-cceEEEcCCCEEEEEcC-------CEEE
Confidence            566788999999553        255555444333221111   1233322 22222224678999887       4678


Q ss_pred             EEECCCCceEeeeecCC--CCCCCcc-eEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEE-----EeccCCCCCC
Q 012184          185 VLDLQTNEWSQPEIKGD--LVTGRAG-HAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWS-----ILTSVKGRNP  254 (469)
Q Consensus       185 ~~d~~~~~W~~~~~~~~--~p~~r~~-~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~-----~~~~~~~~~p  254 (469)
                      +|+-.+...--+.....  .|.+-.. -++...  ++++|+|-|       +..|+||..+..-.     .+...-...|
T Consensus        77 ~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~gvp  149 (192)
T d1pexa_          77 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGIG  149 (192)
T ss_dssp             EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred             EEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCCCCC
Confidence            88755544321221111  1221111 133332  578999977       36899998765321     1111000111


Q ss_pred             CCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184          255 LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  295 (469)
Q Consensus       255 ~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~  295 (469)
                         ....+ ++..  ++.+|+|=|      +..|+||..++
T Consensus       150 ---~~vdA-a~~~--~g~~YfF~g------~~y~r~~~~~~  178 (192)
T d1pexa_         150 ---DKVDA-VYEK--NGYIYFFNG------PIQFEYSIWSN  178 (192)
T ss_dssp             ---SCCSE-EEEE--TTEEEEEET------TEEEEEETTTT
T ss_pred             ---CCceE-EEEe--CCEEEEEEC------CEEEEEeCCcC
Confidence               11112 2222  568888866      25788887554

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=90.90  E-value=4.1  Score=34.50  Aligned_cols=123  Identities=11%  Similarity=0.090  Sum_probs=68.4

Q ss_pred             CCCCCCCcCeeeEEECCEEEEEccccCCCCCcc-eEEEE-----ECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEe
Q 012184           47 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFI-----DLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFG  120 (469)
Q Consensus        47 ~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~-~~~~~-----d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~G  120 (469)
                      +..|.-..-|+.++++++-|..|=+.++-.... -+..|     +|....=++++..  .....+..++-.+++-||+.-
T Consensus       274 ~~i~~vte~hsfa~idn~~~avgyhn~dv~pr~lg~lyf~daf~sp~~fvrr~i~~~--y~~nasepcvk~y~gvlyl~t  351 (516)
T d1v0ea1         274 GLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE--YEPDASEPCIKYYDGVLYLIT  351 (516)
T ss_dssp             CSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG--GCTTEEEEEEEEETTEEEEEE
T ss_pred             cccceeeeeeeEEEEcCCceEEEeccCCcCcceeeEEEcccccCCccceeeeccchh--hcCCCCCchhhhcCCEEEEEe
Confidence            344777788999999999888876555432211 12222     2223333344321  112223344455689999885


Q ss_pred             ccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184          121 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  174 (469)
Q Consensus       121 G~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~  174 (469)
                      --......-+++++-.-....|..+....  ..-.+....+.+ ++.|||||..
T Consensus       352 rgt~~t~~gssl~~s~d~gq~w~~lrfp~--nvhhsnlpfakv-gd~l~ifgse  402 (516)
T d1v0ea1         352 RGTRGDRLGSSLHRSRDIGQTWESLRFPH--NVHHTTLPFAKV-GDDLIMFGSE  402 (516)
T ss_dssp             EESCTTSCCCEEEEESSTTSSCEEEECTT--CCCSSCCCEEEE-TTEEEEEEEC
T ss_pred             ccccCCCCCccceeccccccChhhccCCc--cccccCCChhhc-CCeEEEeccc
Confidence            33333334556666655667899886421  122333345666 4469999863

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.81  E-value=4  Score=34.30  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             EEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184          263 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  296 (469)
Q Consensus       263 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~  296 (469)
                      ..+...+++.+++.||.++.    +.+||+.+..
T Consensus       255 ~~l~~sp~~~~lasg~~Dg~----v~vWD~~~~~  284 (342)
T d1yfqa_         255 NSIEFSPRHKFLYTAGSDGI----ISCWNLQTRK  284 (342)
T ss_dssp             EEEEECTTTCCEEEEETTSC----EEEEETTTTE
T ss_pred             eeEEecCCccEEEEECCCCE----EEEEECCCCc
Confidence            34455566677888887764    8888887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.50  E-value=7.3  Score=36.77  Aligned_cols=114  Identities=16%  Similarity=0.117  Sum_probs=64.7

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++.+|..|++  |+.-+.....     ..   ............+..+++||+...       ...++.+|..|++  |
T Consensus        77 ~v~AlDa~tG~~lW~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~v~~~~~-------~g~l~Alda~tG~~~w  141 (560)
T d1kv9a2          77 RVIAVDAASGKELWRYDPEVAKV-----KA---RTSCCDAVNRGVALWGDKVYVGTL-------DGRLIALDAKTGKAIW  141 (560)
T ss_dssp             EEEEEETTTCCEEEEECCCCCGG-----GG---GGCTTCSCCCCCEEEBTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCCCEEEEECCCCCcc-----cc---ccccccccccCcceeCCeEEEEeC-------CCEEEEEECCCCcEEe
Confidence            78999999874  8754332110     00   001222334466677888888742       1239999999886  7


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  146 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~  146 (469)
                      +.... +..+......+-+++++.+|+ |+..........+..||..|++  |+.-.
T Consensus       142 ~~~~~-~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         142 SQQTT-DPAKPYSITGAPRVVKGKVII-GNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             EEECS-CTTSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             ccCcc-CcccceeeeeeeeeecCcccc-cccceeccccceEEEEECCCceEEeeeee
Confidence            65432 122222223344556777665 4433322234579999999875  76653

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=4.2  Score=32.71  Aligned_cols=153  Identities=10%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEE-EeecCC---CCCCCCcceEEEE-ECCEEEEEeccCCCCCccC
Q 012184           56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSG---KVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLN  130 (469)
Q Consensus        56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g---~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~  130 (469)
                      -+++.+++.+|+|=|.        .+|+++....... ......   .+|.. ...+... .++++|+|-|.        
T Consensus        16 DAv~~~~G~~y~Fkg~--------~~wr~~~~~~~~~~P~~I~~~w~glp~~-IdAA~~~~~~~~~yffkg~--------   78 (200)
T d1gena_          16 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAGN--------   78 (200)
T ss_dssp             SEEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCSC-CSEEEEETTTTEEEEEETT--------
T ss_pred             eEEEecCCeEEEEeCC--------EEEEEcCCCCCCCCcEehhhccCCCCCC-ceEEEEECCCCeEEEecCc--------
Confidence            4777789999999552        1666654433322 111111   12222 2222222 25678888553        


Q ss_pred             cEEEEECCCCeE---EEeeeCCCCCCCCCCc-eEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeec----
Q 012184          131 DVHFLDLETMTW---DAVEVTQTPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK----  199 (469)
Q Consensus       131 ~v~~~d~~t~~W---~~~~~~g~~p~~r~~~-~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~----  199 (469)
                      ..|+|+-.+...   +.+...| +|.....- ++... .++++|+|-|       +..|+||..++.-..  +...    
T Consensus        79 ~~~~y~~~~~~~gyPk~i~~~g-~p~~~~~iDAA~~~~~~g~~YfFkg-------~~y~ryd~~~~~vd~~yPk~I~~~w  150 (200)
T d1gena_          79 EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAW  150 (200)
T ss_dssp             EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHS
T ss_pred             eEEEEcCcccccCCCceehhcC-CCCCccceeeEEEECCCCeEEEEeC-------cEEEEeccccceeccCcceehhhcc
Confidence            367776332111   1111111 22222222 33333 4689999988       578999987765321  1100    


Q ss_pred             CCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          200 GDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       200 ~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      ..+|  ..-.+|...  ++++|+|=|       +..|+||..+..
T Consensus       151 ~gvp--~~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~  186 (200)
T d1gena_         151 NAIP--DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK  186 (200)
T ss_dssp             SSCC--SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred             CCCC--CCccEEEEecCCCEEEEEEC-------CEEEEEECCceE
Confidence            1122  223344443  578999977       367888876544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.49  E-value=4.9  Score=33.29  Aligned_cols=93  Identities=11%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          167 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       167 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      .+++.|+.+     +.+.++|+.+......- .+   ....-.+++.. ++.+++.||.+     ..+.+||+.+.+-  
T Consensus       218 ~~~~~~~~d-----~~i~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~--  281 (317)
T d1vyhc1         218 PFLLSGSRD-----KTIKMWDVSTGMCLMTL-VG---HDNWVRGVLFHSGGKFILSCADD-----KTLRVWDYKNKRC--  281 (317)
T ss_dssp             CEEEEEETT-----SEEEEEETTTTEEEEEE-EC---CSSCEEEEEECSSSSCEEEEETT-----TEEEEECCTTSCC--
T ss_pred             ceeEeccCC-----CEEEEEECCCCcEEEEE-eC---CCCCEEEEEECCCCCEEEEEECC-----CeEEEEECCCCcE--
Confidence            345555433     45788888877643321 11   11111222322 45666677643     3578888876531  


Q ss_pred             eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184          246 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  281 (469)
Q Consensus       246 ~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~  281 (469)
                      +..+....      ..+..+...+++.+++.||.++
T Consensus       282 ~~~~~~h~------~~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         282 MKTLNAHE------HFVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             CEEEECCS------SCEEEEEECSSSSCEEEEETTS
T ss_pred             EEEEcCCC------CCEEEEEEcCCCCEEEEEeCCC
Confidence            11111111      1223333445556677787665

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.47  E-value=5.3  Score=33.62  Aligned_cols=175  Identities=9%  Similarity=0.090  Sum_probs=89.3

Q ss_pred             eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184           80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  158 (469)
Q Consensus        80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~  158 (469)
                      .+..++.....+..+..    +.....+.+++- ++.+|+....      ...+.+|++....-....   ........+
T Consensus        94 ~i~~~~~~g~~~~~~~~----~~~~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g---~~~~~~~~~  160 (279)
T d1q7fa_          94 QIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFG---CSKHLEFPN  160 (279)
T ss_dssp             EEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEE---CTTTCSSEE
T ss_pred             ccccccccccceeecCC----CcccccceeccccCCcEEEEeec------cceeeEeccCCceeeccc---ccccccccc
Confidence            47888877666666642    112222233332 4578877542      345888887765544432   222223333


Q ss_pred             eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEE
Q 012184          159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLN  237 (469)
Q Consensus       159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d  237 (469)
                      .+++..++.+|+....     .+.+++||+.......+...+..   ...+.++.. +++|||.-..++    ..+.+|+
T Consensus       161 ~i~~d~~g~i~v~d~~-----~~~V~~~d~~G~~~~~~g~~g~~---~~P~giavD~~G~i~Vad~~~~----~~v~~f~  228 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNHNN----FNLTIFT  228 (279)
T ss_dssp             EEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECSSS----CEEEEEC
T ss_pred             eeeeccceeEEeeecc-----ccceeeeecCCceeeeecccccc---cCCcccccccCCeEEEEECCCC----cEEEEEC
Confidence            4444446788887653     35789999876655444322221   122233332 467888754321    1377888


Q ss_pred             CCCCcEE-Eec-cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          238 MTKLAWS-ILT-SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       238 ~~~~~W~-~~~-~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      ..- ++. .+. ......        ...+.+++++.|||..+     .+.+.+|+..
T Consensus       229 ~~G-~~~~~~~~~~~~~~--------p~~vav~~dG~l~V~~~-----n~~v~~fr~~  272 (279)
T d1q7fa_         229 QDG-QLISALESKVKHAQ--------CFDVALMDDGSVVLASK-----DYRLYIYRYV  272 (279)
T ss_dssp             TTS-CEEEEEEESSCCSC--------EEEEEEETTTEEEEEET-----TTEEEEEECS
T ss_pred             CCC-CEEEEEeCCCCCCC--------EeEEEEeCCCcEEEEeC-----CCeEEEEEee
Confidence            653 322 222 111111        12233455678887643     2346666543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.40  E-value=9  Score=36.20  Aligned_cols=122  Identities=14%  Similarity=0.078  Sum_probs=69.9

Q ss_pred             EEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCC-----CCCCCcceEEEEECCEEEEEeccCCCCCccCc
Q 012184           59 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGK-----VPVARGGHSVTLVGSRLIIFGGEDRSRKLLND  131 (469)
Q Consensus        59 ~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~-----~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~  131 (469)
                      +++++.||+....       +.++.+|..|++  |+.-+....     ........+.+..++++|+..       .-..
T Consensus        74 iv~~g~vyv~t~~-------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t-------~~g~  139 (573)
T d1kb0a2          74 VVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDGR  139 (573)
T ss_dssp             EEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTSE
T ss_pred             EEECCEEEEECCC-------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe-------cccc
Confidence            5779999987532       349999999997  876431100     111223345666788888652       1335


Q ss_pred             EEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC-CcccCcEEEEECCCCc--eEee
Q 012184          132 VHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH-SIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       132 v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~i~~~d~~~~~--W~~~  196 (469)
                      ++.+|..|++  |+.-...+....-....+.+++ ++.+| +|+... ......|..||..|++  |..-
T Consensus       140 l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVI-IGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             eeeeccccccceecccCccCCcceEEeecceEEE-eccEE-EeeccccccccceEEEEecCCccceeeee
Confidence            8899988875  7654321111111111222334 66454 454432 2334679999999876  8754

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.09  E-value=4.5  Score=32.27  Aligned_cols=102  Identities=15%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee----CCCCCCCCCCceEEEE-----cCcEEEEEecCCCCcccCcE
Q 012184          113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV----TQTPPAPRYDHSAALH-----ANRYLIVFGGCSHSIFFNDL  183 (469)
Q Consensus       113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~----~g~~p~~r~~~~~~~~-----~~~~l~v~GG~~~~~~~~~i  183 (469)
                      ++++|+|-|.        .+++|+-.+....-+.+    -..+|  ..--++...     .++++|+|-|       +..
T Consensus        59 ~~~~yfFkG~--------~yw~y~~~~~~~gyPk~i~~~~~glp--~~iDAA~~~~~~~~~~~~~yfFkg-------~~y  121 (192)
T d1qhua1          59 HTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIP--FPLDAAVECHRGECQDEGILFFQG-------NRK  121 (192)
T ss_dssp             TTEEEEEETT--------EEEEECC-------CEEHHHHSTTCC--SSCCEEEEECBBTBSSSEEEEEET-------TEE
T ss_pred             CCcEEEEeCC--------EEEEEeCCccccCCCcChHHhCCCCC--CCceEEEEccccccCCCeEEEEeC-------CeE
Confidence            5789999653        37788654433321111    01222  222233332     3678999987       568


Q ss_pred             EEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          184 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       184 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      |.||..+..=..   ..-...+... +++..++.+|+|-|       +..|+||..+..
T Consensus       122 w~yd~~~~~~~~---~~w~gip~~d-aA~~~~g~~YfFkg-------~~y~r~~~~~~~  169 (192)
T d1qhua1         122 WFWDLTTGTKKE---RSWPAVGNCT-SALRWLGRYYCFQG-------NQFLRFNPVSGE  169 (192)
T ss_dssp             EEEETTTTEEEE---ECCTTSCCCS-EEEEETTEEEEEET-------TEEEEECTTTCC
T ss_pred             EEEeCCCCCccc---ccccCcCCcc-eeEEeCCcEEEEEC-------CEEEEEcCCcce
Confidence            999988763111   0011122333 44556899999977       378899887754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=87.93  E-value=7.5  Score=33.44  Aligned_cols=230  Identities=11%  Similarity=0.020  Sum_probs=108.7

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV   93 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~   93 (469)
                      .+++||+.++.+.........             ...-..+.++..  ++.||+..+.       +.+.++|+.......
T Consensus        47 ~I~r~d~~~~~~~~~~~~~~~-------------~~~g~P~Gl~~~~dg~~l~vad~~-------~~i~~~~~~g~~~~~  106 (314)
T d1pjxa_          47 EILRIDLKTGKKTVICKPEVN-------------GYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTDGTFEEI  106 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEET-------------TEECCEEEEEECSSSSEEEEEETT-------TEEEEEETTSCEEEC
T ss_pred             EEEEEECCCCcEEEEECCccc-------------cCCCcceeEEEeCCCCEEEEEECC-------CeEEEEeCCCcEEEE
Confidence            689999999988766543211             111112333333  4567776432       238899988776554


Q ss_pred             eecCCCCCCCCcceEEEE-ECCEEEEEe--ccCC-------CCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE
Q 012184           94 METSGKVPVARGGHSVTL-VGSRLIIFG--GEDR-------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH  163 (469)
Q Consensus        94 ~~~~g~~p~~r~~~~~~~-~~~~lyi~G--G~~~-------~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~  163 (469)
                      +.........+.-..+++ -++.||+-.  +...       .......+|++++.. +...+..  .+..| .+-+....
T Consensus       107 ~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~--~~~~p-NGi~~~~d  182 (314)
T d1pjxa_         107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT--AFQFP-NGIAVRHM  182 (314)
T ss_dssp             CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE--EESSE-EEEEEEEC
T ss_pred             EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC--Cccee-eeeEECCC
Confidence            432111111111122222 246788752  1110       111244688888754 4444432  11111 11111111


Q ss_pred             cCc---EEEEEecCCCCcccCcEEEEECCCCc---eEeeeecCCCCCCC-cce-EEEEE-CCEEEEEecCCCCCCcceEE
Q 012184          164 ANR---YLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGR-AGH-AGITI-DENWYIVGGGDNNNGCQETI  234 (469)
Q Consensus       164 ~~~---~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r-~~~-~~~~~-~~~l~v~GG~~~~~~~~d~~  234 (469)
                      +++   .||+...     ..+.|++||+....   +..+..  ..+... ... .++.- +++|||..-.     .+.++
T Consensus       183 ~d~~~~~lyv~d~-----~~~~i~~~d~~~~g~~~~~~~~~--~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g~I~  250 (314)
T d1pjxa_         183 NDGRPYQLIVAET-----PTKKLWSYDIKGPAKIENKKVWG--HIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIE  250 (314)
T ss_dssp             TTSCEEEEEEEET-----TTTEEEEEEEEETTEEEEEEEEE--ECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEE
T ss_pred             CCcceeEEEEEee-----cccceEEeeccCccccceeeEEE--EccccccccceeeEEecCCcEEEEEcC-----CCEEE
Confidence            121   5776532     23678999865332   222111  111111 112 33332 5778886421     24799


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184          235 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       235 ~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      +||+........-.++...|      +  .++..+ .+.|||....+    +.+|+++..
T Consensus       251 ~~dp~~g~~~~~i~~p~~~~------t--~~afg~d~~~lyVt~~~~----g~i~~~~~~  298 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPFEKP------S--NLHFKPQTKTIFVTEHEN----NAVWKFEWQ  298 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCE------E--EEEECTTSSEEEEEETTT----TEEEEEECS
T ss_pred             EEeCCCCEEEEEEECCCCCE------E--EEEEeCCCCEEEEEECCC----CcEEEEECC
Confidence            99998765322112222221      2  222334 34788875433    468888864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.61  E-value=12  Score=35.35  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=65.9

Q ss_pred             ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184           16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C   91 (469)
Q Consensus        16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W   91 (469)
                      .++++|..|++  |+.-+.....     ..   ............++.+++||+...       ...++.+|..|++  |
T Consensus        88 ~v~AlDa~TG~~~W~~~~~~~~~-----~~---~~~~~~~~~~g~~~~~~~v~~~t~-------~g~l~alda~tG~~~W  152 (573)
T d1kb0a2          88 VVHAIDTRTGNRIWTYDPQIDRS-----TG---FKGCCDVVNRGVALWKGKVYVGAW-------DGRLIALDAATGKEVW  152 (573)
T ss_dssp             CEEEEETTTTEEEEEECCCCCGG-----GG---GGSSSCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCCCeEEEeCCCCCcc-----cc---cccccccccccceEECCcEEEEec-------ccceeeecccccccee
Confidence            78999999874  8754332110     00   000222334456777888887632       1238999999887  7


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184           92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  146 (469)
Q Consensus        92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~  146 (469)
                      +.-...+.........+.+++++.+| +|+..........|..||..|++  |+.-.
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         153 HQNTFEGQKGSLTITGAPRVFKGKVI-IGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             cccCccCCcceEEeecceEEEeccEE-EeeccccccccceEEEEecCCccceeeeee
Confidence            76542221111122233455677766 45544333345679999999975  87644

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.49  E-value=3.8  Score=34.71  Aligned_cols=107  Identities=14%  Similarity=0.028  Sum_probs=52.9

Q ss_pred             ceEEEEECCCCeEEE-eecCCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC-CC
Q 012184           79 MIVRFIDLETNLCGV-METSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-AP  154 (469)
Q Consensus        79 ~~~~~~d~~t~~W~~-~~~~g~~p~~r~~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p-~~  154 (469)
                      +.+.++|..+.+-.. ++..   .....-.+++.- + .++|+.|+.      .+.|.+||+.+++........... ..
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~---~~~~~~~~i~~spDg~~l~v~~~~------~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             CEEEEEECCCCeEEEEEECC---CCCCCccEEEECCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecCCCcccc
Confidence            458999999887433 3311   111111222222 3 467777643      345999999998865443221111 11


Q ss_pred             CCCceEEEEc-CcEEEEEecCCC------CcccCcEEEEECCCCceE
Q 012184          155 RYDHSAALHA-NRYLIVFGGCSH------SIFFNDLHVLDLQTNEWS  194 (469)
Q Consensus       155 r~~~~~~~~~-~~~l~v~GG~~~------~~~~~~i~~~d~~~~~W~  194 (469)
                      ...+.+.... ++++|+.+....      ....+.+..+|..+..-.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  128 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE
Confidence            1222333333 345555443211      112346778888776543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.47  E-value=6.6  Score=32.32  Aligned_cols=238  Identities=11%  Similarity=0.031  Sum_probs=114.7

Q ss_pred             ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEE-ECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184           16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM   94 (469)
Q Consensus        16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~   94 (469)
                      ++|++|+.++.-+++....                 .....-+.. -|.+|.+...... ......++.++..++...++
T Consensus        22 dl~~~d~~~g~~~~Lt~~~-----------------~~~~~p~~SPDG~~iaf~~~~~~-~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          22 DLWEHDLKSGSTRKIVSNL-----------------GVINNARFFPDGRKIAIRVMRGS-SLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTTCCEEEEECSS-----------------SEEEEEEECTTSSEEEEEEEEST-TCCEEEEEEEETTTTEEEEC
T ss_pred             cEEEEECCCCCEEEEecCC-----------------CcccCEEECCCCCEEEEEEeeCC-CCCceEEEEEEecCCceEEe
Confidence            7999999999888775542                 111111111 1556665543322 22345699999999999988


Q ss_pred             ecCCCCC-CCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEE
Q 012184           95 ETSGKVP-VARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF  171 (469)
Q Consensus        95 ~~~g~~p-~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~  171 (469)
                      ...+... ..+.......+  +++.+++.-..........++..+..+.......      .... .....-.++.++.+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~  156 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN------LGPA-THILFADGRRVIGR  156 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC------SCSC-SEEEEETTEEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec------CCcc-ceeeecCCCeEEEe
Confidence            6322111 11222223333  4454444333322223445666777766654432      1111 12223323334443


Q ss_pred             ecCCCCc------ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184          172 GGCSHSI------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  245 (469)
Q Consensus       172 GG~~~~~------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  245 (469)
                      .......      ..............-....     ............++.++.....   ....++|.+|+.+..-+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~d~~g~~~~~  228 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-----DMSTHVSSPVIVGHRIYFITDI---DGFGQIYSTDLDGKDLRK  228 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-----CCSSCCEEEEEETTEEEEEECT---TSSCEEEEEETTSCSCEE
T ss_pred             eccccceeeeeccCCcceeeeeccccceeecc-----CCccccceeeeeccccceeccc---ccccceEEEeCCCCceEE
Confidence            3322110      0111222222222222211     1112222233345666555432   224589999999888777


Q ss_pred             eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184          246 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK  301 (469)
Q Consensus       246 ~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~  301 (469)
                      +....        .+....+..++...+|..+|       ++|++|++++.-..+.
T Consensus       229 lt~~~--------~~~~~~~SpDG~~I~f~~~~-------~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         229 HTSFT--------DYYPRHLNTDGRRILFSKGG-------SIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             CCCCC--------SSCEEEEEESSSCEEEEETT-------EEEEECTTTCCEEECC
T ss_pred             eecCC--------CcccccCcCCCCEEEEEeCC-------EEEEEECCCCCEEEec
Confidence            65321        12223455665443333333       6999999887665443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.44  E-value=6.4  Score=32.10  Aligned_cols=188  Identities=15%  Similarity=0.194  Sum_probs=86.9

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEE
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD  136 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d  136 (469)
                      .++..++.+++.||.+.      .+..+++.++........    ............+.+...++       ...+.++|
T Consensus        59 ~~v~~~~~~l~s~s~D~------~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  121 (293)
T d1p22a2          59 LCLQYDERVIITGSSDS------TVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSK-------DRSIAVWD  121 (293)
T ss_dssp             EEEECCSSEEEEEETTS------CEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEET-------TSCEEEEE
T ss_pred             eeeecccceeecccccc------cccccccccccccccccc----cccccccccccccceeeccc-------ccceeEee
Confidence            34555777788877543      278888888876665522    11111122222334433322       22355666


Q ss_pred             CCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC
Q 012184          137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  216 (469)
Q Consensus       137 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  216 (469)
                      ..+..-.....  ..................++..++ +     ..+..+|+.+.+-...- .+    ..........++
T Consensus       122 ~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~s~-d-----~~i~~~d~~~~~~~~~~-~~----~~~~v~~~~~~~  188 (293)
T d1p22a2         122 MASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASG-D-----RTIKVWNTSTCEFVRTL-NG----HKRGIACLQYRD  188 (293)
T ss_dssp             CSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEET-T-----SEEEEEETTTCCEEEEE-EC----CSSCEEEEEEET
T ss_pred             ccccccccccc--cccccccccccceecccccccccC-C-----CceeeecCCCCcEEEEE-cc----cccccccccCCC
Confidence            65443111110  001111112222333444444332 2     45788888776543221 11    111112233345


Q ss_pred             EEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184          217 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  293 (469)
Q Consensus       217 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~  293 (469)
                      ..++.|+.++     .+.+||+.+..-.....  ....      .....  ..+...++.|+.++.    +.+||+.
T Consensus       189 ~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~------~v~~~--~~~~~~l~sg~~dg~----i~iwd~~  246 (293)
T d1p22a2         189 RLVVSGSSDN-----TIRLWDIECGACLRVLE--GHEE------LVRCI--RFDNKRIVSGAYDGK----IKVWDLV  246 (293)
T ss_dssp             TEEEEEETTS-----CEEEEETTTCCEEEEEC--CCSS------CEEEE--ECCSSEEEEEETTSC----EEEEEHH
T ss_pred             CeEEEecCCC-----EEEEEecccceeeeeec--ccce------eeeec--cccceEEEEEcCCCE----EEEEECC
Confidence            5666666432     47788887766544321  1110      11112  224456677776653    6777753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=86.86  E-value=7.9  Score=32.66  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCccCcEEEEECCC
Q 012184           62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET  139 (469)
Q Consensus        62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~~d~~t  139 (469)
                      +++.++.|+..      +.+.+||+.+++-....   ..|....-.+++.. + .++|+.+..      .+.++.||+.+
T Consensus         7 ~~~~l~~~~~~------~~v~v~D~~t~~~~~t~---~~~~~~~p~~l~~spDG~~l~v~~~~------~~~v~~~d~~t   71 (346)
T d1jmxb_           7 GHEYMIVTNYP------NNLHVVDVASDTVYKSC---VMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT   71 (346)
T ss_dssp             TCEEEEEEETT------TEEEEEETTTTEEEEEE---ECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred             CCcEEEEEcCC------CEEEEEECCCCCEEEEE---EcCCCCCcceEEECCCCCEEEEEECC------CCcEEEEeCcc
Confidence            56777776643      34999999999754322   22333322344433 3 357776543      34699999998


Q ss_pred             CeEEE
Q 012184          140 MTWDA  144 (469)
Q Consensus       140 ~~W~~  144 (469)
                      .+=..
T Consensus        72 ~~~~~   76 (346)
T d1jmxb_          72 CKNTF   76 (346)
T ss_dssp             TEEEE
T ss_pred             Ceeee
Confidence            86543

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.05  E-value=3.6  Score=29.33  Aligned_cols=29  Identities=7%  Similarity=0.240  Sum_probs=13.1

Q ss_pred             hhhhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184          374 NSRFREKIDEVNSTHSELSKELSSVQGQL  402 (469)
Q Consensus       374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l  402 (469)
                      ...++++++.+...++.++.++.+.+.-+
T Consensus        10 ~q~lq~el~~~~~q~~~le~q~~E~~~vl   38 (107)
T d1fxka_          10 FQQLQQQAQAISVQKQTVEMQINETQKAL   38 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444333

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.89  E-value=12  Score=33.69  Aligned_cols=122  Identities=7%  Similarity=-0.010  Sum_probs=65.5

Q ss_pred             EEEEcCcEEEEEecCCCCcccCcEEEEECCC---CceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184          160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQT---NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  236 (469)
Q Consensus       160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~---~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  236 (469)
                      .+...++.+|+.-..+.  ....+...++..   ..|+.+-.  ..........+...++.|++.-=   .+....+.++
T Consensus       292 ~~~~~~~~~~~~Tn~~a--~~~~L~~~~~~~~~~~~w~~vi~--~~~~~~~~~~~~~~~~~lvl~~~---~~~~~~l~v~  364 (430)
T d1qfma1         292 YVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVP--EHEKDVLEWVACVRSNFLVLCYL---HDVKNTLQLH  364 (430)
T ss_dssp             EEEEETTEEEEEECTTC--TTCEEEEEETTBCCGGGCEEEEC--CCSSCEEEEEEEETTTEEEEEEE---ETTEEEEEEE
T ss_pred             EEecCCceeecccCccc--ccceeEEecCCCCccccceEEec--ccCcceeeeEEEEECCEEEEEEE---cCCEeEEEEE
Confidence            34444667888765432  234577777653   45887641  11112222233344666654421   1235689999


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEE-EEeccCCCCCceEEEEECCCCCCC
Q 012184          237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLV-AFGGYNGKYNNEVFVMRLKPRDIP  298 (469)
Q Consensus       237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~-v~GG~~~~~~~~~~~~d~~~~~w~  298 (469)
                      ++..+.|..+...+.        .++..+.... .+.++ .+.++..  ...+|.||+.++...
T Consensus       365 ~~~~~~~~~~~~~~~--------~sv~~~~~~~~~~~~~~~~ss~~t--P~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         365 DLATGALLKIFPLEV--------GSVVGYSGQKKDTEIFYQFTSFLS--PGIIYHCDLTKEELE  418 (430)
T ss_dssp             ETTTCCEEEEECCCS--------SEEEEEECCTTCSEEEEEEECSSC--CCEEEEEETTSSSCC
T ss_pred             ECCCCcEEEecCCCC--------ceEeeccCCCCCCEEEEEEcCCCC--CCeEEEEECCCCCcc
Confidence            999999988743211        1233232222 33333 3444332  567999999877653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.69  E-value=9.9  Score=32.61  Aligned_cols=123  Identities=11%  Similarity=-0.026  Sum_probs=62.4

Q ss_pred             EEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEE
Q 012184           59 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLD  136 (469)
Q Consensus        59 ~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d  136 (469)
                      +.-++.||+-.-..........++++++.......+...  +..+   .+++.-  ++.||+.--      ..+.|++|+
T Consensus       137 ~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~~p---nGia~s~dg~~lyvad~------~~~~I~~~d  205 (319)
T d2dg1a1         137 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVA---NGIALSTDEKVLWVTET------TANRLHRIA  205 (319)
T ss_dssp             ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSE---EEEEECTTSSEEEEEEG------GGTEEEEEE
T ss_pred             EEeccceeecccccccccCcceeEEEecccceeEEEeec--ccee---eeeeeccccceEEEecc------cCCceEEEE
Confidence            333677777532211222455699999988877766521  1111   122222  346887632      356799998


Q ss_pred             CCCCe---EEEeee-CCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184          137 LETMT---WDAVEV-TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  197 (469)
Q Consensus       137 ~~t~~---W~~~~~-~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  197 (469)
                      +....   ...... .........-..+++..++.|||..-.     .+.|.+||+....-..+.
T Consensus       206 ~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----~g~V~~~~p~G~~l~~i~  265 (319)
T d2dg1a1         206 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQIL  265 (319)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEEE
T ss_pred             EcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----CCEEEEECCCCcEEEEEe
Confidence            75431   111100 001111111234555557779886422     256999998655444443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.59  E-value=17  Score=34.24  Aligned_cols=125  Identities=9%  Similarity=0.079  Sum_probs=68.5

Q ss_pred             eeEEECCEEEEEccccCCCCCcceEEEEEC-CCCe--EEEeecCCC-----CCCCCcceEEEEECCEEEEEeccCCCCCc
Q 012184           57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETNL--CGVMETSGK-----VPVARGGHSVTLVGSRLIIFGGEDRSRKL  128 (469)
Q Consensus        57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~g~-----~p~~r~~~~~~~~~~~lyi~GG~~~~~~~  128 (469)
                      +=+++++.||+..+..      +.++.+|. .|++  |+.-+....     ........+++..+++||+-.       .
T Consensus        57 tP~v~~g~vyv~t~~~------~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~-------~  123 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-------A  123 (571)
T ss_dssp             CCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------T
T ss_pred             CCEEECCEEEEecCCC------CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe-------C
Confidence            3457799999985421      23899997 4564  876431110     001111224566788888642       1


Q ss_pred             cCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184          129 LNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       129 ~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  196 (469)
                      ...++.+|..|++  |..-.. ...+......+-+++ ++.+|+-+..........|..||..|++  |...
T Consensus       124 ~g~l~alda~tG~~~w~~~~~-~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         124 NGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCcEEeeehhhhhhhcccccc-ccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            3458999999885  755321 011111111222344 6656654332222345679999999876  8653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.52  E-value=12  Score=32.47  Aligned_cols=71  Identities=7%  Similarity=-0.017  Sum_probs=37.4

Q ss_pred             CCEEEEEec---CCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184          215 DENWYIVGG---GDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  291 (469)
Q Consensus       215 ~~~l~v~GG---~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d  291 (469)
                      ++.+|+..-   .......+.++++|..+.+  .+..++...    . .....+..+++..+|+.+..+    +.+++||
T Consensus       275 ~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~~~----~-~~~~a~spDG~~~ly~s~~~~----~~v~v~D  343 (368)
T d1mdah_         275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNGH----D-SDAIIAAQDGASDNYANSAGT----EVLDIYD  343 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEEE----E-ECEEEECCSSSCEEEEEETTT----TEEEEEE
T ss_pred             CCEEEEEecCCCceeecCCceEEEEECCCCc--EeEEecCCC----c-eeEEEECCCCCEEEEEEeCCC----CeEEEEE
Confidence            456666532   1222334679999998875  222222100    0 111222233344677777643    4699999


Q ss_pred             CCCCC
Q 012184          292 LKPRD  296 (469)
Q Consensus       292 ~~~~~  296 (469)
                      ..+.+
T Consensus       344 ~~tgk  348 (368)
T d1mdah_         344 AASDQ  348 (368)
T ss_dssp             SSSCE
T ss_pred             CCCCC
Confidence            97764

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=6.3  Score=31.42  Aligned_cols=109  Identities=12%  Similarity=0.092  Sum_probs=55.7

Q ss_pred             EEEEECCEEEEEeccCCCCCccCcEEEEECCCCeE-EEeee----CCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccC
Q 012184          108 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEV----TQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFN  181 (469)
Q Consensus       108 ~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W-~~~~~----~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~  181 (469)
                      +++.+++.+|+|-|.        ..|+|+...... ..+..    -..+|..  -=++... .++++|+|-|       +
T Consensus        11 Av~~~~G~~y~Fkg~--------~ywr~~~~~~~~~~~P~~I~~~w~glp~~--IDAAf~~~~~~k~yfFkg-------~   73 (195)
T d1itva_          11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------R   73 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET-------T
T ss_pred             eEEEeCCEEEEEECC--------EEEEEeCCCCCcCCCcEEeeeecCCCCCC--ccEEEEECCCCEEEEEec-------C
Confidence            456788999999653        255565332221 11111    0123322  1222222 2678999977       4


Q ss_pred             cEEEEECCCCceEeeeecCC--CCC--CCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184          182 DLHVLDLQTNEWSQPEIKGD--LVT--GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  242 (469)
Q Consensus       182 ~i~~~d~~~~~W~~~~~~~~--~p~--~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  242 (469)
                      .+|+|+-.  +...+.....  +|.  .+...+...-++++|+|=|       +..|+||..++.
T Consensus        74 ~~~~y~~~--~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~  129 (195)
T d1itva_          74 QVWVYTGA--SVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQM  129 (195)
T ss_dssp             EEEEEETT--EEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTE
T ss_pred             EEEEEcCc--cccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCccc
Confidence            67888733  2222221111  222  2222222223578999977       368999987764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=83.50  E-value=12  Score=31.78  Aligned_cols=57  Identities=9%  Similarity=0.019  Sum_probs=30.1

Q ss_pred             cceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184          230 CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  297 (469)
Q Consensus       230 ~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w  297 (469)
                      .+.++++|+.+.+=..  .++...    ... ...+..++...+|+.++.+    +.+++||..+.+.
T Consensus       279 ~~~v~v~d~~t~~~~~--~~~~~~----~~~-~~a~spDG~~~l~v~~~~d----~~i~v~D~~tg~~  335 (355)
T d2bbkh_         279 SRFVVVLDAKTGERLA--KFEMGH----EID-SINVSQDEKPLLYALSTGD----KTLYIHDAESGEE  335 (355)
T ss_dssp             EEEEEEEETTTCCEEE--EEEEEE----EEC-EEEECCSSSCEEEEEETTT----TEEEEEETTTCCE
T ss_pred             CCeEEEEeCCCCcEEE--EecCCC----CEE-EEEEcCCCCeEEEEEECCC----CEEEEEECCCCCE
Confidence            4578999998765322  111100    011 1222223333466766644    3699999977653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.26  E-value=12  Score=35.25  Aligned_cols=125  Identities=14%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             eEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC--CCC-CCCcceEEEEECCEEEEEeccCCCCCccCcE
Q 012184           58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG--KVP-VARGGHSVTLVGSRLIIFGGEDRSRKLLNDV  132 (469)
Q Consensus        58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g--~~p-~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v  132 (469)
                      -+++++.||+...       .+.++.+|..|++  |+.-....  ..+ .....-+.+..+++||+.-       ....+
T Consensus        64 Piv~~g~vy~~t~-------~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t-------~~~~l  129 (582)
T d1flga_          64 AIVSDGVIYVTAS-------YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-------LDASV  129 (582)
T ss_dssp             CEEETTEEEEEET-------TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-------TTTEE
T ss_pred             CEEECCEEEEeCC-------CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEec-------CCCeE
Confidence            3677999998754       2349999999887  87543110  011 1112234556788887642       23358


Q ss_pred             EEEECCCC--eEEEeeeCCCCCCCCCCceEEEEcC--cEEEEEecCCCC--cccCcEEEEECCCCc--eEee
Q 012184          133 HFLDLETM--TWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHS--IFFNDLHVLDLQTNE--WSQP  196 (469)
Q Consensus       133 ~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~v~GG~~~~--~~~~~i~~~d~~~~~--W~~~  196 (469)
                      +.+|..|+  .|+.................+..+.  ..++++.|....  .....+..||..+++  |...
T Consensus       130 ~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         130 VALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             EEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence            99999988  5765431100011122222232211  234444444332  223568899988775  7654