Citrus Sinensis ID: 012211

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRCSSRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVREPLSNQQ
ccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHccccccEEEEEcccccccHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHccccccccEEEEcccccccEEEEEEEccccEEEEccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHcccEEEEcccccccccccccccccHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccHHHHHHccccEEEEEccEEcccccccccHHHHHHHHHHHHHHHHHccccccccccc
ccccccccccccEEcccccccccHcccccccccHHHHHccccccccccHHHcccHcccccEEEEEEcccHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEEccccEEEEcccccccccccccEEcccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHccEEEEccccHHHcHHHHHcHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHccccccccHHHHHHccccEEEEEcEEEcccccEEccHHHHHHHHHHHHHHHHHHHcccccHccc
madsllgpsisftFTLTFTRHLLFEkrkirprcssrksltksmsaathcrcfsnpthtqpsllvfsggtafNGVVEELKNITTRVAhvlpvsddggstAEIVRVLggpavgdirsrclrlsdestPEALAVRRLLghrlplhpqqaksewynivegehslwkgvskPYRETIRAFLSYFQNEIlrrpnesfcfsngsignfffAGARVFFQSLDAAIFLFSrvsdipsesqvlpvistndrltlgcelgdgtvirgqneishptngsmepvkkersavpalpsriKRVFYMSsegsnllhevfptansavldqLNAVDCIIYAMGSLFTSICPSLVLLGIgeiissrscpkVLLLngledretsgfsaSCFVTAITDALNraygdpqkslknspsqyintilvpedgeipldIQCLASQGIFDVITVhsicdpkvgiifdpKSLIQAIADLLGRHmkttvreplsnqq
madsllgpsisftftLTFTrhllfekrkirprcssrksltksmSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVlpvsddggstAEIVRVlggpavgdIRSRCLRLSDESTPEALAVRRLLGHRlplhpqqaksewynIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVirgqneishptngsmepvkkersavpalpsrIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGdpqkslknspsqYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKttvreplsnqq
MADSLLGPSISftftltftrhllfEKRKIRPRCSSRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVrrllghrlplhpQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVREPLSNQQ
*******PSISFTFTLTFTRHLLFEKRKI****************ATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSD***PEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIR*****************************IKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYG***********QYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRH*************
**DSLLGPSISFTFTLTFTRHLLFEKR**********************************LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSM**************SRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMK***********
MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRC************ATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPT**************PALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTV********
***SLLGPSISFTFTLTFTRHLLFEKRKIRP***SRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVREPL****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRCSSRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVREPLSNQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query468 2.2.26 [Sep-21-2011]
P53980444 Uncharacterized protein Y yes no 0.724 0.763 0.333 1e-51
Q9K706322 UPF0052 protein BH3568 OS yes no 0.504 0.732 0.25 1e-13
O06974317 UPF0052 protein YvcK OS=B yes no 0.551 0.813 0.252 3e-11
Q97LP2451 UPF0052 protein CA_C0512 yes no 0.504 0.523 0.253 6e-11
P38541323 UPF0052 protein in amyB 5 N/A no 0.504 0.730 0.258 6e-09
Q55575462 UPF0052 protein sll0154 O N/A no 0.420 0.426 0.260 6e-08
P58588322 UPF0052 protein lmo2473 O yes no 0.386 0.562 0.279 6e-08
Q9RUF1467 UPF0052 protein DR_1435 O yes no 0.256 0.256 0.321 8e-07
Q97PN8325 UPF0052 protein SP_1565 O yes no 0.559 0.806 0.230 1e-06
O66974328 UPF0052 protein aq_778 OS yes no 0.482 0.689 0.232 2e-06
>sp|P53980|YNB1_YEAST Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1 Back     alignment and function desciption
 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/420 (33%), Positives = 206/420 (49%), Gaps = 81/420 (19%)

Query: 61  SLLVFSGGTAFNGVVEELKNITTRVAH----VLPVSDDGGSTAEIVRVLGGPAVGDIRSR 116
           +++V SGGTA N +     NI+    H    +LP+SD+GGST+EI+R++GGPA+GDIRSR
Sbjct: 2   NVVVCSGGTATNSLTPCFSNISILKGHELTYILPISDNGGSTSEILRIVGGPAIGDIRSR 61

Query: 117 CLRL-SDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAF 175
            +RL  DE   E      L GHRLP     AK EW  IVEG H +WK +S   +E  R+F
Sbjct: 62  IVRLLQDEQLVE------LFGHRLPNDKLLAKKEWNEIVEGSHPIWKNISIEVKEMCRSF 115

Query: 176 LSYFQNEILRRPNES--FCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVL 233
           + + Q E+L++   S  F F + SIGNFF  GAR+F  SLDA+I L  R+        V+
Sbjct: 116 IIHMQAELLKKIKHSNPFQFESASIGNFFLTGARLFLGSLDASIELMMRIGRCSPLVHVI 175

Query: 234 PVISTNDRLTLGCELGDGTVIRGQ-------------NEISHPT---------------- 264
           P I+TN    +   L +G +I GQ             N I+H                  
Sbjct: 176 PCINTNHTHHISALLTNGEMITGQSQISHPSKSVPKDNSIAHSAKFIHLLGSYDDHLKIL 235

Query: 265 -----------------------NGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301
                                  N  +   K + S    LP+ + R+ Y++  G     E
Sbjct: 236 LDDEEEEAEEEYANPIYILPELKNSQLHFDKLDESQ--NLPAPVHRILYINPYGE----E 289

Query: 302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLLLNGLED 360
           + P  N   + ++   D ++Y++GSL TS+ P L+L  + E+I  S +  KVLL+N   D
Sbjct: 290 IKPMGNPRAISKVKKADMVVYSIGSLMTSLLPILILGNLAEVILESNNTKKVLLINNKYD 349

Query: 361 RETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQ--------YINTILVPEDGEIPLD 412
           RE  G     +V  I D+++RA    ++S K   S+        +I  I+  ++GEI +D
Sbjct: 350 REVFGLDGLHYVQMIIDSMSRAIAGYRQS-KGVHSENDDFEWQDFITDIVYLKNGEIEID 408

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q9K706|Y3568_BACHD UPF0052 protein BH3568 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH3568 PE=1 SV=1 Back     alignment and function description
>sp|O06974|YVCK_BACSU UPF0052 protein YvcK OS=Bacillus subtilis (strain 168) GN=yvcK PE=3 SV=1 Back     alignment and function description
>sp|Q97LP2|Y512_CLOAB UPF0052 protein CA_C0512 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0512 PE=3 SV=1 Back     alignment and function description
>sp|P38541|YAMB_THETU UPF0052 protein in amyB 5'region OS=Thermoanaerobacter thermosulfurogenes PE=3 SV=1 Back     alignment and function description
>sp|Q55575|Y154_SYNY3 UPF0052 protein sll0154 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0154 PE=3 SV=1 Back     alignment and function description
>sp|P58588|Y2473_LISMO UPF0052 protein lmo2473 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo2473 PE=3 SV=1 Back     alignment and function description
>sp|Q9RUF1|Y1435_DEIRA UPF0052 protein DR_1435 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1435 PE=3 SV=1 Back     alignment and function description
>sp|Q97PN8|Y1565_STRPN UPF0052 protein SP_1565 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=SP_1565 PE=1 SV=1 Back     alignment and function description
>sp|O66974|Y778_AQUAE UPF0052 protein aq_778 OS=Aquifex aeolicus (strain VF5) GN=aq_778 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
225443825462 PREDICTED: uncharacterized protein YNL01 0.970 0.982 0.762 0.0
224114696417 predicted protein [Populus trichocarpa] 0.846 0.949 0.823 0.0
255563114471 conserved hypothetical protein [Ricinus 0.867 0.861 0.817 0.0
356546589472 PREDICTED: uncharacterized protein YNL01 0.982 0.974 0.741 0.0
357446981460 hypothetical protein MTR_2g015860 [Medic 0.884 0.9 0.759 0.0
449509031477 PREDICTED: uncharacterized protein YNL01 0.950 0.932 0.724 0.0
449462647454 PREDICTED: uncharacterized protein YNL01 0.950 0.980 0.726 0.0
194706266435 unknown [Zea mays] 0.863 0.928 0.772 0.0
414881833480 TPA: hypothetical protein ZEAMMB73_58781 0.863 0.841 0.772 0.0
326520734496 predicted protein [Hordeum vulgare subsp 0.923 0.870 0.732 0.0
>gi|225443825|ref|XP_002274261.1| PREDICTED: uncharacterized protein YNL011C [Vitis vinifera] gi|297740490|emb|CBI30672.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/468 (76%), Positives = 394/468 (84%), Gaps = 14/468 (2%)

Query: 1   MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRCSSRKSLTKSMSAATHCRCFSNP----- 55
           MAD  LGP   F+  L F  H      +     S+ +SLT + +   H   FSNP     
Sbjct: 1   MADLGLGPP--FSKALPF--HFPISPSRFH---SAPRSLTMA-ADHPHSYSFSNPNPIPD 52

Query: 56  -THTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIR 114
            + +QPSLLVFSGGTAFNGVVEELK +TT VAHVLPVSDDGGSTAEIVRVLGGPAVGDIR
Sbjct: 53  PSTSQPSLLVFSGGTAFNGVVEELKKLTTCVAHVLPVSDDGGSTAEIVRVLGGPAVGDIR 112

Query: 115 SRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRA 174
           SRCLRLSD+ST EALAVR+LLGHRLPL  Q AK EWY IVEGEH+LW+GVSKPYRETIR+
Sbjct: 113 SRCLRLSDQSTSEALAVRKLLGHRLPLDAQAAKLEWYQIVEGEHALWEGVSKPYRETIRS 172

Query: 175 FLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLP 234
           FL+YFQN+ILRR  ESFCFSNGSIGNFFFAGAR+FF SLDAAIFLFSRVSDIP+ES +LP
Sbjct: 173 FLAYFQNQILRRSKESFCFSNGSIGNFFFAGARIFFDSLDAAIFLFSRVSDIPTESLILP 232

Query: 235 VISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSE 294
           VISTNDRLTLGCEL DG++IRGQNEISHPT+GSM+P+ KE S+VP LPS IKRVFYMSSE
Sbjct: 233 VISTNDRLTLGCELWDGSIIRGQNEISHPTSGSMQPINKEISSVPPLPSAIKRVFYMSSE 292

Query: 295 GSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLL 354
           G NLLHEVFPTAN AVLDQL+ VDCI+YAMGSLFTSICPSLVLLGIGEIISS SC KVLL
Sbjct: 293 GRNLLHEVFPTANPAVLDQLSNVDCIVYAMGSLFTSICPSLVLLGIGEIISSSSCLKVLL 352

Query: 355 LNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQ 414
           LNG  DRETSGFSAS FV+AITDALNR YGDPQ  LKN PSQYINT+LVP+DG+IP+D+Q
Sbjct: 353 LNGTHDRETSGFSASRFVSAITDALNRTYGDPQNRLKNPPSQYINTLLVPKDGQIPVDVQ 412

Query: 415 CLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVRE 462
           CLASQGIF VITV SICDP +GIIFDPKSLI+A+ADL+GR   T V E
Sbjct: 413 CLASQGIFHVITVDSICDPDMGIIFDPKSLIRALADLIGRQTTTNVIE 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114696|ref|XP_002316832.1| predicted protein [Populus trichocarpa] gi|222859897|gb|EEE97444.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563114|ref|XP_002522561.1| conserved hypothetical protein [Ricinus communis] gi|223538252|gb|EEF39861.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356546589|ref|XP_003541707.1| PREDICTED: uncharacterized protein YNL011C-like [Glycine max] Back     alignment and taxonomy information
>gi|357446981|ref|XP_003593766.1| hypothetical protein MTR_2g015860 [Medicago truncatula] gi|355482814|gb|AES64017.1| hypothetical protein MTR_2g015860 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449509031|ref|XP_004163474.1| PREDICTED: uncharacterized protein YNL011C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462647|ref|XP_004149052.1| PREDICTED: uncharacterized protein YNL011C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|194706266|gb|ACF87217.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|414881833|tpg|DAA58964.1| TPA: hypothetical protein ZEAMMB73_587810 [Zea mays] Back     alignment and taxonomy information
>gi|326520734|dbj|BAJ92730.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
TAIR|locus:2055455471 MEE18 "AT2G34090" [Arabidopsis 0.871 0.866 0.704 1.3e-156
CGD|CAL0000122477 orf19.6905 [Candida albicans ( 0.465 0.457 0.393 2.6e-61
UNIPROTKB|Q59S47477 CaO19.6905 "Putative uncharact 0.465 0.457 0.393 2.6e-61
SGD|S000004956444 YNL011C "Putative protein of u 0.423 0.445 0.417 9.9e-52
UNIPROTKB|Q81X60317 BAS5003 "Uncharacterized prote 0.254 0.375 0.307 3.4e-12
TIGR_CMR|BA_5383317 BA_5383 "conserved hypothetica 0.254 0.375 0.307 3.4e-12
UNIPROTKB|Q3AFD9408 CHY_0273 "Putative uncharacter 0.356 0.409 0.306 1.2e-11
TIGR_CMR|CHY_0273408 CHY_0273 "conserved hypothetic 0.356 0.409 0.306 1.2e-11
UNIPROTKB|Q71WV4322 LMOf2365_2446 "Putative unchar 0.275 0.400 0.328 4.9e-10
TAIR|locus:2055455 MEE18 "AT2G34090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1477 (525.0 bits), Expect = 1.3e-156, Sum P(2) = 1.3e-156
 Identities = 293/416 (70%), Positives = 333/416 (80%)

Query:    44 SAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVR 103
             S +    C S+ T   PSLLVFSGGT FNGVVEELK +TTRVAHVLPVSDDGGSTAEIVR
Sbjct:    36 STSLMAECLSSSTVEPPSLLVFSGGTGFNGVVEELKKLTTRVAHVLPVSDDGGSTAEIVR 95

Query:   104 VLGGPAVGDIRSRCLRLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKG 163
             VLGGPAVGDIRSRCLRLSDEST EALAV             QAK +WY+IVEG HSLW G
Sbjct:    96 VLGGPAVGDIRSRCLRLSDESTSEALAVRRLLGHRLPIDAHQAKKDWYDIVEGNHSLWDG 155

Query:   164 VSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRV 223
             VS+PY ETIRAFL YFQNEI RRPNE FCFSNGSIGNFFFAGAR+FFQSLDAAIFLFSRV
Sbjct:   156 VSRPYSETIRAFLIYFQNEIHRRPNERFCFSNGSIGNFFFAGARIFFQSLDAAIFLFSRV 215

Query:   224 SDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPS 283
             S+IP +S VLPVISTNDRLTLGCEL DGT+IRGQNEISHPT G+ + V K   +  ALPS
Sbjct:   216 SEIPCDSLVLPVISTNDRLTLGCELQDGTIIRGQNEISHPTTGTTQTVDKRHCSTSALPS 275

Query:   284 RIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEI 343
             +IKRVFYMSSEG+NLLHEVFP  N  VL+QL +VDCI+YAMGSLFTSICPSLVLLG+GEI
Sbjct:   276 KIKRVFYMSSEGNNLLHEVFPPVNPTVLEQLRSVDCIVYAMGSLFTSICPSLVLLGVGEI 335

Query:   344 ISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILV 403
             ISSRSC KVLLLNG +DRETS F+ASCFVTAI DALNR +GD    LKN P  YINT+LV
Sbjct:   336 ISSRSCRKVLLLNGSQDRETSRFTASCFVTAIADALNRTHGDTNIRLKNPPGYYINTLLV 395

Query:   404 PEDGEIPLDIQCLASQGIFDVITV---H---SICDPKVGIIFDPKSLIQAIADLLG 453
             P+DGEI +D++ L+ QGI+DV+++   H   S+C  +   +    +L+Q + + +G
Sbjct:   396 PKDGEIAVDLKQLSEQGIYDVVSISFLHLFPSLCAQQTLTV--TSTLLQRVVESVG 449
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0048868 "pollen tube development" evidence=IMP
CGD|CAL0000122 orf19.6905 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59S47 CaO19.6905 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000004956 YNL011C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q81X60 BAS5003 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5383 BA_5383 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AFD9 CHY_0273 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0273 CHY_0273 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q71WV4 LMOf2365_2446 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110745
hypothetical protein (417 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
cd07187308 cd07187, YvcK_like, family of mostly uncharacteriz 6e-90
pfam01933291 pfam01933, UPF0052, Uncharacterized protein family 2e-62
TIGR04357368 TIGR04357, CofD_rel_GAK, CofD-related protein, GAK 4e-58
TIGR01826310 TIGR01826, CofD_related, conserved hypothetical pr 2e-23
cd07044309 cd07044, CofD_YvcK, Family of CofD-like proteins a 5e-16
COG0391323 COG0391, COG0391, Uncharacterized conserved protei 6e-15
>gnl|CDD|132873 cd07187, YvcK_like, family of mostly uncharacterized proteins similar to B Back     alignment and domain information 
 Score =  275 bits (707), Expect = 6e-90
 Identities = 103/402 (25%), Positives = 154/402 (38%), Gaps = 107/402 (26%)

Query: 62  LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLS 121
           ++ F GGT  + ++  LK  T  +  ++ V+DDGGS+  + R LG PA GDIR+R + L+
Sbjct: 1   IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTDDGGSSGRLRRELGIPAPGDIRNRLVALA 60

Query: 122 DESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQN 181
           D+ +                                                        
Sbjct: 61  DDESLAQKLF-------------------------------------------------- 70

Query: 182 EILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDR 241
             L R    F     S+GN   A   +   S   AI L SR+  +    +VLPV  TND 
Sbjct: 71  -FLYRRFGDFDLRGHSLGNLILAALTLITGSFAEAILLLSRLLGVRG--RVLPV--TNDP 125

Query: 242 LTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301
           L L  EL DGT++RG++ ISH                  L S IKRVF    +       
Sbjct: 126 LHLVAELEDGTIVRGESRISHLE----------------LGSPIKRVFLEPPD------- 162

Query: 302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDR 361
             P AN   L+ +   D I+Y  GSL+TSI P+L++ GI E I +   PKV + N +   
Sbjct: 163 --PKANPEALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMTQP 220

Query: 362 -ETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQG 420
            ET GF+ S  V A+   L                  ++ +LV  +      ++      
Sbjct: 221 GETDGFTLSDHVRALLRHLG--------------EGLLDVVLVNSERPPEEVLRRYEEGS 266

Query: 421 IFDVITVHSICDPKV------------GIIFDPKSLIQAIAD 450
           +   +    +    +            GI  DP+ L  A+ +
Sbjct: 267 LPVELDEELLEKLGIRVIEADLLSEESGIRHDPEKLAAALLE 308

subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site. Length = 308
>gnl|CDD|216795 pfam01933, UPF0052, Uncharacterized protein family UPF0052 Back     alignment and domain information
>gnl|CDD|213970 TIGR04357, CofD_rel_GAK, CofD-related protein, GAK system Back     alignment and domain information
>gnl|CDD|211689 TIGR01826, CofD_related, conserved hypothetical protein, cofD-related Back     alignment and domain information
>gnl|CDD|132871 cd07044, CofD_YvcK, Family of CofD-like proteins and proteins related to YvcK Back     alignment and domain information
>gnl|CDD|223468 COG0391, COG0391, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 468
TIGR01826310 CofD_related conserved hypothetical protein, cofD- 100.0
cd07044309 CofD_YvcK Family of CofD-like proteins and protein 100.0
cd07187308 YvcK_like family of mostly uncharacterized protein 100.0
PF01933300 UPF0052: Uncharacterised protein family UPF0052; I 100.0
COG0391323 Uncharacterized conserved protein [Function unknow 100.0
cd07186303 CofD_like LPPG:FO 2-phospho-L-lactate transferase; 100.0
TIGR01819297 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. 100.0
PRK13606303 LPPG:FO 2-phospho-L-lactate transferase; Provision 100.0
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related Back     alignment and domain information 
Probab=100.00  E-value=5.5e-85  Score=656.39  Aligned_cols=307  Identities=28%  Similarity=0.417  Sum_probs=280.9

Q ss_pred             EEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 012211           62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL  141 (468)
Q Consensus        62 IVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~~Rf~~  141 (468)
                      ||+||||||++++++|||+++.++||||||+|||||||+||+++|++||||+||||.|||+.+.    .|.+||+|||+.
T Consensus         1 vV~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGGSSg~lr~~~g~~~~GDiRn~L~aLa~~~~----~~~~lf~yRf~~   76 (310)
T TIGR01826         1 VVAIGGGTGLSVLLRGLKELDSRITAIVTVADDGGSSGRLREELDVPPPGDLRNCLAALSDDPS----LLSKLFQYRFGG   76 (310)
T ss_pred             CEEEeCcchHHHHHHHHHhcCCCcEEEEECCcCCcchHHHHHhcCCCCCcHHHHHHHHhCcCCh----HHHHHHhccCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999874    699999999963


Q ss_pred             CchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHHHHHHH
Q 012211          142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS  221 (468)
Q Consensus       142 ~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~AI~~~s  221 (468)
                                                                      ++||+|||+|||||+|++.++|+|.+||+.++
T Consensus        77 ------------------------------------------------~~dl~gh~~GNl~Laal~~~~g~~~~Ai~~~~  108 (310)
T TIGR01826        77 ------------------------------------------------GGELSGHSLGNLMLAALSEISGSFLEAINLLS  108 (310)
T ss_pred             ------------------------------------------------CCcccCCcHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                                                            35799999999999999999999999999999


Q ss_pred             hhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCCCCccc
Q 012211          222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE  301 (468)
Q Consensus       222 ~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~~  301 (468)
                      ++++|+  |+|+||  |+++++|+|+++||++++||++|+..                  ..+|++|||.+.        
T Consensus       109 ~~l~v~--g~VlP~--t~~~v~L~a~~~dG~~v~Ge~~i~~~------------------~~~I~~v~l~~~--------  158 (310)
T TIGR01826       109 KILKVK--GRVLPM--SEHPVTLVAEFEDGREVRGESNIPKM------------------GGKIDRVRLEPE--------  158 (310)
T ss_pred             HHhCCC--CEEECC--CCCceEEEEEECCCCEEEEEEhhhcC------------------CCCceEEEEeCC--------
Confidence            999998  899999  89999999999999999999999752                  567999999874        


Q ss_pred             cCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHHHHHhc
Q 012211          302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAITDALN  380 (468)
Q Consensus       302 ~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al~~~lg  380 (468)
                       .|+++|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||+||+++|||++|.+|+|
T Consensus       159 -~~~a~~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~tq~gEt~g~~~~dhv~~i~~~~g  237 (310)
T TIGR01826       159 -DVPALREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDGFSLEDHVDALHRHLG  237 (310)
T ss_pred             -CCCCCHHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCCCCCCCCCCCCHHHHHHHHHHHcC
Confidence             4899999999999999999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             ccCCCCCC-CCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHHHH
Q 012211          381 RAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLL  452 (468)
Q Consensus       381 ~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~l~  452 (468)
                      ....|.++ +....+.+++++|......++..|.+.++++|++ |+..+.+...+...||||++||++|++++
T Consensus       238 ~~~~D~vlvn~~~~~~~~~~~y~~~~~~pv~~d~~~~~~~g~~-vi~~~l~~~~~~~~rHD~~~La~~l~~l~  309 (310)
T TIGR01826       238 KPFIDTVLVNTEKVPLEVLRNYFEEGSEQVEHDAEGLQKLGIE-VIFEDLLRAENGTIRHDPQKLADALERIL  309 (310)
T ss_pred             CCCCCEEEECCCCCChHHHHHHHhccCCcccccHHHHHhCCCE-EEeccccccCCCCcccCHHHHHHHHHHHh
Confidence            87667665 4456788888887666666788899999999999 55676554444468999999999999876

This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK Back     alignment and domain information
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B Back     alignment and domain information
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052 Back     alignment and domain information
>COG0391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis Back     alignment and domain information
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase Back     alignment and domain information
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
2o2z_A323 Crystal Structure Of A Protein Member Of The Upf005 5e-14
2hzb_A333 X-Ray Crystal Structure Of Protein Bh3568 From Baci 6e-14
2p0y_A341 Crystal Structure Of Q88yi3_lacpl From Lactobacillu 5e-10
2ppv_A332 Crystal Structure Of A Protein Belonging To The Upf 6e-08
2q7x_A326 Crystal Structure Of A Putative Phospho Transferase 4e-04
>pdb|2O2Z|A Chain A, Crystal Structure Of A Protein Member Of The Upf0052 Family (Bh3568) From Bacillus Halodurans At 2.60 A Resolution Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 84/320 (26%)
Query: 59  QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
           + +++VF GGT  + ++  LK     +  ++ V+DDGGS+  + + L  P  GD+R+  +
Sbjct: 4   KKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 63
Query: 119 RLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
            LS+                                           +P  E +  F   
Sbjct: 64  ALSE------------------------------------------VEPLLEQL--FQHR 79
Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
           F+N            S  S+GN   AG           I   S+V ++    +VLP  ++
Sbjct: 80  FEN--------GNGLSGHSLGNLLLAGXTSITGDFARGISEXSKVLNV--RGKVLP--AS 127
Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
           N  + L  E  DGT++ G+                  S++P    +IKRVF ++ + +  
Sbjct: 128 NRSIILHGEXEDGTIVTGE------------------SSIPKAGKKIKRVF-LTPKDTKP 168
Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLN-G 357
           L E         L+ +   D I+   GSL+TS+ P+L++ GI E I   +  KV + N  
Sbjct: 169 LREG--------LEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVX 220
Query: 358 LEDRETSGFSASCFVTAITD 377
            ++ ET G++AS  + AI D
Sbjct: 221 TQNGETDGYTASDHLQAIXD 240
>pdb|2HZB|A Chain A, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus Halodurans. Northeast Structural Genomics Consortium Bhr60. Length = 333 Back     alignment and structure
>pdb|2P0Y|A Chain A, Crystal Structure Of Q88yi3_lacpl From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target Lpr6 Length = 341 Back     alignment and structure
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052 (Se_0549) From Staphylococcus Epidermidis Atcc 12228 At 2.00 A Resolution Length = 332 Back     alignment and structure
>pdb|2Q7X|A Chain A, Crystal Structure Of A Putative Phospho Transferase (Sp_1565) From Streptococcus Pneumoniae Tigr4 At 2.00 A Resolution Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
2o2z_A323 Hypothetical protein; structural genomics, joint c 8e-54
2q7x_A326 UPF0052 protein SP_1565; structural genomics, join 4e-53
2p0y_A341 Hypothetical protein LP_0780; structural genomics, 3e-50
2ppv_A332 Uncharacterized protein; putative phosphotransfera 1e-48
3c3d_A311 2-phospho-L-lactate transferase; alpha-beta protei 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A Length = 323 Back     alignment and structure
 Score =  182 bits (463), Expect = 8e-54
 Identities = 86/402 (21%), Positives = 150/402 (37%), Gaps = 86/402 (21%)

Query: 59  QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
           + +++VF GGT  + ++  LK     +  ++ V+DDGGS+  + + L  P  GD+R+  +
Sbjct: 4   KKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 63

Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
            LS+        + +L  HR                                        
Sbjct: 64  ALSEVEP----LLEQLFQHRF--------------------------------------- 80

Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
                          S  S+GN   AG           I   S+V ++    +VLP   +
Sbjct: 81  ---------ENGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRG--KVLPA--S 127

Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
           N  + L  E+ DGT++ G+                  S++P    +IKRVF         
Sbjct: 128 NRSIILHGEMEDGTIVTGE------------------SSIPKAGKKIKRVF--------- 160

Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLN-G 357
           L           L+ +   D I+   GSL+TS+ P+L++ GI E I   +  KV + N  
Sbjct: 161 LTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVM 220

Query: 358 LEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGE-IPLDIQCL 416
            ++ ET G++AS  + AI D       D         S  +      E  E + +D   L
Sbjct: 221 TQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKL 280

Query: 417 ASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKT 458
            + G+   I+ + + +    +  +   + +AI +   R   +
Sbjct: 281 KALGV-GTISDYFVLEQDDVLRHNASKVSEAILEGKPRTSSS 321
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae} Length = 326 Back     alignment and structure
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} Length = 341 Back     alignment and structure
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis} Length = 332 Back     alignment and structure
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A Length = 311 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
2o2z_A323 Hypothetical protein; structural genomics, joint c 100.0
2ppv_A332 Uncharacterized protein; putative phosphotransfera 100.0
2q7x_A326 UPF0052 protein SP_1565; structural genomics, join 100.0
2p0y_A341 Hypothetical protein LP_0780; structural genomics, 100.0
3c3d_A311 2-phospho-L-lactate transferase; alpha-beta protei 100.0
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A Back     alignment and structure
Probab=100.00  E-value=2.4e-85  Score=661.85  Aligned_cols=316  Identities=26%  Similarity=0.380  Sum_probs=281.6

Q ss_pred             CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhc
Q 012211           57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLG  136 (468)
Q Consensus        57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~  136 (468)
                      .++||||+||||||++++++|||+++.++|+||||+|||||||+||++||++|||||||||+|||+.++    .+.+||+
T Consensus         2 ~~~~kiv~lgGGtGl~~ll~gL~~~~~~iT~IVtv~DdGgssG~LR~~~~~~~pGDir~~l~aLa~~~~----~~~~L~~   77 (323)
T 2o2z_A            2 MKKKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEP----LLEQLFQ   77 (323)
T ss_dssp             CCCEEEEEEECSHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHHTSCCCHHHHHHHHHHCCCCH----HHHHHHH
T ss_pred             CCCCeEEEECCcccHHHHHHHHHhcCCCeEEEEECCcCCccchhhHhhcCCCCCchHHHHHHHhCCCcH----HHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999999864    6899999


Q ss_pred             CcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHH
Q 012211          137 HRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAA  216 (468)
Q Consensus       137 ~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~A  216 (468)
                      |||+.                                                ++||+|||+|||||+|+++++|+|.+|
T Consensus        78 ~Rf~~------------------------------------------------~~dlagh~~GNl~L~al~~~~g~~~~a  109 (323)
T 2o2z_A           78 HRFEN------------------------------------------------GNGLSGHSLGNLLLAGMTSITGDFARG  109 (323)
T ss_dssp             CBCCC------------------------------------------------C-CCTTCBHHHHHHHHHHHHHTCHHHH
T ss_pred             hCCCC------------------------------------------------CCccccCcHHHHHHHHHHHccCCHHHH
Confidence            99974                                                468999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCC
Q 012211          217 IFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGS  296 (468)
Q Consensus       217 I~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~  296 (468)
                      |+.+|++|+|+  ++|+||  |+++++|+|+++||++++||++|+++                  ..+|++|||.+.   
T Consensus       110 i~~~~~~l~v~--g~VlP~--s~~~v~l~a~~~dG~~v~ge~~I~~~------------------~~~i~~v~~~p~---  164 (323)
T 2o2z_A          110 ISEMSKVLNVR--GKVLPA--SNRSIILHGEMEDGTIVTGESSIPKA------------------GKKIKRVFLTPK---  164 (323)
T ss_dssp             HHHHHHHTTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTGGGG------------------CSCEEEEEEEST---
T ss_pred             HHHHHHHhCCC--CEEEcC--CCCceEEEEEECCCCEEEEeEcccCC------------------CCCceEEEEeCC---
Confidence            99999999998  899999  89999999999999999999999874                  479999999864   


Q ss_pred             CCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHH
Q 012211          297 NLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAI  375 (468)
Q Consensus       297 ~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al  375 (468)
                            .|+++|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||+||+++||++++
T Consensus       165 ------~~~~~p~~l~AI~~AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~Nl~tq~GET~g~s~~dhv~ai  238 (323)
T 2o2z_A          165 ------DTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAI  238 (323)
T ss_dssp             ------TCCCCHHHHHHHHHCSEEEECSSCTTTTHHHHHTSTTHHHHHHHCCSEEEEECCSBCCTTTSTTCCHHHHHHHH
T ss_pred             ------CCCCCHHHHHHHHhCCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence                  5899999999999999999999999999999999999999999999999999999 899999999999999999


Q ss_pred             HHHhcccCCCCCCCC-CCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHHHHhh
Q 012211          376 TDALNRAYGDPQKSL-KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGR  454 (468)
Q Consensus       376 ~~~lg~~~~~~~~~~-~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~l~~~  454 (468)
                      .+|++....|.++.+ ...+++++++|..+...++.+|.+.++++|+++ +..+.++.++...+||+++||++|++++.+
T Consensus       239 ~~~~~~~~iD~vlv~~~~~~~~~~~~Y~~~~~~pv~~d~~~l~~~G~~v-i~~~l~~~~~~~~rhD~~~La~al~~l~~~  317 (323)
T 2o2z_A          239 MDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGT-ISDYFVLEQDDVLRHNASKVSEAILEGKPR  317 (323)
T ss_dssp             HHHHCSSSCSEEEEECSCCCHHHHHHHHTTTCCBCCCCHHHHHHTTCEE-EEECCEEEC--CEEECHHHHHHHHHC----
T ss_pred             HHhcCCCCCcEEEECCCcCCHHHHHHHHhcCCCccccCHHHHHhCCCEE-EEecccccCCCCCccCHHHHHHHHHHHHhh
Confidence            999998777766543 456777788764334446788999999999994 578877665467899999999999999876


Q ss_pred             hc
Q 012211          455 HM  456 (468)
Q Consensus       455 ~~  456 (468)
                      ..
T Consensus       318 ~~  319 (323)
T 2o2z_A          318 TS  319 (323)
T ss_dssp             --
T ss_pred             cc
Confidence            54
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis} Back     alignment and structure
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} Back     alignment and structure
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 468
d2hzba1311 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {B 2e-51
d2ffea1309 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate tr 9e-30
>d2hzba1 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {Bacillus halodurans [TaxId: 86665]} Length = 311 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CofD-like
superfamily: CofD-like
family: CofD-like
domain: Hypothetical protein BH3568
species: Bacillus halodurans [TaxId: 86665]

 Score =  174 bits (442), Expect = 2e-51
 Identities = 83/394 (21%), Positives = 146/394 (37%), Gaps = 86/394 (21%)

Query: 59  QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
           + +++VF GGT  + ++  LK     +  ++ V+DDGGS+  + + L  P  GD+R+  +
Sbjct: 2   KKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 61

Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
            LS+        + +L  HR                                        
Sbjct: 62  ALSEVEP----LLEQLFQHRFE-------------------------------------- 79

Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
                          S  S+GN   AG           I   S+V ++    +VLP   +
Sbjct: 80  ----------NGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRG--KVLPA--S 125

Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
           N  + L  E+ DGT++ G++ I                       +IKRVF    +    
Sbjct: 126 NRSIILHGEMEDGTIVTGESSIPK------------------AGKKIKRVFLTPKD---- 163

Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLN-G 357
                       L+ +   D I+   GSL+TS+ P+L++ GI E I   +  KV + N  
Sbjct: 164 -----TKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVM 218

Query: 358 LEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGE-IPLDIQCL 416
            ++ ET G++AS  + AI D       D         S  +      E  E + +D   L
Sbjct: 219 TQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKL 278

Query: 417 ASQGIFDVITVHSICDPKVGIIFDPKSLIQAIAD 450
            + G+   I+ + + +    +  +   + +AI +
Sbjct: 279 KALGV-GTISDYFVLEQDDVLRHNASKVSEAILE 311
>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]} Length = 309 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
d2hzba1311 Hypothetical protein BH3568 {Bacillus halodurans [ 100.0
d2ffea1309 LPPG:FO 2-phospho-L-lactate transferase CofD {Meth 100.0
d1fcda1186 Flavocytochrome c sulfide dehydrogenase, FCSD, fla 80.41
>d2hzba1 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CofD-like
superfamily: CofD-like
family: CofD-like
domain: Hypothetical protein BH3568
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=7e-77  Score=598.16  Aligned_cols=309  Identities=26%  Similarity=0.391  Sum_probs=280.5

Q ss_pred             CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcC
Q 012211           58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGH  137 (468)
Q Consensus        58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~~  137 (468)
                      +.++||+||||||++++++||++++.++|+||||+|||||||+||++|+++|+||+|+||+||++.++    .|..+|+|
T Consensus         1 ~~~~Iv~l~GGtG~~~ll~gl~~~~~~lt~IVn~~DDggssG~Lr~~~~i~p~gD~r~~l~al~~~~~----~~~~l~~~   76 (311)
T d2hzba1           1 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEP----LLEQLFQH   76 (311)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHTCSCCCHHHHHHHHHHCCSCH----HHHHHHHC
T ss_pred             CCCcEEEECCcccHHHHHHHHHhCCCCeEEEEECccCCccchhhhhhcCCCCchHHHHHHHhcCCCcH----HHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999998764    47889999


Q ss_pred             cCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHHH
Q 012211          138 RLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAI  217 (468)
Q Consensus       138 Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~AI  217 (468)
                      ||+.                                                .|++.+|++||++|++++..+++|.+||
T Consensus        77 rf~~------------------------------------------------~~~~~~~~lGn~~la~~~~~~~~l~~ai  108 (311)
T d2hzba1          77 RFEN------------------------------------------------GNGLSGHSLGNLLLAGMTSITGDFARGI  108 (311)
T ss_dssp             BCCC------------------------------------------------CSSSTTCBHHHHHHHHHHHHHSCHHHHH
T ss_pred             hccc------------------------------------------------cCCcccchHHHHHHHHHHHhcCCHHHHH
Confidence            9974                                                3678999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCCC
Q 012211          218 FLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSN  297 (468)
Q Consensus       218 ~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~  297 (468)
                      +.++++++|+  ++|+||  |+++++|+|+++||++++||++|.+.                  ..+++++|+.+.    
T Consensus       109 ~~~~~~lgi~--~~VlP~--t~~~v~l~~~~~dG~~~~ge~~i~~~------------------~~~~~~~~~~~~----  162 (311)
T d2hzba1         109 SEMSKVLNVR--GKVLPA--SNRSIILHGEMEDGTIVTGESSIPKA------------------GKKIKRVFLTPK----  162 (311)
T ss_dssp             HHHHHHHTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTSGGG------------------CSCEEEEEEEST----
T ss_pred             HHHHHHhCCC--CEEEec--CCCceEEEEEECCCCcccCcchhhhc------------------CCcceEeecccC----
Confidence            9999999998  899999  89999999999999999999999863                  457888888765    


Q ss_pred             CccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHHH
Q 012211          298 LLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAIT  376 (468)
Q Consensus       298 ~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al~  376 (468)
                           .|+++|++++||++||+||||||||||||+|||+++||++||++++|+||||+|+ +|+|||.||+++||++++.
T Consensus       163 -----~~~~~~~~~~aI~~AD~IiigPgs~~tSI~P~L~v~gi~~AI~~s~a~~v~V~ni~~~~gET~g~~~~d~v~~i~  237 (311)
T d2hzba1         163 -----DTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIM  237 (311)
T ss_dssp             -----TCCCCHHHHHHHHHCSEEEECSSCCCCCCHHHHTSTTHHHHHHHCCSEEEEECCSBCCTTTSTTCCHHHHHHHHH
T ss_pred             -----CCcCChhHHHHHHhCCcEEEcCCcHHHHhhhheecHHHHHHHhcCCCCEEEEecCCCCcccccCcCHHHHHHHHH
Confidence                 4899999999999999999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             HHhcccCCCCCCC-CCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHH
Q 012211          377 DALNRAYGDPQKS-LKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIAD  450 (468)
Q Consensus       377 ~~lg~~~~~~~~~-~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~  450 (468)
                      +|++....|.++. ....++..+..|......++.+|.+.++++|+++ +..+.++......|||+++||++|++
T Consensus       238 ~~l~~~~~D~vlvn~~~~~~~~~~~y~~~~~~~V~~d~~~~~~~g~~v-i~~~~~~~~~~~~rHD~~kLa~~lle  311 (311)
T d2hzba1         238 DHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGT-ISDYFVLEQDDVLRHNASKVSEAILE  311 (311)
T ss_dssp             HHHCSSSCSEEEEECSCCCHHHHHHHHTTTCCBCCCCHHHHHHTTCEE-EEECCCEESSSSEECCHHHHHHHHTC
T ss_pred             HHhCcCCCCEEEECCCCCCHHHHHHHHHccCCcccCCHHHHHhCCCEE-EeeceEecCCCCcccCHHHHHHHHhC
Confidence            9999876666553 3456667777775555567889999999999995 57888888777789999999999864
>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Back     information, alignment and structure